AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1093100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093100 MtrunA17_Chr7g0227301 96.802 344 11 0 1 344 1 344 0.0 697
Msa1093100 MtrunA17_Chr6g0449451 65.607 346 111 2 3 344 40 381 2.25e-163 461
Msa1093100 MtrunA17_Chr5g0446741 49.315 292 137 4 2 292 55 336 7.30e-101 304
Msa1093100 MtrunA17_Chr3g0078811 52.381 231 110 0 2 232 55 285 5.83e-92 277
Msa1093100 MtrunA17_Chr6g0449431 54.450 191 59 5 102 291 19 182 1.28e-62 201
Msa1093100 MtrunA17_Chr6g0449421 47.328 131 34 1 17 147 1 96 1.42e-33 120
Msa1093100 MtrunA17_Chr6g0449411 72.500 40 11 0 151 190 24 63 2.33e-15 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1093100 AT5G40510.1 47.507 341 158 5 5 344 13 333 5.67e-112 329
Msa1093100 AT5G40510.2 47.507 341 158 5 5 344 49 369 2.60e-111 328
Msa1093100 AT3G27570.2 51.775 338 141 7 11 344 21 340 2.79e-105 312
Msa1093100 AT3G27570.1 51.775 338 141 7 11 344 60 379 9.72e-105 312
Msa1093100 AT4G26620.1 47.297 296 140 4 9 292 62 353 4.32e-96 292
Msa1093100 AT5G55900.1 45.486 288 145 4 12 291 53 336 3.66e-83 258
Msa1093100 AT5G55900.2 45.652 230 113 4 70 291 7 232 1.07e-63 205

Find 103 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTCCATTAGCAAGTTTC+TGG 0.179269 7_3:-12328342 None:intergenic
AATATTCTTCTCGATCTTAT+TGG 0.182910 7_3:-12328383 None:intergenic
TCATTTGCTCCCTTCACTTC+TGG 0.191464 7_3:-12328319 None:intergenic
GACCTGTATTTAACCATTTC+CGG 0.202413 7_3:-12324159 None:intergenic
AAGCTCTGATAATGTGTTCT+AGG 0.209847 7_3:+12328640 Msa1093100:three_prime_UTR
TGTACATCGACCAAAATAAT+AGG 0.223820 7_3:-12328675 None:intergenic
GACTTACATAGACGCTTTAT+TGG 0.224630 7_3:+12328736 Msa1093100:three_prime_UTR
TTCTCTTCTCTTCATTTCAA+TGG 0.287884 7_3:+12323773 Msa1093100:exon
ATCAGTCACACAAGACAAAA+TGG 0.317054 7_3:-12328859 None:intergenic
GGTTGTTGCCAGGGTGTTAA+TGG 0.328003 7_3:+12328442 Msa1093100:CDS
GAACGTGTCGGCGACGAGTT+TGG 0.328105 7_3:-12323958 None:intergenic
TTCTTTAATTGAAAGGGGTT+TGG 0.346056 7_3:+12326187 Msa1093100:intron
AACGTGTCGGCGACGAGTTT+GGG 0.361998 7_3:-12323957 None:intergenic
ACCTGTATTTAACCATTTCC+GGG 0.368996 7_3:-12324158 None:intergenic
AATGACAAACCATGGGCTAT+TGG 0.386856 7_3:+12326251 Msa1093100:CDS
CTCACAGCCGTTGGTGTGCT+TGG 0.388801 7_3:+12328562 Msa1093100:CDS
TGTTACTGCCTGTTCTCACC+TGG 0.390483 7_3:+12326415 Msa1093100:CDS
TCCCGGAAATGGTTAAATAC+AGG 0.396178 7_3:+12324157 Msa1093100:CDS
TTAAAATTATTGATGAGAAC+TGG 0.408427 7_3:-12326353 None:intergenic
AGTAAATCAGGAATATCATT+AGG 0.409424 7_3:-12326617 None:intergenic
CATTTCAGGGCGAGTGAAAC+CGG 0.413889 7_3:-12323820 None:intergenic
ATATGTTGGTCAAGTAAATC+AGG 0.426210 7_3:-12326629 None:intergenic
AGCTTCGACGCGTGGTGGCC+AGG 0.426267 7_3:-12323916 None:intergenic
CTTGACCAACATATTGCAAA+AGG 0.428529 7_3:+12326638 Msa1093100:CDS
AAATTGTTATAGGGGCCAAA+TGG 0.432326 7_3:+12328285 Msa1093100:intron
GAGAGGTTATACAGCGACTT+TGG 0.437560 7_3:+12326660 Msa1093100:CDS
GTACATCGACCAAAATAATA+GGG 0.442338 7_3:-12328674 None:intergenic
CTGGAACAGACGGTCCCATT+TGG 0.443282 7_3:-12328300 None:intergenic
GCTAATGGAAACCTTGCTAA+TGG 0.444916 7_3:+12328352 Msa1093100:CDS
AATGACCAGAAACTTGCTAA+TGG 0.446578 7_3:+12328337 Msa1093100:CDS
ATTATGATTGTATACGCTGC+TGG 0.458679 7_3:+12328831 Msa1093100:three_prime_UTR
CTGGGTGGGCACAAATATGC+TGG 0.460557 7_3:+12326434 Msa1093100:CDS
TAAGATCCGGTCTCTATTGA+AGG 0.461421 7_3:+12328528 Msa1093100:CDS
TACAAACTTTACAGAAGGTC+AGG 0.466951 7_3:+12328610 Msa1093100:CDS
TTTAATTGAAAGGGGTTTGG+TGG 0.467015 7_3:+12326190 Msa1093100:intron
GAAACCGGTGTCGGTGGAAG+AGG 0.475449 7_3:-12323805 None:intergenic
AATTGTTATAGGGGCCAAAT+GGG 0.477174 7_3:+12328286 Msa1093100:intron
ATTAACACCCTGGCAACAAC+CGG 0.479888 7_3:-12328440 None:intergenic
ACCATGGGCTATTGGAGTAC+CGG 0.480350 7_3:+12326259 Msa1093100:CDS
TTGAAAGTAACAGCTTGAGC+AGG 0.482858 7_3:+12328404 Msa1093100:CDS
AAATGTGACCGGTTGTTGCC+AGG 0.483186 7_3:+12328432 Msa1093100:CDS
CATGTCTATGTATGTGCTCA+TGG 0.484140 7_3:+12326299 Msa1093100:CDS
TGAAATGAAATGAAAATGAA+AGG 0.499375 7_3:-12323720 None:intergenic
GTCGTAGGCGTCGACGGTGC+CGG 0.502129 7_3:-12323859 None:intergenic
CGCGTGGTGGCCAGGAGAGG+TGG 0.507882 7_3:-12323908 None:intergenic
AATGAGGAAATTGAGCTTCG+AGG 0.511233 7_3:+12326374 Msa1093100:CDS
CTGCCTGTTCTCACCTGGGT+GGG 0.524045 7_3:+12326420 Msa1093100:CDS
CACGCTCCTTCAATAGAGAC+CGG 0.524633 7_3:-12328534 None:intergenic
AGCTGTGGCGGCTGTTGCTG+TGG 0.525482 7_3:+12328585 Msa1093100:CDS
AATTGAGCTTCGAGGTATGA+AGG 0.532672 7_3:+12326382 Msa1093100:CDS
GAAATGAAATGAAAATGAAA+GGG 0.533121 7_3:-12323719 None:intergenic
TAAGAACGATTTAGCTCTCA+AGG 0.538372 7_3:+12323989 Msa1093100:CDS
ACCGTCTGTTCCAGAAGTGA+AGG 0.545620 7_3:+12328309 Msa1093100:CDS
ACGCTTTATTGGTCTGTCAA+AGG 0.548207 7_3:+12328747 Msa1093100:three_prime_UTR
CCCTTCACTTCTGGAACAGA+CGG 0.550137 7_3:-12328310 None:intergenic
GTTGTGATGAAAGCTTATGC+TGG 0.556994 7_3:+12328902 Msa1093100:three_prime_UTR
CACAGCTCCAAGCACACCAA+CGG 0.557893 7_3:-12328569 None:intergenic
AGGGCAAAAGCTGTAAGATC+CGG 0.558031 7_3:+12328515 Msa1093100:CDS
CGTTGGTGTGCTTGGAGCTG+TGG 0.558144 7_3:+12328570 Msa1093100:CDS
ATGTTAGATGTGGTACTTGT+GGG 0.558414 7_3:+12326330 Msa1093100:CDS
GCGAGTGAAACCGGTGTCGG+TGG 0.561154 7_3:-12323811 None:intergenic
AGGTTATACAGCGACTTTGG+AGG 0.561414 7_3:+12326663 Msa1093100:CDS
TTATGATTGTATACGCTGCT+GGG 0.561845 7_3:+12328832 Msa1093100:three_prime_UTR
CGACGCGTGGTGGCCAGGAG+AGG 0.563545 7_3:-12323911 None:intergenic
AATATAATCATATACAGTCC+AGG 0.566358 7_3:+12326458 Msa1093100:CDS
TGGCATGATCTCCATTAGCA+AGG 0.576063 7_3:-12328363 None:intergenic
GTGACGGTCGTAGGCGTCGA+CGG 0.576104 7_3:-12323865 None:intergenic
GAGGAAAACGTGACGGTCGT+AGG 0.577383 7_3:-12323874 None:intergenic
TCGGCGACGAGTTTGGGAAG+AGG 0.585120 7_3:-12323951 None:intergenic
AGCAGGGAAGAAAATGTGAC+CGG 0.587932 7_3:+12328421 Msa1093100:CDS
TCGTCGGAAGCTTCGACGCG+TGG 0.588689 7_3:-12323924 None:intergenic
GGTGTCGGTGGAAGAGGTAT+CGG 0.594732 7_3:-12323799 None:intergenic
CTTACGAGCTTTGAACGTGT+CGG 0.595024 7_3:-12323970 None:intergenic
AATGTGACCGGTTGTTGCCA+GGG 0.595090 7_3:+12328433 Msa1093100:CDS
TGTGAACCAGTTAAAACCTC+CGG 0.597379 7_3:-12326278 None:intergenic
TGGCTTACAAACTTTACAGA+AGG 0.599328 7_3:+12328605 Msa1093100:CDS
CGTGAAATTCTCACAGCCGT+TGG 0.599346 7_3:+12328553 Msa1093100:CDS
AATCATATACAGTCCAGGAC+CGG 0.601663 7_3:+12326463 Msa1093100:CDS
TGTGAAGCAAGTGAGGAAGC+TGG 0.604471 7_3:+12324108 Msa1093100:CDS
CACTGTGTGTGAAGCAAGTG+AGG 0.604804 7_3:+12324101 Msa1093100:CDS
CAGCATATTTGTGCCCACCC+AGG 0.606423 7_3:-12326433 None:intergenic
TGAAAGTAACAGCTTGAGCA+GGG 0.608838 7_3:+12328405 Msa1093100:CDS
AGGGCGAGTGAAACCGGTGT+CGG 0.609361 7_3:-12323814 None:intergenic
TGGGTGGGCACAAATATGCT+GGG 0.610664 7_3:+12326435 Msa1093100:CDS
TCGGAAGCTTCGACGCGTGG+TGG 0.614659 7_3:-12323921 None:intergenic
GATACCTCTTCCACCGACAC+CGG 0.614764 7_3:+12323801 Msa1093100:CDS
TCCGGTACTCCAATAGCCCA+TGG 0.617878 7_3:-12326260 None:intergenic
TGGTGTGCTTGGAGCTGTGG+CGG 0.621220 7_3:+12328573 Msa1093100:CDS
CGACGAGTTTGGGAAGAGGA+TGG 0.621819 7_3:-12323947 None:intergenic
ACTGCCTGTTCTCACCTGGG+TGG 0.624663 7_3:+12326419 Msa1093100:CDS
GATGTTAGATGTGGTACTTG+TGG 0.628165 7_3:+12326329 Msa1093100:CDS
CCAACATATTGCAAAAGGAG+AGG 0.631853 7_3:+12326643 Msa1093100:CDS
GAGGAAGCTGGATTCTCCGA+CGG 0.634432 7_3:+12324120 Msa1093100:CDS
CCGTCTGTTCCAGAAGTGAA+GGG 0.644749 7_3:+12328310 Msa1093100:CDS
GAAAATCAAAACGTCACCGT+CGG 0.648268 7_3:-12324136 None:intergenic
ATGGGCTATTGGAGTACCGG+AGG 0.649138 7_3:+12326262 Msa1093100:CDS
TTTGGGAAGAGGATGGTCGT+CGG 0.656732 7_3:-12323940 None:intergenic
TGTAGTAGAGGAAAACGTGA+CGG 0.664243 7_3:-12323881 None:intergenic
ATATACAGTCCAGGACCGGA+CGG 0.667024 7_3:+12326467 Msa1093100:CDS
AAGTACCACATCTAACATCA+CGG 0.668565 7_3:-12326325 None:intergenic
AAGAAACTCCATTAACACCC+TGG 0.672432 7_3:-12328450 None:intergenic
TTTGGTGAATGACAAACCAT+GGG 0.687413 7_3:+12326244 Msa1093100:CDS
GGAAGCCGTGATGTTAGATG+TGG 0.713083 7_3:+12326320 Msa1093100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAAAATTAAAAAAAAA+AGG - chr7_3:12328233-12328252 None:intergenic 0.0%
!!! TTTTTTTTTAATTTTTATAA+CGG + chr7_3:12328233-12328252 Msa1093100:intron 0.0%
!!! TTTCTATTTTTGTTTATTTA+TGG + chr7_3:12324221-12324240 Msa1093100:intron 10.0%
!!! AACTCATTATTTTATTAAAA+AGG - chr7_3:12324329-12324348 None:intergenic 10.0%
!! TTTAAAAAGTGATTATTATT+CGG + chr7_3:12324545-12324564 Msa1093100:intron 10.0%
!!! TTTTCAAAATTAAATAATTG+TGG - chr7_3:12324962-12324981 None:intergenic 10.0%
!! TTAATGAAATGAAAATTTAA+AGG + chr7_3:12326719-12326738 Msa1093100:intron 10.0%
!! AATAATATATATTAATTGTC+TGG - chr7_3:12327557-12327576 None:intergenic 10.0%
!! AAATACATATTTGAATATAA+TGG + chr7_3:12327880-12327899 Msa1093100:intron 10.0%
!! AATACATATTTGAATATAAT+GGG + chr7_3:12327881-12327900 Msa1093100:intron 10.0%
!! AAACTTATTTAAATTGTTAT+AGG + chr7_3:12328275-12328294 Msa1093100:intron 10.0%
!! AACTTATTTAAATTGTTATA+GGG + chr7_3:12328276-12328295 Msa1093100:intron 10.0%
!! TTTAAAAAACTATAACTAAC+TGG - chr7_3:12324294-12324313 None:intergenic 15.0%
!!! AGTATATAAAATGGATTTTT+TGG - chr7_3:12324498-12324517 None:intergenic 15.0%
!! TTAGATACAAGTATATAAAA+TGG - chr7_3:12324507-12324526 None:intergenic 15.0%
!! TTAAAAAGTGATTATTATTC+GGG + chr7_3:12324546-12324565 Msa1093100:intron 15.0%
!!! TTTTTATGTTGGTAAATTAA+AGG - chr7_3:12324678-12324697 None:intergenic 15.0%
!! TCAATTAAAGAAATGAAAAT+TGG - chr7_3:12326179-12326198 None:intergenic 15.0%
!!! TTTTCATTTCTTTAATTGAA+AGG + chr7_3:12326180-12326199 Msa1093100:intron 15.0%
!! TTTCATTTCTTTAATTGAAA+GGG + chr7_3:12326181-12326200 Msa1093100:intron 15.0%
!!! TTCTCTTTATTTGTATATAA+AGG + chr7_3:12326886-12326905 Msa1093100:intron 15.0%
!!! TCTCTTTATTTGTATATAAA+GGG + chr7_3:12326887-12326906 Msa1093100:intron 15.0%
!! ACTTATTTAAATTGTTATAG+GGG + chr7_3:12328277-12328296 Msa1093100:intron 15.0%
!! GAAATGAAATGAAAATGAAA+GGG - chr7_3:12323722-12323741 None:intergenic 20.0%
!! TGAAATGAAATGAAAATGAA+AGG - chr7_3:12323723-12323742 None:intergenic 20.0%
!!! CTATTTTTGTTTATTTATGG+TGG + chr7_3:12324224-12324243 Msa1093100:intron 20.0%
!!! TTATTTTAATCCGTAACAAA+CGG + chr7_3:12324651-12324670 Msa1093100:intron 20.0%
!!! TAAAAATCACGTTTTTATGT+TGG - chr7_3:12324689-12324708 None:intergenic 20.0%
!!! AAGTTTCTGTATAATTTTGA+TGG - chr7_3:12324853-12324872 None:intergenic 20.0%
!! TTCAAAATAGGTTATCATTA+AGG + chr7_3:12325020-12325039 Msa1093100:intron 20.0%
!!! TTTTCCTACGATTTTTTTTT+GGG - chr7_3:12325066-12325085 None:intergenic 20.0%
!! GAAAGTTTCTAATGAAAAAT+TGG - chr7_3:12325123-12325142 None:intergenic 20.0%
!! TAAAAAAATCTATGACAAAC+AGG + chr7_3:12325206-12325225 Msa1093100:intron 20.0%
!! TGTTATATGATTCTATGTTT+CGG + chr7_3:12325255-12325274 Msa1093100:intron 20.0%
!! AAAACAAAGATACAAAAAGA+TGG - chr7_3:12325634-12325653 None:intergenic 20.0%
!!! AAAAAAGATTTTCATGTTTG+TGG + chr7_3:12325721-12325740 Msa1093100:intron 20.0%
!!! AAAAAGATTTTCATGTTTGT+GGG + chr7_3:12325722-12325741 Msa1093100:intron 20.0%
!!! CTAGCTTTAAATTAGAAATT+AGG + chr7_3:12325801-12325820 Msa1093100:intron 20.0%
!! AAAAAAAACTCTTGAAGAAA+AGG - chr7_3:12326071-12326090 None:intergenic 20.0%
!! TTCATTTCTTTAATTGAAAG+GGG + chr7_3:12326182-12326201 Msa1093100:intron 20.0%
!! TTAAAATTATTGATGAGAAC+TGG - chr7_3:12326356-12326375 None:intergenic 20.0%
!!! TCTCATCAATAATTTTAATG+AGG + chr7_3:12326358-12326377 Msa1093100:CDS 20.0%
!! ACATACTAATAATTGTTTAC+AGG + chr7_3:12326579-12326598 Msa1093100:intron 20.0%
!!! ATTCTTATAGAAGTATTTAC+TGG + chr7_3:12326791-12326810 Msa1093100:intron 20.0%
!!! CTCTTTATTTGTATATAAAG+GGG + chr7_3:12326888-12326907 Msa1093100:intron 20.0%
!! TAATTAAGGAAGGAAAAAAA+GGG - chr7_3:12327069-12327088 None:intergenic 20.0%
!! TAGACTTACAAAAATGATAA+TGG + chr7_3:12327159-12327178 Msa1093100:intron 20.0%
!! TGGTATCAATAAGTTATAAT+AGG + chr7_3:12327322-12327341 Msa1093100:intron 20.0%
!! TCAGATAATAATCATAACAA+AGG - chr7_3:12328071-12328090 None:intergenic 20.0%
!! AAAAAAAGACAAGATTAAAG+AGG + chr7_3:12328495-12328514 Msa1093100:CDS 20.0%
!! AAAAAAGACAAGATTAAAGA+GGG + chr7_3:12328496-12328515 Msa1093100:CDS 20.0%
! AAACTTCTGTCAATTGATAA+AGG + chr7_3:12324867-12324886 Msa1093100:intron 25.0%
! TGAGAAGCTATATTCAAAAT+AGG + chr7_3:12325008-12325027 Msa1093100:intron 25.0%
! ATTACCCAAAAAAAAATCGT+AGG + chr7_3:12325059-12325078 Msa1093100:intron 25.0%
!!! CTTTTCCTACGATTTTTTTT+TGG - chr7_3:12325067-12325086 None:intergenic 25.0%
! CAAAAAAAAATCGTAGGAAA+AGG + chr7_3:12325065-12325084 Msa1093100:intron 25.0%
! ACTTGCTCATAATAGATTAA+GGG - chr7_3:12325232-12325251 None:intergenic 25.0%
! TACTTGCTCATAATAGATTA+AGG - chr7_3:12325233-12325252 None:intergenic 25.0%
! TTGATATGAAACTAACTGTA+TGG + chr7_3:12325309-12325328 Msa1093100:intron 25.0%
!!! TTTTCATGTTTTGGTTTTCT+TGG + chr7_3:12325333-12325352 Msa1093100:intron 25.0%
! TCAATGTCTCTCATATATAT+AGG + chr7_3:12325437-12325456 Msa1093100:intron 25.0%
! CAATGTCTCTCATATATATA+GGG + chr7_3:12325438-12325457 Msa1093100:intron 25.0%
! AGACTGGATTTCTTAATTAT+AGG + chr7_3:12325566-12325585 Msa1093100:intron 25.0%
! TCTTCTTATGATATATTTCC+TGG + chr7_3:12325655-12325674 Msa1093100:intron 25.0%
! CTTCTTATGATATATTTCCT+GGG + chr7_3:12325656-12325675 Msa1093100:intron 25.0%
! TTCTTATGATATATTTCCTG+GGG + chr7_3:12325657-12325676 Msa1093100:intron 25.0%
! ATATTTCTTTGACTGCATAA+TGG + chr7_3:12325831-12325850 Msa1093100:intron 25.0%
! ATGTGATTACATTAAATCAC+TGG + chr7_3:12325901-12325920 Msa1093100:intron 25.0%
!!! TGGTTTTCTCAAGTTATTTT+TGG + chr7_3:12325921-12325940 Msa1093100:intron 25.0%
!! TCGTGTTTCTATGTTAAATT+TGG + chr7_3:12326090-12326109 Msa1093100:intron 25.0%
! AATATAATCATATACAGTCC+AGG + chr7_3:12326458-12326477 Msa1093100:CDS 25.0%
! AAATGATTCAAAATTTGAGG+TGG - chr7_3:12326535-12326554 None:intergenic 25.0%
! CTAATAATTGTTTACAGGTA+CGG + chr7_3:12326584-12326603 Msa1093100:intron 25.0%
! AGTAAATCAGGAATATCATT+AGG - chr7_3:12326620-12326639 None:intergenic 25.0%
! AATTAAGGAAGGAAAAAAAG+GGG - chr7_3:12327068-12327087 None:intergenic 25.0%
! GTAATTAAGGAAGGAAAAAA+AGG - chr7_3:12327070-12327089 None:intergenic 25.0%
!! CATTTTTGTAAGTCTATGAT+AGG - chr7_3:12327155-12327174 None:intergenic 25.0%
! TAGGAGAAAAAAAATTGAGA+TGG - chr7_3:12327285-12327304 None:intergenic 25.0%
! ACTTATTGATACCAACAAAA+TGG - chr7_3:12327316-12327335 None:intergenic 25.0%
!!! AGTTTAAGTTTTTCCAGTTA+TGG + chr7_3:12327386-12327405 Msa1093100:intron 25.0%
!!! GTTTAAGTTTTTCCAGTTAT+GGG + chr7_3:12327387-12327406 Msa1093100:intron 25.0%
! AAATGCTTATAACCAAACTA+AGG - chr7_3:12327421-12327440 None:intergenic 25.0%
! AATTAGCTATGAGAAATACT+TGG - chr7_3:12327445-12327464 None:intergenic 25.0%
! AAGTATTTCTCATAGCTAAT+TGG + chr7_3:12327444-12327463 Msa1093100:intron 25.0%
!!! GCTCAACTATTTCTATTTTA+TGG - chr7_3:12327535-12327554 None:intergenic 25.0%
! ATACGATTCAATTTAGTACA+AGG - chr7_3:12327846-12327865 None:intergenic 25.0%
! GTACTAAATTGAATCGTATA+TGG + chr7_3:12327847-12327866 Msa1093100:intron 25.0%
! TTAGTTATGAACAACATTTC+AGG + chr7_3:12327941-12327960 Msa1093100:intron 25.0%
!! GTTTTACCATTTATAACCAA+AGG + chr7_3:12328125-12328144 Msa1093100:intron 25.0%
! TATTACATTATGTGACTAAC+TGG - chr7_3:12328197-12328216 None:intergenic 25.0%
! AATATTCTTCTCGATCTTAT+TGG - chr7_3:12328386-12328405 None:intergenic 25.0%
!!! TTAATCTTGTCTTTTTTTGC+AGG - chr7_3:12328493-12328512 None:intergenic 25.0%
TTCTCTTCTCTTCATTTCAA+TGG + chr7_3:12323773-12323792 Msa1093100:exon 30.0%
!!! ATAACGAGTGTCGAAATTTT+AGG - chr7_3:12324187-12324206 None:intergenic 30.0%
AAATTTCGACACTCGTTATT+AGG + chr7_3:12324188-12324207 Msa1093100:intron 30.0%
AATTTCGACACTCGTTATTA+GGG + chr7_3:12324189-12324208 Msa1093100:intron 30.0%
AAATTGCTTCAGTGTATTGA+TGG + chr7_3:12324250-12324269 Msa1093100:intron 30.0%
! AATTAAAGGACCGTTTGTTA+CGG - chr7_3:12324664-12324683 None:intergenic 30.0%
GAATCTCATTTGAACTCATT+TGG + chr7_3:12324736-12324755 Msa1093100:intron 30.0%
TAAATAATTGTGGTTCCTCT+TGG - chr7_3:12324952-12324971 None:intergenic 30.0%
! CTGTATGGATTTTCATGTTT+TGG + chr7_3:12325324-12325343 Msa1093100:intron 30.0%
AGTCTTCAAAAATTGTTCCT+TGG + chr7_3:12325362-12325381 Msa1093100:intron 30.0%
!! ACTGTTTGTTTCTCTTTTCT+AGG + chr7_3:12325407-12325426 Msa1093100:intron 30.0%
ACATTGTTGAACCAAGAATA+AGG - chr7_3:12325511-12325530 None:intergenic 30.0%
AGGTCAATGTTGAATTTGTA+AGG + chr7_3:12325539-12325558 Msa1093100:intron 30.0%
GAATTTGTAAGGAATAAGAC+TGG + chr7_3:12325550-12325569 Msa1093100:intron 30.0%
AAAGATACAAAAAGATGGAG+GGG - chr7_3:12325629-12325648 None:intergenic 30.0%
CAAAGATACAAAAAGATGGA+GGG - chr7_3:12325630-12325649 None:intergenic 30.0%
ACAAAGATACAAAAAGATGG+AGG - chr7_3:12325631-12325650 None:intergenic 30.0%
! CTTGTATATTTGAGATCGAA+TGG + chr7_3:12326022-12326041 Msa1093100:intron 30.0%
! ATTGATGAATGAGGGTTTTT+GGG + chr7_3:12326118-12326137 Msa1093100:intron 30.0%
TTCTTTAATTGAAAGGGGTT+TGG + chr7_3:12326187-12326206 Msa1093100:intron 30.0%
!!! GAGCTTTTTTGAAGATGTTT+TGG + chr7_3:12326226-12326245 Msa1093100:CDS 30.0%
GCGAAATGATTCAAAATTTG+AGG - chr7_3:12326538-12326557 None:intergenic 30.0%
ATATGTTGGTCAAGTAAATC+AGG - chr7_3:12326632-12326651 None:intergenic 30.0%
GTATATAAAGGGGAATTCTT+AGG + chr7_3:12326898-12326917 Msa1093100:intron 30.0%
! ACGGAATAAGTTTTCTCTTT+AGG + chr7_3:12326935-12326954 Msa1093100:intron 30.0%
! CGGAATAAGTTTTCTCTTTA+GGG + chr7_3:12326936-12326955 Msa1093100:intron 30.0%
AAACAGATGGTAATTAAGGA+AGG - chr7_3:12327079-12327098 None:intergenic 30.0%
GATGAAACAGATGGTAATTA+AGG - chr7_3:12327083-12327102 None:intergenic 30.0%
AATTCATAGTAACACAACCA+AGG - chr7_3:12327111-12327130 None:intergenic 30.0%
! TTGTGTTACTATGAATTCGT+TGG + chr7_3:12327114-12327133 Msa1093100:intron 30.0%
CAACAAAATGGACAAAAGAT+AGG - chr7_3:12327304-12327323 None:intergenic 30.0%
! CTATCTTTTGTCCATTTTGT+TGG + chr7_3:12327302-12327321 Msa1093100:intron 30.0%
CTGGAAAAACTTAAACTCAA+GGG - chr7_3:12327383-12327402 None:intergenic 30.0%
ACTGGAAAAACTTAAACTCA+AGG - chr7_3:12327384-12327403 None:intergenic 30.0%
TTCGACAAAGTCAATGAAAT+GGG - chr7_3:12327500-12327519 None:intergenic 30.0%
ATTCGACAAAGTCAATGAAA+TGG - chr7_3:12327501-12327520 None:intergenic 30.0%
!! CATTCTGATTTGGTATTGAA+TGG + chr7_3:12327607-12327626 Msa1093100:intron 30.0%
ACAAGCAGTATATTTCTTCA+AGG - chr7_3:12327638-12327657 None:intergenic 30.0%
! TTGTTGCCAATCTTTGAAAA+AGG + chr7_3:12327755-12327774 Msa1093100:intron 30.0%
! TGTTGCCAATCTTTGAAAAA+GGG + chr7_3:12327756-12327775 Msa1093100:intron 30.0%
! TCTTTGATTTAGCAGCTATT+AGG - chr7_3:12327979-12327998 None:intergenic 30.0%
AATAGCTGCTAAATCAAAGA+TGG + chr7_3:12327979-12327998 Msa1093100:intron 30.0%
TGCTAAATCAAAGATGGTTA+TGG + chr7_3:12327985-12328004 Msa1093100:intron 30.0%
TATAAATGGTAAAACCAGCA+TGG - chr7_3:12328120-12328139 None:intergenic 30.0%
TTACCATTTATAACCAAAGG+AGG + chr7_3:12328128-12328147 Msa1093100:intron 30.0%
!!! AATGTGTTCTAGGTTTTTTG+TGG + chr7_3:12328650-12328669 Msa1093100:three_prime_UTR 30.0%
! TTTTGTGGACCCTATTATTT+TGG + chr7_3:12328665-12328684 Msa1093100:three_prime_UTR 30.0%
GTACATCGACCAAAATAATA+GGG - chr7_3:12328677-12328696 None:intergenic 30.0%
TGTACATCGACCAAAATAAT+AGG - chr7_3:12328678-12328697 None:intergenic 30.0%
!!! AGAGCGTTGAAAGTGTTTTT+GGG - chr7_3:12323750-12323769 None:intergenic 35.0%
!! GTTTTTCGGTGTACATTTCA+GGG - chr7_3:12323836-12323855 None:intergenic 35.0%
!! AGTTTTTCGGTGTACATTTC+AGG - chr7_3:12323837-12323856 None:intergenic 35.0%
!! TAAGAACGATTTAGCTCTCA+AGG + chr7_3:12323989-12324008 Msa1093100:CDS 35.0%
ACCTGTATTTAACCATTTCC+GGG - chr7_3:12324161-12324180 None:intergenic 35.0%
GACCTGTATTTAACCATTTC+CGG - chr7_3:12324162-12324181 None:intergenic 35.0%
!! TAACTAACTGGCTCTAAACT+TGG - chr7_3:12324282-12324301 None:intergenic 35.0%
!! TAATTTTGATGGCCCAACAT+TGG - chr7_3:12324842-12324861 None:intergenic 35.0%
ACATGTTATAGTTCGCCTAA+CGG + chr7_3:12324908-12324927 Msa1093100:intron 35.0%
AAACACCCATATTAACCGTT+AGG - chr7_3:12324926-12324945 None:intergenic 35.0%
AAATTGTTCCTTGGTCTCTT+AGG + chr7_3:12325371-12325390 Msa1093100:intron 35.0%
TGTCTCTCATATATATAGGG+AGG + chr7_3:12325441-12325460 Msa1093100:intron 35.0%
GTCTCTCATATATATAGGGA+GGG + chr7_3:12325442-12325461 Msa1093100:intron 35.0%
GCTTAACTACTCCTTATTCT+TGG + chr7_3:12325497-12325516 Msa1093100:intron 35.0%
AATTCAACATTGACCTGAGA+GGG - chr7_3:12325535-12325554 None:intergenic 35.0%
AAATTCAACATTGACCTGAG+AGG - chr7_3:12325536-12325555 None:intergenic 35.0%
AAGATACAAAAAGATGGAGG+GGG - chr7_3:12325628-12325647 None:intergenic 35.0%
TTATGATATATTTCCTGGGG+TGG + chr7_3:12325660-12325679 Msa1093100:intron 35.0%
CATAGACACAAACATGGAAA+GGG - chr7_3:12325974-12325993 None:intergenic 35.0%
ATGAAGCATAGACACAAACA+TGG - chr7_3:12325980-12325999 None:intergenic 35.0%
TGTTTGTGTCTATGCTTCAT+AGG + chr7_3:12325980-12325999 Msa1093100:intron 35.0%
! TTGGTCTTCATTGATGAATG+AGG + chr7_3:12326109-12326128 Msa1093100:intron 35.0%
TGGTCTTCATTGATGAATGA+GGG + chr7_3:12326110-12326129 Msa1093100:intron 35.0%
! CATTGATGAATGAGGGTTTT+TGG + chr7_3:12326117-12326136 Msa1093100:intron 35.0%
TTTAATTGAAAGGGGTTTGG+TGG + chr7_3:12326190-12326209 Msa1093100:intron 35.0%
! TTTTGGTGAATGACAAACCA+TGG + chr7_3:12326243-12326262 Msa1093100:CDS 35.0%
TTTGGTGAATGACAAACCAT+GGG + chr7_3:12326244-12326263 Msa1093100:CDS 35.0%
AAGTACCACATCTAACATCA+CGG - chr7_3:12326328-12326347 None:intergenic 35.0%
ATGTTAGATGTGGTACTTGT+GGG + chr7_3:12326330-12326349 Msa1093100:CDS 35.0%
TTGAATCATTTCGCTGTTGT+TGG + chr7_3:12326544-12326563 Msa1093100:intron 35.0%
CTTGACCAACATATTGCAAA+AGG + chr7_3:12326638-12326657 Msa1093100:CDS 35.0%
!! ACTGGTTTGTTACTGAACTA+TGG + chr7_3:12326809-12326828 Msa1093100:intron 35.0%
AAGGAAGAAGATGAAACAGA+TGG - chr7_3:12327092-12327111 None:intergenic 35.0%
ATCTGTTTCATCTTCTTCCT+TGG + chr7_3:12327091-12327110 Msa1093100:intron 35.0%
GTTACTATGAATTCGTTGGT+AGG + chr7_3:12327118-12327137 Msa1093100:intron 35.0%
! AATTCGTTGGTAGGATCTAT+TGG + chr7_3:12327127-12327146 Msa1093100:intron 35.0%
TAAGACAGGGTAATAAGGAT+GGG - chr7_3:12327227-12327246 None:intergenic 35.0%
CTCATAGCTAATTGGAAACA+AGG + chr7_3:12327452-12327471 Msa1093100:intron 35.0%
GGCTATAGAAACGCTATTAT+AGG - chr7_3:12327581-12327600 None:intergenic 35.0%
TACCAAATCAGAATGCATGA+GGG - chr7_3:12327602-12327621 None:intergenic 35.0%
ATACCAAATCAGAATGCATG+AGG - chr7_3:12327603-12327622 None:intergenic 35.0%
!!! CTAGACCCTTTTTCAAAGAT+TGG - chr7_3:12327764-12327783 None:intergenic 35.0%
AAGGCAGAAAACAAAATGAG+TGG - chr7_3:12327827-12327846 None:intergenic 35.0%
ATTTCCTTTATAAGCCATGC+TGG + chr7_3:12328103-12328122 Msa1093100:intron 35.0%
AAAACCAGCATGGCTTATAA+AGG - chr7_3:12328110-12328129 None:intergenic 35.0%
TTGCCTCCTTTGGTTATAAA+TGG - chr7_3:12328134-12328153 None:intergenic 35.0%
AAATTGTTATAGGGGCCAAA+TGG + chr7_3:12328285-12328304 Msa1093100:intron 35.0%
AATTGTTATAGGGGCCAAAT+GGG + chr7_3:12328286-12328305 Msa1093100:intron 35.0%
!! AATGACCAGAAACTTGCTAA+TGG + chr7_3:12328337-12328356 Msa1093100:CDS 35.0%
!!! TTGTCTTTTTTTGCAGGACT+TGG - chr7_3:12328487-12328506 None:intergenic 35.0%
TGGCTTACAAACTTTACAGA+AGG + chr7_3:12328605-12328624 Msa1093100:CDS 35.0%
TACAAACTTTACAGAAGGTC+AGG + chr7_3:12328610-12328629 Msa1093100:CDS 35.0%
! AAGCTCTGATAATGTGTTCT+AGG + chr7_3:12328640-12328659 Msa1093100:three_prime_UTR 35.0%
GACTTACATAGACGCTTTAT+TGG + chr7_3:12328736-12328755 Msa1093100:three_prime_UTR 35.0%
ATTATGATTGTATACGCTGC+TGG + chr7_3:12328831-12328850 Msa1093100:three_prime_UTR 35.0%
TTATGATTGTATACGCTGCT+GGG + chr7_3:12328832-12328851 Msa1093100:three_prime_UTR 35.0%
ATCAGTCACACAAGACAAAA+TGG - chr7_3:12328862-12328881 None:intergenic 35.0%
!!! GAGAGCGTTGAAAGTGTTTT+TGG - chr7_3:12323751-12323770 None:intergenic 40.0%
TGTAGTAGAGGAAAACGTGA+CGG - chr7_3:12323884-12323903 None:intergenic 40.0%
! AGAGGTGGTTTTTGTAGTAG+AGG - chr7_3:12323896-12323915 None:intergenic 40.0%
GAAAATCAAAACGTCACCGT+CGG - chr7_3:12324139-12324158 None:intergenic 40.0%
!!! CGTTTTGATTTTCCCGGAAA+TGG + chr7_3:12324146-12324165 Msa1093100:CDS 40.0%
TCCCGGAAATGGTTAAATAC+AGG + chr7_3:12324157-12324176 Msa1093100:CDS 40.0%
! ACAAGCCGTCTCAAACATTT+TGG + chr7_3:12324792-12324811 Msa1093100:intron 40.0%
! CAAGCCGTCTCAAACATTTT+GGG + chr7_3:12324793-12324812 Msa1093100:intron 40.0%
ACATTGGAACAAGGCTCAAA+TGG - chr7_3:12324826-12324845 None:intergenic 40.0%
!! TTTGAGCCTTGTTCCAATGT+TGG + chr7_3:12324826-12324845 Msa1093100:intron 40.0%
!! TTGAGCCTTGTTCCAATGTT+GGG + chr7_3:12324827-12324846 Msa1093100:intron 40.0%
AGTTCGCCTAACGGTTAATA+TGG + chr7_3:12324917-12324936 Msa1093100:intron 40.0%
GTTCGCCTAACGGTTAATAT+GGG + chr7_3:12324918-12324937 Msa1093100:intron 40.0%
!! ATATGGGTGTTTTTGCCAAG+AGG + chr7_3:12324934-12324953 Msa1093100:intron 40.0%
TTGGTCTCTTAGGAACAGAT+GGG + chr7_3:12325381-12325400 Msa1093100:intron 40.0%
TAATCATTGTGCAGACCAAC+TGG + chr7_3:12325465-12325484 Msa1093100:intron 40.0%
! TTAAGCCTAGATTAGCCAGT+TGG - chr7_3:12325483-12325502 None:intergenic 40.0%
AGATACAAAAAGATGGAGGG+GGG - chr7_3:12325627-12325646 None:intergenic 40.0%
TTTGTGGGTCAACTTGCAAA+TGG + chr7_3:12325737-12325756 Msa1093100:intron 40.0%
! TGACTGTGCTGTAAAAGTGT+CGG - chr7_3:12325880-12325899 None:intergenic 40.0%
GCATAGACACAAACATGGAA+AGG - chr7_3:12325975-12325994 None:intergenic 40.0%
TGAGATCGAATGGAGTTTCA+AGG + chr7_3:12326032-12326051 Msa1093100:intron 40.0%
! AATGACAAACCATGGGCTAT+TGG + chr7_3:12326251-12326270 Msa1093100:CDS 40.0%
TGTGAACCAGTTAAAACCTC+CGG - chr7_3:12326281-12326300 None:intergenic 40.0%
CATGTCTATGTATGTGCTCA+TGG + chr7_3:12326299-12326318 Msa1093100:CDS 40.0%
GATGTTAGATGTGGTACTTG+TGG + chr7_3:12326329-12326348 Msa1093100:CDS 40.0%
AATGAGGAAATTGAGCTTCG+AGG + chr7_3:12326374-12326393 Msa1093100:CDS 40.0%
AATTGAGCTTCGAGGTATGA+AGG + chr7_3:12326382-12326401 Msa1093100:CDS 40.0%
AATCATATACAGTCCAGGAC+CGG + chr7_3:12326463-12326482 Msa1093100:CDS 40.0%
! CCTCTCCTTTTGCAATATGT+TGG - chr7_3:12326646-12326665 None:intergenic 40.0%
CCAACATATTGCAAAAGGAG+AGG + chr7_3:12326643-12326662 Msa1093100:CDS 40.0%
GAACTATGGTGTAGACTGTT+AGG + chr7_3:12326823-12326842 Msa1093100:intron 40.0%
TCTAATGAGCCTCTCATACT+AGG - chr7_3:12326850-12326869 None:intergenic 40.0%
ATTCTTAGGAGTCTTGGAGT+AGG + chr7_3:12326912-12326931 Msa1093100:intron 40.0%
AAGACAGGGTAATAAGGATG+GGG - chr7_3:12327226-12327245 None:intergenic 40.0%
GTAAGACAGGGTAATAAGGA+TGG - chr7_3:12327228-12327247 None:intergenic 40.0%
AGAGGTAAGACAGGGTAATA+AGG - chr7_3:12327232-12327251 None:intergenic 40.0%
CATAGTTGAGAGGTAAGACA+GGG - chr7_3:12327240-12327259 None:intergenic 40.0%
TCTTACCTCTCAACTATGGA+TGG + chr7_3:12327242-12327261 Msa1093100:intron 40.0%
TCAAACCATCCATAGTTGAG+AGG - chr7_3:12327250-12327269 None:intergenic 40.0%
! AAGGTACTTCTTCCCATAAC+TGG - chr7_3:12327402-12327421 None:intergenic 40.0%
!! TGGGAAGAAGTACCTTAGTT+TGG + chr7_3:12327406-12327425 Msa1093100:intron 40.0%
AGAAGAGAGAAGTTACGGAT+TGG - chr7_3:12327688-12327707 None:intergenic 40.0%
AAGATGAAGGAATACAACGG+TGG - chr7_3:12327909-12327928 None:intergenic 40.0%
ACCGTTGTATTCCTTCATCT+TGG + chr7_3:12327908-12327927 Msa1093100:intron 40.0%
CCCAAGATGAAGGAATACAA+CGG - chr7_3:12327912-12327931 None:intergenic 40.0%
CCGTTGTATTCCTTCATCTT+GGG + chr7_3:12327909-12327928 Msa1093100:intron 40.0%
TGACTAACTGGCATCATAGA+TGG - chr7_3:12328185-12328204 None:intergenic 40.0%
GGTTTCCATTAGCAAGTTTC+TGG - chr7_3:12328345-12328364 None:intergenic 40.0%
GCTAATGGAAACCTTGCTAA+TGG + chr7_3:12328352-12328371 Msa1093100:CDS 40.0%
TTGAAAGTAACAGCTTGAGC+AGG + chr7_3:12328404-12328423 Msa1093100:CDS 40.0%
TGAAAGTAACAGCTTGAGCA+GGG + chr7_3:12328405-12328424 Msa1093100:CDS 40.0%
AAGAAACTCCATTAACACCC+TGG - chr7_3:12328453-12328472 None:intergenic 40.0%
TAAGATCCGGTCTCTATTGA+AGG + chr7_3:12328528-12328547 Msa1093100:CDS 40.0%
! ACGCTTTATTGGTCTGTCAA+AGG + chr7_3:12328747-12328766 Msa1093100:three_prime_UTR 40.0%
GTTGTGATGAAAGCTTATGC+TGG + chr7_3:12328902-12328921 Msa1093100:three_prime_UTR 40.0%
ATGTACACCGAAAAACTCGC+CGG + chr7_3:12323840-12323859 Msa1093100:CDS 45.0%
ACTACAAAAACCACCTCTCC+TGG + chr7_3:12323898-12323917 Msa1093100:CDS 45.0%
!! CTTACGAGCTTTGAACGTGT+CGG - chr7_3:12323973-12323992 None:intergenic 45.0%
!!! CGGTGACGTTTTGATTTTCC+CGG + chr7_3:12324140-12324159 Msa1093100:CDS 45.0%
AGCGCCCAAAATGTTTGAGA+CGG - chr7_3:12324800-12324819 None:intergenic 45.0%
CATCTGTTCCTAAGAGACCA+AGG - chr7_3:12325382-12325401 None:intergenic 45.0%
CTTGGTCTCTTAGGAACAGA+TGG + chr7_3:12325380-12325399 Msa1093100:intron 45.0%
GTTCAACAATGTTCCCTCTC+AGG + chr7_3:12325519-12325538 Msa1093100:intron 45.0%
!!! AGGTTCTGCTAGTTTTGCTG+AGG + chr7_3:12325586-12325605 Msa1093100:intron 45.0%
!!! GGTTCTGCTAGTTTTGCTGA+GGG + chr7_3:12325587-12325606 Msa1093100:intron 45.0%
!!! GCTAGTTTTGCTGAGGGTTT+TGG + chr7_3:12325593-12325612 Msa1093100:intron 45.0%
AAAGGGAAAAGTAGCCAGAG+AGG - chr7_3:12325689-12325708 None:intergenic 45.0%
TTTGGTCTATGTGCCAGTGT+TGG + chr7_3:12325939-12325958 Msa1093100:intron 45.0%
!! TGACCCATTGTTTTTCCGTC+CGG - chr7_3:12326485-12326504 None:intergenic 45.0%
ACGGAAAAACAATGGGTCAC+TGG + chr7_3:12326486-12326505 Msa1093100:CDS 45.0%
GAGAGGTTATACAGCGACTT+TGG + chr7_3:12326660-12326679 Msa1093100:CDS 45.0%
AGGTTATACAGCGACTTTGG+AGG + chr7_3:12326663-12326682 Msa1093100:CDS 45.0%
! TATACAGCGACTTTGGAGGT+TGG + chr7_3:12326667-12326686 Msa1093100:intron 45.0%
CTGTTAGGACCTAGTATGAG+AGG + chr7_3:12326838-12326857 Msa1093100:intron 45.0%
AGGGGAATTCTTAGGAGTCT+TGG + chr7_3:12326906-12326925 Msa1093100:intron 45.0%
TTAGGAGTCTTGGAGTAGGA+CGG + chr7_3:12326916-12326935 Msa1093100:intron 45.0%
!! TTTCTCTTTAGGGCCAGAGT+AGG + chr7_3:12326946-12326965 Msa1093100:intron 45.0%
GATTCCTCTCTGAGCTATGT+CGG + chr7_3:12326968-12326987 Msa1093100:intron 45.0%
CCATAGTTGAGAGGTAAGAC+AGG - chr7_3:12327241-12327260 None:intergenic 45.0%
CCTGTCTTACCTCTCAACTA+TGG + chr7_3:12327238-12327257 Msa1093100:intron 45.0%
AGCCCTCATGCATTCTGATT+TGG + chr7_3:12327597-12327616 Msa1093100:intron 45.0%
TGCTAAGTAGTTGCCTCCTT+TGG - chr7_3:12328144-12328163 None:intergenic 45.0%
TCATTTGCTCCCTTCACTTC+TGG - chr7_3:12328322-12328341 None:intergenic 45.0%
TGGCATGATCTCCATTAGCA+AGG - chr7_3:12328366-12328385 None:intergenic 45.0%
AGCAGGGAAGAAAATGTGAC+CGG + chr7_3:12328421-12328440 Msa1093100:CDS 45.0%
ATTAACACCCTGGCAACAAC+CGG - chr7_3:12328443-12328462 None:intergenic 45.0%
AGGGCAAAAGCTGTAAGATC+CGG + chr7_3:12328515-12328534 Msa1093100:CDS 45.0%
!!! TTTTTTTTTTTTTAAACAAA+GGG - chr7_3:12325706-12325725 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTAAACAA+AGG - chr7_3:12325707-12325726 None:intergenic 5.0%
CATTTCAGGGCGAGTGAAAC+CGG - chr7_3:12323823-12323842 None:intergenic 50.0%
TTTGGGAAGAGGATGGTCGT+CGG - chr7_3:12323943-12323962 None:intergenic 50.0%
CACTGTGTGTGAAGCAAGTG+AGG + chr7_3:12324101-12324120 Msa1093100:CDS 50.0%
TGTGAAGCAAGTGAGGAAGC+TGG + chr7_3:12324108-12324127 Msa1093100:CDS 50.0%
GATGGCCCAACATTGGAACA+AGG - chr7_3:12324835-12324854 None:intergenic 50.0%
GCAGACCAACTGGCTAATCT+AGG + chr7_3:12325475-12325494 Msa1093100:intron 50.0%
! ACCATGGGCTATTGGAGTAC+CGG + chr7_3:12326259-12326278 Msa1093100:CDS 50.0%
!!! GGAGTACCGGAGGTTTTAAC+TGG + chr7_3:12326272-12326291 Msa1093100:CDS 50.0%
GGAAGCCGTGATGTTAGATG+TGG + chr7_3:12326320-12326339 Msa1093100:CDS 50.0%
TGTTACTGCCTGTTCTCACC+TGG + chr7_3:12326415-12326434 Msa1093100:CDS 50.0%
GTTACTGCCTGTTCTCACCT+GGG + chr7_3:12326416-12326435 Msa1093100:CDS 50.0%
TGGGTGGGCACAAATATGCT+GGG + chr7_3:12326435-12326454 Msa1093100:CDS 50.0%
ATATACAGTCCAGGACCGGA+CGG + chr7_3:12326467-12326486 Msa1093100:CDS 50.0%
!! ATTGTTTTTCCGTCCGGTCC+TGG - chr7_3:12326479-12326498 None:intergenic 50.0%
AGGACCGGACGGAAAAACAA+TGG + chr7_3:12326478-12326497 Msa1093100:CDS 50.0%
GGACCGGACGGAAAAACAAT+GGG + chr7_3:12326479-12326498 Msa1093100:CDS 50.0%
CTCAGAGAGGAATCCTACTC+TGG - chr7_3:12326962-12326981 None:intergenic 50.0%
CTATGTCGGAGCTTTGCTCT+GGG + chr7_3:12326982-12327001 Msa1093100:intron 50.0%
ATCACAGCAGCCCAAGATGA+AGG - chr7_3:12327922-12327941 None:intergenic 50.0%
ACCGTCTGTTCCAGAAGTGA+AGG + chr7_3:12328309-12328328 Msa1093100:CDS 50.0%
!! CCCTTCACTTCTGGAACAGA+CGG - chr7_3:12328313-12328332 None:intergenic 50.0%
CCGTCTGTTCCAGAAGTGAA+GGG + chr7_3:12328310-12328329 Msa1093100:CDS 50.0%
AAATGTGACCGGTTGTTGCC+AGG + chr7_3:12328432-12328451 Msa1093100:CDS 50.0%
AATGTGACCGGTTGTTGCCA+GGG + chr7_3:12328433-12328452 Msa1093100:CDS 50.0%
! GGTTGTTGCCAGGGTGTTAA+TGG + chr7_3:12328442-12328461 Msa1093100:CDS 50.0%
CACGCTCCTTCAATAGAGAC+CGG - chr7_3:12328537-12328556 None:intergenic 50.0%
CGTGAAATTCTCACAGCCGT+TGG + chr7_3:12328553-12328572 Msa1093100:CDS 50.0%
!! GGTGTCGGTGGAAGAGGTAT+CGG - chr7_3:12323802-12323821 None:intergenic 55.0%
GATACCTCTTCCACCGACAC+CGG + chr7_3:12323801-12323820 Msa1093100:CDS 55.0%
GAGGAAAACGTGACGGTCGT+AGG - chr7_3:12323877-12323896 None:intergenic 55.0%
CGACGAGTTTGGGAAGAGGA+TGG - chr7_3:12323950-12323969 None:intergenic 55.0%
! AACGTGTCGGCGACGAGTTT+GGG - chr7_3:12323960-12323979 None:intergenic 55.0%
GAGGAAGCTGGATTCTCCGA+CGG + chr7_3:12324120-12324139 Msa1093100:CDS 55.0%
AGGGCACACACTACCAACAC+TGG - chr7_3:12325955-12325974 None:intergenic 55.0%
TCCGGTACTCCAATAGCCCA+TGG - chr7_3:12326263-12326282 None:intergenic 55.0%
!! ATGGGCTATTGGAGTACCGG+AGG + chr7_3:12326262-12326281 Msa1093100:CDS 55.0%
CAGCATATTTGTGCCCACCC+AGG - chr7_3:12326436-12326455 None:intergenic 55.0%
CTGGGTGGGCACAAATATGC+TGG + chr7_3:12326434-12326453 Msa1093100:CDS 55.0%
AGCTCCGACATAGCTCAGAG+AGG - chr7_3:12326975-12326994 None:intergenic 55.0%
GCTATGTCGGAGCTTTGCTC+TGG + chr7_3:12326981-12327000 Msa1093100:intron 55.0%
CTGGAACAGACGGTCCCATT+TGG - chr7_3:12328303-12328322 None:intergenic 55.0%
CACAGCTCCAAGCACACCAA+CGG - chr7_3:12328572-12328591 None:intergenic 55.0%
!! GAAACCGGTGTCGGTGGAAG+AGG - chr7_3:12323808-12323827 None:intergenic 60.0%
AGGGCGAGTGAAACCGGTGT+CGG - chr7_3:12323817-12323836 None:intergenic 60.0%
!!! GACGGTGCCGGCGAGTTTTT+CGG - chr7_3:12323850-12323869 None:intergenic 60.0%
TCGGCGACGAGTTTGGGAAG+AGG - chr7_3:12323954-12323973 None:intergenic 60.0%
! GAACGTGTCGGCGACGAGTT+TGG - chr7_3:12323961-12323980 None:intergenic 60.0%
ACTGCCTGTTCTCACCTGGG+TGG + chr7_3:12326419-12326438 Msa1093100:CDS 60.0%
CTGCCTGTTCTCACCTGGGT+GGG + chr7_3:12326420-12326439 Msa1093100:CDS 60.0%
CTCACAGCCGTTGGTGTGCT+TGG + chr7_3:12328562-12328581 Msa1093100:CDS 60.0%
CGTTGGTGTGCTTGGAGCTG+TGG + chr7_3:12328570-12328589 Msa1093100:CDS 60.0%
TGGTGTGCTTGGAGCTGTGG+CGG + chr7_3:12328573-12328592 Msa1093100:CDS 60.0%
! GCGAGTGAAACCGGTGTCGG+TGG - chr7_3:12323814-12323833 None:intergenic 65.0%
!! GTGACGGTCGTAGGCGTCGA+CGG - chr7_3:12323868-12323887 None:intergenic 65.0%
TCGGAAGCTTCGACGCGTGG+TGG - chr7_3:12323924-12323943 None:intergenic 65.0%
TCGTCGGAAGCTTCGACGCG+TGG - chr7_3:12323927-12323946 None:intergenic 65.0%
TCCTGGGGTGGTAGCCTCTC+TGG + chr7_3:12325672-12325691 Msa1093100:intron 65.0%
GTGCCCACCCAGGTGAGAAC+AGG - chr7_3:12326426-12326445 None:intergenic 65.0%
AGCTGTGGCGGCTGTTGCTG+TGG + chr7_3:12328585-12328604 Msa1093100:CDS 65.0%
!! GTCGTAGGCGTCGACGGTGC+CGG - chr7_3:12323862-12323881 None:intergenic 70.0%
AGCTTCGACGCGTGGTGGCC+AGG - chr7_3:12323919-12323938 None:intergenic 70.0%
GCCAGAGAGGCTACCACCCC+AGG - chr7_3:12325676-12325695 None:intergenic 70.0%
CGCGTGGTGGCCAGGAGAGG+TGG - chr7_3:12323911-12323930 None:intergenic 75.0%
CGACGCGTGGTGGCCAGGAG+AGG - chr7_3:12323914-12323933 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 12323709 12328954 12323709 ID=Msa1093100;Name=Msa1093100
chr7_3 mRNA 12323709 12328954 12323709 ID=Msa1093100-mRNA-1;Parent=Msa1093100;Name=Msa1093100-mRNA-1;_AED=0.07;_eAED=0.07;_QI=63|1|1|1|0.8|0.66|6|318|344
chr7_3 exon 12323709 12323743 12323709 ID=Msa1093100-mRNA-1:exon:2932;Parent=Msa1093100-mRNA-1
chr7_3 exon 12323764 12324010 12323764 ID=Msa1093100-mRNA-1:exon:2933;Parent=Msa1093100-mRNA-1
chr7_3 exon 12324093 12324178 12324093 ID=Msa1093100-mRNA-1:exon:2934;Parent=Msa1093100-mRNA-1
chr7_3 exon 12326202 12326507 12326202 ID=Msa1093100-mRNA-1:exon:2935;Parent=Msa1093100-mRNA-1
chr7_3 exon 12326601 12326684 12326601 ID=Msa1093100-mRNA-1:exon:2936;Parent=Msa1093100-mRNA-1
chr7_3 exon 12328297 12328954 12328297 ID=Msa1093100-mRNA-1:exon:2937;Parent=Msa1093100-mRNA-1
chr7_3 five_prime_UTR 12323709 12323743 12323709 ID=Msa1093100-mRNA-1:five_prime_utr;Parent=Msa1093100-mRNA-1
chr7_3 five_prime_UTR 12323764 12323791 12323764 ID=Msa1093100-mRNA-1:five_prime_utr;Parent=Msa1093100-mRNA-1
chr7_3 CDS 12323792 12324010 12323792 ID=Msa1093100-mRNA-1:cds;Parent=Msa1093100-mRNA-1
chr7_3 CDS 12324093 12324178 12324093 ID=Msa1093100-mRNA-1:cds;Parent=Msa1093100-mRNA-1
chr7_3 CDS 12326202 12326507 12326202 ID=Msa1093100-mRNA-1:cds;Parent=Msa1093100-mRNA-1
chr7_3 CDS 12326601 12326684 12326601 ID=Msa1093100-mRNA-1:cds;Parent=Msa1093100-mRNA-1
chr7_3 CDS 12328297 12328636 12328297 ID=Msa1093100-mRNA-1:cds;Parent=Msa1093100-mRNA-1
chr7_3 three_prime_UTR 12328637 12328954 12328637 ID=Msa1093100-mRNA-1:three_prime_utr;Parent=Msa1093100-mRNA-1
Gene Sequence

>Msa1093100

ATGGCGTCCGATACCTCTTCCACCGACACCGGTTTCACTCGCCCTGAAATGTACACCGAAAAACTCGCCGGCACCGTCGACGCCTACGACCGTCACGTTTTCCTCTACTACAAAAACCACCTCTCCTGGCCACCACGCGTCGAAGCTTCCGACGACCATCCTCTTCCCAAACTCGTCGCCGACACGTTCAAAGCTCGTAAGAACGATTTAGCTCTCAAGACTAAAATCACTGTGTGTGAAGCAAGTGAGGAAGCTGGATTCTCCGACGGTGACGTTTTGATTTTCCCGGAAATGGTTAAATACAGGGGTTTGGTGGAGTCAAATGTTGAGAGCTTTTTTGAAGATGTTTTGGTGAATGACAAACCATGGGCTATTGGAGTACCGGAGGTTTTAACTGGTTCACATGTCTATGTATGTGCTCATGGAAGCCGTGATGTTAGATGTGGTACTTGTGGGCCAGTTCTCATCAATAATTTTAATGAGGAAATTGAGCTTCGAGGTATGAAGGATCAGATATCTGTTACTGCCTGTTCTCACCTGGGTGGGCACAAATATGCTGGGAATATAATCATATACAGTCCAGGACCGGACGGAAAAACAATGGGTCACTGGTACGGCTATGTTACTCCTAATGATATTCCTGATTTACTTGACCAACATATTGCAAAAGGAGAGGTTATACAGCGACTTTGGAGGGGCCAAATGGGACCGTCTGTTCCAGAAGTGAAGGGAGCAAATGACCAGAAACTTGCTAATGGAAACCTTGCTAATGGAGATCATGCCAATAAGATCGAGAAGAATATTGAAAGTAACAGCTTGAGCAGGGAAGAAAATGTGACCGGTTGTTGCCAGGGTGTTAATGGAGTTTCTTGTTGCAGTTTTCCAAGTCCTGCAAAAAAAGACAAGATTAAAGAGGGCAAAAGCTGTAAGATCCGGTCTCTATTGAAGGAGCGTGAAATTCTCACAGCCGTTGGTGTGCTTGGAGCTGTGGCGGCTGTTGCTGTGGCTTACAAACTTTACAGAAGGTCAGGCTGA

Protein sequence

>Msa1093100

MASDTSSTDTGFTRPEMYTEKLAGTVDAYDRHVFLYYKNHLSWPPRVEASDDHPLPKLVADTFKARKNDLALKTKITVCEASEEAGFSDGDVLIFPEMVKYRGLVESNVESFFEDVLVNDKPWAIGVPEVLTGSHVYVCAHGSRDVRCGTCGPVLINNFNEEIELRGMKDQISVTACSHLGGHKYAGNIIIYSPGPDGKTMGHWYGYVTPNDIPDLLDQHIAKGEVIQRLWRGQMGPSVPEVKGANDQKLANGNLANGDHANKIEKNIESNSLSREENVTGCCQGVNGVSCCSFPSPAKKDKIKEGKSCKIRSLLKEREILTAVGVLGAVAAVAVAYKLYRRSG*