AlfalfaGEDB | Msa0580080

M. sativa cultivar zhongmu-4 / Msa0580080

KEGG: K01184
GO: GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
PFAM: PF00295.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580080	XP_024636446.2	95.000	400	18	1	1	398	1	400	0.0	760

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580080	sp\|P48979\|PGLR_PRUPE	66.583	398	128	2	1	398	1	393	0.0	543

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580080	A0A396I8Y1	95.000	400	18	1	1	398	1	400	0.0	760

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0174100	Msa0580080	0.806526	7.880546e-50	-8.615850e-47
Msa0414050	Msa0580080	0.815629	8.383616e-52	-8.615850e-47
Msa0429840	Msa0580080	0.808397	3.160454e-50	-8.615850e-47
Msa0459150	Msa0580080	0.810415	1.166079e-50	-8.615850e-47
Msa0500910	Msa0580080	0.809565	1.776969e-50	-8.615850e-47
Msa0505640	Msa0580080	0.803090	4.115748e-49	-8.615850e-47
Msa0580080	Msa0610480	0.858764	6.583305e-63	-8.615850e-47
Msa0580080	Msa0642920	0.815255	1.015452e-51	-8.615850e-47
Msa0580080	Msa0651130	0.879902	8.525743e-70	-8.615850e-47
Msa0580080	Msa0662210	0.982950	1.974982e-156	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580080	MtrunA17_Chr4g0043431	95.000	400	18	1	1	398	1	400	0.0	760
Msa0580080	MtrunA17_Chr2g0291841	67.656	337	104	3	65	398	28	362	5.64e-166	469
Msa0580080	MtrunA17_Chr7g0230891	53.985	389	173	3	14	398	14	400	7.22e-153	437
Msa0580080	MtrunA17_Chr2g0303941	52.806	392	180	5	8	398	4	391	2.89e-138	400
Msa0580080	MtrunA17_Chr1g0195221	41.207	381	210	9	28	398	30	406	5.17e-91	280
Msa0580080	MtrunA17_Chr8g0337351	74.850	167	42	0	165	331	1	167	4.08e-88	264
Msa0580080	MtrunA17_Chr1g0173451	43.085	376	203	8	25	397	68	435	1.29e-87	273
Msa0580080	MtrunA17_Chr8g0348981	38.596	399	230	9	10	398	5	398	8.97e-85	263
Msa0580080	MtrunA17_Chr2g0332801	41.129	372	210	8	34	398	60	429	5.08e-84	263
Msa0580080	MtrunA17_Chr8g0365901	40.318	377	205	11	34	398	66	434	8.43e-83	260

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580080	AT3G59850.2	66.216	370	123	2	30	398	64	432	0.0	517
Msa0580080	AT3G59850.1	66.216	370	123	2	30	398	20	388	0.0	515
Msa0580080	AT2G43870.1	62.663	383	139	4	17	398	5	384	1.36e-179	505
Msa0580080	AT1G05660.1	52.713	387	178	4	13	398	10	392	1.57e-148	426
Msa0580080	AT1G05650.1	52.455	387	179	4	13	398	10	392	2.51e-147	423
Msa0580080	AT2G43890.1	50.254	394	191	3	5	398	4	392	2.61e-143	413
Msa0580080	AT2G43860.1	55.409	379	167	2	21	398	21	398	4.22e-141	408
Msa0580080	AT1G65570.1	49.367	395	196	4	7	398	4	397	6.47e-141	407
Msa0580080	AT2G43880.1	50.541	370	181	2	29	398	27	394	2.78e-133	388
Msa0580080	AT2G43880.2	52.013	298	141	2	29	326	27	322	2.51e-106	317

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Find 107 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTATTAAATCAGGCCTC+TGG	0.458353	4_1:-85097589	Msa0580080:intron
AAATTCCTTTACGGCAAAAG+CGG	0.545972	4_1:-85099446	Msa0580080:CDS
AACCATTGATGGCACTTTGG+TGG	0.486786	4_1:-85099230	Msa0580080:CDS
AACTATGGAGCCAAGCCAGA+TGG	0.575309	4_1:-85099400	Msa0580080:CDS
AAGAACCTTATTCCATGTCC+CGG	0.555681	4_1:+85098143	None:intergenic
AATTATTGCCCAAACAACGA+AGG	0.671027	4_1:-85097799	Msa0580080:CDS
AATTCTGGTCAATTACAATT+GGG	0.433868	4_1:+85097818	None:intergenic
AATTGAGATACAATCATCAC+CGG	0.630705	4_1:+85098211	None:intergenic
AATTGCCGCCGGATAAGGCG+AGG	0.666819	4_1:+85099327	None:intergenic
ACAAAATGTGACAGTTAAAA+CGG	0.489424	4_1:-85097953	Msa0580080:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACATTTAGAAATGCCTTTG+TGG	+	chr4_1:85097523-85097542	None:intergenic	30.0%
TAACCGGTAAAAATGGTAAT+TGG	-	chr4_1:85097697-85097716	Msa0580080:intron	30.0%
CTTGTGGGATTGTAAAAATT+CGG	-	chr4_1:85097785-85097804	Msa0580080:intron	30.0%
TGTCTAATTATCTCATGCAT+TGG	-	chr4_1:85097841-85097860	Msa0580080:CDS	30.0%
GTATATAGAAGTTGAAGCAT+GGG	-	chr4_1:85098050-85098069	Msa0580080:intron	30.0%
TATGTCTGATCAATTCGAAT+TGG	+	chr4_1:85098175-85098194	None:intergenic	30.0%
GGAATAGAATGATATAGTGT+AGG	-	chr4_1:85098235-85098254	Msa0580080:CDS	30.0%
TCACGTTCTATTGGAATTAT+TGG	-	chr4_1:85098296-85098315	Msa0580080:CDS	30.0%
TGCCAAAATGTAAAAACACA+AGG	-	chr4_1:85098557-85098576	Msa0580080:intron	30.0%
GCCAAAATGTAAAAACACAA+GGG	-	chr4_1:85098558-85098577	Msa0580080:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	85097378	85099530	85097378	ID=Msa0580080;Name=Msa0580080
chr4_1	mRNA	85097378	85099530	85097378	ID=Msa0580080-mRNA-1;Parent=Msa0580080;Name=Msa0580080-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.33\|0\|1\|1\|1\|4\|0\|398
chr4_1	exon	85099072	85099530	85099072	ID=Msa0580080-mRNA-1:exon:31179;Parent=Msa0580080-mRNA-1
chr4_1	exon	85098149	85098438	85098149	ID=Msa0580080-mRNA-1:exon:31178;Parent=Msa0580080-mRNA-1
chr4_1	exon	85097786	85098014	85097786	ID=Msa0580080-mRNA-1:exon:31177;Parent=Msa0580080-mRNA-1
chr4_1	exon	85097378	85097596	85097378	ID=Msa0580080-mRNA-1:exon:31176;Parent=Msa0580080-mRNA-1
chr4_1	CDS	85099072	85099530	85099072	ID=Msa0580080-mRNA-1:cds;Parent=Msa0580080-mRNA-1
chr4_1	CDS	85098149	85098438	85098149	ID=Msa0580080-mRNA-1:cds;Parent=Msa0580080-mRNA-1
chr4_1	CDS	85097786	85098014	85097786	ID=Msa0580080-mRNA-1:cds;Parent=Msa0580080-mRNA-1
chr4_1	CDS	85097378	85097596	85097378	ID=Msa0580080-mRNA-1:cds;Parent=Msa0580080-mRNA-1

Gene Sequence

>Msa0580080

ATGTCAAAACTTAACAATCTTCTTCCTTTTCTCTTAATCATAATCACATTATCTTGTTACTTAAATTCCTTTACGGCAAAAGCGGCGTCGTCAACATACAATGTAATCAACTATGGAGCCAAGCCAGATGGTAAAACTGATTCCACAAAGGCATTTCTAAATGTATGGTCTAAGGCATGTTCCTCGCCTTATCCGGCGGCAATTTACGTACCACAAGGGAAATTCTTACTTGGAACTGCAACATTTAGTGGAAAATGTATCAACAAAGCTATTTCCATAACCATTGATGGCACTTTGGTGGCTTCATCTAATTACCGTGTAACCGGTAAAAATGGTAATTGGTTGAAGTTTCAGCATGTTGACGGGGTTTCGATCCGCGGCGGTGTGCTTGATGGACAAGGTACTGCCTTGTGGGATTGTAAAAATTCGGACAAAAGTAATTGCCCAACTGGAGCCACGACGCTGGAATTCAGTAGCTCAAAAAATATTATGATTACCGGTTTGACATCGATGAATAGTCAAATGTTCCACATAGCGTTCAATGGATGCCAAAATGTAAAAACACAAGGGGTGAATATCATAGCAGCCGGAAACAGCCCAAACACCGACGGCATCCACGTCCAAATGTCCTCCCAAGTCACCATCCTCAACTCCAAAATTCGAACCGGTGATGATTGTATCTCAATTGGTCCTGGTACAAGTAATTTGTGGATTGAAAACATTGCATGTGGACCGGGACATGGAATAAGTATTGGAAGCTTGGGATGGAAGTTAAATGAACCAGGAGTACAAAATGTGACAGTTAAAACGGTTACATTCACAGGAACTCAAAATGGTGTTAGAATAAAGTCTTGGGGTAGACCTAGCAATGGATTTGTAAGGAACATCTTTTTCCAAGATGCAATCATGGTTAATGTCCAAAACCCAATTGTAATTGACCAGAATTATTGCCCAAACAACGAAGGCTGCCCCGGTCAGGCCTCTGGAATTAAAGTGAGTGGTGTAACATACCAAAACATTCATGGAACATCTGCAACACAAGTAGCTGTGAAATTTGATTGTAGTTCAAAGTATCCATGTAGTGGAATAAAGATGAAGGATGTAAAGCTCACTTACAAAAACCAAGTGGCTGAAGCATCATGTAACCATGCTGGTGGAGCTGCATTGGGTTCAGTTCAGCCAGAGAGTTGCTTATAG

Protein sequence

>Msa0580080

MSKLNNLLPFLLIIITLSCYLNSFTAKAASSTYNVINYGAKPDGKTDSTKAFLNVWSKACSSPYPAAIYVPQGKFLLGTATFSGKCINKAISITIDGTLVASSNYRVTGKNGNWLKFQHVDGVSIRGGVLDGQGTALWDCKNSDKSNCPTGATTLEFSSSKNIMITGLTSMNSQMFHIAFNGCQNVKTQGVNIIAAGNSPNTDGIHVQMSSQVTILNSKIRTGDDCISIGPGTSNLWIENIACGPGHGISIGSLGWKLNEPGVQNVTVKTVTFTGTQNGVRIKSWGRPSNGFVRNIFFQDAIMVNVQNPIVIDQNYCPNNEGCPGQASGIKVSGVTYQNIHGTSATQVAVKFDCSSKYPCSGIKMKDVKLTYKNQVAEASCNHAGGAALGSVQPESCL*