AlfalfaGEDB | Msa0577580

M. sativa cultivar zhongmu-4 / Msa0577580

KEGG: K02685
GO: GO:0000228 GO:0000428 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005658 GO:0005694 GO:0006139 GO:0006259 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234
PFAM: PF04104.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0577580	XP_003630496.2	90.132	456	5	2	1	416	1	456	0.0	841

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0577580	sp\|Q84WJ2\|PRI2_ARATH	66.297	451	109	3	1	411	1	448	0.0	617

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0577580	G7LHA9	90.132	456	5	2	1	416	1	456	0.0	841

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0298470	Msa0577580	0.810206	1.293745e-50	-8.615850e-47
Msa0367520	Msa0577580	0.810175	1.313817e-50	-8.615850e-47
Msa0481890	Msa0577580	0.802351	5.847765e-49	-8.615850e-47
Msa0567170	Msa0577580	0.813563	2.403033e-51	-8.615850e-47
Msa0577580	Msa0658640	0.807225	5.607040e-50	-8.615850e-47
Msa0577580	Msa1078150	0.800073	1.709932e-48	-8.615850e-47
Msa0577580	Msa1226520	0.806347	8.595358e-50	-8.615850e-47
Msa0577580	Msa1306910	0.967389	3.282832e-127	-8.615850e-47
Msa0577580	Msa1356060	0.842899	1.950860e-58	-8.615850e-47
Msa0577580	Msa1421570	0.818254	2.157057e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0577580	MtrunA17_Chr8g0377591	90.132	456	5	2	1	416	1	456	0.0	841

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0577580	AT1G67320.2	66.297	451	109	3	1	411	1	448	617
Msa0577580	AT1G67320.1	65.410	451	108	4	1	411	1	443	602
Msa0577580	AT1G67320.3	61.396	487	109	4	1	411	1	484	599

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Find 118 sgRNAs with CRISPR-Local

Find 486 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGCAAGTGCATCATCA+AGG	0.582984	4_1:-81920962	None:intergenic
AACAGGTGACGCATGCACAG+AGG	0.745591	4_1:-81920463	None:intergenic
AAGAGAATCTAACCTGTGAA+TGG	0.555184	4_1:-81923801	None:intergenic
AAGAGCTGCTCTCAGCAGAA+TGG	0.494662	4_1:+81922780	Msa0577580:CDS
AAGGTTATTTCATCAACTCC+TGG	0.524352	4_1:+81921612	Msa0577580:CDS
AAGTTCCAGAACTTGTAGCT+CGG	0.624924	4_1:+81919805	Msa0577580:CDS
AATAAGTTCCGGTGACTCTG+AGG	0.644490	4_1:-81916912	None:intergenic
ACCAACAAAACCTGTTTGTA+AGG	0.470128	4_1:-81920026	None:intergenic
ACCCAGATAACTTGAGCTCA+AGG	0.568417	4_1:-81920265	None:intergenic
ACGGGGTTAACACAAATATC+AGG	0.447122	4_1:-81924182	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATTATGATTCAAACCCT+AGG	-	chr4_1:81917131-81917150	None:intergenic	30.0%
AGGGTTTGAATCATAATTTG+AGG	+	chr4_1:81917131-81917150	Msa0577580:intron	30.0%
GGGTTTGAATCATAATTTGA+GGG	+	chr4_1:81917132-81917151	Msa0577580:intron	30.0%
TTGAATGTAATCACTTGTGT+AGG	-	chr4_1:81917278-81917297	None:intergenic	30.0%
AACAGCATATGATTAAGCTT+TGG	-	chr4_1:81918148-81918167	None:intergenic	30.0%
CTTAATCATATGCTGTTGTT+TGG	+	chr4_1:81918151-81918170	Msa0577580:intron	30.0%
TTTAACATTGGTGAGTCAAT+TGG	+	chr4_1:81918236-81918255	Msa0577580:intron	30.0%
CATTCTTTATGTAATTGGAG+TGG	+	chr4_1:81918323-81918342	Msa0577580:intron	30.0%
CAATGTGTGTATAATATACG+TGG	-	chr4_1:81918361-81918380	None:intergenic	30.0%
TGTCTGAAAAATTGTCATTC+GGG	-	chr4_1:81918386-81918405	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	81916897	81924349	81916897	ID=Msa0577580;Name=Msa0577580
chr4_1	mRNA	81916897	81924349	81916897	ID=Msa0577580-mRNA-1;Parent=Msa0577580;Name=Msa0577580-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.88\|0.89\|1\|0.83\|0.84\|19\|448\|416
chr4_1	exon	81916897	81916998	81916897	ID=Msa0577580-mRNA-1:exon:29552;Parent=Msa0577580-mRNA-1
chr4_1	exon	81917567	81917658	81917567	ID=Msa0577580-mRNA-1:exon:29553;Parent=Msa0577580-mRNA-1
chr4_1	exon	81918522	81918603	81918522	ID=Msa0577580-mRNA-1:exon:29554;Parent=Msa0577580-mRNA-1
chr4_1	exon	81918686	81918745	81918686	ID=Msa0577580-mRNA-1:exon:29555;Parent=Msa0577580-mRNA-1
chr4_1	exon	81918879	81918936	81918879	ID=Msa0577580-mRNA-1:exon:29556;Parent=Msa0577580-mRNA-1
chr4_1	exon	81919349	81919368	81919349	ID=Msa0577580-mRNA-1:exon:29557;Parent=Msa0577580-mRNA-1
chr4_1	exon	81919792	81919875	81919792	ID=Msa0577580-mRNA-1:exon:29558;Parent=Msa0577580-mRNA-1
chr4_1	exon	81919973	81920037	81919973	ID=Msa0577580-mRNA-1:exon:29559;Parent=Msa0577580-mRNA-1
chr4_1	exon	81920133	81920181	81920133	ID=Msa0577580-mRNA-1:exon:29560;Parent=Msa0577580-mRNA-1
chr4_1	exon	81920255	81920302	81920255	ID=Msa0577580-mRNA-1:exon:29561;Parent=Msa0577580-mRNA-1
chr4_1	exon	81920403	81920492	81920403	ID=Msa0577580-mRNA-1:exon:29562;Parent=Msa0577580-mRNA-1
chr4_1	exon	81920669	81920728	81920669	ID=Msa0577580-mRNA-1:exon:29563;Parent=Msa0577580-mRNA-1
chr4_1	exon	81920948	81921007	81920948	ID=Msa0577580-mRNA-1:exon:29564;Parent=Msa0577580-mRNA-1
chr4_1	exon	81921309	81921383	81921309	ID=Msa0577580-mRNA-1:exon:29565;Parent=Msa0577580-mRNA-1
chr4_1	exon	81921588	81921673	81921588	ID=Msa0577580-mRNA-1:exon:29566;Parent=Msa0577580-mRNA-1
chr4_1	exon	81922768	81922861	81922768	ID=Msa0577580-mRNA-1:exon:29567;Parent=Msa0577580-mRNA-1
chr4_1	exon	81922948	81923055	81922948	ID=Msa0577580-mRNA-1:exon:29568;Parent=Msa0577580-mRNA-1
chr4_1	exon	81923746	81923810	81923746	ID=Msa0577580-mRNA-1:exon:29569;Parent=Msa0577580-mRNA-1
chr4_1	exon	81923949	81924349	81923949	ID=Msa0577580-mRNA-1:exon:29570;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81916897	81916998	81916897	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81917567	81917658	81917567	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81918522	81918603	81918522	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81918686	81918745	81918686	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81918879	81918936	81918879	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81919349	81919368	81919349	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81919792	81919875	81919792	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81919973	81920037	81919973	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81920133	81920181	81920133	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81920255	81920302	81920255	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81920403	81920492	81920403	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81920669	81920728	81920669	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81920948	81921007	81920948	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81921309	81921383	81921309	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81921588	81921673	81921588	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81922768	81922861	81922768	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81922948	81923055	81922948	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	CDS	81923746	81923763	81923746	ID=Msa0577580-mRNA-1:cds;Parent=Msa0577580-mRNA-1
chr4_1	three_prime_UTR	81923764	81923810	81923764	ID=Msa0577580-mRNA-1:three_prime_utr;Parent=Msa0577580-mRNA-1
chr4_1	three_prime_UTR	81923949	81924349	81923949	ID=Msa0577580-mRNA-1:three_prime_utr;Parent=Msa0577580-mRNA-1

Gene Sequence

>Msa0577580

ATGGAAGTTGTTCGACCTCAGAGTCACCGGAACTTATTTTCCTCAAACGACGCCGTTTCTGCCCCAACTATTCCCCTCTATCGCTCTGCTCCGTCACTCGAAGTCAAGGACCTATGGAAAATGAACATGAGACATCAGCATGCTTCTGAAATTCTGAACAAGGATATTATATCTCATTTTGTTTTACGTCTCGTGGAGGACTTGAGGAAATGGTTTCTCTCTATGGAATGTGCACTTTTTCGCTACCGTTTTCGTTTTCTAACTACTGAAGCTCAGAGGGCGATCATGGACGAATTTGACCTTACTTGCAAGGCTGTTAACAATGTGGAATTTGAGAGCATAAAAGAGAAATTGGGACAAGTTGCACGTTCCATGGGTCAGCCTTCACCCACAGCTGATGCTATCTTTTACAAGGTACCATTTGAAGAAGTTCCAGAACTTGTAGCTCGGCGTCAAGTGTTTATAAGTCAAGGATATGCTTATGTTGCAATGAATCAGGTTGTTTCGCTTGTAGCCACGCTATTCCGCAGTCAGTTGTCAAAGACACTCGTCCTTACAAACAGAAAATGGACATCTTCAATCAGAGAACAAGAGAAACATAGATTGACTCCTATTGTGGAAGCCTTGAGCTCAAGTTATCTGGGTCCTGATTTTTCTCAGCCAAGAGAGTATGCTGAGATATCTTTAAAAGACATTGATCAAGTTGCCAAGAGCTCATTTCCTCTGTGCATGCGTCACCTGTTTGATAAGCTGAAAGAGGACCATCATTTAAAGCACGGTGGAAGGATGCAACTAGGCCTCTTTCTCAAGGGTGTTGGTTTGAACCTTGATGATGCACTTGCGTTTTGGAGAGCCGAGTTCTCTAAAAAGGTTGGTTTGGAGAAGTTTGAGAAAGAATATTCATATAACATCCGCCATAATTATGGAAAGGAAGGGAAGAGAACTGATTATACACCCTATTCCTGTCAAAAGGTTATTTCATCAACTCCTGGTGCTGGAGATCATCATGGTTGCCCCTATCGACATTTCAGTGAAGAGAATCTAAGAGCTGCTCTCAGCAGAATGGGGGTGAACAGTCGAGCCATGGAAGATGTCATGGACAAAGTGCGAAATAGACATTATCAGTTAGCATGTACCTTGACATTTGAAGCTCTTCATGGCGTGCAATGTGATGCAGGGATTAACCATCCAAATCAATATTTCAGTGACAGTCAAAAGATATTGCAGCCAAAGAAGGACTCTTCAGCCTAA

Protein sequence

>Msa0577580

MEVVRPQSHRNLFSSNDAVSAPTIPLYRSAPSLEVKDLWKMNMRHQHASEILNKDIISHFVLRLVEDLRKWFLSMECALFRYRFRFLTTEAQRAIMDEFDLTCKAVNNVEFESIKEKLGQVARSMGQPSPTADAIFYKVPFEEVPELVARRQVFISQGYAYVAMNQVVSLVATLFRSQLSKTLVLTNRKWTSSIREQEKHRLTPIVEALSSSYLGPDFSQPREYAEISLKDIDQVAKSSFPLCMRHLFDKLKEDHHLKHGGRMQLGLFLKGVGLNLDDALAFWRAEFSKKVGLEKFEKEYSYNIRHNYGKEGKRTDYTPYSCQKVISSTPGAGDHHGCPYRHFSEENLRAALSRMGVNSRAMEDVMDKVRNRHYQLACTLTFEALHGVQCDAGINHPNQYFSDSQKILQPKKDSSA*