Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776030 | AES98664.2 | 73.958 | 96 | 25 | 0 | 36 | 131 | 943 | 1038 | 1.80e-40 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776030 | G7JZJ5 | 73.958 | 96 | 25 | 0 | 36 | 131 | 943 | 1038 | 8.61e-41 | 155 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055590 | Msa0776030 | 0.802804 | 4.715091e-49 | -8.615850e-47 |
| Msa0088550 | Msa0776030 | 0.800253 | 1.571611e-48 | -8.615850e-47 |
| Msa0106370 | Msa0776030 | -0.824074 | 9.830558e-54 | -8.615850e-47 |
| Msa0607540 | Msa0776030 | 0.817212 | 3.707210e-52 | -8.615850e-47 |
| Msa0610890 | Msa0776030 | 0.802240 | 6.163228e-49 | -8.615850e-47 |
| Msa0635470 | Msa0776030 | 0.817652 | 2.950529e-52 | -8.615850e-47 |
| Msa0641020 | Msa0776030 | 0.821450 | 4.011736e-53 | -8.615850e-47 |
| Msa0653510 | Msa0776030 | 0.808023 | 3.796069e-50 | -8.615850e-47 |
| Msa0658570 | Msa0776030 | 0.853666 | 2.054391e-61 | -8.615850e-47 |
| Msa0664160 | Msa0776030 | 0.833282 | 5.834112e-56 | -8.615850e-47 |
| Msa0667890 | Msa0776030 | 0.812880 | 3.393874e-51 | -8.615850e-47 |
| Msa0690440 | Msa0776030 | 0.804193 | 2.429449e-49 | -8.615850e-47 |
| Msa0703490 | Msa0776030 | 0.857527 | 1.536465e-62 | -8.615850e-47 |
| Msa0715720 | Msa0776030 | 0.818761 | 1.656057e-52 | -8.615850e-47 |
| Msa0719490 | Msa0776030 | -0.808267 | 3.368640e-50 | -8.615850e-47 |
| Msa0722930 | Msa0776030 | 0.828859 | 7.112396e-55 | -8.615850e-47 |
| Msa0723140 | Msa0776030 | 0.830761 | 2.448264e-55 | -8.615850e-47 |
| Msa0725220 | Msa0776030 | 0.802730 | 4.883153e-49 | -8.615850e-47 |
| Msa0734340 | Msa0776030 | 0.814751 | 1.313510e-51 | -8.615850e-47 |
| Msa0734510 | Msa0776030 | 0.831424 | 1.682509e-55 | -8.615850e-47 |
| Msa0776030 | Msa0801100 | 0.805810 | 1.115156e-49 | -8.615850e-47 |
| Msa0776030 | Msa0801710 | 0.823646 | 1.238248e-53 | -8.615850e-47 |
| Msa0776030 | Msa0813420 | 0.834767 | 2.476874e-56 | -8.615850e-47 |
| Msa0776030 | Msa0843280 | 0.811307 | 7.475036e-51 | -8.615850e-47 |
| Msa0776030 | Msa0876850 | -0.801980 | 6.968955e-49 | -8.615850e-47 |
| Msa0776030 | Msa0886330 | -0.800085 | 1.700642e-48 | -8.615850e-47 |
| Msa0776030 | Msa0891040 | 0.801085 | 1.063514e-48 | -8.615850e-47 |
| Msa0776030 | Msa0902980 | 0.823838 | 1.116614e-53 | -8.615850e-47 |
| Msa0776030 | Msa0912210 | 0.806708 | 7.215857e-50 | -8.615850e-47 |
| Msa0776030 | Msa0942080 | -0.807366 | 5.234669e-50 | -8.615850e-47 |
| Msa0776030 | Msa0946120 | 0.821197 | 4.588202e-53 | -8.615850e-47 |
| Msa0776030 | Msa0951720 | 0.824110 | 9.639730e-54 | -8.615850e-47 |
| Msa0776030 | Msa0998890 | -0.811072 | 8.406940e-51 | -8.615850e-47 |
| Msa0776030 | Msa1000020 | 0.816237 | 6.134260e-52 | -8.615850e-47 |
| Msa0776030 | Msa1001200 | 0.828282 | 9.802828e-55 | -8.615850e-47 |
| Msa0776030 | Msa1008490 | 0.820291 | 7.413173e-53 | -8.615850e-47 |
| Msa0776030 | Msa1036390 | 0.811558 | 6.594180e-51 | -8.615850e-47 |
| Msa0776030 | Msa1040120 | 0.801174 | 1.019927e-48 | -8.615850e-47 |
| Msa0776030 | Msa1041730 | 0.823378 | 1.430713e-53 | -8.615850e-47 |
| Msa0776030 | Msa1044090 | 0.802676 | 5.010764e-49 | -8.615850e-47 |
| Msa0776030 | Msa1049950 | 0.803422 | 3.511899e-49 | -8.615850e-47 |
| Msa0776030 | Msa1068200 | -0.812833 | 3.474657e-51 | -8.615850e-47 |
| Msa0776030 | Msa1075220 | -0.825627 | 4.229300e-54 | -8.615850e-47 |
| Msa0776030 | Msa1076680 | 0.816377 | 5.707010e-52 | -8.615850e-47 |
| Msa0776030 | Msa1080160 | 0.804763 | 1.847892e-49 | -8.615850e-47 |
| Msa0776030 | Msa1083410 | 0.847405 | 1.180729e-59 | -8.615850e-47 |
| Msa0776030 | Msa1089040 | 0.820565 | 6.414461e-53 | -8.615850e-47 |
| Msa0776030 | Msa1098560 | 0.827084 | 1.901349e-54 | -8.615850e-47 |
| Msa0776030 | Msa1116130 | -0.822249 | 2.620207e-53 | -8.615850e-47 |
| Msa0776030 | Msa1125080 | 0.805299 | 1.427545e-49 | -8.615850e-47 |
| Msa0776030 | Msa1128160 | 0.848491 | 5.924138e-60 | -8.615850e-47 |
| Msa0776030 | Msa1139000 | -0.833441 | 5.322309e-56 | -8.615850e-47 |
| Msa0776030 | Msa1139240 | 0.819487 | 1.132007e-52 | -8.615850e-47 |
| Msa0776030 | Msa1162550 | -0.815218 | 1.034452e-51 | -8.615850e-47 |
| Msa0776030 | Msa1165360 | 0.849295 | 3.544437e-60 | -8.615850e-47 |
| Msa0776030 | Msa1167220 | 0.838559 | 2.676726e-57 | -8.615850e-47 |
| Msa0776030 | Msa1184530 | 0.841301 | 5.164104e-58 | -8.615850e-47 |
| Msa0776030 | Msa1184550 | 0.801129 | 1.041663e-48 | -8.615850e-47 |
| Msa0776030 | Msa1195750 | 0.808394 | 3.165020e-50 | -8.615850e-47 |
| Msa0776030 | Msa1205130 | 0.806107 | 9.658716e-50 | -8.615850e-47 |
| Msa0776030 | Msa1208340 | 0.807470 | 4.977356e-50 | -8.615850e-47 |
| Msa0776030 | Msa1209560 | 0.841165 | 5.606879e-58 | -8.615850e-47 |
| Msa0776030 | Msa1212840 | 0.838430 | 2.888801e-57 | -8.615850e-47 |
| Msa0776030 | Msa1220710 | 0.801251 | 9.835621e-49 | -8.615850e-47 |
| Msa0776030 | Msa1228210 | 0.823107 | 1.655106e-53 | -8.615850e-47 |
| Msa0776030 | Msa1246040 | 0.855885 | 4.673107e-62 | -8.615850e-47 |
| Msa0776030 | Msa1267060 | 0.803004 | 4.286638e-49 | -8.615850e-47 |
| Msa0776030 | Msa1271280 | 0.830172 | 3.410541e-55 | -8.615850e-47 |
| Msa0776030 | Msa1271300 | 0.828577 | 8.321235e-55 | -8.615850e-47 |
| Msa0776030 | Msa1278840 | 0.811039 | 8.545427e-51 | -8.615850e-47 |
| Msa0776030 | Msa1298910 | 0.825407 | 4.766081e-54 | -8.615850e-47 |
| Msa0776030 | Msa1303640 | 0.802737 | 4.866905e-49 | -8.615850e-47 |
| Msa0776030 | Msa1318240 | 0.811843 | 5.715773e-51 | -8.615850e-47 |
| Msa0776030 | Msa1322890 | 0.809327 | 1.998830e-50 | -8.615850e-47 |
| Msa0776030 | Msa1330530 | 0.828039 | 1.121730e-54 | -8.615850e-47 |
| Msa0776030 | Msa1350840 | 0.884063 | 2.640489e-71 | -8.615850e-47 |
| Msa0776030 | Msa1357530 | 0.802504 | 5.436645e-49 | -8.615850e-47 |
| Msa0776030 | Msa1365040 | -0.823459 | 1.369505e-53 | -8.615850e-47 |
| Msa0776030 | Msa1376890 | 0.852525 | 4.360748e-61 | -8.615850e-47 |
| Msa0776030 | Msa1393410 | 0.804495 | 2.102109e-49 | -8.615850e-47 |
| Msa0776030 | Msa1401530 | 0.815907 | 7.266409e-52 | -8.615850e-47 |
| Msa0776030 | Msa1435420 | 0.801724 | 7.865929e-49 | -8.615850e-47 |
| Msa0776030 | Msa1438270 | 0.821351 | 4.229281e-53 | -8.615850e-47 |
| Msa0776030 | Msa1445250 | 0.812911 | 3.339826e-51 | -8.615850e-47 |
| Msa0776030 | Msa1454860 | 0.802776 | 4.777612e-49 | -8.615850e-47 |
| Msa0776030 | Msa1457670 | -0.831670 | 1.463382e-55 | -8.615850e-47 |
| Msa0776030 | Msa1466810 | 0.816975 | 4.190194e-52 | -8.615850e-47 |
| Msa0195770 | Msa0776030 | 0.803497 | 3.388766e-49 | -8.615850e-47 |
| Msa0201330 | Msa0776030 | 0.812525 | 4.057979e-51 | -8.615850e-47 |
| Msa0204210 | Msa0776030 | 0.825701 | 4.060577e-54 | -8.615850e-47 |
| Msa0217400 | Msa0776030 | 0.809300 | 2.025657e-50 | -8.615850e-47 |
| Msa0227800 | Msa0776030 | 0.800931 | 1.143224e-48 | -8.615850e-47 |
| Msa0370480 | Msa0776030 | 0.811566 | 6.566738e-51 | -8.615850e-47 |
| Msa0373930 | Msa0776030 | 0.809384 | 1.943366e-50 | -8.615850e-47 |
| Msa0376590 | Msa0776030 | 0.803711 | 3.060053e-49 | -8.615850e-47 |
| Msa0426820 | Msa0776030 | -0.809696 | 1.665241e-50 | -8.615850e-47 |
| Msa0429770 | Msa0776030 | 0.804062 | 2.586342e-49 | -8.615850e-47 |
| Msa0438050 | Msa0776030 | 0.802589 | 5.221591e-49 | -8.615850e-47 |
| Msa0440040 | Msa0776030 | 0.842803 | 2.068063e-58 | -8.615850e-47 |
| Msa0443290 | Msa0776030 | 0.827642 | 1.397910e-54 | -8.615850e-47 |
| Msa0448550 | Msa0776030 | -0.812012 | 5.251862e-51 | -8.615850e-47 |
| Msa0457370 | Msa0776030 | 0.817340 | 3.468968e-52 | -8.615850e-47 |
| Msa0465680 | Msa0776030 | -0.801162 | 1.025387e-48 | -8.615850e-47 |
| Msa0467740 | Msa0776030 | -0.826178 | 3.128017e-54 | -8.615850e-47 |
| Msa0243930 | Msa0776030 | 0.815753 | 7.864481e-52 | -8.615850e-47 |
| Msa0261260 | Msa0776030 | 0.805402 | 1.358432e-49 | -8.615850e-47 |
| Msa0265380 | Msa0776030 | 0.803434 | 3.492160e-49 | -8.615850e-47 |
| Msa0266000 | Msa0776030 | -0.825330 | 4.971789e-54 | -8.615850e-47 |
| Msa0282590 | Msa0776030 | 0.812226 | 4.716352e-51 | -8.615850e-47 |
| Msa0299200 | Msa0776030 | 0.812054 | 5.142098e-51 | -8.615850e-47 |
| Msa0304740 | Msa0776030 | 0.820953 | 5.222492e-53 | -8.615850e-47 |
| Msa0304990 | Msa0776030 | 0.819940 | 8.919022e-53 | -8.615850e-47 |
| Msa0307510 | Msa0776030 | 0.820696 | 5.985119e-53 | -8.615850e-47 |
| Msa0313990 | Msa0776030 | 0.800903 | 1.158317e-48 | -8.615850e-47 |
| Msa0330670 | Msa0776030 | 0.810333 | 1.214559e-50 | -8.615850e-47 |
| Msa0331590 | Msa0776030 | 0.823855 | 1.106329e-53 | -8.615850e-47 |
| Msa0331920 | Msa0776030 | 0.851464 | 8.728464e-61 | -8.615850e-47 |
| Msa0333720 | Msa0776030 | -0.812559 | 3.988930e-51 | -8.615850e-47 |
| Msa0482870 | Msa0776030 | 0.810523 | 1.105216e-50 | -8.615850e-47 |
| Msa0490870 | Msa0776030 | 0.840747 | 7.217570e-58 | -8.615850e-47 |
| Msa0492670 | Msa0776030 | 0.806323 | 8.699316e-50 | -8.615850e-47 |
| Msa0492740 | Msa0776030 | 0.841040 | 6.047632e-58 | -8.615850e-47 |
| Msa0492870 | Msa0776030 | 0.801535 | 8.602151e-49 | -8.615850e-47 |
| Msa0492880 | Msa0776030 | 0.838455 | 2.847313e-57 | -8.615850e-47 |
| Msa0498220 | Msa0776030 | 0.820807 | 5.642222e-53 | -8.615850e-47 |
| Msa0500970 | Msa0776030 | 0.810814 | 9.558919e-51 | -8.615850e-47 |
| Msa0514130 | Msa0776030 | -0.827662 | 1.382419e-54 | -8.615850e-47 |
| Msa0528970 | Msa0776030 | 0.801256 | 9.811621e-49 | -8.615850e-47 |
| Msa0536220 | Msa0776030 | 0.810237 | 1.273579e-50 | -8.615850e-47 |
| Msa0547960 | Msa0776030 | 0.819070 | 1.408747e-52 | -8.615850e-47 |
| Msa0553460 | Msa0776030 | 0.807037 | 6.146617e-50 | -8.615850e-47 |
| Msa0567020 | Msa0776030 | 0.845153 | 4.851511e-59 | -8.615850e-47 |
| Msa0576200 | Msa0776030 | 0.810380 | 1.186250e-50 | -8.615850e-47 |
| Msa0586430 | Msa0776030 | 0.821489 | 3.930353e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776030 | MtrunA17_Chr1g0146881 | 52.800 | 125 | 32 | 2 | 34 | 131 | 51 | 175 | 1.08e-32 | 119 |
| Msa0776030 | MtrunA17_Chr5g0430961 | 68.182 | 66 | 15 | 1 | 74 | 139 | 19 | 78 | 5.12e-25 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0776030 | AT5G53050.4 | 45.455 | 121 | 36 | 3 | 39 | 132 | 47 | 164 | 4.91e-17 | 76.6 |
| Msa0776030 | AT5G53050.1 | 43.802 | 121 | 38 | 3 | 39 | 132 | 47 | 164 | 9.20e-17 | 75.1 |
| Msa0776030 | AT5G53050.6 | 43.802 | 121 | 38 | 3 | 39 | 132 | 47 | 164 | 9.50e-17 | 75.1 |
| Msa0776030 | AT5G53050.2 | 45.455 | 121 | 36 | 3 | 39 | 132 | 47 | 164 | 1.03e-16 | 75.5 |
| Msa0776030 | AT5G53050.3 | 45.455 | 121 | 36 | 3 | 39 | 132 | 47 | 164 | 1.03e-16 | 75.5 |
| Msa0776030 | AT5G53050.5 | 45.455 | 121 | 36 | 3 | 39 | 132 | 47 | 164 | 1.07e-16 | 75.5 |
Find 109 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTACTCTGGTGCTCTTTC+TGG | 0.065981 | 5_2:-53337868 | None:intergenic |
| TCATTCCAATAAACAAATTT+TGG | 0.112658 | 5_2:-53339779 | None:intergenic |
| TGAAGCATCCTCTTGCTTTC+AGG | 0.176242 | 5_2:-53339458 | None:intergenic |
| GGTTTCCAAAATTTGTTTAT+TGG | 0.188832 | 5_2:+53339774 | Msa0776030:three_prime_UTR |
| GTACTAATGTTGCTGAAATA+AGG | 0.197501 | 5_2:+53340748 | Msa0776030:three_prime_UTR |
| CGACGTTGTTAAACAATATT+AGG | 0.200638 | 5_2:+53340161 | Msa0776030:three_prime_UTR |
| GGTAAAATTATTGTGAGAAT+TGG | 0.244178 | 5_2:+53339193 | Msa0776030:three_prime_UTR |
| CCATTGTTCACTGCCTTCTT+TGG | 0.244312 | 5_2:-53340613 | None:intergenic |
| ATGCAACAAATCAAAATTCT+TGG | 0.251790 | 5_2:+53339249 | Msa0776030:three_prime_UTR |
| ACTTATTTCTCTTTGAACTA+TGG | 0.254865 | 5_2:+53339654 | Msa0776030:three_prime_UTR |
| TTAATCAAATTATTGCCTTA+TGG | 0.257888 | 5_2:+53340917 | Msa0776030:three_prime_UTR |
| TTTAACAACGTCGCCAATTC+TGG | 0.259391 | 5_2:-53340151 | None:intergenic |
| TGATAGCTCTTTGCTGGTTA+TGG | 0.265278 | 5_2:+53340222 | Msa0776030:three_prime_UTR |
| GTTGAGAATTTATCTTTCTA+TGG | 0.265472 | 5_2:+53338908 | Msa0776030:three_prime_UTR |
| ACGGACATTTGTTCTAATTC+TGG | 0.268719 | 5_2:+53337923 | Msa0776030:CDS |
| AAATATGTATTGACATTGTT+TGG | 0.280324 | 5_2:-53340858 | None:intergenic |
| AGCAAAGAGCTATCAGTTAA+AGG | 0.286182 | 5_2:-53340214 | None:intergenic |
| TAACGATAATCTGACAAATT+AGG | 0.302854 | 5_2:-53339878 | None:intergenic |
| ATGATGAAGACGGCTTCTTT+TGG | 0.314207 | 5_2:+53338120 | Msa0776030:CDS |
| TTTAACTGATAGCTCTTTGC+TGG | 0.325159 | 5_2:+53340216 | Msa0776030:three_prime_UTR |
| TATTTCTCAAGACAGTTATC+TGG | 0.325305 | 5_2:+53339049 | Msa0776030:three_prime_UTR |
| CGTTGATGTTGGTATTGATA+TGG | 0.339498 | 5_2:+53339916 | Msa0776030:three_prime_UTR |
| ATTTAAATTAGAAAGTAATA+TGG | 0.345321 | 5_2:-53339118 | None:intergenic |
| CGACAAACAACGGGATTAAC+CGG | 0.350175 | 5_2:+53338083 | Msa0776030:CDS |
| GCCAAGGAGTGAACTCTATC+AGG | 0.356417 | 5_2:-53338656 | None:intergenic |
| GCTGGTTATGGTTAATTTCA+AGG | 0.358981 | 5_2:+53340234 | Msa0776030:three_prime_UTR |
| CGTACTCTGGTGCTCTTTCT+GGG | 0.365980 | 5_2:-53337867 | None:intergenic |
| CAGCTTCAATTCTAAAGATA+TGG | 0.371605 | 5_2:-53339217 | None:intergenic |
| TTAACTACATTAATGATTGC+TGG | 0.380466 | 5_2:+53338812 | Msa0776030:three_prime_UTR |
| AAGAAGCCGTCTTCATCATT+AGG | 0.383282 | 5_2:-53338116 | None:intergenic |
| TTTGTGTCGGACAATGTTAA+TGG | 0.398856 | 5_2:+53339412 | Msa0776030:three_prime_UTR |
| CTCAACTAAATTTGTCCTAA+AGG | 0.400976 | 5_2:-53338891 | None:intergenic |
| GAATTGAATGGTTAGGACTT+AGG | 0.405260 | 5_2:+53338033 | Msa0776030:intron |
| CTGGTGCTCTTTCTGGGGAA+TGG | 0.407810 | 5_2:-53337861 | None:intergenic |
| TACTAATGTTGCTGAAATAA+GGG | 0.414247 | 5_2:+53340749 | Msa0776030:three_prime_UTR |
| TTATTCGTTGGAATTAAGTT+CGG | 0.414784 | 5_2:-53340652 | None:intergenic |
| GTGAGGTGTCAAATACCTTA+TGG | 0.416873 | 5_2:-53339709 | None:intergenic |
| TCGGAGTTTCATGTTCGATC+AGG | 0.419556 | 5_2:+53340114 | Msa0776030:three_prime_UTR |
| ATCATTAGGTACGTCTGTTC+CGG | 0.423353 | 5_2:-53338102 | None:intergenic |
| TAATTTAAATTTCTATATGC+AGG | 0.423436 | 5_2:+53339131 | Msa0776030:three_prime_UTR |
| GTAAAATTATTGTGAGAATT+GGG | 0.435840 | 5_2:+53339194 | Msa0776030:three_prime_UTR |
| AATGTTCAAAGAATTATAAA+AGG | 0.436253 | 5_2:-53338731 | None:intergenic |
| ACGTCGCCAATTCTGGCTAT+TGG | 0.440204 | 5_2:-53340144 | None:intergenic |
| TCTATGCACAATAGAAAGTC+TGG | 0.445128 | 5_2:+53338218 | Msa0776030:CDS |
| TTGGCTTTGCTAAATGCAAC+GGG | 0.451485 | 5_2:+53338674 | Msa0776030:CDS |
| TTTCAACATCTGTTATTCGT+TGG | 0.452009 | 5_2:-53340664 | None:intergenic |
| TCCTGATAGAGTTCACTCCT+TGG | 0.452816 | 5_2:+53338655 | Msa0776030:CDS |
| TAAATATATTATACATGAAA+GGG | 0.463075 | 5_2:-53340083 | None:intergenic |
| GAAACACCAATAGCCAGAAT+TGG | 0.463207 | 5_2:+53340138 | Msa0776030:three_prime_UTR |
| GGGTGGGGTCGACAAACAAC+GGG | 0.471193 | 5_2:+53338074 | Msa0776030:CDS |
| AGGACAATCTCCTAAGGCTT+AGG | 0.474201 | 5_2:-53340705 | None:intergenic |
| TATAGCTTCTCCTAAGCCTT+AGG | 0.477644 | 5_2:+53340695 | Msa0776030:three_prime_UTR |
| ATAAATATATTATACATGAA+AGG | 0.478888 | 5_2:-53340084 | None:intergenic |
| TTGATCATTGGGGCGTGGGT+CGG | 0.479284 | 5_2:+53338192 | Msa0776030:CDS |
| ATATGGTGATAAGAAGATGC+AGG | 0.481362 | 5_2:-53339101 | None:intergenic |
| TGTCCGACACAAACATGGTT+GGG | 0.482898 | 5_2:-53339402 | None:intergenic |
| TCGTGGTTGCCCAATATTCG+TGG | 0.494683 | 5_2:+53339753 | Msa0776030:three_prime_UTR |
| TGCCTTTGACACACAAGGGT+GGG | 0.502809 | 5_2:+53338058 | Msa0776030:CDS |
| CGGAGTTTCATGTTCGATCA+GGG | 0.503460 | 5_2:+53340115 | Msa0776030:three_prime_UTR |
| AAGGGCTATTTCATAAATGA+AGG | 0.507074 | 5_2:-53340065 | None:intergenic |
| GCCTTTGACACACAAGGGTG+GGG | 0.507799 | 5_2:+53338059 | Msa0776030:CDS |
| AATAGAAAGTCTGGTCATCA+AGG | 0.509431 | 5_2:+53338227 | Msa0776030:CDS |
| GCAAGGGATTGAATGTACTT+TGG | 0.513385 | 5_2:+53340574 | Msa0776030:three_prime_UTR |
| ATTAAGTTCGGCTCATGTGT+TGG | 0.516857 | 5_2:-53340640 | None:intergenic |
| CTTGGTTCAAGCTATTAGCC+AGG | 0.517123 | 5_2:+53339267 | Msa0776030:three_prime_UTR |
| ATCTCCACTTCCGTTGATGT+TGG | 0.519594 | 5_2:+53339905 | Msa0776030:three_prime_UTR |
| AATACCAACATCAACGGAAG+TGG | 0.519901 | 5_2:-53339909 | None:intergenic |
| TGAACCACAGAAACTATAAG+AGG | 0.523659 | 5_2:+53339483 | Msa0776030:three_prime_UTR |
| ATAAAAGGTACATATACCTC+TGG | 0.523727 | 5_2:-53338716 | None:intergenic |
| GGTGTCAAATACCTTATGGC+AGG | 0.529290 | 5_2:-53339705 | None:intergenic |
| ATCACCTCTTATAGTTTCTG+TGG | 0.529669 | 5_2:-53339487 | None:intergenic |
| CTTGGCTTTGCTAAATGCAA+CGG | 0.535516 | 5_2:+53338673 | Msa0776030:CDS |
| TATCTTTCATGTACGTACTC+TGG | 0.544100 | 5_2:-53337880 | None:intergenic |
| ACCCCACCCTTGTGTGTCAA+AGG | 0.547992 | 5_2:-53338060 | None:intergenic |
| GAATTGAGATCCCTGCCATA+AGG | 0.548179 | 5_2:+53339694 | Msa0776030:three_prime_UTR |
| TTGTCCGACACAAACATGGT+TGG | 0.556533 | 5_2:-53339403 | None:intergenic |
| AGCTTGTAAAATAGCAGCAA+TGG | 0.557695 | 5_2:+53338631 | Msa0776030:CDS |
| TAGTAGATATTGTACAATCA+AGG | 0.559319 | 5_2:-53340725 | None:intergenic |
| TAGAACAAATGTCCGTCCAT+AGG | 0.561149 | 5_2:-53337916 | None:intergenic |
| CAATCAAGGACAATCTCCTA+AGG | 0.561772 | 5_2:-53340711 | None:intergenic |
| TGTCTTGAGAAATACTTCAC+AGG | 0.562195 | 5_2:-53339040 | None:intergenic |
| TCGTAGCACTAAAATCGTCT+TGG | 0.562559 | 5_2:+53338952 | Msa0776030:three_prime_UTR |
| AGGGTGGGGTCGACAAACAA+CGG | 0.572450 | 5_2:+53338073 | Msa0776030:CDS |
| TTGAGAAATACTTCACAGGT+TGG | 0.573719 | 5_2:-53339036 | None:intergenic |
| GCAATCCTCGATACCACCAC+TGG | 0.574989 | 5_2:-53338165 | None:intergenic |
| AGGATTGCCTTTGACACACA+AGG | 0.578167 | 5_2:+53338053 | Msa0776030:CDS |
| AACATTGTCCGACACAAACA+TGG | 0.587239 | 5_2:-53339407 | None:intergenic |
| CGTTGCATTTAGCAAAGCCA+AGG | 0.590169 | 5_2:-53338672 | None:intergenic |
| TTTACTGCTCAACCTATGGA+CGG | 0.593051 | 5_2:+53337904 | Msa0776030:CDS |
| TGTTTGTGTCAGATATGTTG+TGG | 0.598784 | 5_2:+53339366 | Msa0776030:intron |
| TAATATATTTATGAAAGAGT+CGG | 0.599966 | 5_2:+53340095 | Msa0776030:three_prime_UTR |
| GACATTGTTTGGAACAACCA+AGG | 0.606311 | 5_2:-53340847 | None:intergenic |
| CTTGCTTTCAGGAAAAGCAG+TGG | 0.613067 | 5_2:-53339447 | None:intergenic |
| TATGGTGATAAGAAGATGCA+GGG | 0.613570 | 5_2:-53339100 | None:intergenic |
| TATGGATATTGTTGAATGCG+AGG | 0.615803 | 5_2:+53339672 | Msa0776030:three_prime_UTR |
| TTGCCTTTGACACACAAGGG+TGG | 0.618428 | 5_2:+53338057 | Msa0776030:CDS |
| CATATCAATACCAACATCAA+CGG | 0.619493 | 5_2:-53339915 | None:intergenic |
| CCAAAGAAGGCAGTGAACAA+TGG | 0.620768 | 5_2:+53340613 | Msa0776030:three_prime_UTR |
| GTGTCAAATACCTTATGGCA+GGG | 0.624744 | 5_2:-53339704 | None:intergenic |
| GGAGTTTCATGTTCGATCAG+GGG | 0.626050 | 5_2:+53340116 | Msa0776030:three_prime_UTR |
| GTACTCTGGTGCTCTTTCTG+GGG | 0.627433 | 5_2:-53337866 | None:intergenic |
| CAAACTTAGTTCAGTACGAG+TGG | 0.627445 | 5_2:+53338851 | Msa0776030:three_prime_UTR |
| TGAGTCCAGTGGTGGTATCG+AGG | 0.631616 | 5_2:+53338160 | Msa0776030:CDS |
| AGTCCCAACCATGTTTGTGT+CGG | 0.643631 | 5_2:+53339399 | Msa0776030:three_prime_UTR |
| GCTTTGCTAAATGCAACGGG+TGG | 0.649542 | 5_2:+53338677 | Msa0776030:CDS |
| GGTGACAATGAGTCCAGTGG+TGG | 0.656389 | 5_2:+53338152 | Msa0776030:CDS |
| GACGTACCTAATGATGAAGA+CGG | 0.660600 | 5_2:+53338110 | Msa0776030:CDS |
| GGATTGCCTTTGACACACAA+GGG | 0.671237 | 5_2:+53338054 | Msa0776030:CDS |
| GGAGGTGACAATGAGTCCAG+TGG | 0.677714 | 5_2:+53338149 | Msa0776030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATTTTGATTTATTTTTT+CGG | + | chr5_2:53338748-53338767 | Msa0776030:exon | 10.0% |
| !! | ATTTAAATTAGAAAGTAATA+TGG | - | chr5_2:53339121-53339140 | None:intergenic | 10.0% |
| !! | TATATTAAAGTTAATACTAT+AGG | - | chr5_2:53339956-53339975 | None:intergenic | 10.0% |
| !! | TAAATATATTATACATGAAA+GGG | - | chr5_2:53340086-53340105 | None:intergenic | 10.0% |
| !! | ATAAATATATTATACATGAA+AGG | - | chr5_2:53340087-53340106 | None:intergenic | 10.0% |
| !!! | CAATACATATTTTATTTAAA+AGG | + | chr5_2:53340869-53340888 | Msa0776030:three_prime_UTR | 10.0% |
| !!! | AGTTTTTGAATGTAATTATA+TGG | + | chr5_2:53338332-53338351 | Msa0776030:intron | 15.0% |
| !!! | GTTTTTGAATGTAATTATAT+GGG | + | chr5_2:53338333-53338352 | Msa0776030:intron | 15.0% |
| !! | AATGTTCAAAGAATTATAAA+AGG | - | chr5_2:53338734-53338753 | None:intergenic | 15.0% |
| !!! | AGATTTTTAAAGAATATTGA+CGG | + | chr5_2:53338987-53339006 | Msa0776030:three_prime_UTR | 15.0% |
| !! | TAATTTAAATTTCTATATGC+AGG | + | chr5_2:53339131-53339150 | Msa0776030:three_prime_UTR | 15.0% |
| !! | TAATATATTTATGAAAGAGT+CGG | + | chr5_2:53340095-53340114 | Msa0776030:three_prime_UTR | 15.0% |
| !!! | GATAGAATTTTAAATATGTT+TGG | - | chr5_2:53340469-53340488 | None:intergenic | 15.0% |
| !!! | TATTTAAAATTCTATCCTTA+TGG | + | chr5_2:53340473-53340492 | Msa0776030:intron | 15.0% |
| !!! | TAAAGGAATTTAATGTATTT+TGG | + | chr5_2:53340539-53340558 | Msa0776030:intron | 15.0% |
| !!! | TTTTAATTTTGCTGATTTTG+TGG | + | chr5_2:53338005-53338024 | Msa0776030:intron | 20.0% |
| !! | ATAATTTACAAAGAGTGAAA+TGG | + | chr5_2:53338376-53338395 | Msa0776030:intron | 20.0% |
| !! | TGAAATGGAAATTTGAATAT+TGG | + | chr5_2:53338391-53338410 | Msa0776030:intron | 20.0% |
| !!! | ATGCAATTACTTTATGTTTT+TGG | + | chr5_2:53338454-53338473 | Msa0776030:intron | 20.0% |
| !!! | TGCAATTACTTTATGTTTTT+GGG | + | chr5_2:53338455-53338474 | Msa0776030:intron | 20.0% |
| !! | TGATTTAGTTAAAATTCAGA+CGG | + | chr5_2:53338524-53338543 | Msa0776030:intron | 20.0% |
| !! | AAGTTTGTAATTAAAAAGTG+TGG | - | chr5_2:53338838-53338857 | None:intergenic | 20.0% |
| !! | GTAAAATTATTGTGAGAATT+GGG | + | chr5_2:53339194-53339213 | Msa0776030:three_prime_UTR | 20.0% |
| !!! | CACTTTGTTATCAAATAAAA+TGG | - | chr5_2:53339542-53339561 | None:intergenic | 20.0% |
| !!! | TCATTCCAATAAACAAATTT+TGG | - | chr5_2:53339782-53339801 | None:intergenic | 20.0% |
| !!! | AAAAATAAATTAGTTTGACG+AGG | - | chr5_2:53340309-53340328 | None:intergenic | 20.0% |
| !! | AATAGTATATTGTAGATGTA+TGG | + | chr5_2:53340506-53340525 | Msa0776030:intron | 20.0% |
| !!! | AAATATGTATTGACATTGTT+TGG | - | chr5_2:53340861-53340880 | None:intergenic | 20.0% |
| !! | TTAATCAAATTATTGCCTTA+TGG | + | chr5_2:53340917-53340936 | Msa0776030:three_prime_UTR | 20.0% |
| ! | TTGAATGTAATTATATGGGT+TGG | + | chr5_2:53338337-53338356 | Msa0776030:intron | 25.0% |
| ! | AATATTGGTGAATGATTGTT+GGG | + | chr5_2:53338406-53338425 | Msa0776030:intron | 25.0% |
| ! | TTAACTACATTAATGATTGC+TGG | + | chr5_2:53338812-53338831 | Msa0776030:three_prime_UTR | 25.0% |
| ! | GTTGAGAATTTATCTTTCTA+TGG | + | chr5_2:53338908-53338927 | Msa0776030:three_prime_UTR | 25.0% |
| ! | GGTAAAATTATTGTGAGAAT+TGG | + | chr5_2:53339193-53339212 | Msa0776030:three_prime_UTR | 25.0% |
| ! | ATGCAACAAATCAAAATTCT+TGG | + | chr5_2:53339249-53339268 | Msa0776030:three_prime_UTR | 25.0% |
| ! | TGCTAATCTACTAAAATACA+TGG | - | chr5_2:53339584-53339603 | None:intergenic | 25.0% |
| !! | ACTTATTTCTCTTTGAACTA+TGG | + | chr5_2:53339654-53339673 | Msa0776030:three_prime_UTR | 25.0% |
| !! | GGTTTCCAAAATTTGTTTAT+TGG | + | chr5_2:53339774-53339793 | Msa0776030:three_prime_UTR | 25.0% |
| !!! | ATTTTTGTCTGAGACAAAAT+CGG | + | chr5_2:53339842-53339861 | Msa0776030:three_prime_UTR | 25.0% |
| ! | TAACGATAATCTGACAAATT+AGG | - | chr5_2:53339881-53339900 | None:intergenic | 25.0% |
| ! | TTATGGTTAATTTCAAGGTA+AGG | + | chr5_2:53340239-53340258 | Msa0776030:intron | 25.0% |
| ! | ATACATTTCGAAACTTTAGT+CGG | + | chr5_2:53340332-53340351 | Msa0776030:intron | 25.0% |
| !! | ATGTTTGGTGAAAAAATGAT+CGG | - | chr5_2:53340454-53340473 | None:intergenic | 25.0% |
| !!! | CTATTTTTTTCTTTGCCATA+AGG | - | chr5_2:53340491-53340510 | None:intergenic | 25.0% |
| ! | TGTATGGTAAGATTTGATAA+AGG | + | chr5_2:53340522-53340541 | Msa0776030:intron | 25.0% |
| ! | TTATTCGTTGGAATTAAGTT+CGG | - | chr5_2:53340655-53340674 | None:intergenic | 25.0% |
| ! | TAGTAGATATTGTACAATCA+AGG | - | chr5_2:53340728-53340747 | None:intergenic | 25.0% |
| ! | TACTAATGTTGCTGAAATAA+GGG | + | chr5_2:53340749-53340768 | Msa0776030:three_prime_UTR | 25.0% |
| ! | ATATTTTACTGCTCAACCTA+TGG | + | chr5_2:53337900-53337919 | Msa0776030:CDS | 30.0% |
| TTTGTGGAGATTGAATTGAA+TGG | + | chr5_2:53338021-53338040 | Msa0776030:intron | 30.0% | |
| GAATATTGGTGAATGATTGT+TGG | + | chr5_2:53338405-53338424 | Msa0776030:intron | 30.0% | |
| CTCAACCTAATCAAATCTTA+GGG | - | chr5_2:53338554-53338573 | None:intergenic | 30.0% | |
| ACTCAACCTAATCAAATCTT+AGG | - | chr5_2:53338555-53338574 | None:intergenic | 30.0% | |
| TATTGTTTGCCTATTGAAAC+AGG | + | chr5_2:53338599-53338618 | Msa0776030:intron | 30.0% | |
| ATCATAGATCCTGTTTCAAT+AGG | - | chr5_2:53338611-53338630 | None:intergenic | 30.0% | |
| ! | AGATTTTCAATGTTTTCCAG+AGG | + | chr5_2:53338700-53338719 | Msa0776030:CDS | 30.0% |
| ! | ATAAAAGGTACATATACCTC+TGG | - | chr5_2:53338719-53338738 | None:intergenic | 30.0% |
| CTCAACTAAATTTGTCCTAA+AGG | - | chr5_2:53338894-53338913 | None:intergenic | 30.0% | |
| TATTTCTCAAGACAGTTATC+TGG | + | chr5_2:53339049-53339068 | Msa0776030:three_prime_UTR | 30.0% | |
| ! | CAGCTTCAATTCTAAAGATA+TGG | - | chr5_2:53339220-53339239 | None:intergenic | 30.0% |
| ! | ACTATAAGAGGTGATGATTT+TGG | + | chr5_2:53339495-53339514 | Msa0776030:intron | 30.0% |
| !! | TTTTGGAAACCACGAATATT+GGG | - | chr5_2:53339765-53339784 | None:intergenic | 30.0% |
| !! | ATTTTGGAAACCACGAATAT+TGG | - | chr5_2:53339766-53339785 | None:intergenic | 30.0% |
| CATATCAATACCAACATCAA+CGG | - | chr5_2:53339918-53339937 | None:intergenic | 30.0% | |
| ATGTATCCATGAAAATATGC+AGG | + | chr5_2:53340035-53340054 | Msa0776030:intron | 30.0% | |
| ! | AAGGGCTATTTCATAAATGA+AGG | - | chr5_2:53340068-53340087 | None:intergenic | 30.0% |
| CGACGTTGTTAAACAATATT+AGG | + | chr5_2:53340161-53340180 | Msa0776030:three_prime_UTR | 30.0% | |
| !! | TTAGTCGGCTTTCTTTTTAT+TGG | + | chr5_2:53340347-53340366 | Msa0776030:intron | 30.0% |
| !!! | TGTATTTTGGTCATACATAC+AGG | + | chr5_2:53340552-53340571 | Msa0776030:intron | 30.0% |
| !! | TCTTTGGAGATTGATTTTTC+AGG | - | chr5_2:53340600-53340619 | None:intergenic | 30.0% |
| GAAAAATCAATCTCCAAAGA+AGG | + | chr5_2:53340600-53340619 | Msa0776030:three_prime_UTR | 30.0% | |
| TTTCAACATCTGTTATTCGT+TGG | - | chr5_2:53340667-53340686 | None:intergenic | 30.0% | |
| GTACTAATGTTGCTGAAATA+AGG | + | chr5_2:53340748-53340767 | Msa0776030:three_prime_UTR | 30.0% | |
| AAAAACTACACTAGAGGAAT+GGG | - | chr5_2:53340796-53340815 | None:intergenic | 30.0% | |
| AAAAAACTACACTAGAGGAA+TGG | - | chr5_2:53340797-53340816 | None:intergenic | 30.0% | |
| !!! | TACTGATTTTAGCTTCCATA+AGG | - | chr5_2:53340935-53340954 | None:intergenic | 30.0% |
| TATCTTTCATGTACGTACTC+TGG | - | chr5_2:53337883-53337902 | None:intergenic | 35.0% | |
| ACGGACATTTGTTCTAATTC+TGG | + | chr5_2:53337923-53337942 | Msa0776030:CDS | 35.0% | |
| GGAGATTGAATTGAATGGTT+AGG | + | chr5_2:53338026-53338045 | Msa0776030:intron | 35.0% | |
| GAATTGAATGGTTAGGACTT+AGG | + | chr5_2:53338033-53338052 | Msa0776030:intron | 35.0% | |
| !! | AGGATTGCGATTTTGATCAT+TGG | + | chr5_2:53338180-53338199 | Msa0776030:CDS | 35.0% |
| !! | GGATTGCGATTTTGATCATT+GGG | + | chr5_2:53338181-53338200 | Msa0776030:CDS | 35.0% |
| !! | GATTGCGATTTTGATCATTG+GGG | + | chr5_2:53338182-53338201 | Msa0776030:CDS | 35.0% |
| TCTATGCACAATAGAAAGTC+TGG | + | chr5_2:53338218-53338237 | Msa0776030:CDS | 35.0% | |
| AATAGAAAGTCTGGTCATCA+AGG | + | chr5_2:53338227-53338246 | Msa0776030:CDS | 35.0% | |
| !!! | TTATGTTTTTGGGCACTCAA+CGG | + | chr5_2:53338465-53338484 | Msa0776030:intron | 35.0% |
| GTTTGCCCTAAGATTTGATT+AGG | + | chr5_2:53338546-53338565 | Msa0776030:intron | 35.0% | |
| AGCTTGTAAAATAGCAGCAA+TGG | + | chr5_2:53338631-53338650 | Msa0776030:CDS | 35.0% | |
| !! | CTGATTTTAGGTGATCCTTT+AGG | + | chr5_2:53338876-53338895 | Msa0776030:three_prime_UTR | 35.0% |
| TTGAGAAATACTTCACAGGT+TGG | - | chr5_2:53339039-53339058 | None:intergenic | 35.0% | |
| TGTCTTGAGAAATACTTCAC+AGG | - | chr5_2:53339043-53339062 | None:intergenic | 35.0% | |
| TATGGTGATAAGAAGATGCA+GGG | - | chr5_2:53339103-53339122 | None:intergenic | 35.0% | |
| ATATGGTGATAAGAAGATGC+AGG | - | chr5_2:53339104-53339123 | None:intergenic | 35.0% | |
| ! | TTGCTTTCTCAGTTTTTGTG+TGG | + | chr5_2:53339160-53339179 | Msa0776030:three_prime_UTR | 35.0% |
| ! | GTTTTTGTGTGGAATGTCTA+CGG | + | chr5_2:53339171-53339190 | Msa0776030:three_prime_UTR | 35.0% |
| ! | TTTTTGTGTGGAATGTCTAC+GGG | + | chr5_2:53339172-53339191 | Msa0776030:three_prime_UTR | 35.0% |
| TGTGTATACAGCTCTTCATT+AGG | + | chr5_2:53339290-53339309 | Msa0776030:intron | 35.0% | |
| TATACAGCTCTTCATTAGGA+AGG | + | chr5_2:53339294-53339313 | Msa0776030:intron | 35.0% | |
| TGTTTGTGTCAGATATGTTG+TGG | + | chr5_2:53339366-53339385 | Msa0776030:intron | 35.0% | |
| TTTGTGTCGGACAATGTTAA+TGG | + | chr5_2:53339412-53339431 | Msa0776030:three_prime_UTR | 35.0% | |
| TGAACCACAGAAACTATAAG+AGG | + | chr5_2:53339483-53339502 | Msa0776030:three_prime_UTR | 35.0% | |
| ATCACCTCTTATAGTTTCTG+TGG | - | chr5_2:53339490-53339509 | None:intergenic | 35.0% | |
| TATGGATATTGTTGAATGCG+AGG | + | chr5_2:53339672-53339691 | Msa0776030:three_prime_UTR | 35.0% | |
| CCACGAATATTCAAAAACTC+AGG | - | chr5_2:53339739-53339758 | None:intergenic | 35.0% | |
| ! | CCTGAGTTTTTGAATATTCG+TGG | + | chr5_2:53339736-53339755 | Msa0776030:three_prime_UTR | 35.0% |
| !! | CGTTGATGTTGGTATTGATA+TGG | + | chr5_2:53339916-53339935 | Msa0776030:three_prime_UTR | 35.0% |
| AGCAAAGAGCTATCAGTTAA+AGG | - | chr5_2:53340217-53340236 | None:intergenic | 35.0% | |
| TTTAACTGATAGCTCTTTGC+TGG | + | chr5_2:53340216-53340235 | Msa0776030:three_prime_UTR | 35.0% | |
| GCTGGTTATGGTTAATTTCA+AGG | + | chr5_2:53340234-53340253 | Msa0776030:three_prime_UTR | 35.0% | |
| ! | TAATCAGACATTTTGTGCCT+TGG | + | chr5_2:53340830-53340849 | Msa0776030:three_prime_UTR | 35.0% |
| TTTACTGCTCAACCTATGGA+CGG | + | chr5_2:53337904-53337923 | Msa0776030:CDS | 40.0% | |
| TAGAACAAATGTCCGTCCAT+AGG | - | chr5_2:53337919-53337938 | None:intergenic | 40.0% | |
| ATCATTAGGTACGTCTGTTC+CGG | - | chr5_2:53338105-53338124 | None:intergenic | 40.0% | |
| GACGTACCTAATGATGAAGA+CGG | + | chr5_2:53338110-53338129 | Msa0776030:CDS | 40.0% | |
| AAGAAGCCGTCTTCATCATT+AGG | - | chr5_2:53338119-53338138 | None:intergenic | 40.0% | |
| ! | ATGATGAAGACGGCTTCTTT+TGG | + | chr5_2:53338120-53338139 | Msa0776030:CDS | 40.0% |
| !! | CTTGGCTTTGCTAAATGCAA+CGG | + | chr5_2:53338673-53338692 | Msa0776030:CDS | 40.0% |
| !! | TTGGCTTTGCTAAATGCAAC+GGG | + | chr5_2:53338674-53338693 | Msa0776030:CDS | 40.0% |
| CAAACTTAGTTCAGTACGAG+TGG | + | chr5_2:53338851-53338870 | Msa0776030:three_prime_UTR | 40.0% | |
| !!! | GTACGAGTGGTACTGATTTT+AGG | + | chr5_2:53338864-53338883 | Msa0776030:three_prime_UTR | 40.0% |
| TCGTAGCACTAAAATCGTCT+TGG | + | chr5_2:53338952-53338971 | Msa0776030:three_prime_UTR | 40.0% | |
| AACATTGTCCGACACAAACA+TGG | - | chr5_2:53339410-53339429 | None:intergenic | 40.0% | |
| CATCTCTTGTGAAACTGAAC+AGG | + | chr5_2:53339627-53339646 | Msa0776030:intron | 40.0% | |
| GTGTCAAATACCTTATGGCA+GGG | - | chr5_2:53339707-53339726 | None:intergenic | 40.0% | |
| ! | GTGAGGTGTCAAATACCTTA+TGG | - | chr5_2:53339712-53339731 | None:intergenic | 40.0% |
| TCAAAAACTCAGGTGAAGTG+AGG | - | chr5_2:53339729-53339748 | None:intergenic | 40.0% | |
| AATACCAACATCAACGGAAG+TGG | - | chr5_2:53339912-53339931 | None:intergenic | 40.0% | |
| ! | CCATCACCTGCATATTTTCA+TGG | - | chr5_2:53340044-53340063 | None:intergenic | 40.0% |
| CCATGAAAATATGCAGGTGA+TGG | + | chr5_2:53340041-53340060 | Msa0776030:intron | 40.0% | |
| GAAACACCAATAGCCAGAAT+TGG | + | chr5_2:53340138-53340157 | Msa0776030:three_prime_UTR | 40.0% | |
| TTTAACAACGTCGCCAATTC+TGG | - | chr5_2:53340154-53340173 | None:intergenic | 40.0% | |
| ! | TGATAGCTCTTTGCTGGTTA+TGG | + | chr5_2:53340222-53340241 | Msa0776030:three_prime_UTR | 40.0% |
| !!! | ATACTTTTTCCACCTCCTTG+TGG | + | chr5_2:53340386-53340405 | Msa0776030:intron | 40.0% |
| GGTGAAAAAATGATCGGTGA+AGG | - | chr5_2:53340448-53340467 | None:intergenic | 40.0% | |
| TTTGGTCATACATACAGGCA+AGG | + | chr5_2:53340557-53340576 | Msa0776030:intron | 40.0% | |
| TTGGTCATACATACAGGCAA+GGG | + | chr5_2:53340558-53340577 | Msa0776030:intron | 40.0% | |
| GCAAGGGATTGAATGTACTT+TGG | + | chr5_2:53340574-53340593 | Msa0776030:three_prime_UTR | 40.0% | |
| ATTAAGTTCGGCTCATGTGT+TGG | - | chr5_2:53340643-53340662 | None:intergenic | 40.0% | |
| TATAGCTTCTCCTAAGCCTT+AGG | + | chr5_2:53340695-53340714 | Msa0776030:three_prime_UTR | 40.0% | |
| CAATCAAGGACAATCTCCTA+AGG | - | chr5_2:53340714-53340733 | None:intergenic | 40.0% | |
| CCAGCAAAAAACTACACTAG+AGG | - | chr5_2:53340802-53340821 | None:intergenic | 40.0% | |
| !!! | CCTCTAGTGTAGTTTTTTGC+TGG | + | chr5_2:53340799-53340818 | Msa0776030:three_prime_UTR | 40.0% |
| ! | GACATTGTTTGGAACAACCA+AGG | - | chr5_2:53340850-53340869 | None:intergenic | 40.0% |
| AGGATTGCCTTTGACACACA+AGG | + | chr5_2:53338053-53338072 | Msa0776030:CDS | 45.0% | |
| GGATTGCCTTTGACACACAA+GGG | + | chr5_2:53338054-53338073 | Msa0776030:CDS | 45.0% | |
| CGACAAACAACGGGATTAAC+CGG | + | chr5_2:53338083-53338102 | Msa0776030:CDS | 45.0% | |
| !! | GATTTTGATCATTGGGGCGT+GGG | + | chr5_2:53338188-53338207 | Msa0776030:CDS | 45.0% |
| CAGAACACTGATCATGGCAA+AGG | + | chr5_2:53338431-53338450 | Msa0776030:intron | 45.0% | |
| TCCTGATAGAGTTCACTCCT+TGG | + | chr5_2:53338655-53338674 | Msa0776030:CDS | 45.0% | |
| CGTTGCATTTAGCAAAGCCA+AGG | - | chr5_2:53338675-53338694 | None:intergenic | 45.0% | |
| CTTGGTTCAAGCTATTAGCC+AGG | + | chr5_2:53339267-53339286 | Msa0776030:three_prime_UTR | 45.0% | |
| TGAAGAGCTGTATACACACC+TGG | - | chr5_2:53339288-53339307 | None:intergenic | 45.0% | |
| AGTCCCAACCATGTTTGTGT+CGG | + | chr5_2:53339399-53339418 | Msa0776030:three_prime_UTR | 45.0% | |
| TGTCCGACACAAACATGGTT+GGG | - | chr5_2:53339405-53339424 | None:intergenic | 45.0% | |
| TTGTCCGACACAAACATGGT+TGG | - | chr5_2:53339406-53339425 | None:intergenic | 45.0% | |
| CTTGCTTTCAGGAAAAGCAG+TGG | - | chr5_2:53339450-53339469 | None:intergenic | 45.0% | |
| !! | CTGCTTTTCCTGAAAGCAAG+AGG | + | chr5_2:53339450-53339469 | Msa0776030:three_prime_UTR | 45.0% |
| ! | TGAAGCATCCTCTTGCTTTC+AGG | - | chr5_2:53339461-53339480 | None:intergenic | 45.0% |
| GAATTGAGATCCCTGCCATA+AGG | + | chr5_2:53339694-53339713 | Msa0776030:three_prime_UTR | 45.0% | |
| GGTGTCAAATACCTTATGGC+AGG | - | chr5_2:53339708-53339727 | None:intergenic | 45.0% | |
| ATCTCCACTTCCGTTGATGT+TGG | + | chr5_2:53339905-53339924 | Msa0776030:three_prime_UTR | 45.0% | |
| TCGGAGTTTCATGTTCGATC+AGG | + | chr5_2:53340114-53340133 | Msa0776030:three_prime_UTR | 45.0% | |
| CGGAGTTTCATGTTCGATCA+GGG | + | chr5_2:53340115-53340134 | Msa0776030:three_prime_UTR | 45.0% | |
| GGAGTTTCATGTTCGATCAG+GGG | + | chr5_2:53340116-53340135 | Msa0776030:three_prime_UTR | 45.0% | |
| ! | TTTTTCCACCTCCTTGTGGT+TGG | + | chr5_2:53340390-53340409 | Msa0776030:intron | 45.0% |
| GAAAACCAACTCCAACCACA+AGG | - | chr5_2:53340404-53340423 | None:intergenic | 45.0% | |
| !!! | TGTGGTTGGAGTTGGTTTTC+AGG | + | chr5_2:53340404-53340423 | Msa0776030:intron | 45.0% |
| CCATTGTTCACTGCCTTCTT+TGG | - | chr5_2:53340616-53340635 | None:intergenic | 45.0% | |
| CCAAAGAAGGCAGTGAACAA+TGG | + | chr5_2:53340613-53340632 | Msa0776030:three_prime_UTR | 45.0% | |
| AGGACAATCTCCTAAGGCTT+AGG | - | chr5_2:53340708-53340727 | None:intergenic | 45.0% | |
| !!! | AATACATATTTTATTTAAAA+GGG | + | chr5_2:53340870-53340889 | Msa0776030:three_prime_UTR | 5.0% |
| GTACTCTGGTGCTCTTTCTG+GGG | - | chr5_2:53337869-53337888 | None:intergenic | 50.0% | |
| CGTACTCTGGTGCTCTTTCT+GGG | - | chr5_2:53337870-53337889 | None:intergenic | 50.0% | |
| ACGTACTCTGGTGCTCTTTC+TGG | - | chr5_2:53337871-53337890 | None:intergenic | 50.0% | |
| TTGCCTTTGACACACAAGGG+TGG | + | chr5_2:53338057-53338076 | Msa0776030:CDS | 50.0% | |
| TGCCTTTGACACACAAGGGT+GGG | + | chr5_2:53338058-53338077 | Msa0776030:CDS | 50.0% | |
| !! | GAAGACGGCTTCTTTTGGAG+AGG | + | chr5_2:53338125-53338144 | Msa0776030:CDS | 50.0% |
| !! | CGATTTTGATCATTGGGGCG+TGG | + | chr5_2:53338187-53338206 | Msa0776030:CDS | 50.0% |
| TGGGTGCAGAACACTGATCA+TGG | + | chr5_2:53338425-53338444 | Msa0776030:intron | 50.0% | |
| GCCAAGGAGTGAACTCTATC+AGG | - | chr5_2:53338659-53338678 | None:intergenic | 50.0% | |
| GCTTTGCTAAATGCAACGGG+TGG | + | chr5_2:53338677-53338696 | Msa0776030:CDS | 50.0% | |
| TCGTGGTTGCCCAATATTCG+TGG | + | chr5_2:53339753-53339772 | Msa0776030:three_prime_UTR | 50.0% | |
| ! | ACGTCGCCAATTCTGGCTAT+TGG | - | chr5_2:53340147-53340166 | None:intergenic | 50.0% |
| AACCAACTCCAACCACAAGG+AGG | - | chr5_2:53340401-53340420 | None:intergenic | 50.0% | |
| ! | CTGGTGCTCTTTCTGGGGAA+TGG | - | chr5_2:53337864-53337883 | None:intergenic | 55.0% |
| GCCTTTGACACACAAGGGTG+GGG | + | chr5_2:53338059-53338078 | Msa0776030:CDS | 55.0% | |
| ACCCCACCCTTGTGTGTCAA+AGG | - | chr5_2:53338063-53338082 | None:intergenic | 55.0% | |
| AGGGTGGGGTCGACAAACAA+CGG | + | chr5_2:53338073-53338092 | Msa0776030:CDS | 55.0% | |
| !! | GACGGCTTCTTTTGGAGAGG+AGG | + | chr5_2:53338128-53338147 | Msa0776030:CDS | 55.0% |
| !! | GGCTTCTTTTGGAGAGGAGG+AGG | + | chr5_2:53338131-53338150 | Msa0776030:CDS | 55.0% |
| GGAGGTGACAATGAGTCCAG+TGG | + | chr5_2:53338149-53338168 | Msa0776030:CDS | 55.0% | |
| GGTGACAATGAGTCCAGTGG+TGG | + | chr5_2:53338152-53338171 | Msa0776030:CDS | 55.0% | |
| TGAGTCCAGTGGTGGTATCG+AGG | + | chr5_2:53338160-53338179 | Msa0776030:CDS | 55.0% | |
| GCAATCCTCGATACCACCAC+TGG | - | chr5_2:53338168-53338187 | None:intergenic | 55.0% | |
| TTGATCATTGGGGCGTGGGT+CGG | + | chr5_2:53338192-53338211 | Msa0776030:CDS | 55.0% | |
| CAACTCCAACCACAAGGAGG+TGG | - | chr5_2:53340398-53340417 | None:intergenic | 55.0% | |
| CACCTCCTTGTGGTTGGAGT+TGG | + | chr5_2:53340396-53340415 | Msa0776030:intron | 55.0% | |
| GGGTGGGGTCGACAAACAAC+GGG | + | chr5_2:53338074-53338093 | Msa0776030:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 53337854 | 53340995 | 53337854 | ID=Msa0776030;Name=Msa0776030 |
| chr5_2 | mRNA | 53337854 | 53340995 | 53337854 | ID=Msa0776030-mRNA-1;Parent=Msa0776030;Name=Msa0776030-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.83|0.71|0.85|0.33|0.28|7|1577|139 |
| chr5_2 | exon | 53337854 | 53337944 | 53337854 | ID=Msa0776030-mRNA-1:exon:15981;Parent=Msa0776030-mRNA-1 |
| chr5_2 | exon | 53338048 | 53338248 | 53338048 | ID=Msa0776030-mRNA-1:exon:15982;Parent=Msa0776030-mRNA-1 |
| chr5_2 | exon | 53338621 | 53339288 | 53338621 | ID=Msa0776030-mRNA-1:exon:15983;Parent=Msa0776030-mRNA-1 |
| chr5_2 | exon | 53339378 | 53339504 | 53339378 | ID=Msa0776030-mRNA-1:exon:15984;Parent=Msa0776030-mRNA-1 |
| chr5_2 | exon | 53339649 | 53339937 | 53339649 | ID=Msa0776030-mRNA-1:exon:15985;Parent=Msa0776030-mRNA-1 |
| chr5_2 | exon | 53340057 | 53340255 | 53340057 | ID=Msa0776030-mRNA-1:exon:15986;Parent=Msa0776030-mRNA-1 |
| chr5_2 | exon | 53340574 | 53340995 | 53340574 | ID=Msa0776030-mRNA-1:exon:15987;Parent=Msa0776030-mRNA-1 |
| chr5_2 | CDS | 53337854 | 53337944 | 53337854 | ID=Msa0776030-mRNA-1:cds;Parent=Msa0776030-mRNA-1 |
| chr5_2 | CDS | 53338048 | 53338248 | 53338048 | ID=Msa0776030-mRNA-1:cds;Parent=Msa0776030-mRNA-1 |
| chr5_2 | CDS | 53338621 | 53338748 | 53338621 | ID=Msa0776030-mRNA-1:cds;Parent=Msa0776030-mRNA-1 |
| chr5_2 | three_prime_UTR | 53338749 | 53339288 | 53338749 | ID=Msa0776030-mRNA-1:three_prime_utr;Parent=Msa0776030-mRNA-1 |
| chr5_2 | three_prime_UTR | 53339378 | 53339504 | 53339378 | ID=Msa0776030-mRNA-1:three_prime_utr;Parent=Msa0776030-mRNA-1 |
| chr5_2 | three_prime_UTR | 53339649 | 53339937 | 53339649 | ID=Msa0776030-mRNA-1:three_prime_utr;Parent=Msa0776030-mRNA-1 |
| chr5_2 | three_prime_UTR | 53340057 | 53340255 | 53340057 | ID=Msa0776030-mRNA-1:three_prime_utr;Parent=Msa0776030-mRNA-1 |
| chr5_2 | three_prime_UTR | 53340574 | 53340995 | 53340574 | ID=Msa0776030-mRNA-1:three_prime_utr;Parent=Msa0776030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
