AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0367520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367520 MtrunA17_Chr3g0108931 95.187 187 9 0 1 187 1 187 6.46e-129 359
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367520 AT3G46940.2 87.943 141 17 0 47 187 67 207 4.94e-87 254
Msa0367520 AT3G46940.1 87.943 141 17 0 47 187 26 166 5.88e-87 253

Find 58 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTGAAGTTTCTGAGGTTT+TGG 0.179108 3_1:+63211340 Msa0367520:CDS
AAGAATGGAGCGGGAAAATT+TGG 0.249765 3_1:+63210740 Msa0367520:five_prime_UTR
CTCAATAATATTCTCAGAAT+TGG 0.270970 3_1:-63211522 None:intergenic
GTTAGAGGTGAAGGTGGTTT+TGG 0.293840 3_1:+63211377 Msa0367520:CDS
TACAGTGAACTGAACAATTA+AGG 0.307992 3_1:-63211573 None:intergenic
GATTTGGATTCTACTGTTAG+AGG 0.343621 3_1:+63211362 Msa0367520:CDS
TTTCTTCACTCGGAGAAAAC+TGG 0.351836 3_1:-63210906 None:intergenic
ATCATATAGGTGTGTGTACT+TGG 0.353101 3_1:+63211456 Msa0367520:three_prime_UTR
ACACGAGCATAGGTTCCTTC+AGG 0.369361 3_1:-63211061 None:intergenic
AACCTTTGAATCGGCGGCGC+TGG 0.374420 3_1:-63210990 None:intergenic
ATTGTTTCTTGTATTAAAAG+TGG 0.384726 3_1:+63211609 Msa0367520:three_prime_UTR
TCAACAATGTCCAACTTAAA+CGG 0.388632 3_1:+63210872 Msa0367520:CDS
CTGATTACAGAGGACCTGTT+GGG 0.415838 3_1:+63211231 Msa0367520:CDS
TCCAAAACCTCAGAAACTTC+AGG 0.420422 3_1:-63211341 None:intergenic
CATTCGATTGACGTTGGTGC+TGG 0.432456 3_1:+63211197 Msa0367520:CDS
GGCGGAGAGAGGAGAGCCGC+GGG 0.455885 3_1:-63210954 None:intergenic
ATGAGAGCTTTGCCGCGAGC+AGG 0.461473 3_1:-63211013 None:intergenic
TGAAACGACGCCGTTTAAGT+TGG 0.465891 3_1:-63210882 None:intergenic
CGCCGAGATCGGGGTTGACA+TGG 0.473074 3_1:+63211171 Msa0367520:CDS
GAAGTGTGAGAGTGTGTTCA+TGG 0.479038 3_1:-63210765 None:intergenic
TTCCATGTCAACCCCGATCT+CGG 0.481839 3_1:-63211173 None:intergenic
AAGAAGTAATTGGAAAAGAA+TGG 0.483929 3_1:+63210725 None:intergenic
TTAAACAGTATAACCCCAAC+AGG 0.497604 3_1:-63211245 None:intergenic
CGCGGCTCTCCTCTCTCCGC+CGG 0.497937 3_1:+63210956 Msa0367520:CDS
GGAAGGTATAACGGCTTTGT+CGG 0.505146 3_1:-63210933 None:intergenic
GATTCTACTGTTAGAGGTGA+AGG 0.505946 3_1:+63211368 Msa0367520:CDS
TGTCGGAGAGTTTCTTCACT+CGG 0.507441 3_1:-63210916 None:intergenic
TCATATAGGTGTGTGTACTT+GGG 0.509297 3_1:+63211457 Msa0367520:three_prime_UTR
CTCCAGCGCCGCCGATTCAA+AGG 0.509909 3_1:+63210988 Msa0367520:CDS
CTCTCCATCGCCGTCCCTGA+AGG 0.513836 3_1:+63211046 Msa0367520:CDS
GGCGCTGGAGAGATCGTATC+CGG 0.519854 3_1:-63210975 None:intergenic
TATTACTCCTGAAGTTTCTG+AGG 0.531575 3_1:+63211334 Msa0367520:CDS
CACGAGCATAGGTTCCTTCA+GGG 0.535140 3_1:-63211060 None:intergenic
GCGAGCAGGAACCTTTGAAT+CGG 0.540643 3_1:-63210999 None:intergenic
AGAGCCGCGGGAAGGTATAA+CGG 0.542038 3_1:-63210942 None:intergenic
CATATAGGTGTGTGTACTTG+GGG 0.549413 3_1:+63211458 Msa0367520:three_prime_UTR
GAACATGATTAAGATATGAA+AGG 0.552604 3_1:+63211658 Msa0367520:three_prime_UTR
ACGGCGATGGAGAGATCTGT+GGG 0.554559 3_1:-63211037 None:intergenic
GGTTCCTTCAGGGACGGCGA+TGG 0.559917 3_1:-63211050 None:intergenic
TCTACTGTTAGAGGTGAAGG+TGG 0.578300 3_1:+63211371 Msa0367520:CDS
GACGGCGATGGAGAGATCTG+TGG 0.578622 3_1:-63211038 None:intergenic
AGCAGGAACCTTTGAATCGG+CGG 0.581168 3_1:-63210996 None:intergenic
AGATCGTATCCGGCGGAGAG+AGG 0.592423 3_1:-63210965 None:intergenic
GTAACTACCAACACGAGCAT+AGG 0.593624 3_1:-63211071 None:intergenic
GAGAGAGGAGAGCCGCGGGA+AGG 0.593764 3_1:-63210950 None:intergenic
TAATTGGAAAAGAATGGAGC+GGG 0.594749 3_1:+63210731 None:intergenic
CGGCGGAGAGAGGAGAGCCG+CGG 0.611864 3_1:-63210955 None:intergenic
GCTGATTACAGAGGACCTGT+TGG 0.614644 3_1:+63211230 Msa0367520:CDS
TGGAAGCATTCGATTGACGT+TGG 0.614719 3_1:+63211191 Msa0367520:CDS
GAAGGAACCTATGCTCGTGT+TGG 0.618409 3_1:+63211064 Msa0367520:CDS
AGCATAGGTTCCTTCAGGGA+CGG 0.629807 3_1:-63211056 None:intergenic
GATTCAAAGGTTCCTGCTCG+CGG 0.632457 3_1:+63211001 Msa0367520:CDS
TGATTACAGAGGACCTGTTG+GGG 0.654205 3_1:+63211232 Msa0367520:CDS
GTAATTGGAAAAGAATGGAG+CGG 0.678157 3_1:+63210730 None:intergenic
AAAGCCGTTATACCTTCCCG+CGG 0.736048 3_1:+63210938 Msa0367520:CDS
GTGATTGATGCTGATTACAG+AGG 0.740502 3_1:+63211221 Msa0367520:CDS
GCTGGAGAGATCGTATCCGG+CGG 0.743244 3_1:-63210972 None:intergenic
CGGCGATGGAGAGATCTGTG+GGG 0.756952 3_1:-63211036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACAGTTTTATAATCATAT+AGG + chr3_1:63211443-63211462 Msa0367520:three_prime_UTR 15.0%
!!! AAACAGTTTTATAATCATAT+AGG + chr3_1:63211443-63211462 Msa0367520:three_prime_UTR 15.0%
!! TAAAATTCAAAATTGGGAAA+GGG - chr3_1:63211104-63211123 None:intergenic 20.0%
!!! TTTCCCAATTTTGAATTTTA+GGG + chr3_1:63211104-63211123 Msa0367520:intron 20.0%
!! AAACCCTAAAATTCAAAATT+GGG - chr3_1:63211110-63211129 None:intergenic 20.0%
!! AAAACCCTAAAATTCAAAAT+TGG - chr3_1:63211111-63211130 None:intergenic 20.0%
!!! ATTTTAGGGTTTTGAAATTT+AGG + chr3_1:63211118-63211137 Msa0367520:intron 20.0%
!!! TTTTAGGGTTTTGAAATTTA+GGG + chr3_1:63211119-63211138 Msa0367520:intron 20.0%
!!! ATTGTTTCTTGTATTAAAAG+TGG + chr3_1:63211609-63211628 Msa0367520:three_prime_UTR 20.0%
!! TAAAATTCAAAATTGGGAAA+GGG - chr3_1:63211104-63211123 None:intergenic 20.0%
!!! TTTCCCAATTTTGAATTTTA+GGG + chr3_1:63211104-63211123 Msa0367520:intron 20.0%
!! AAACCCTAAAATTCAAAATT+GGG - chr3_1:63211110-63211129 None:intergenic 20.0%
!! AAAACCCTAAAATTCAAAAT+TGG - chr3_1:63211111-63211130 None:intergenic 20.0%
!!! ATTTTAGGGTTTTGAAATTT+AGG + chr3_1:63211118-63211137 Msa0367520:intron 20.0%
!!! TTTTAGGGTTTTGAAATTTA+GGG + chr3_1:63211119-63211138 Msa0367520:intron 20.0%
!!! ATTGTTTCTTGTATTAAAAG+TGG + chr3_1:63211609-63211628 Msa0367520:three_prime_UTR 20.0%
! AAAATTCAAAATTGGGAAAG+GGG - chr3_1:63211103-63211122 None:intergenic 25.0%
! CTAAAATTCAAAATTGGGAA+AGG - chr3_1:63211105-63211124 None:intergenic 25.0%
!! CTTTCCCAATTTTGAATTTT+AGG + chr3_1:63211103-63211122 Msa0367520:intron 25.0%
!!! TTTACTATTTTGCTGTGTTA+AGG + chr3_1:63211497-63211516 Msa0367520:three_prime_UTR 25.0%
! CTCAATAATATTCTCAGAAT+TGG - chr3_1:63211525-63211544 None:intergenic 25.0%
! GAACATGATTAAGATATGAA+AGG + chr3_1:63211658-63211677 Msa0367520:three_prime_UTR 25.0%
! TAAGATATGAAAGGATTACT+TGG + chr3_1:63211667-63211686 Msa0367520:three_prime_UTR 25.0%
! AAAATTCAAAATTGGGAAAG+GGG - chr3_1:63211103-63211122 None:intergenic 25.0%
! CTAAAATTCAAAATTGGGAA+AGG - chr3_1:63211105-63211124 None:intergenic 25.0%
!! CTTTCCCAATTTTGAATTTT+AGG + chr3_1:63211103-63211122 Msa0367520:intron 25.0%
!!! TTTACTATTTTGCTGTGTTA+AGG + chr3_1:63211497-63211516 Msa0367520:three_prime_UTR 25.0%
! CTCAATAATATTCTCAGAAT+TGG - chr3_1:63211525-63211544 None:intergenic 25.0%
! GAACATGATTAAGATATGAA+AGG + chr3_1:63211658-63211677 Msa0367520:three_prime_UTR 25.0%
TCAACAATGTCCAACTTAAA+CGG + chr3_1:63210872-63210891 Msa0367520:CDS 30.0%
!!! GTTGATTTTGAAGTGAAAGT+TGG + chr3_1:63211278-63211297 Msa0367520:CDS 30.0%
TACAGTGAACTGAACAATTA+AGG - chr3_1:63211576-63211595 None:intergenic 30.0%
TCAACAATGTCCAACTTAAA+CGG + chr3_1:63210872-63210891 Msa0367520:CDS 30.0%
!!! GTTGATTTTGAAGTGAAAGT+TGG + chr3_1:63211278-63211297 Msa0367520:CDS 30.0%
TACAGTGAACTGAACAATTA+AGG - chr3_1:63211576-63211595 None:intergenic 30.0%
TTAAACAGTATAACCCCAAC+AGG - chr3_1:63211248-63211267 None:intergenic 35.0%
TATTACTCCTGAAGTTTCTG+AGG + chr3_1:63211334-63211353 Msa0367520:CDS 35.0%
!!! AGTTTCTGAGGTTTTGGATT+TGG + chr3_1:63211346-63211365 Msa0367520:CDS 35.0%
GATTTGGATTCTACTGTTAG+AGG + chr3_1:63211362-63211381 Msa0367520:CDS 35.0%
ATCATATAGGTGTGTGTACT+TGG + chr3_1:63211456-63211475 Msa0367520:three_prime_UTR 35.0%
TCATATAGGTGTGTGTACTT+GGG + chr3_1:63211457-63211476 Msa0367520:three_prime_UTR 35.0%
TTAAACAGTATAACCCCAAC+AGG - chr3_1:63211248-63211267 None:intergenic 35.0%
TATTACTCCTGAAGTTTCTG+AGG + chr3_1:63211334-63211353 Msa0367520:CDS 35.0%
!!! AGTTTCTGAGGTTTTGGATT+TGG + chr3_1:63211346-63211365 Msa0367520:CDS 35.0%
GATTTGGATTCTACTGTTAG+AGG + chr3_1:63211362-63211381 Msa0367520:CDS 35.0%
ATCATATAGGTGTGTGTACT+TGG + chr3_1:63211456-63211475 Msa0367520:three_prime_UTR 35.0%
TCATATAGGTGTGTGTACTT+GGG + chr3_1:63211457-63211476 Msa0367520:three_prime_UTR 35.0%
AAGAATGGAGCGGGAAAATT+TGG + chr3_1:63210740-63210759 Msa0367520:five_prime_UTR 40.0%
TTTCTTCACTCGGAGAAAAC+TGG - chr3_1:63210909-63210928 None:intergenic 40.0%
! GTGATTGATGCTGATTACAG+AGG + chr3_1:63211221-63211240 Msa0367520:CDS 40.0%
!!! TCCTGAAGTTTCTGAGGTTT+TGG + chr3_1:63211340-63211359 Msa0367520:CDS 40.0%
TCCAAAACCTCAGAAACTTC+AGG - chr3_1:63211344-63211363 None:intergenic 40.0%
GATTCTACTGTTAGAGGTGA+AGG + chr3_1:63211368-63211387 Msa0367520:CDS 40.0%
!!! AAGGTGGTTTTGGATCTACT+GGG + chr3_1:63211387-63211406 Msa0367520:CDS 40.0%
CATATAGGTGTGTGTACTTG+GGG + chr3_1:63211458-63211477 Msa0367520:three_prime_UTR 40.0%
AAGAATGGAGCGGGAAAATT+TGG + chr3_1:63210740-63210759 Msa0367520:five_prime_UTR 40.0%
TTTCTTCACTCGGAGAAAAC+TGG - chr3_1:63210909-63210928 None:intergenic 40.0%
! GTGATTGATGCTGATTACAG+AGG + chr3_1:63211221-63211240 Msa0367520:CDS 40.0%
!!! TCCTGAAGTTTCTGAGGTTT+TGG + chr3_1:63211340-63211359 Msa0367520:CDS 40.0%
TCCAAAACCTCAGAAACTTC+AGG - chr3_1:63211344-63211363 None:intergenic 40.0%
GATTCTACTGTTAGAGGTGA+AGG + chr3_1:63211368-63211387 Msa0367520:CDS 40.0%
!!! AAGGTGGTTTTGGATCTACT+GGG + chr3_1:63211387-63211406 Msa0367520:CDS 40.0%
CATATAGGTGTGTGTACTTG+GGG + chr3_1:63211458-63211477 Msa0367520:three_prime_UTR 40.0%
! GAAGTGTGAGAGTGTGTTCA+TGG - chr3_1:63210768-63210787 None:intergenic 45.0%
TGAAACGACGCCGTTTAAGT+TGG - chr3_1:63210885-63210904 None:intergenic 45.0%
TGTCGGAGAGTTTCTTCACT+CGG - chr3_1:63210919-63210938 None:intergenic 45.0%
! GGAAGGTATAACGGCTTTGT+CGG - chr3_1:63210936-63210955 None:intergenic 45.0%
GTAACTACCAACACGAGCAT+AGG - chr3_1:63211074-63211093 None:intergenic 45.0%
!! TGGAAGCATTCGATTGACGT+TGG + chr3_1:63211191-63211210 Msa0367520:CDS 45.0%
CTGATTACAGAGGACCTGTT+GGG + chr3_1:63211231-63211250 Msa0367520:CDS 45.0%
TGATTACAGAGGACCTGTTG+GGG + chr3_1:63211232-63211251 Msa0367520:CDS 45.0%
TCTACTGTTAGAGGTGAAGG+TGG + chr3_1:63211371-63211390 Msa0367520:CDS 45.0%
! GTTAGAGGTGAAGGTGGTTT+TGG + chr3_1:63211377-63211396 Msa0367520:CDS 45.0%
!!! GAAGGTGGTTTTGGATCTAC+TGG + chr3_1:63211386-63211405 Msa0367520:CDS 45.0%
!!! AGGTGGTTTTGGATCTACTG+GGG + chr3_1:63211388-63211407 Msa0367520:CDS 45.0%
! GAAGTGTGAGAGTGTGTTCA+TGG - chr3_1:63210768-63210787 None:intergenic 45.0%
TGAAACGACGCCGTTTAAGT+TGG - chr3_1:63210885-63210904 None:intergenic 45.0%
TGTCGGAGAGTTTCTTCACT+CGG - chr3_1:63210919-63210938 None:intergenic 45.0%
! GGAAGGTATAACGGCTTTGT+CGG - chr3_1:63210936-63210955 None:intergenic 45.0%
GTAACTACCAACACGAGCAT+AGG - chr3_1:63211074-63211093 None:intergenic 45.0%
!! TGGAAGCATTCGATTGACGT+TGG + chr3_1:63211191-63211210 Msa0367520:CDS 45.0%
CTGATTACAGAGGACCTGTT+GGG + chr3_1:63211231-63211250 Msa0367520:CDS 45.0%
TGATTACAGAGGACCTGTTG+GGG + chr3_1:63211232-63211251 Msa0367520:CDS 45.0%
TCTACTGTTAGAGGTGAAGG+TGG + chr3_1:63211371-63211390 Msa0367520:CDS 45.0%
! GTTAGAGGTGAAGGTGGTTT+TGG + chr3_1:63211377-63211396 Msa0367520:CDS 45.0%
!!! GAAGGTGGTTTTGGATCTAC+TGG + chr3_1:63211386-63211405 Msa0367520:CDS 45.0%
!!! AGGTGGTTTTGGATCTACTG+GGG + chr3_1:63211388-63211407 Msa0367520:CDS 45.0%
AAAGCCGTTATACCTTCCCG+CGG + chr3_1:63210938-63210957 Msa0367520:CDS 50.0%
AGCAGGAACCTTTGAATCGG+CGG - chr3_1:63210999-63211018 None:intergenic 50.0%
GCGAGCAGGAACCTTTGAAT+CGG - chr3_1:63211002-63211021 None:intergenic 50.0%
GATTCAAAGGTTCCTGCTCG+CGG + chr3_1:63211001-63211020 Msa0367520:CDS 50.0%
AGCATAGGTTCCTTCAGGGA+CGG - chr3_1:63211059-63211078 None:intergenic 50.0%
CACGAGCATAGGTTCCTTCA+GGG - chr3_1:63211063-63211082 None:intergenic 50.0%
ACACGAGCATAGGTTCCTTC+AGG - chr3_1:63211064-63211083 None:intergenic 50.0%
GAAGGAACCTATGCTCGTGT+TGG + chr3_1:63211064-63211083 Msa0367520:CDS 50.0%
!! GATTTTTGCAGCGCCGAGAT+CGG + chr3_1:63211160-63211179 Msa0367520:intron 50.0%
!! ATTTTTGCAGCGCCGAGATC+GGG + chr3_1:63211161-63211180 Msa0367520:intron 50.0%
TTCCATGTCAACCCCGATCT+CGG - chr3_1:63211176-63211195 None:intergenic 50.0%
CATTCGATTGACGTTGGTGC+TGG + chr3_1:63211197-63211216 Msa0367520:CDS 50.0%
GCTGATTACAGAGGACCTGT+TGG + chr3_1:63211230-63211249 Msa0367520:CDS 50.0%
AAAGCCGTTATACCTTCCCG+CGG + chr3_1:63210938-63210957 Msa0367520:CDS 50.0%
AGCAGGAACCTTTGAATCGG+CGG - chr3_1:63210999-63211018 None:intergenic 50.0%
GCGAGCAGGAACCTTTGAAT+CGG - chr3_1:63211002-63211021 None:intergenic 50.0%
GATTCAAAGGTTCCTGCTCG+CGG + chr3_1:63211001-63211020 Msa0367520:CDS 50.0%
AGCATAGGTTCCTTCAGGGA+CGG - chr3_1:63211059-63211078 None:intergenic 50.0%
CACGAGCATAGGTTCCTTCA+GGG - chr3_1:63211063-63211082 None:intergenic 50.0%
ACACGAGCATAGGTTCCTTC+AGG - chr3_1:63211064-63211083 None:intergenic 50.0%
GAAGGAACCTATGCTCGTGT+TGG + chr3_1:63211064-63211083 Msa0367520:CDS 50.0%
!! GATTTTTGCAGCGCCGAGAT+CGG + chr3_1:63211160-63211179 Msa0367520:intron 50.0%
!! ATTTTTGCAGCGCCGAGATC+GGG + chr3_1:63211161-63211180 Msa0367520:intron 50.0%
TTCCATGTCAACCCCGATCT+CGG - chr3_1:63211176-63211195 None:intergenic 50.0%
CATTCGATTGACGTTGGTGC+TGG + chr3_1:63211197-63211216 Msa0367520:CDS 50.0%
GCTGATTACAGAGGACCTGT+TGG + chr3_1:63211230-63211249 Msa0367520:CDS 50.0%
! AGAGCCGCGGGAAGGTATAA+CGG - chr3_1:63210945-63210964 None:intergenic 55.0%
ACGGCGATGGAGAGATCTGT+GGG - chr3_1:63211040-63211059 None:intergenic 55.0%
!! TTTTTGCAGCGCCGAGATCG+GGG + chr3_1:63211162-63211181 Msa0367520:intron 55.0%
! AGAGCCGCGGGAAGGTATAA+CGG - chr3_1:63210945-63210964 None:intergenic 55.0%
ACGGCGATGGAGAGATCTGT+GGG - chr3_1:63211040-63211059 None:intergenic 55.0%
!! TTTTTGCAGCGCCGAGATCG+GGG + chr3_1:63211162-63211181 Msa0367520:intron 55.0%
AGATCGTATCCGGCGGAGAG+AGG - chr3_1:63210968-63210987 None:intergenic 60.0%
GCTGGAGAGATCGTATCCGG+CGG - chr3_1:63210975-63210994 None:intergenic 60.0%
! GGCGCTGGAGAGATCGTATC+CGG - chr3_1:63210978-63210997 None:intergenic 60.0%
AACCTTTGAATCGGCGGCGC+TGG - chr3_1:63210993-63211012 None:intergenic 60.0%
ATGAGAGCTTTGCCGCGAGC+AGG - chr3_1:63211016-63211035 None:intergenic 60.0%
CGGCGATGGAGAGATCTGTG+GGG - chr3_1:63211039-63211058 None:intergenic 60.0%
GACGGCGATGGAGAGATCTG+TGG - chr3_1:63211041-63211060 None:intergenic 60.0%
AGATCGTATCCGGCGGAGAG+AGG - chr3_1:63210968-63210987 None:intergenic 60.0%
GCTGGAGAGATCGTATCCGG+CGG - chr3_1:63210975-63210994 None:intergenic 60.0%
! GGCGCTGGAGAGATCGTATC+CGG - chr3_1:63210978-63210997 None:intergenic 60.0%
AACCTTTGAATCGGCGGCGC+TGG - chr3_1:63210993-63211012 None:intergenic 60.0%
ATGAGAGCTTTGCCGCGAGC+AGG - chr3_1:63211016-63211035 None:intergenic 60.0%
CGGCGATGGAGAGATCTGTG+GGG - chr3_1:63211039-63211058 None:intergenic 60.0%
GACGGCGATGGAGAGATCTG+TGG - chr3_1:63211041-63211060 None:intergenic 60.0%
!! CTCCAGCGCCGCCGATTCAA+AGG + chr3_1:63210988-63211007 Msa0367520:CDS 65.0%
CTCTCCATCGCCGTCCCTGA+AGG + chr3_1:63211046-63211065 Msa0367520:CDS 65.0%
GGTTCCTTCAGGGACGGCGA+TGG - chr3_1:63211053-63211072 None:intergenic 65.0%
CGCCGAGATCGGGGTTGACA+TGG + chr3_1:63211171-63211190 Msa0367520:CDS 65.0%
!! CTCCAGCGCCGCCGATTCAA+AGG + chr3_1:63210988-63211007 Msa0367520:CDS 65.0%
CTCTCCATCGCCGTCCCTGA+AGG + chr3_1:63211046-63211065 Msa0367520:CDS 65.0%
GGTTCCTTCAGGGACGGCGA+TGG - chr3_1:63211053-63211072 None:intergenic 65.0%
CGCCGAGATCGGGGTTGACA+TGG + chr3_1:63211171-63211190 Msa0367520:CDS 65.0%
GAGAGAGGAGAGCCGCGGGA+AGG - chr3_1:63210953-63210972 None:intergenic 70.0%
GAGAGAGGAGAGCCGCGGGA+AGG - chr3_1:63210953-63210972 None:intergenic 70.0%
GGCGGAGAGAGGAGAGCCGC+GGG - chr3_1:63210957-63210976 None:intergenic 75.0%
CGGCGGAGAGAGGAGAGCCG+CGG - chr3_1:63210958-63210977 None:intergenic 75.0%
CGCGGCTCTCCTCTCTCCGC+CGG + chr3_1:63210956-63210975 Msa0367520:CDS 75.0%
GGCGGAGAGAGGAGAGCCGC+GGG - chr3_1:63210957-63210976 None:intergenic 75.0%
CGGCGGAGAGAGGAGAGCCG+CGG - chr3_1:63210958-63210977 None:intergenic 75.0%
CGCGGCTCTCCTCTCTCCGC+CGG + chr3_1:63210956-63210975 Msa0367520:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 63210736 63211687 63210736 ID=Msa0367520;Name=Msa0367520
chr3_1 mRNA 63210736 63211687 63210736 ID=Msa0367520-mRNA-1;Parent=Msa0367520;Name=Msa0367520-mRNA-1;_AED=0.00;_eAED=0.00;_QI=31|1|1|1|1|1|2|272|187
chr3_1 exon 63210736 63211085 63210736 ID=Msa0367520-mRNA-1:exon:12427;Parent=Msa0367520-mRNA-1
chr3_1 exon 63211171 63211687 63211171 ID=Msa0367520-mRNA-1:exon:12428;Parent=Msa0367520-mRNA-1
chr3_1 five_prime_UTR 63210736 63210766 63210736 ID=Msa0367520-mRNA-1:five_prime_utr;Parent=Msa0367520-mRNA-1
chr3_1 CDS 63210767 63211085 63210767 ID=Msa0367520-mRNA-1:cds;Parent=Msa0367520-mRNA-1
chr3_1 CDS 63211171 63211415 63211171 ID=Msa0367520-mRNA-1:cds;Parent=Msa0367520-mRNA-1
chr3_1 three_prime_UTR 63211416 63211687 63211416 ID=Msa0367520-mRNA-1:three_prime_utr;Parent=Msa0367520-mRNA-1
Gene Sequence

>Msa0367520

ATGAACACACTCTCACACTTCTTTTCTCACTTTCTATATAAACAACTCAACTCTCATTTCTCTCTTCACATTCACACACACTTTCAATTTTCGATCTTTCGCTTTTCAACAATGTCCAACTTAAACGGCGTCGTTTCATCCAGTTTTCTCCGAGTGAAGAAACTCTCCGACAAAGCCGTTATACCTTCCCGCGGCTCTCCTCTCTCCGCCGGATACGATCTCTCCAGCGCCGCCGATTCAAAGGTTCCTGCTCGCGGCAAAGCTCTCATCCCCACAGATCTCTCCATCGCCGTCCCTGAAGGAACCTATGCTCGTGTTGCGCCGAGATCGGGGTTGACATGGAAGCATTCGATTGACGTTGGTGCTGGAGTGATTGATGCTGATTACAGAGGACCTGTTGGGGTTATACTGTTTAATCATTCAGATGTTGATTTTGAAGTGAAAGTTGGTGATAGAGTTGCTCAGTTGATTATTGAGAAGATTATTACTCCTGAAGTTTCTGAGGTTTTGGATTTGGATTCTACTGTTAGAGGTGAAGGTGGTTTTGGATCTACTGGGGTTTGA

Protein sequence

>Msa0367520

MNTLSHFFSHFLYKQLNSHFSLHIHTHFQFSIFRFSTMSNLNGVVSSSFLRVKKLSDKAVIPSRGSPLSAGYDLSSAADSKVPARGKALIPTDLSIAVPEGTYARVAPRSGLTWKHSIDVGAGVIDADYRGPVGVILFNHSDVDFEVKVGDRVAQLIIEKIITPEVSEVLDLDSTVRGEGGFGSTGV*