AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0549780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549780 MtrunA17_Chr4g0034371 100.000 191 0 0 1 191 354 544 3.55e-137 396
Msa0549780 MtrunA17_Chr4g0034361 98.148 54 1 0 193 246 1 54 5.70e-32 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0549780 AT2G16090.2 55.556 252 94 4 1 245 292 532 4.35e-90 276
Msa0549780 AT4G34370.2 56.154 260 85 7 2 246 185 430 5.88e-90 272
Msa0549780 AT2G16090.1 55.556 252 94 4 1 245 352 592 1.42e-89 276
Msa0549780 AT4G34370.1 56.154 260 85 7 2 246 352 597 4.78e-88 272
Msa0549780 AT2G16090.4 56.202 258 77 6 1 245 352 586 2.18e-87 270
Msa0549780 AT2G16090.5 66.667 180 54 2 1 180 292 465 1.96e-80 249
Msa0549780 AT2G16090.3 66.667 180 54 2 1 180 352 525 7.60e-80 250
Msa0549780 AT3G27710.1 59.444 180 67 3 2 180 350 524 4.70e-67 216
Msa0549780 AT3G27720.1 56.425 179 74 2 2 180 310 484 1.76e-65 211

Find 38 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTTACTTTCAAGCTTAA+AGG 0.141595 4_1:+44989155 None:intergenic
CATAAGTTTAGCATATTTAA+AGG 0.183354 4_1:+44988837 None:intergenic
GTGCATCGACAATGATTTAT+TGG 0.189539 4_1:-44988667 Msa0549780:CDS
TCTATGCCCTTTGATTTATA+TGG 0.230617 4_1:+44988609 None:intergenic
CTTTAAATATGCTAAACTTA+TGG 0.276659 4_1:-44988836 Msa0549780:CDS
CTTCAGAGCTTCCAGTTTGT+TGG 0.314668 4_1:-44988581 Msa0549780:CDS
GATTATAGCTGGGTAAATAA+TGG 0.340008 4_1:-44989060 Msa0549780:CDS
GCTTTATTGCTCCAACAAAC+TGG 0.371482 4_1:+44988570 None:intergenic
CTGAACTCAATGATTATAGC+TGG 0.414125 4_1:-44989071 Msa0549780:CDS
GGATCAACAGCAGCAGTTAG+AGG 0.425749 4_1:-44988905 Msa0549780:CDS
ATGCTAAACTTATGGAGATA+AGG 0.473847 4_1:-44988828 Msa0549780:CDS
GGTACATGCATTATCATAAC+CGG 0.485862 4_1:-44989197 Msa0549780:exon
ACAAATGTCAGAAGCTGAAA+GGG 0.487072 4_1:-44988950 Msa0549780:CDS
AGAAATGTTACTGAGTGAAA+AGG 0.489380 4_1:-44987900 Msa0549780:CDS
GGGCAAAGAGGGATCTCTAT+AGG 0.491647 4_1:-44989218 Msa0549780:five_prime_UTR
AATGAAACAGAACTTATTTG+AGG 0.494812 4_1:-44988926 Msa0549780:CDS
GAGCAATAAAGCTGACAATA+CGG 0.496778 4_1:-44988559 Msa0549780:CDS
CGTAAGCGTGCCAGAGAAGA+AGG 0.497557 4_1:-44987803 Msa0549780:CDS
TCAAGAGAAATCAGCTGAGC+GGG 0.505415 4_1:-44989238 Msa0549780:five_prime_UTR
ATCAGCTGAGCGGGCAAAGA+GGG 0.511484 4_1:-44989229 Msa0549780:five_prime_UTR
TATAGCACCATATAAATCAA+AGG 0.523492 4_1:-44988616 Msa0549780:CDS
AACAAATGTCAGAAGCTGAA+AGG 0.528651 4_1:-44988951 Msa0549780:CDS
ATAGCACCATATAAATCAAA+GGG 0.529766 4_1:-44988615 Msa0549780:CDS
TTTCTGTCTACAACTTCAGC+TGG 0.532183 4_1:+44987758 None:intergenic
TTATTGGATTCTATTAATCT+CGG 0.532615 4_1:-44988651 Msa0549780:CDS
AGCAATAAAGCTGACAATAC+GGG 0.541090 4_1:-44988558 Msa0549780:intron
AGTCTGTGTGAGCTTTATAC+CGG 0.559653 4_1:+44989178 None:intergenic
TGTATATATGCTGCAAGCGT+AGG 0.573507 4_1:-44987872 Msa0549780:CDS
GCATATTTAAAGGTGTCGAA+AGG 0.577111 4_1:+44988847 None:intergenic
TGAACTCAATGATTATAGCT+GGG 0.579869 4_1:-44989070 Msa0549780:CDS
AAACTGAAAGATATCATACA+AGG 0.580876 4_1:-44989138 Msa0549780:CDS
CTTAATCAGTCAGAAGAGAG+TGG 0.594834 4_1:-44987836 Msa0549780:CDS
CAAACGCATATGAATATGAA+AGG 0.599466 4_1:+44989007 None:intergenic
ATCAAGAGAAATCAGCTGAG+CGG 0.602973 4_1:-44989239 Msa0549780:five_prime_UTR
ATTTATATGGTGCTATACTG+TGG 0.634097 4_1:+44988622 None:intergenic
AATCAGCTGAGCGGGCAAAG+AGG 0.650192 4_1:-44989230 Msa0549780:five_prime_UTR
AACTGAAAGATATCATACAA+GGG 0.667662 4_1:-44989137 Msa0549780:CDS
AAGCGTGCCAGAGAAGAAGG+TGG 0.717667 4_1:-44987800 Msa0549780:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATAAGTTTAGCATATTTAA+AGG + chr4_1:44988169-44988188 None:intergenic 20.0%
!! CTTTAAATATGCTAAACTTA+TGG - chr4_1:44988167-44988186 Msa0549780:intron 20.0%
!! TTATTGGATTCTATTAATCT+CGG - chr4_1:44988352-44988371 Msa0549780:intron 20.0%
!!! AAGTAATGGAAAATTAATCA+TGG + chr4_1:44988731-44988750 None:intergenic 20.0%
!! TTAATAAAACCACTGTTAAT+TGG - chr4_1:44988831-44988850 Msa0549780:CDS 20.0%
!! TAATAAAACCACTGTTAATT+GGG - chr4_1:44988832-44988851 Msa0549780:CDS 20.0%
!! GCTCAAGATATAAATTAATT+TGG + chr4_1:44989013-44989032 None:intergenic 20.0%
!! CATAAGTTTAGCATATTTAA+AGG + chr4_1:44988169-44988188 None:intergenic 20.0%
!! CTTTAAATATGCTAAACTTA+TGG - chr4_1:44988167-44988186 Msa0549780:intron 20.0%
!! TTATTGGATTCTATTAATCT+CGG - chr4_1:44988352-44988371 Msa0549780:intron 20.0%
!!! AAGTAATGGAAAATTAATCA+TGG + chr4_1:44988731-44988750 None:intergenic 20.0%
!! TTAATAAAACCACTGTTAAT+TGG - chr4_1:44988831-44988850 Msa0549780:CDS 20.0%
!! TAATAAAACCACTGTTAATT+GGG - chr4_1:44988832-44988851 Msa0549780:CDS 20.0%
!! GCTCAAGATATAAATTAATT+TGG + chr4_1:44989013-44989032 None:intergenic 20.0%
! AAACTGAAAGATATCATACA+AGG - chr4_1:44987865-44987884 Msa0549780:CDS 25.0%
! AACTGAAAGATATCATACAA+GGG - chr4_1:44987866-44987885 Msa0549780:CDS 25.0%
! ATTACAGAAGAAAAACATTC+TGG - chr4_1:44987898-44987917 Msa0549780:CDS 25.0%
! AATGAAACAGAACTTATTTG+AGG - chr4_1:44988077-44988096 Msa0549780:intron 25.0%
!!! TGAAAAACTCTCTAAGATTT+TGG - chr4_1:44988128-44988147 Msa0549780:intron 25.0%
! TGAATTCTTATATTGAATGC+AGG - chr4_1:44988308-44988327 Msa0549780:intron 25.0%
! TATAGCACCATATAAATCAA+AGG - chr4_1:44988387-44988406 Msa0549780:intron 25.0%
! ATAGCACCATATAAATCAAA+GGG - chr4_1:44988388-44988407 Msa0549780:intron 25.0%
! TAAATGTCTATTGTTGGATT+TGG - chr4_1:44988468-44988487 Msa0549780:intron 25.0%
! TATATGCACAATACAAGTAA+TGG + chr4_1:44988745-44988764 None:intergenic 25.0%
!!! CAGTGGTTTTATTAAAATCA+GGG + chr4_1:44988826-44988845 None:intergenic 25.0%
!!! ACAGTGGTTTTATTAAAATC+AGG + chr4_1:44988827-44988846 None:intergenic 25.0%
! TTTCATGATTGAATTGTGTA+TGG - chr4_1:44988866-44988885 Msa0549780:CDS 25.0%
! AAACTGAAAGATATCATACA+AGG - chr4_1:44987865-44987884 Msa0549780:CDS 25.0%
! AACTGAAAGATATCATACAA+GGG - chr4_1:44987866-44987885 Msa0549780:CDS 25.0%
! ATTACAGAAGAAAAACATTC+TGG - chr4_1:44987898-44987917 Msa0549780:CDS 25.0%
! AATGAAACAGAACTTATTTG+AGG - chr4_1:44988077-44988096 Msa0549780:intron 25.0%
!!! TGAAAAACTCTCTAAGATTT+TGG - chr4_1:44988128-44988147 Msa0549780:intron 25.0%
! TGAATTCTTATATTGAATGC+AGG - chr4_1:44988308-44988327 Msa0549780:intron 25.0%
! TATAGCACCATATAAATCAA+AGG - chr4_1:44988387-44988406 Msa0549780:intron 25.0%
! ATAGCACCATATAAATCAAA+GGG - chr4_1:44988388-44988407 Msa0549780:intron 25.0%
! TAAATGTCTATTGTTGGATT+TGG - chr4_1:44988468-44988487 Msa0549780:intron 25.0%
! TATATGCACAATACAAGTAA+TGG + chr4_1:44988745-44988764 None:intergenic 25.0%
!!! CAGTGGTTTTATTAAAATCA+GGG + chr4_1:44988826-44988845 None:intergenic 25.0%
!!! ACAGTGGTTTTATTAAAATC+AGG + chr4_1:44988827-44988846 None:intergenic 25.0%
! TTTCATGATTGAATTGTGTA+TGG - chr4_1:44988866-44988885 Msa0549780:CDS 25.0%
CAGTTTACTTTCAAGCTTAA+AGG + chr4_1:44987851-44987870 None:intergenic 30.0%
TGAACTCAATGATTATAGCT+GGG - chr4_1:44987933-44987952 Msa0549780:intron 30.0%
GATTATAGCTGGGTAAATAA+TGG - chr4_1:44987943-44987962 Msa0549780:intron 30.0%
CAAACGCATATGAATATGAA+AGG + chr4_1:44987999-44988018 None:intergenic 30.0%
!!! AAAACTCTCTAAGATTTTGG+AGG - chr4_1:44988131-44988150 Msa0549780:intron 30.0%
ATGCTAAACTTATGGAGATA+AGG - chr4_1:44988175-44988194 Msa0549780:intron 30.0%
!! ATTTATATGGTGCTATACTG+TGG + chr4_1:44988384-44988403 None:intergenic 30.0%
! TCTATGCCCTTTGATTTATA+TGG + chr4_1:44988397-44988416 None:intergenic 30.0%
ACCTGTTATCAGTAACTAAT+TGG - chr4_1:44988582-44988601 Msa0549780:CDS 30.0%
CCTGTTATCAGTAACTAATT+GGG - chr4_1:44988583-44988602 Msa0549780:CDS 30.0%
CAGTAACTAATTGGGTTATA+TGG - chr4_1:44988591-44988610 Msa0549780:CDS 30.0%
ACTTGTATTGTGCATATATG+TGG - chr4_1:44988747-44988766 Msa0549780:intron 30.0%
CTTGTATTGTGCATATATGT+GGG - chr4_1:44988748-44988767 Msa0549780:intron 30.0%
TTAAAATCAGGGTGAAATCA+AGG + chr4_1:44988815-44988834 None:intergenic 30.0%
TGAATGAATATATTGCATCG+TGG - chr4_1:44988892-44988911 Msa0549780:CDS 30.0%
!! TTTTCTTCAGTTTGACTTTG+TGG - chr4_1:44989074-44989093 Msa0549780:CDS 30.0%
AGAAATGTTACTGAGTGAAA+AGG - chr4_1:44989103-44989122 Msa0549780:CDS 30.0%
CAGTTTACTTTCAAGCTTAA+AGG + chr4_1:44987851-44987870 None:intergenic 30.0%
TGAACTCAATGATTATAGCT+GGG - chr4_1:44987933-44987952 Msa0549780:intron 30.0%
GATTATAGCTGGGTAAATAA+TGG - chr4_1:44987943-44987962 Msa0549780:intron 30.0%
CAAACGCATATGAATATGAA+AGG + chr4_1:44987999-44988018 None:intergenic 30.0%
!!! AAAACTCTCTAAGATTTTGG+AGG - chr4_1:44988131-44988150 Msa0549780:intron 30.0%
ATGCTAAACTTATGGAGATA+AGG - chr4_1:44988175-44988194 Msa0549780:intron 30.0%
!! ATTTATATGGTGCTATACTG+TGG + chr4_1:44988384-44988403 None:intergenic 30.0%
! TCTATGCCCTTTGATTTATA+TGG + chr4_1:44988397-44988416 None:intergenic 30.0%
ACCTGTTATCAGTAACTAAT+TGG - chr4_1:44988582-44988601 Msa0549780:CDS 30.0%
CCTGTTATCAGTAACTAATT+GGG - chr4_1:44988583-44988602 Msa0549780:CDS 30.0%
CAGTAACTAATTGGGTTATA+TGG - chr4_1:44988591-44988610 Msa0549780:CDS 30.0%
ACTTGTATTGTGCATATATG+TGG - chr4_1:44988747-44988766 Msa0549780:intron 30.0%
CTTGTATTGTGCATATATGT+GGG - chr4_1:44988748-44988767 Msa0549780:intron 30.0%
TTAAAATCAGGGTGAAATCA+AGG + chr4_1:44988815-44988834 None:intergenic 30.0%
TGAATGAATATATTGCATCG+TGG - chr4_1:44988892-44988911 Msa0549780:CDS 30.0%
!! TTTTCTTCAGTTTGACTTTG+TGG - chr4_1:44989074-44989093 Msa0549780:CDS 30.0%
AGAAATGTTACTGAGTGAAA+AGG - chr4_1:44989103-44989122 Msa0549780:CDS 30.0%
GGTACATGCATTATCATAAC+CGG - chr4_1:44987806-44987825 Msa0549780:CDS 35.0%
CTGAACTCAATGATTATAGC+TGG - chr4_1:44987932-44987951 Msa0549780:intron 35.0%
! GCGTTTGCGTTTTATATGTT+TGG - chr4_1:44988012-44988031 Msa0549780:intron 35.0%
AACAAATGTCAGAAGCTGAA+AGG - chr4_1:44988052-44988071 Msa0549780:intron 35.0%
ACAAATGTCAGAAGCTGAAA+GGG - chr4_1:44988053-44988072 Msa0549780:intron 35.0%
!! GCATATTTAAAGGTGTCGAA+AGG + chr4_1:44988159-44988178 None:intergenic 35.0%
! TAAGTGTTGTGCTTTAGATG+AGG - chr4_1:44988249-44988268 Msa0549780:intron 35.0%
! GTGCATCGACAATGATTTAT+TGG - chr4_1:44988336-44988355 Msa0549780:intron 35.0%
GAGCAATAAAGCTGACAATA+CGG - chr4_1:44988444-44988463 Msa0549780:intron 35.0%
AGCAATAAAGCTGACAATAC+GGG - chr4_1:44988445-44988464 Msa0549780:intron 35.0%
TACGGGTAAATGTCTATTGT+TGG - chr4_1:44988462-44988481 Msa0549780:intron 35.0%
CCCAATTAGTTACTGATAAC+AGG + chr4_1:44988586-44988605 None:intergenic 35.0%
AAAACCACTGTTAATTGGGA+TGG - chr4_1:44988836-44988855 Msa0549780:CDS 35.0%
AAATCCATCCCAATTAACAG+TGG + chr4_1:44988843-44988862 None:intergenic 35.0%
GTTGTTGTAACATGAGAAAG+CGG - chr4_1:44988985-44989004 Msa0549780:CDS 35.0%
GGTACATGCATTATCATAAC+CGG - chr4_1:44987806-44987825 Msa0549780:CDS 35.0%
CTGAACTCAATGATTATAGC+TGG - chr4_1:44987932-44987951 Msa0549780:intron 35.0%
! GCGTTTGCGTTTTATATGTT+TGG - chr4_1:44988012-44988031 Msa0549780:intron 35.0%
AACAAATGTCAGAAGCTGAA+AGG - chr4_1:44988052-44988071 Msa0549780:intron 35.0%
ACAAATGTCAGAAGCTGAAA+GGG - chr4_1:44988053-44988072 Msa0549780:intron 35.0%
!! GCATATTTAAAGGTGTCGAA+AGG + chr4_1:44988159-44988178 None:intergenic 35.0%
! TAAGTGTTGTGCTTTAGATG+AGG - chr4_1:44988249-44988268 Msa0549780:intron 35.0%
! GTGCATCGACAATGATTTAT+TGG - chr4_1:44988336-44988355 Msa0549780:intron 35.0%
GAGCAATAAAGCTGACAATA+CGG - chr4_1:44988444-44988463 Msa0549780:intron 35.0%
AGCAATAAAGCTGACAATAC+GGG - chr4_1:44988445-44988464 Msa0549780:intron 35.0%
TACGGGTAAATGTCTATTGT+TGG - chr4_1:44988462-44988481 Msa0549780:intron 35.0%
CCCAATTAGTTACTGATAAC+AGG + chr4_1:44988586-44988605 None:intergenic 35.0%
AAAACCACTGTTAATTGGGA+TGG - chr4_1:44988836-44988855 Msa0549780:CDS 35.0%
AAATCCATCCCAATTAACAG+TGG + chr4_1:44988843-44988862 None:intergenic 35.0%
GTTGTTGTAACATGAGAAAG+CGG - chr4_1:44988985-44989004 Msa0549780:CDS 35.0%
ATCAAGAGAAATCAGCTGAG+CGG - chr4_1:44987764-44987783 Msa0549780:CDS 40.0%
! AGTCTGTGTGAGCTTTATAC+CGG + chr4_1:44987828-44987847 None:intergenic 40.0%
! GCTTTATTGCTCCAACAAAC+TGG + chr4_1:44988436-44988455 None:intergenic 40.0%
AGCATAAAGAGAGAAGCAAC+GGG + chr4_1:44988532-44988551 None:intergenic 40.0%
CAGCATAAAGAGAGAAGCAA+CGG + chr4_1:44988533-44988552 None:intergenic 40.0%
TGTGGGAGATCATAGTTGTA+TGG - chr4_1:44988765-44988784 Msa0549780:intron 40.0%
GTGGGAGATCATAGTTGTAT+GGG - chr4_1:44988766-44988785 Msa0549780:intron 40.0%
TGGGAGATCATAGTTGTATG+GGG - chr4_1:44988767-44988786 Msa0549780:intron 40.0%
GATCATAGTTGTATGGGGAT+CGG - chr4_1:44988772-44988791 Msa0549780:intron 40.0%
TGTATATATGCTGCAAGCGT+AGG - chr4_1:44989131-44989150 Msa0549780:CDS 40.0%
CTTAATCAGTCAGAAGAGAG+TGG - chr4_1:44989167-44989186 Msa0549780:CDS 40.0%
AAAAAAGCCACCTTCTTCTC+TGG + chr4_1:44989213-44989232 None:intergenic 40.0%
TTTCTGTCTACAACTTCAGC+TGG + chr4_1:44989248-44989267 None:intergenic 40.0%
ATCAAGAGAAATCAGCTGAG+CGG - chr4_1:44987764-44987783 Msa0549780:CDS 40.0%
! AGTCTGTGTGAGCTTTATAC+CGG + chr4_1:44987828-44987847 None:intergenic 40.0%
! GCTTTATTGCTCCAACAAAC+TGG + chr4_1:44988436-44988455 None:intergenic 40.0%
AGCATAAAGAGAGAAGCAAC+GGG + chr4_1:44988532-44988551 None:intergenic 40.0%
CAGCATAAAGAGAGAAGCAA+CGG + chr4_1:44988533-44988552 None:intergenic 40.0%
TGTGGGAGATCATAGTTGTA+TGG - chr4_1:44988765-44988784 Msa0549780:intron 40.0%
GTGGGAGATCATAGTTGTAT+GGG - chr4_1:44988766-44988785 Msa0549780:intron 40.0%
TGGGAGATCATAGTTGTATG+GGG - chr4_1:44988767-44988786 Msa0549780:intron 40.0%
GATCATAGTTGTATGGGGAT+CGG - chr4_1:44988772-44988791 Msa0549780:intron 40.0%
TGTATATATGCTGCAAGCGT+AGG - chr4_1:44989131-44989150 Msa0549780:CDS 40.0%
CTTAATCAGTCAGAAGAGAG+TGG - chr4_1:44989167-44989186 Msa0549780:CDS 40.0%
AAAAAAGCCACCTTCTTCTC+TGG + chr4_1:44989213-44989232 None:intergenic 40.0%
TTTCTGTCTACAACTTCAGC+TGG + chr4_1:44989248-44989267 None:intergenic 40.0%
TCAAGAGAAATCAGCTGAGC+GGG - chr4_1:44987765-44987784 Msa0549780:CDS 45.0%
CTTCAGAGCTTCCAGTTTGT+TGG - chr4_1:44988422-44988441 Msa0549780:intron 45.0%
GAAGCAACGGGATAATACGA+GGG + chr4_1:44988520-44988539 None:intergenic 45.0%
AGAAGCAACGGGATAATACG+AGG + chr4_1:44988521-44988540 None:intergenic 45.0%
GTCTCAACACGTACACTTTG+TGG - chr4_1:44988647-44988666 Msa0549780:CDS 45.0%
CGTACACTTTGTGGTCATGT+TGG - chr4_1:44988656-44988675 Msa0549780:CDS 45.0%
!!! GTATGGGGATCGGTTAGTTT+TGG - chr4_1:44988782-44988801 Msa0549780:CDS 45.0%
TCAAGAGAAATCAGCTGAGC+GGG - chr4_1:44987765-44987784 Msa0549780:CDS 45.0%
CTTCAGAGCTTCCAGTTTGT+TGG - chr4_1:44988422-44988441 Msa0549780:intron 45.0%
GAAGCAACGGGATAATACGA+GGG + chr4_1:44988520-44988539 None:intergenic 45.0%
AGAAGCAACGGGATAATACG+AGG + chr4_1:44988521-44988540 None:intergenic 45.0%
GTCTCAACACGTACACTTTG+TGG - chr4_1:44988647-44988666 Msa0549780:CDS 45.0%
CGTACACTTTGTGGTCATGT+TGG - chr4_1:44988656-44988675 Msa0549780:CDS 45.0%
!!! GTATGGGGATCGGTTAGTTT+TGG - chr4_1:44988782-44988801 Msa0549780:CDS 45.0%
GGGCAAAGAGGGATCTCTAT+AGG - chr4_1:44987785-44987804 Msa0549780:CDS 50.0%
GGATCAACAGCAGCAGTTAG+AGG - chr4_1:44988098-44988117 Msa0549780:intron 50.0%
GGGATAATACGAGGGAGTTG+CGG + chr4_1:44988512-44988531 None:intergenic 50.0%
GGGCAAAGAGGGATCTCTAT+AGG - chr4_1:44987785-44987804 Msa0549780:CDS 50.0%
GGATCAACAGCAGCAGTTAG+AGG - chr4_1:44988098-44988117 Msa0549780:intron 50.0%
GGGATAATACGAGGGAGTTG+CGG + chr4_1:44988512-44988531 None:intergenic 50.0%
AATCAGCTGAGCGGGCAAAG+AGG - chr4_1:44987773-44987792 Msa0549780:CDS 55.0%
ATCAGCTGAGCGGGCAAAGA+GGG - chr4_1:44987774-44987793 Msa0549780:CDS 55.0%
CGTAAGCGTGCCAGAGAAGA+AGG - chr4_1:44989200-44989219 Msa0549780:exon 55.0%
AAGCGTGCCAGAGAAGAAGG+TGG - chr4_1:44989203-44989222 Msa0549780:exon 55.0%
AATCAGCTGAGCGGGCAAAG+AGG - chr4_1:44987773-44987792 Msa0549780:CDS 55.0%
ATCAGCTGAGCGGGCAAAGA+GGG - chr4_1:44987774-44987793 Msa0549780:CDS 55.0%
CGTAAGCGTGCCAGAGAAGA+AGG - chr4_1:44989200-44989219 Msa0549780:exon 55.0%
AAGCGTGCCAGAGAAGAAGG+TGG - chr4_1:44989203-44989222 Msa0549780:exon 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 44987754 44989271 44987754 ID=Msa0549780;Name=Msa0549780
chr4_1 mRNA 44987754 44989271 44987754 ID=Msa0549780-mRNA-1;Parent=Msa0549780;Name=Msa0549780-mRNA-1;_AED=0.29;_eAED=0.29;_QI=57|0.5|0.66|1|1|1|3|0|246
chr4_1 exon 44987754 44987920 44987754 ID=Msa0549780-mRNA-1:exon:11796;Parent=Msa0549780-mRNA-1
chr4_1 exon 44988559 44988695 44988559 ID=Msa0549780-mRNA-1:exon:11795;Parent=Msa0549780-mRNA-1
chr4_1 exon 44988778 44989271 44988778 ID=Msa0549780-mRNA-1:exon:11794;Parent=Msa0549780-mRNA-1
chr4_1 five_prime_UTR 44989215 44989271 44989215 ID=Msa0549780-mRNA-1:five_prime_utr;Parent=Msa0549780-mRNA-1
chr4_1 CDS 44988778 44989214 44988778 ID=Msa0549780-mRNA-1:cds;Parent=Msa0549780-mRNA-1
chr4_1 CDS 44988559 44988695 44988559 ID=Msa0549780-mRNA-1:cds;Parent=Msa0549780-mRNA-1
chr4_1 CDS 44987754 44987920 44987754 ID=Msa0549780-mRNA-1:cds;Parent=Msa0549780-mRNA-1
Gene Sequence

>Msa0549780

ATGCATTATCATAACCGGTATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGATATCATACAAGGGAAAATTTCTATTACAGAAGAAAAACATTCTGGACGAAAAAAAACTGAACTCAATGATTATAGCTGGGTAAATAATGGACTCTTGAGACTTTTCAGATCTAGACGCGTCCTTTCATATTCATATGCGTTTGCGTTTTATATGTTTGGAGATGAGCTTTTTAAAGAACAAATGTCAGAAGCTGAAAGGGAAATGAAACAGAACTTATTTGAGGATCAACAGCAGCAGTTAGAGGCAAATGTTGAAAAACTCTCTAAGATTTTGGAGGAGCCTTTCGACACCTTTAAATATGCTAAACTTATGGAGATAAGGATGCAGATAATAACTCTGTCTGCACTCATTGATGATCTTTGTAAAAAAATGTATGAGTGCATCGACAATGATTTATTGGATTCTATTAATCTCGGTAGTGTCCACAGTATAGCACCATATAAATCAAAGGGCATAGAGAAAGCTTCAGAGCTTCCAGTTTGTTGGAGCAATAAAGCTGACAATACGGAAATGTTACTGAGTGAAAAGGATTCTTGTATATATGCTGCAAGCGTAGGTGTAACAGCAGAGCTTAATCAGTCAGAAGAGAGTGGATGTTCTTCTCGTAAGCGTGCCAGAGAAGAAGGTGGCTTTTTTGATCTAAACTTGCCAGCTGAAGTTGTAGACAGAAATTGA

Protein sequence

>Msa0549780

MHYHNRYKAHTDSFKLESKLKDIIQGKISITEEKHSGRKKTELNDYSWVNNGLLRLFRSRRVLSYSYAFAFYMFGDELFKEQMSEAEREMKQNLFEDQQQQLEANVEKLSKILEEPFDTFKYAKLMEIRMQIITLSALIDDLCKKMYECIDNDLLDSINLGSVHSIAPYKSKGIEKASELPVCWSNKADNTEMLLSEKDSCIYAASVGVTAELNQSEESGCSSRKRAREEGGFFDLNLPAEVVDRN*