AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0414050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0414050 MtrunA17_Chr3g0106901 94.984 319 13 2 1 316 5 323 0.0 582
Msa0414050 MtrunA17_Chr7g0244461 67.541 305 97 1 14 316 8 312 1.92e-149 422
Msa0414050 MtrunA17_Chr7g0244451 63.810 315 112 1 4 316 2 316 3.33e-142 404
Msa0414050 MtrunA17_Chr3g0129051 60.577 312 119 2 9 316 11 322 3.16e-135 386
Msa0414050 MtrunA17_Chr4g0013201 60.000 295 116 1 24 316 44 338 3.12e-134 384
Msa0414050 MtrunA17_Chr4g0013191 61.873 299 109 3 23 316 42 340 4.54e-134 384
Msa0414050 MtrunA17_Chr3g0114451 59.048 315 125 2 6 316 4 318 5.93e-134 383
Msa0414050 MtrunA17_Chr5g0438021 59.443 323 119 4 3 316 6 325 1.86e-132 379
Msa0414050 MtrunA17_Chr2g0320071 60.129 311 121 2 9 316 7 317 6.53e-131 375
Msa0414050 MtrunA17_Chr3g0129061 61.538 312 113 3 9 316 14 322 9.98e-131 375
Msa0414050 MtrunA17_Chr5g0432441 58.861 316 123 4 8 316 11 326 1.51e-128 369
Msa0414050 MtrunA17_Chr4g0038151 58.385 322 127 4 1 316 1 321 2.20e-128 369
Msa0414050 MtrunA17_Chr2g0320061 59.615 312 122 3 9 316 7 318 7.20e-128 367
Msa0414050 MtrunA17_Chr2g0320101 58.521 311 126 2 9 316 7 317 1.33e-127 367
Msa0414050 MtrunA17_Chr3g0106921 57.742 310 126 3 12 316 11 320 2.25e-127 366
Msa0414050 MtrunA17_Chr4g0043391 58.514 323 125 5 1 316 4 324 9.79e-127 365
Msa0414050 MtrunA17_Chr4g0038171 59.443 323 122 5 1 316 1 321 2.47e-126 363
Msa0414050 MtrunA17_Chr4g0038161 57.143 322 130 4 1 316 1 320 1.25e-125 362
Msa0414050 MtrunA17_Chr1g0213061 57.764 322 129 5 1 316 1 321 1.34e-124 360
Msa0414050 MtrunA17_Chr7g0224371 58.974 312 121 4 11 316 12 322 1.79e-124 359
Msa0414050 MtrunA17_Chr3g0129041 63.973 297 103 2 24 316 26 322 2.71e-124 358
Msa0414050 MtrunA17_Chr2g0320051 58.333 312 126 3 9 316 7 318 6.38e-124 357
Msa0414050 MtrunA17_Chr4g0013171 54.206 321 142 4 1 316 1 321 2.80e-123 356
Msa0414050 MtrunA17_Chr2g0320091 56.731 312 131 3 9 316 7 318 4.93e-121 350
Msa0414050 MtrunA17_Chr2g0320031 55.272 313 135 3 9 316 7 319 7.24e-120 347
Msa0414050 MtrunA17_Chr4g0013181 56.164 292 124 3 29 316 62 353 2.03e-116 340
Msa0414050 MtrunA17_Chr3g0107881 53.704 324 142 5 1 316 1 324 1.60e-115 336
Msa0414050 MtrunA17_Chr5g0432341 51.863 322 144 6 5 316 1 321 2.33e-111 326
Msa0414050 MtrunA17_Chr5g0432331 51.402 321 147 6 4 316 33 352 9.72e-111 325
Msa0414050 MtrunA17_Chr5g0432351 51.899 316 141 6 11 316 7 321 1.98e-110 323
Msa0414050 MtrunA17_Chr5g0404721 48.837 301 144 3 26 316 30 330 3.23e-101 300
Msa0414050 MtrunA17_Chr1g0175561 48.125 320 151 5 9 316 10 326 1.55e-100 298
Msa0414050 MtrunA17_Chr4g0068621 50.502 299 140 3 26 316 38 336 1.80e-100 298
Msa0414050 MtrunA17_Chr8g0372601 48.505 301 145 3 26 316 30 330 5.78e-100 297
Msa0414050 MtrunA17_Chr5g0402571 47.988 323 156 5 4 316 6 326 1.38e-99 296
Msa0414050 MtrunA17_Chr4g0070951 45.921 331 162 5 1 316 1 329 3.09e-99 295
Msa0414050 MtrunA17_Chr2g0299691 47.988 323 149 5 11 316 38 358 6.12e-97 290
Msa0414050 MtrunA17_Chr5g0402581 47.368 323 158 5 4 316 6 326 6.48e-97 289
Msa0414050 MtrunA17_Chr7g0258811 43.865 326 171 4 3 316 46 371 1.53e-93 282
Msa0414050 MtrunA17_Chr5g0400331 48.710 310 142 4 23 316 23 331 9.05e-93 279
Msa0414050 MtrunA17_Chr1g0155611 47.020 302 149 3 26 316 46 347 2.40e-92 278
Msa0414050 MtrunA17_Chr2g0292251 47.039 304 150 3 24 316 26 329 3.86e-92 278
Msa0414050 MtrunA17_Chr2g0292211 45.625 320 162 4 9 316 22 341 6.08e-91 275
Msa0414050 MtrunA17_Chr2g0292091 45.066 304 156 3 24 316 22 325 1.02e-90 274
Msa0414050 MtrunA17_Chr2g0292181 46.053 304 153 3 24 316 36 339 6.70e-90 272
Msa0414050 MtrunA17_Chr2g0291751 45.079 315 161 4 14 316 16 330 3.13e-89 270
Msa0414050 MtrunA17_Chr2g0292151 45.574 305 155 3 23 316 26 330 6.35e-89 270
Msa0414050 MtrunA17_Chr2g0292111 45.246 305 156 3 23 316 26 330 3.02e-88 268
Msa0414050 MtrunA17_Chr2g0292271 43.438 320 167 4 11 316 11 330 3.69e-88 268
Msa0414050 MtrunA17_Chr4g0013721 46.535 303 150 4 23 316 97 396 3.93e-87 267
Msa0414050 MtrunA17_Chr2g0292241 45.574 305 155 3 23 316 26 330 7.57e-87 264
Msa0414050 MtrunA17_Chr5g0432401 44.904 314 126 6 9 315 12 285 1.93e-86 261
Msa0414050 MtrunA17_Chr4g0013821 43.218 317 168 4 9 316 11 324 8.06e-86 261
Msa0414050 MtrunA17_Chr1g0188431 43.671 316 165 7 9 316 17 327 4.24e-84 256
Msa0414050 MtrunA17_Chr5g0421411 46.667 285 135 7 47 316 3 285 4.94e-84 254
Msa0414050 MtrunA17_Chr2g0292101 43.421 304 161 3 24 316 23 326 8.93e-83 253
Msa0414050 MtrunA17_Chr2g0292261 43.607 305 161 3 23 316 26 330 3.33e-82 252
Msa0414050 MtrunA17_Chr2g0292291 42.810 306 163 4 23 316 27 332 4.55e-82 252
Msa0414050 MtrunA17_Chr6g0477071 42.761 297 162 6 23 316 51 342 1.05e-78 243
Msa0414050 MtrunA17_Chr1g0204011 40.127 314 175 5 12 316 13 322 1.34e-77 239
Msa0414050 MtrunA17_Chr2g0279041 41.538 325 170 8 7 316 6 325 1.34e-76 237
Msa0414050 MtrunA17_Chr3g0128061 41.250 320 177 4 8 316 7 326 2.34e-76 236
Msa0414050 MtrunA17_Chr2g0322861 40.312 320 178 6 8 316 69 386 1.41e-75 236
Msa0414050 MtrunA17_Chr1g0164891 44.000 300 155 6 30 316 93 392 3.93e-75 236
Msa0414050 MtrunA17_Chr7g0254201 41.311 305 167 5 19 316 13 312 5.74e-75 233
Msa0414050 MtrunA17_Chr4g0024121 37.461 323 191 4 4 316 5 326 1.90e-74 231
Msa0414050 MtrunA17_Chr7g0268501 39.441 322 181 6 5 316 3 320 1.66e-73 229
Msa0414050 MtrunA17_Chr7g0268521 39.441 322 181 6 5 316 3 320 1.66e-73 229
Msa0414050 MtrunA17_Chr4g0063671 40.752 319 170 6 12 316 7 320 6.08e-73 228
Msa0414050 MtrunA17_Chr7g0225221 39.355 310 181 4 13 316 12 320 1.61e-72 226
Msa0414050 MtrunA17_Chr8g0371381 43.046 302 153 8 26 316 26 319 1.68e-72 226
Msa0414050 MtrunA17_Chr1g0194151 41.515 330 175 5 5 316 4 333 3.68e-72 226
Msa0414050 MtrunA17_Chr1g0157051 39.873 316 176 5 9 315 7 317 4.98e-71 223
Msa0414050 MtrunA17_Chr1g0197411 38.957 326 187 5 3 316 5 330 7.31e-71 223
Msa0414050 MtrunA17_Chr6g0460711 39.048 315 176 7 9 316 9 314 3.67e-70 220
Msa0414050 MtrunA17_Chr5g0405991 40.752 319 166 10 12 316 7 316 4.44e-70 220
Msa0414050 MtrunA17_Chr1g0194271 42.675 314 160 5 23 316 27 340 9.08e-70 220
Msa0414050 MtrunA17_Chr7g0254231 40.541 296 165 6 26 316 22 311 1.28e-69 219
Msa0414050 MtrunA17_Chr8g0364291 37.963 324 189 5 5 316 1 324 5.70e-67 213
Msa0414050 MtrunA17_Chr4g0076211 40.878 296 157 7 31 316 46 333 1.05e-66 212
Msa0414050 MtrunA17_Chr2g0296621 40.532 301 160 8 26 316 50 341 1.07e-66 212
Msa0414050 MtrunA17_Chr3g0114461 51.596 188 90 1 130 316 5 192 1.15e-65 204
Msa0414050 MtrunA17_Chr6g0467161 38.344 326 180 9 7 316 16 336 1.61e-65 209
Msa0414050 MtrunA17_Chr2g0316791 37.764 331 164 8 26 315 76 405 2.31e-65 211
Msa0414050 MtrunA17_Chr2g0316481 38.369 331 162 7 26 315 76 405 2.93e-65 211
Msa0414050 MtrunA17_Chr6g0451571 38.558 319 184 5 9 316 17 334 3.66e-65 208
Msa0414050 MtrunA17_Chr6g0467251 39.726 292 168 6 26 312 36 324 2.31e-64 206
Msa0414050 MtrunA17_Chr2g0316831 37.462 331 165 7 26 315 112 441 9.35e-64 207
Msa0414050 MtrunA17_Chr2g0316191 37.349 332 165 7 26 315 76 406 2.13e-63 206
Msa0414050 MtrunA17_Chr2g0278671 39.414 307 169 6 23 316 21 323 7.47e-63 202
Msa0414050 MtrunA17_Chr2g0311251 37.764 331 163 8 26 315 11 339 2.96e-61 198
Msa0414050 MtrunA17_Chr5g0401431 35.873 315 190 4 10 312 11 325 8.13e-61 197
Msa0414050 MtrunA17_Chr4g0046131 36.228 334 189 8 3 312 9 342 6.04e-60 195
Msa0414050 MtrunA17_Chr3g0136751 36.562 320 187 5 9 316 7 322 8.16e-60 194
Msa0414050 MtrunA17_Chr2g0311241 34.225 374 162 8 24 315 58 429 3.60e-59 195
Msa0414050 MtrunA17_Chr2g0329641 34.911 338 190 8 4 316 3 335 8.17e-59 192
Msa0414050 MtrunA17_Chr4g0053871 35.535 318 194 5 6 312 3 320 3.12e-58 190
Msa0414050 MtrunA17_Chr1g0148021 35.826 321 189 7 12 316 9 328 4.63e-58 189
Msa0414050 MtrunA17_Chr5g0413051 36.977 311 176 8 23 316 70 377 9.60e-58 190
Msa0414050 MtrunA17_Chr2g0279061 41.860 258 134 5 70 316 14 266 9.93e-58 187
Msa0414050 MtrunA17_Chr4g0075241 35.000 300 187 3 25 316 28 327 1.42e-57 188
Msa0414050 MtrunA17_Chr1g0181431 33.667 300 191 4 24 316 25 323 2.65e-54 180
Msa0414050 MtrunA17_Chr6g0467121 35.811 296 179 7 26 316 74 363 4.76e-54 181
Msa0414050 MtrunA17_Chr4g0072091 34.868 304 183 6 25 316 23 323 5.54e-54 179
Msa0414050 MtrunA17_Chr1g0181511 34.098 305 185 5 23 316 24 323 1.15e-52 176
Msa0414050 MtrunA17_Chr1g0181481 33.223 301 193 4 23 316 24 323 4.68e-52 174
Msa0414050 MtrunA17_Chr4g0074851 33.438 320 194 7 10 312 7 324 8.52e-51 171
Msa0414050 MtrunA17_Chr4g0004591 33.438 317 146 5 26 315 77 355 3.49e-50 170
Msa0414050 MtrunA17_Chr3g0114491 68.182 110 33 1 25 132 17 126 1.40e-47 156
Msa0414050 MtrunA17_Chr2g0316141 36.900 271 148 6 67 315 8 277 6.37e-46 157
Msa0414050 MtrunA17_Chr2g0316181 36.900 271 148 6 67 315 8 277 6.37e-46 157
Msa0414050 MtrunA17_Chr2g0292281 37.619 210 112 4 116 316 17 216 1.36e-42 147
Msa0414050 MtrunA17_Chr2g0316811 37.553 237 120 6 26 236 50 284 1.25e-41 147
Msa0414050 MtrunA17_Chr5g0432321 47.863 117 60 1 145 261 17 132 9.59e-33 118
Msa0414050 MtrunA17_Chr5g0432361 45.133 113 54 3 205 315 2 108 1.93e-25 98.2
Msa0414050 MtrunA17_Chr3g0104101 40.141 142 71 5 188 316 9 149 1.15e-23 94.7
Msa0414050 MtrunA17_Chr7g0254181 45.714 105 53 2 86 190 22 122 1.23e-21 89.4
Msa0414050 MtrunA17_Chr6g0468731 67.143 70 17 3 65 132 22 87 9.53e-21 85.1
Msa0414050 MtrunA17_Chr1g0181501 28.723 188 128 3 134 316 3 189 2.45e-20 87.0
Msa0414050 MtrunA17_Chr3g0137751 30.078 256 114 9 58 297 106 312 4.51e-19 86.3
Msa0414050 MtrunA17_Chr2g0316771 30.168 179 88 3 171 312 4 182 4.12e-18 80.9
Msa0414050 MtrunA17_Chr1g0181491 38.182 110 64 3 24 131 10 117 1.47e-16 75.5
Msa0414050 MtrunA17_Chr4g0013811 44.595 74 41 0 135 208 6 79 5.24e-16 72.0
Msa0414050 MtrunA17_Chr1g0196191 55.714 70 30 1 62 131 23 91 4.17e-15 71.6
Msa0414050 MtrunA17_Chr3g0124821 26.984 252 153 7 60 298 121 354 1.14e-13 70.9
Msa0414050 MtrunA17_Chr7g0254171 41.892 74 42 1 68 141 2 74 5.38e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0414050 AT5G05340.1 62.333 300 109 2 21 316 25 324 1.15e-133 383
Msa0414050 AT5G58400.1 56.550 313 129 5 11 316 13 325 1.31e-118 344
Msa0414050 AT5G58390.1 54.633 313 137 3 9 316 4 316 2.66e-115 336
Msa0414050 AT1G14550.1 52.351 319 144 5 6 316 3 321 2.37e-112 328
Msa0414050 AT1G14540.1 51.935 310 145 3 11 316 6 315 4.52e-109 320
Msa0414050 AT5G06720.1 48.896 317 151 3 11 316 17 333 2.91e-105 311
Msa0414050 AT4G36430.1 46.865 303 151 3 24 316 28 330 1.87e-101 301
Msa0414050 AT2G18150.1 47.138 297 147 3 30 316 40 336 8.28e-101 300
Msa0414050 AT2G18140.1 46.844 301 150 3 26 316 35 335 1.37e-99 296
Msa0414050 AT5G06730.1 45.652 322 160 4 10 316 13 334 1.75e-96 289
Msa0414050 AT5G66390.1 47.176 301 149 3 26 316 33 333 3.25e-96 288
Msa0414050 AT3G50990.1 47.195 303 150 3 24 316 39 341 4.62e-96 288
Msa0414050 AT1G44970.1 48.344 302 145 3 26 316 45 346 2.93e-95 286
Msa0414050 AT4G08770.1 45.659 311 156 4 19 316 17 327 9.80e-94 282
Msa0414050 AT4G16270.1 50.842 297 134 5 30 316 54 348 1.04e-93 282
Msa0414050 AT5G19890.1 50.482 311 133 9 20 316 24 327 9.55e-93 279
Msa0414050 AT4G08780.1 44.695 311 159 4 19 316 17 327 3.49e-92 278
Msa0414050 AT2G38380.1 47.059 306 150 4 23 316 28 333 7.86e-92 277
Msa0414050 AT1G49570.1 47.195 303 148 4 22 312 44 346 1.75e-91 276
Msa0414050 AT2G38390.1 45.752 306 154 4 23 316 28 333 1.08e-89 272
Msa0414050 AT3G32980.1 44.479 317 161 6 13 316 20 334 2.03e-89 271
Msa0414050 AT1G68850.1 42.810 306 160 5 26 316 30 335 1.03e-88 269
Msa0414050 AT3G49110.1 43.871 310 161 5 20 316 27 336 1.18e-87 267
Msa0414050 AT3G49120.1 43.849 317 163 6 13 316 21 335 2.76e-87 266
Msa0414050 AT2G35380.1 47.682 302 143 4 30 316 34 335 3.34e-87 265
Msa0414050 AT2G22420.1 44.514 319 162 7 8 316 6 319 1.34e-86 263
Msa0414050 AT5G19880.1 44.654 318 160 5 13 316 14 329 5.70e-83 254
Msa0414050 AT4G33420.1 45.578 294 152 6 26 316 37 325 3.26e-80 247
Msa0414050 AT4G33420.2 45.578 294 152 6 26 316 84 372 2.01e-79 246
Msa0414050 AT5G64120.1 43.390 295 154 5 30 316 39 328 6.23e-77 238
Msa0414050 AT5G17820.1 42.357 314 162 6 12 316 10 313 1.17e-76 237
Msa0414050 AT5G15180.1 40.000 330 180 7 2 316 3 329 3.83e-76 236
Msa0414050 AT5G17820.2 42.357 314 162 6 12 316 63 366 5.59e-76 237
Msa0414050 AT5G51890.1 41.379 319 168 8 12 316 9 322 5.17e-75 233
Msa0414050 AT1G05260.1 40.063 317 175 7 11 316 13 325 5.96e-75 233
Msa0414050 AT4G11290.1 39.062 320 182 6 9 316 8 326 6.50e-75 233
Msa0414050 AT3G03670.1 40.994 322 179 4 5 316 1 321 7.57e-75 233
Msa0414050 AT1G05240.1 40.594 303 165 6 22 312 22 321 1.53e-74 232
Msa0414050 AT1G05250.1 40.594 303 165 6 22 312 22 321 1.53e-74 232
Msa0414050 AT3G01190.1 42.089 316 167 8 11 316 12 321 1.60e-74 232
Msa0414050 AT5G40150.1 42.667 300 166 4 23 316 29 328 3.14e-74 231
Msa0414050 AT1G71695.1 42.282 298 163 6 26 316 44 339 3.59e-74 232
Msa0414050 AT2G41480.1 40.432 324 174 6 7 316 10 328 2.24e-73 229
Msa0414050 AT5G42180.1 39.564 321 179 6 5 315 1 316 4.98e-72 226
Msa0414050 AT3G21770.1 40.129 309 172 6 15 312 18 324 5.49e-72 226
Msa0414050 AT5G14130.1 38.365 318 182 6 10 316 16 330 6.51e-72 226
Msa0414050 AT5G14130.2 38.365 318 182 6 10 316 57 371 2.01e-71 226
Msa0414050 AT3G28200.1 40.803 299 172 4 23 316 18 316 4.73e-71 223
Msa0414050 AT4G33870.1 37.237 333 164 5 26 314 68 399 1.39e-69 222
Msa0414050 AT4G26010.1 40.385 312 173 8 9 316 7 309 2.89e-69 218
Msa0414050 AT4G26010.2 40.385 312 173 8 9 316 35 337 4.35e-69 219
Msa0414050 AT5G39580.1 41.195 318 169 7 12 316 7 319 1.60e-68 216
Msa0414050 AT5G47000.1 38.720 328 188 7 1 316 4 330 1.15e-66 212
Msa0414050 AT2G35380.2 46.311 244 118 3 86 316 4 247 8.74e-66 207
Msa0414050 AT1G34510.1 38.387 310 181 7 10 316 7 309 1.08e-65 209
Msa0414050 AT4G17690.1 39.088 307 179 5 17 316 17 322 2.46e-64 206
Msa0414050 AT1G77100.1 40.566 318 173 10 11 316 6 319 4.32e-64 205
Msa0414050 AT4G37530.1 37.255 306 180 4 19 312 20 325 1.56e-63 204
Msa0414050 AT2G18980.1 38.486 317 177 5 13 316 12 323 1.82e-63 204
Msa0414050 AT4G31760.1 38.558 319 181 4 9 316 12 326 2.83e-63 203
Msa0414050 AT1G30870.1 39.145 304 163 8 26 316 51 345 4.77e-63 203
Msa0414050 AT4G30170.1 37.987 308 173 7 22 316 23 325 2.93e-61 198
Msa0414050 AT4G25980.1 36.102 313 182 7 18 316 18 326 3.72e-59 192
Msa0414050 AT5G67400.1 35.897 312 188 4 13 312 14 325 4.59e-59 192
Msa0414050 AT1G24110.1 36.250 320 189 6 11 316 4 322 1.45e-58 191
Msa0414050 AT5G64110.1 40.000 300 160 7 30 316 38 330 8.37e-58 189
Msa0414050 AT4G37520.1 36.877 301 178 5 24 312 25 325 9.88e-58 189
Msa0414050 AT2G34060.1 35.224 335 187 8 8 313 10 343 1.40e-57 189
Msa0414050 AT3G49960.1 35.256 312 190 4 13 312 14 325 7.99e-57 187
Msa0414050 AT4G37520.2 36.545 301 176 6 24 312 25 322 7.15e-56 184
Msa0414050 AT2G24800.1 38.019 313 162 7 24 316 29 329 1.06e-55 184
Msa0414050 AT2G39040.1 36.774 310 178 8 23 316 43 350 5.34e-55 182
Msa0414050 AT5G64100.1 36.418 335 180 10 7 316 5 331 1.05e-54 181
Msa0414050 AT3G17070.1 37.377 305 174 8 26 316 38 339 1.19e-54 181
Msa0414050 AT4G37530.2 38.462 260 148 4 19 266 20 279 2.34e-54 179
Msa0414050 AT5G22410.1 34.796 319 187 10 9 313 11 322 2.07e-52 175
Msa0414050 AT2G37130.1 34.416 308 193 5 17 316 21 327 6.05e-52 174
Msa0414050 AT2G37130.2 35.135 296 183 5 29 316 2 296 2.89e-51 171
Msa0414050 AT4G21960.1 34.114 299 187 6 26 316 31 327 1.10e-50 171
Msa0414050 AT2G43480.1 35.065 308 178 8 25 316 34 335 3.19e-49 167
Msa0414050 AT5G24070.1 33.333 297 178 7 34 316 45 335 1.46e-45 158
Msa0414050 AT3G17070.2 36.154 260 154 5 68 316 18 276 5.49e-44 152
Msa0414050 AT5G39580.2 42.009 219 112 6 12 224 7 216 2.93e-42 146
Msa0414050 AT4G25980.2 42.045 176 96 4 18 191 63 234 8.87e-39 139
Msa0414050 AT2G24800.2 44.643 168 87 3 24 189 29 192 9.65e-35 127
Msa0414050 AT4G32320.1 29.183 257 117 8 57 297 114 321 3.99e-17 81.3
Msa0414050 AT3G42570.1 40.206 97 57 1 96 191 53 149 5.25e-16 74.3
Msa0414050 AT1G07890.6 28.634 227 122 7 80 302 59 249 1.55e-13 69.7
Msa0414050 AT1G77490.1 26.587 252 154 7 60 298 106 339 1.60e-13 71.2
Msa0414050 AT1G77490.2 26.587 252 154 7 60 298 106 339 1.70e-13 71.2
Msa0414050 AT1G07890.2 28.700 223 119 7 80 298 59 245 2.40e-13 69.3
Msa0414050 AT1G07890.8 28.700 223 119 7 80 298 59 245 2.40e-13 69.3
Msa0414050 AT1G07890.4 28.700 223 119 7 80 298 59 245 2.40e-13 69.3
Msa0414050 AT1G07890.7 28.700 223 119 7 80 298 59 245 2.40e-13 69.3
Msa0414050 AT1G07890.1 28.700 223 119 7 80 298 59 245 2.40e-13 69.3
Msa0414050 AT1G07890.3 28.700 223 119 7 80 298 59 245 2.40e-13 69.3
Msa0414050 AT1G07890.5 28.700 223 119 7 80 298 59 245 2.40e-13 69.3

Find 64 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCCGTTATTTCCAGTTAA+AGG 0.185895 3_2:-58987046 None:intergenic
TGCTAGTGCTATGGTGAAAA+TGG 0.207916 3_2:+58987012 Msa0414050:CDS
TTTATAATAGAAAGGGCTTT+AGG 0.216313 3_2:-58984789 None:intergenic
AAAGAGATGGTTGTCCTTTC+AGG 0.221896 3_2:+58986392 Msa0414050:CDS
CAATTATCGTCAGATTTCTA+TGG 0.295287 3_2:+58984756 Msa0414050:CDS
TGATATTCCATCCCCTCTTA+TGG 0.297430 3_2:+58986322 Msa0414050:CDS
TTATAATAGAAAGGGCTTTA+GGG 0.351671 3_2:-58984788 None:intergenic
TGACAACATTAAAACTCAAT+TGG 0.351916 3_2:+58985723 Msa0414050:CDS
GGAAATCTCAGCCCTTTAAC+TGG 0.358869 3_2:+58987034 Msa0414050:CDS
GGCCGTTATTTCCAGTTAAA+GGG 0.365786 3_2:-58987045 None:intergenic
CAATTGACACCTGGCTTGTC+CGG 0.396982 3_2:-58986726 None:intergenic
TGCGGCAATTAGTACGAATC+TGG 0.400407 3_2:-58987066 None:intergenic
TGAAAGGACAACCATCTCTT+TGG 0.409369 3_2:-58986390 None:intergenic
CCAACATGGAGTGTTGGATT+AGG 0.409859 3_2:+58986257 Msa0414050:CDS
AGTTGAAGGACTTGTGCTAT+AGG 0.433383 3_2:-58986975 None:intergenic
CAACGATTTAGTTAACTTTG+CGG 0.433402 3_2:-58987084 None:intergenic
TTGCTATCACCACCTGTACT+TGG 0.442974 3_2:-58986818 None:intergenic
CTGCAGTGTTTATAATAGAA+AGG 0.449549 3_2:-58984797 None:intergenic
GTGCATTGACAAAGCAATCA+TGG 0.468415 3_2:-58984878 None:intergenic
TGCATAGGTGCTCATACAAC+CGG 0.472398 3_2:+58986707 Msa0414050:intron
AGCTTGAAGTGTCATCTAAT+AGG 0.475347 3_2:-58985642 None:intergenic
TGCAGTGTTTATAATAGAAA+GGG 0.475406 3_2:-58984796 None:intergenic
TGATTGTCTCGTTATAAATC+CGG 0.475695 3_2:-58986757 None:intergenic
TGCACCAGCCGACTTCTCTC+CGG 0.478100 3_2:-58985668 None:intergenic
CAAAGCAATCATGGAAATGA+AGG 0.492608 3_2:-58984869 None:intergenic
AAATCTGTATAGAAAGTTGA+AGG 0.493293 3_2:-58986989 None:intergenic
GCTAGTGCTATGGTGAAAAT+GGG 0.496755 3_2:+58987013 Msa0414050:CDS
AGGTCACTAAGATCCATAAG+AGG 0.497849 3_2:-58986335 None:intergenic
GGCAGTATCTTTACTAGCAG+TGG 0.501994 3_2:-58986294 None:intergenic
ACAAGAACGAAAACAACATA+AGG 0.505361 3_2:-58984719 None:intergenic
AGCCCTTTAACTGGAAATAA+CGG 0.505540 3_2:+58987043 Msa0414050:CDS
CAATTGGAAACTGCTTGTCC+TGG 0.510442 3_2:+58985739 Msa0414050:CDS
CTCAGTTGGGTGGTCCAACA+TGG 0.519896 3_2:+58986243 Msa0414050:intron
AAATCAAACTGTCCAAGTAC+AGG 0.528486 3_2:+58986806 Msa0414050:CDS
GGTGTCAATTGTTCAGAGGC+CGG 0.528795 3_2:+58986738 Msa0414050:CDS
CTCATACAACCGGACAAGCC+AGG 0.537911 3_2:+58986717 Msa0414050:CDS
AGGGGATGGAATATCATTAG+TGG 0.539253 3_2:-58986315 None:intergenic
CTAAGATCCATAAGAGGGGA+TGG 0.539670 3_2:-58986329 None:intergenic
AATTTACTATCTCAGTTGGG+TGG 0.542773 3_2:+58986233 Msa0414050:intron
GATGACACTTCAAGCTTCAC+CGG 0.544535 3_2:+58985649 Msa0414050:CDS
GAAATATGAGGTTACCTGAA+AGG 0.547360 3_2:-58986406 None:intergenic
AGCATTGTCAAATAATACAT+TGG 0.550023 3_2:-58986864 None:intergenic
GGTGGTCCAACATGGAGTGT+TGG 0.550979 3_2:+58986251 Msa0414050:CDS
AAGGACAACCATCTCTTTGG+TGG 0.552824 3_2:-58986387 None:intergenic
GGGATTTACCACCAAAGAGA+TGG 0.564115 3_2:+58986379 Msa0414050:CDS
GCCTCTGAACAATTGACACC+TGG 0.564734 3_2:-58986735 None:intergenic
CGATAATTGAGCAGAGACCA+TGG 0.570929 3_2:-58984742 None:intergenic
AAGCTTCACCGGAGAGAAGT+CGG 0.573162 3_2:+58985660 Msa0414050:CDS
TTCACCGGAGAGAAGTCGGC+TGG 0.575709 3_2:+58985664 Msa0414050:CDS
TCAGCACAAGAAACAACTCC+AGG 0.586737 3_2:-58985757 None:intergenic
GGTCACTAAGATCCATAAGA+GGG 0.589820 3_2:-58986334 None:intergenic
GCAAATTTAAATTCTCTCAG+AGG 0.592563 3_2:+58985688 Msa0414050:CDS
TGTTTCTAAAGAACATCGCA+TGG 0.595897 3_2:+58984830 Msa0414050:CDS
CCTAATCCAACACTCCATGT+TGG 0.600465 3_2:-58986257 None:intergenic
GATCAACAACTCTTCAGTGG+TGG 0.610710 3_2:+58986929 Msa0414050:CDS
TTGTGACATCAAGTGAGGTA+AGG 0.618359 3_2:-58986841 None:intergenic
TGCTCGTGATGCTGTTGTAG+CGG 0.635557 3_2:+58985795 Msa0414050:CDS
GCCAGGTGTCAATTGTTCAG+AGG 0.643723 3_2:+58986734 Msa0414050:CDS
TCTGATCAACAACTCTTCAG+TGG 0.652175 3_2:+58986926 Msa0414050:CDS
TCAAACTGTCCAAGTACAGG+TGG 0.661430 3_2:+58986809 Msa0414050:CDS
GTTTCTAAAGAACATCGCAT+GGG 0.661595 3_2:+58984831 Msa0414050:CDS
ATTGGTTGTGACATCAAGTG+AGG 0.672598 3_2:-58986846 None:intergenic
AGCAATCATGGAAATGAAGG+CGG 0.675421 3_2:-58984866 None:intergenic
GTCACTAAGATCCATAAGAG+GGG 0.687769 3_2:-58986333 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCCTATTTTATTTTTTA+GGG - chr3_2:58985060-58985079 None:intergenic 10.0%
!!! AATATCCTATTTTATTTTTT+AGG - chr3_2:58985061-58985080 None:intergenic 10.0%
!!! AAAATTTTTGGTTTTATATT+TGG + chr3_2:58985093-58985112 Msa0414050:intron 10.0%
!!! ATATATTTAATTTATCATCT+AGG - chr3_2:58985363-58985382 None:intergenic 10.0%
!! TTAATTAATTAAGAAATATG+AGG - chr3_2:58986421-58986440 None:intergenic 10.0%
!!! ATATCCTATTTTATTTTTTA+GGG - chr3_2:58985060-58985079 None:intergenic 10.0%
!!! AATATCCTATTTTATTTTTT+AGG - chr3_2:58985061-58985080 None:intergenic 10.0%
!!! AAAATTTTTGGTTTTATATT+TGG + chr3_2:58985093-58985112 Msa0414050:intron 10.0%
!!! ATATATTTAATTTATCATCT+AGG - chr3_2:58985363-58985382 None:intergenic 10.0%
!! TTAATTAATTAAGAAATATG+AGG - chr3_2:58986421-58986440 None:intergenic 10.0%
!! TCAAAATTCACTATATTTAT+CGG - chr3_2:58985030-58985049 None:intergenic 15.0%
!! CATTAATATGAACATAAATT+AGG - chr3_2:58985128-58985147 None:intergenic 15.0%
!!! GAACTTTTTTTTTTGTTAAT+AGG + chr3_2:58985966-58985985 Msa0414050:intron 15.0%
!! ATTTAACAAATTGAAATATG+TGG - chr3_2:58986022-58986041 None:intergenic 15.0%
!! TAATCATATATAAAACCTTA+AGG - chr3_2:58986178-58986197 None:intergenic 15.0%
!! AAAAACTTGATCTTAATTAT+GGG - chr3_2:58986449-58986468 None:intergenic 15.0%
!! TAAAAACTTGATCTTAATTA+TGG - chr3_2:58986450-58986469 None:intergenic 15.0%
!!! AAGATCAAGTTTTTAATATA+AGG + chr3_2:58986455-58986474 Msa0414050:intron 15.0%
!! TCAAAATTCACTATATTTAT+CGG - chr3_2:58985030-58985049 None:intergenic 15.0%
!! CATTAATATGAACATAAATT+AGG - chr3_2:58985128-58985147 None:intergenic 15.0%
!!! GAACTTTTTTTTTTGTTAAT+AGG + chr3_2:58985966-58985985 Msa0414050:intron 15.0%
!! ATTTAACAAATTGAAATATG+TGG - chr3_2:58986022-58986041 None:intergenic 15.0%
!! TAATCATATATAAAACCTTA+AGG - chr3_2:58986178-58986197 None:intergenic 15.0%
!! AAAAACTTGATCTTAATTAT+GGG - chr3_2:58986449-58986468 None:intergenic 15.0%
!! TAAAAACTTGATCTTAATTA+TGG - chr3_2:58986450-58986469 None:intergenic 15.0%
!!! AAGATCAAGTTTTTAATATA+AGG + chr3_2:58986455-58986474 Msa0414050:intron 15.0%
!!! ATAAAACCAAAAATTTTGTG+AGG - chr3_2:58985090-58985109 None:intergenic 20.0%
!! ATAAAACGAAAAATGTTATG+AGG + chr3_2:58985281-58985300 Msa0414050:intron 20.0%
!!! ACATTAAGTCCTTTTAAATA+GGG + chr3_2:58985860-58985879 Msa0414050:intron 20.0%
!! AAAACTTGATCTTAATTATG+GGG - chr3_2:58986448-58986467 None:intergenic 20.0%
!! TATCATTACTCTCAATAAAA+AGG - chr3_2:58986629-58986648 None:intergenic 20.0%
!! ATGATATTTGTACAACTATT+TGG + chr3_2:58986643-58986662 Msa0414050:intron 20.0%
!!! GATTTTTTGTTTTGAAAACT+TGG + chr3_2:58986683-58986702 Msa0414050:intron 20.0%
!! AAGAATCTAGTAAACAAAAA+AGG + chr3_2:58986893-58986912 Msa0414050:CDS 20.0%
!!! ATAAAACCAAAAATTTTGTG+AGG - chr3_2:58985090-58985109 None:intergenic 20.0%
!! ATAAAACGAAAAATGTTATG+AGG + chr3_2:58985281-58985300 Msa0414050:intron 20.0%
!!! ACATTAAGTCCTTTTAAATA+GGG + chr3_2:58985860-58985879 Msa0414050:intron 20.0%
!! AAAACTTGATCTTAATTATG+GGG - chr3_2:58986448-58986467 None:intergenic 20.0%
!! TATCATTACTCTCAATAAAA+AGG - chr3_2:58986629-58986648 None:intergenic 20.0%
!! ATGATATTTGTACAACTATT+TGG + chr3_2:58986643-58986662 Msa0414050:intron 20.0%
!!! GATTTTTTGTTTTGAAAACT+TGG + chr3_2:58986683-58986702 Msa0414050:intron 20.0%
!! AAGAATCTAGTAAACAAAAA+AGG + chr3_2:58986893-58986912 Msa0414050:CDS 20.0%
! ACAACATAAGGAAGAAAAAT+AGG - chr3_2:58984710-58984729 None:intergenic 25.0%
! TTATAATAGAAAGGGCTTTA+GGG - chr3_2:58984791-58984810 None:intergenic 25.0%
! TTTATAATAGAAAGGGCTTT+AGG - chr3_2:58984792-58984811 None:intergenic 25.0%
! TGCAGTGTTTATAATAGAAA+GGG - chr3_2:58984799-58984818 None:intergenic 25.0%
! TCGTCCCTAAAAAATAAAAT+AGG + chr3_2:58985053-58985072 Msa0414050:intron 25.0%
!! TTTCATCCTCACAAAATTTT+TGG + chr3_2:58985081-58985100 Msa0414050:intron 25.0%
! TGAACATAAATTAGGCATTA+AGG - chr3_2:58985120-58985139 None:intergenic 25.0%
!! CGCATCAAACTTTTATATTA+CGG + chr3_2:58985457-58985476 Msa0414050:intron 25.0%
!!! ATGATGATTTTATAACTTGC+AGG + chr3_2:58985603-58985622 Msa0414050:intron 25.0%
!!! TGATGATTTTATAACTTGCA+GGG + chr3_2:58985604-58985623 Msa0414050:intron 25.0%
! TGACAACATTAAAACTCAAT+TGG + chr3_2:58985723-58985742 Msa0414050:CDS 25.0%
!!! TTTTCTTTTAAAGAGTCTGA+CGG + chr3_2:58985827-58985846 Msa0414050:intron 25.0%
!! CACATTAAGTCCTTTTAAAT+AGG + chr3_2:58985859-58985878 Msa0414050:intron 25.0%
! ACTGTAATTCCCTATTTAAA+AGG - chr3_2:58985872-58985891 None:intergenic 25.0%
! CAAGGATATTTGATATGTTA+GGG - chr3_2:58985907-58985926 None:intergenic 25.0%
! ATTCACTATAGTACTAAGAT+TGG + chr3_2:58986091-58986110 Msa0414050:intron 25.0%
! GTCAAAAAATTCAAACCTTA+AGG + chr3_2:58986160-58986179 Msa0414050:intron 25.0%
! CACAAAATGTTAGTTAAAGT+TGG - chr3_2:58986208-58986227 None:intergenic 25.0%
! TTCAATTTACTATCTCAGTT+GGG + chr3_2:58986230-58986249 Msa0414050:intron 25.0%
!!! ATATCTGCTTTTTCAAACAA+GGG + chr3_2:58986359-58986378 Msa0414050:CDS 25.0%
! AGCATTGTCAAATAATACAT+TGG - chr3_2:58986867-58986886 None:intergenic 25.0%
! AAATCTGTATAGAAAGTTGA+AGG - chr3_2:58986992-58987011 None:intergenic 25.0%
! ACAACATAAGGAAGAAAAAT+AGG - chr3_2:58984710-58984729 None:intergenic 25.0%
! TTATAATAGAAAGGGCTTTA+GGG - chr3_2:58984791-58984810 None:intergenic 25.0%
! TTTATAATAGAAAGGGCTTT+AGG - chr3_2:58984792-58984811 None:intergenic 25.0%
! TGCAGTGTTTATAATAGAAA+GGG - chr3_2:58984799-58984818 None:intergenic 25.0%
! TCGTCCCTAAAAAATAAAAT+AGG + chr3_2:58985053-58985072 Msa0414050:intron 25.0%
!! TTTCATCCTCACAAAATTTT+TGG + chr3_2:58985081-58985100 Msa0414050:intron 25.0%
! TGAACATAAATTAGGCATTA+AGG - chr3_2:58985120-58985139 None:intergenic 25.0%
!! CGCATCAAACTTTTATATTA+CGG + chr3_2:58985457-58985476 Msa0414050:intron 25.0%
!!! ATGATGATTTTATAACTTGC+AGG + chr3_2:58985603-58985622 Msa0414050:intron 25.0%
!!! TGATGATTTTATAACTTGCA+GGG + chr3_2:58985604-58985623 Msa0414050:intron 25.0%
! TGACAACATTAAAACTCAAT+TGG + chr3_2:58985723-58985742 Msa0414050:CDS 25.0%
!!! TTTTCTTTTAAAGAGTCTGA+CGG + chr3_2:58985827-58985846 Msa0414050:intron 25.0%
!! CACATTAAGTCCTTTTAAAT+AGG + chr3_2:58985859-58985878 Msa0414050:intron 25.0%
! ACTGTAATTCCCTATTTAAA+AGG - chr3_2:58985872-58985891 None:intergenic 25.0%
! CAAGGATATTTGATATGTTA+GGG - chr3_2:58985907-58985926 None:intergenic 25.0%
! ATTCACTATAGTACTAAGAT+TGG + chr3_2:58986091-58986110 Msa0414050:intron 25.0%
! GTCAAAAAATTCAAACCTTA+AGG + chr3_2:58986160-58986179 Msa0414050:intron 25.0%
! CACAAAATGTTAGTTAAAGT+TGG - chr3_2:58986208-58986227 None:intergenic 25.0%
! TTCAATTTACTATCTCAGTT+GGG + chr3_2:58986230-58986249 Msa0414050:intron 25.0%
!!! ATATCTGCTTTTTCAAACAA+GGG + chr3_2:58986359-58986378 Msa0414050:CDS 25.0%
! AGCATTGTCAAATAATACAT+TGG - chr3_2:58986867-58986886 None:intergenic 25.0%
! AAATCTGTATAGAAAGTTGA+AGG - chr3_2:58986992-58987011 None:intergenic 25.0%
ACAAGAACGAAAACAACATA+AGG - chr3_2:58984722-58984741 None:intergenic 30.0%
CAATTATCGTCAGATTTCTA+TGG + chr3_2:58984756-58984775 Msa0414050:CDS 30.0%
CTGCAGTGTTTATAATAGAA+AGG - chr3_2:58984800-58984819 None:intergenic 30.0%
AAGTTTGATGCGTAACTATT+AGG - chr3_2:58985449-58985468 None:intergenic 30.0%
GCAAATTTAAATTCTCTCAG+AGG + chr3_2:58985688-58985707 Msa0414050:CDS 30.0%
GCAAGGATATTTGATATGTT+AGG - chr3_2:58985908-58985927 None:intergenic 30.0%
GTTCAATTTACTATCTCAGT+TGG + chr3_2:58986229-58986248 Msa0414050:intron 30.0%
TGTTTGAAAAAGCAGATATG+AGG - chr3_2:58986358-58986377 None:intergenic 30.0%
!!! CATATCTGCTTTTTCAAACA+AGG + chr3_2:58986358-58986377 Msa0414050:CDS 30.0%
TGATGTTTCATCTTGAATTG+CGG + chr3_2:58986596-58986615 Msa0414050:intron 30.0%
!! TTTTGAAAACTTGGATGCAT+AGG + chr3_2:58986692-58986711 Msa0414050:intron 30.0%
TGATTGTCTCGTTATAAATC+CGG - chr3_2:58986760-58986779 None:intergenic 30.0%
ACAAGAACGAAAACAACATA+AGG - chr3_2:58984722-58984741 None:intergenic 30.0%
CAATTATCGTCAGATTTCTA+TGG + chr3_2:58984756-58984775 Msa0414050:CDS 30.0%
CTGCAGTGTTTATAATAGAA+AGG - chr3_2:58984800-58984819 None:intergenic 30.0%
AAGTTTGATGCGTAACTATT+AGG - chr3_2:58985449-58985468 None:intergenic 30.0%
GCAAATTTAAATTCTCTCAG+AGG + chr3_2:58985688-58985707 Msa0414050:CDS 30.0%
GCAAGGATATTTGATATGTT+AGG - chr3_2:58985908-58985927 None:intergenic 30.0%
GTTCAATTTACTATCTCAGT+TGG + chr3_2:58986229-58986248 Msa0414050:intron 30.0%
TGTTTGAAAAAGCAGATATG+AGG - chr3_2:58986358-58986377 None:intergenic 30.0%
!!! CATATCTGCTTTTTCAAACA+AGG + chr3_2:58986358-58986377 Msa0414050:CDS 30.0%
TGATGTTTCATCTTGAATTG+CGG + chr3_2:58986596-58986615 Msa0414050:intron 30.0%
!! TTTTGAAAACTTGGATGCAT+AGG + chr3_2:58986692-58986711 Msa0414050:intron 30.0%
TGATTGTCTCGTTATAAATC+CGG - chr3_2:58986760-58986779 None:intergenic 30.0%
! TGTTTCTAAAGAACATCGCA+TGG + chr3_2:58984830-58984849 Msa0414050:CDS 35.0%
! GTTTCTAAAGAACATCGCAT+GGG + chr3_2:58984831-58984850 Msa0414050:CDS 35.0%
CAAAGCAATCATGGAAATGA+AGG - chr3_2:58984872-58984891 None:intergenic 35.0%
! AGCTTGAAGTGTCATCTAAT+AGG - chr3_2:58985645-58985664 None:intergenic 35.0%
AGATGGCAATAGATATTGCA+AGG - chr3_2:58985925-58985944 None:intergenic 35.0%
TTCCATAAGTACAACTCAGA+TGG - chr3_2:58985942-58985961 None:intergenic 35.0%
ATACCTGTAAATAGCACTCT+AGG + chr3_2:58986118-58986137 Msa0414050:intron 35.0%
AATTTACTATCTCAGTTGGG+TGG + chr3_2:58986233-58986252 Msa0414050:intron 35.0%
GAAATATGAGGTTACCTGAA+AGG - chr3_2:58986409-58986428 None:intergenic 35.0%
CAGAGAATTGCAATCAAATG+TGG + chr3_2:58986512-58986531 Msa0414050:intron 35.0%
TTGCAAACGTAGTTACAATG+CGG + chr3_2:58986552-58986571 Msa0414050:intron 35.0%
AAATCAAACTGTCCAAGTAC+AGG + chr3_2:58986806-58986825 Msa0414050:CDS 35.0%
! TACAGATTTTGCTAGTGCTA+TGG + chr3_2:58987003-58987022 Msa0414050:CDS 35.0%
AGCCCTTTAACTGGAAATAA+CGG + chr3_2:58987043-58987062 Msa0414050:CDS 35.0%
! TGTTTCTAAAGAACATCGCA+TGG + chr3_2:58984830-58984849 Msa0414050:CDS 35.0%
! GTTTCTAAAGAACATCGCAT+GGG + chr3_2:58984831-58984850 Msa0414050:CDS 35.0%
CAAAGCAATCATGGAAATGA+AGG - chr3_2:58984872-58984891 None:intergenic 35.0%
! AGCTTGAAGTGTCATCTAAT+AGG - chr3_2:58985645-58985664 None:intergenic 35.0%
AGATGGCAATAGATATTGCA+AGG - chr3_2:58985925-58985944 None:intergenic 35.0%
TTCCATAAGTACAACTCAGA+TGG - chr3_2:58985942-58985961 None:intergenic 35.0%
ATACCTGTAAATAGCACTCT+AGG + chr3_2:58986118-58986137 Msa0414050:intron 35.0%
AATTTACTATCTCAGTTGGG+TGG + chr3_2:58986233-58986252 Msa0414050:intron 35.0%
GAAATATGAGGTTACCTGAA+AGG - chr3_2:58986409-58986428 None:intergenic 35.0%
CAGAGAATTGCAATCAAATG+TGG + chr3_2:58986512-58986531 Msa0414050:intron 35.0%
TTGCAAACGTAGTTACAATG+CGG + chr3_2:58986552-58986571 Msa0414050:intron 35.0%
AAATCAAACTGTCCAAGTAC+AGG + chr3_2:58986806-58986825 Msa0414050:CDS 35.0%
! TACAGATTTTGCTAGTGCTA+TGG + chr3_2:58987003-58987022 Msa0414050:CDS 35.0%
AGCCCTTTAACTGGAAATAA+CGG + chr3_2:58987043-58987062 Msa0414050:CDS 35.0%
!! GTTGTTTTCGTTCTTGTCCA+TGG + chr3_2:58984725-58984744 Msa0414050:CDS 40.0%
AGCAATCATGGAAATGAAGG+CGG - chr3_2:58984869-58984888 None:intergenic 40.0%
! GTGCATTGACAAAGCAATCA+TGG - chr3_2:58984881-58984900 None:intergenic 40.0%
CACACATGAATGTTCATGCA+AGG - chr3_2:58985339-58985358 None:intergenic 40.0%
AGGGAATTACAGTCTCAAAC+CGG + chr3_2:58985879-58985898 Msa0414050:intron 40.0%
TATTTGATATGTTAGGGCGC+CGG - chr3_2:58985901-58985920 None:intergenic 40.0%
TGCCATCTGAGTTGTACTTA+TGG + chr3_2:58985937-58985956 Msa0414050:intron 40.0%
!! CAACCTAGAGTGCTATTTAC+AGG - chr3_2:58986124-58986143 None:intergenic 40.0%
AGGGGATGGAATATCATTAG+TGG - chr3_2:58986318-58986337 None:intergenic 40.0%
TGATATTCCATCCCCTCTTA+TGG + chr3_2:58986322-58986341 Msa0414050:CDS 40.0%
GTCACTAAGATCCATAAGAG+GGG - chr3_2:58986336-58986355 None:intergenic 40.0%
GGTCACTAAGATCCATAAGA+GGG - chr3_2:58986337-58986356 None:intergenic 40.0%
AGGTCACTAAGATCCATAAG+AGG - chr3_2:58986338-58986357 None:intergenic 40.0%
TGAAAGGACAACCATCTCTT+TGG - chr3_2:58986393-58986412 None:intergenic 40.0%
AAAGAGATGGTTGTCCTTTC+AGG + chr3_2:58986392-58986411 Msa0414050:CDS 40.0%
TTGCAATGCGACTACAATTG+AGG - chr3_2:58986538-58986557 None:intergenic 40.0%
TTGTGACATCAAGTGAGGTA+AGG - chr3_2:58986844-58986863 None:intergenic 40.0%
ATTGGTTGTGACATCAAGTG+AGG - chr3_2:58986849-58986868 None:intergenic 40.0%
TCTGATCAACAACTCTTCAG+TGG + chr3_2:58986926-58986945 Msa0414050:CDS 40.0%
AGTTGAAGGACTTGTGCTAT+AGG - chr3_2:58986978-58986997 None:intergenic 40.0%
TGCTAGTGCTATGGTGAAAA+TGG + chr3_2:58987012-58987031 Msa0414050:CDS 40.0%
GCTAGTGCTATGGTGAAAAT+GGG + chr3_2:58987013-58987032 Msa0414050:CDS 40.0%
! GGCCGTTATTTCCAGTTAAA+GGG - chr3_2:58987048-58987067 None:intergenic 40.0%
! TGGCCGTTATTTCCAGTTAA+AGG - chr3_2:58987049-58987068 None:intergenic 40.0%
!! GTTGTTTTCGTTCTTGTCCA+TGG + chr3_2:58984725-58984744 Msa0414050:CDS 40.0%
AGCAATCATGGAAATGAAGG+CGG - chr3_2:58984869-58984888 None:intergenic 40.0%
! GTGCATTGACAAAGCAATCA+TGG - chr3_2:58984881-58984900 None:intergenic 40.0%
CACACATGAATGTTCATGCA+AGG - chr3_2:58985339-58985358 None:intergenic 40.0%
AGGGAATTACAGTCTCAAAC+CGG + chr3_2:58985879-58985898 Msa0414050:intron 40.0%
TATTTGATATGTTAGGGCGC+CGG - chr3_2:58985901-58985920 None:intergenic 40.0%
TGCCATCTGAGTTGTACTTA+TGG + chr3_2:58985937-58985956 Msa0414050:intron 40.0%
!! CAACCTAGAGTGCTATTTAC+AGG - chr3_2:58986124-58986143 None:intergenic 40.0%
AGGGGATGGAATATCATTAG+TGG - chr3_2:58986318-58986337 None:intergenic 40.0%
TGATATTCCATCCCCTCTTA+TGG + chr3_2:58986322-58986341 Msa0414050:CDS 40.0%
GTCACTAAGATCCATAAGAG+GGG - chr3_2:58986336-58986355 None:intergenic 40.0%
GGTCACTAAGATCCATAAGA+GGG - chr3_2:58986337-58986356 None:intergenic 40.0%
AGGTCACTAAGATCCATAAG+AGG - chr3_2:58986338-58986357 None:intergenic 40.0%
TGAAAGGACAACCATCTCTT+TGG - chr3_2:58986393-58986412 None:intergenic 40.0%
AAAGAGATGGTTGTCCTTTC+AGG + chr3_2:58986392-58986411 Msa0414050:CDS 40.0%
TTGCAATGCGACTACAATTG+AGG - chr3_2:58986538-58986557 None:intergenic 40.0%
TTGTGACATCAAGTGAGGTA+AGG - chr3_2:58986844-58986863 None:intergenic 40.0%
ATTGGTTGTGACATCAAGTG+AGG - chr3_2:58986849-58986868 None:intergenic 40.0%
TCTGATCAACAACTCTTCAG+TGG + chr3_2:58986926-58986945 Msa0414050:CDS 40.0%
AGTTGAAGGACTTGTGCTAT+AGG - chr3_2:58986978-58986997 None:intergenic 40.0%
TGCTAGTGCTATGGTGAAAA+TGG + chr3_2:58987012-58987031 Msa0414050:CDS 40.0%
GCTAGTGCTATGGTGAAAAT+GGG + chr3_2:58987013-58987032 Msa0414050:CDS 40.0%
! GGCCGTTATTTCCAGTTAAA+GGG - chr3_2:58987048-58987067 None:intergenic 40.0%
! TGGCCGTTATTTCCAGTTAA+AGG - chr3_2:58987049-58987068 None:intergenic 40.0%
CGATAATTGAGCAGAGACCA+TGG - chr3_2:58984745-58984764 None:intergenic 45.0%
GCAGTTTGCAGCTACAATTG+TGG - chr3_2:58985558-58985577 None:intergenic 45.0%
GATGACACTTCAAGCTTCAC+CGG + chr3_2:58985649-58985668 Msa0414050:CDS 45.0%
CAATTGGAAACTGCTTGTCC+TGG + chr3_2:58985739-58985758 Msa0414050:CDS 45.0%
TCAGCACAAGAAACAACTCC+AGG - chr3_2:58985760-58985779 None:intergenic 45.0%
CCTAATCCAACACTCCATGT+TGG - chr3_2:58986260-58986279 None:intergenic 45.0%
!! CCAACATGGAGTGTTGGATT+AGG + chr3_2:58986257-58986276 Msa0414050:CDS 45.0%
GGCAGTATCTTTACTAGCAG+TGG - chr3_2:58986297-58986316 None:intergenic 45.0%
CTAAGATCCATAAGAGGGGA+TGG - chr3_2:58986332-58986351 None:intergenic 45.0%
GGGATTTACCACCAAAGAGA+TGG + chr3_2:58986379-58986398 Msa0414050:CDS 45.0%
AAGGACAACCATCTCTTTGG+TGG - chr3_2:58986390-58986409 None:intergenic 45.0%
AGTGTTTGTTTCGCGATCCT+AGG + chr3_2:58986485-58986504 Msa0414050:intron 45.0%
TGCATAGGTGCTCATACAAC+CGG + chr3_2:58986707-58986726 Msa0414050:intron 45.0%
TCAAACTGTCCAAGTACAGG+TGG + chr3_2:58986809-58986828 Msa0414050:CDS 45.0%
TTGCTATCACCACCTGTACT+TGG - chr3_2:58986821-58986840 None:intergenic 45.0%
GATCAACAACTCTTCAGTGG+TGG + chr3_2:58986929-58986948 Msa0414050:CDS 45.0%
GGAAATCTCAGCCCTTTAAC+TGG + chr3_2:58987034-58987053 Msa0414050:CDS 45.0%
TGCGGCAATTAGTACGAATC+TGG - chr3_2:58987069-58987088 None:intergenic 45.0%
CGATAATTGAGCAGAGACCA+TGG - chr3_2:58984745-58984764 None:intergenic 45.0%
GCAGTTTGCAGCTACAATTG+TGG - chr3_2:58985558-58985577 None:intergenic 45.0%
GATGACACTTCAAGCTTCAC+CGG + chr3_2:58985649-58985668 Msa0414050:CDS 45.0%
CAATTGGAAACTGCTTGTCC+TGG + chr3_2:58985739-58985758 Msa0414050:CDS 45.0%
TCAGCACAAGAAACAACTCC+AGG - chr3_2:58985760-58985779 None:intergenic 45.0%
CCTAATCCAACACTCCATGT+TGG - chr3_2:58986260-58986279 None:intergenic 45.0%
!! CCAACATGGAGTGTTGGATT+AGG + chr3_2:58986257-58986276 Msa0414050:CDS 45.0%
GGCAGTATCTTTACTAGCAG+TGG - chr3_2:58986297-58986316 None:intergenic 45.0%
CTAAGATCCATAAGAGGGGA+TGG - chr3_2:58986332-58986351 None:intergenic 45.0%
GGGATTTACCACCAAAGAGA+TGG + chr3_2:58986379-58986398 Msa0414050:CDS 45.0%
AAGGACAACCATCTCTTTGG+TGG - chr3_2:58986390-58986409 None:intergenic 45.0%
AGTGTTTGTTTCGCGATCCT+AGG + chr3_2:58986485-58986504 Msa0414050:intron 45.0%
TGCATAGGTGCTCATACAAC+CGG + chr3_2:58986707-58986726 Msa0414050:intron 45.0%
TCAAACTGTCCAAGTACAGG+TGG + chr3_2:58986809-58986828 Msa0414050:CDS 45.0%
TTGCTATCACCACCTGTACT+TGG - chr3_2:58986821-58986840 None:intergenic 45.0%
GATCAACAACTCTTCAGTGG+TGG + chr3_2:58986929-58986948 Msa0414050:CDS 45.0%
GGAAATCTCAGCCCTTTAAC+TGG + chr3_2:58987034-58987053 Msa0414050:CDS 45.0%
TGCGGCAATTAGTACGAATC+TGG - chr3_2:58987069-58987088 None:intergenic 45.0%
GACAAATGCAGCTGCAGTTG+CGG + chr3_2:58985489-58985508 Msa0414050:intron 50.0%
AAGCTTCACCGGAGAGAAGT+CGG + chr3_2:58985660-58985679 Msa0414050:CDS 50.0%
TGCTCGTGATGCTGTTGTAG+CGG + chr3_2:58985795-58985814 Msa0414050:CDS 50.0%
TTGCAATTCTCTGCGAGCCT+AGG - chr3_2:58986505-58986524 None:intergenic 50.0%
! CAATTGACACCTGGCTTGTC+CGG - chr3_2:58986729-58986748 None:intergenic 50.0%
GCCAGGTGTCAATTGTTCAG+AGG + chr3_2:58986734-58986753 Msa0414050:CDS 50.0%
GCCTCTGAACAATTGACACC+TGG - chr3_2:58986738-58986757 None:intergenic 50.0%
GGTGTCAATTGTTCAGAGGC+CGG + chr3_2:58986738-58986757 Msa0414050:CDS 50.0%
GACAAATGCAGCTGCAGTTG+CGG + chr3_2:58985489-58985508 Msa0414050:intron 50.0%
AAGCTTCACCGGAGAGAAGT+CGG + chr3_2:58985660-58985679 Msa0414050:CDS 50.0%
TGCTCGTGATGCTGTTGTAG+CGG + chr3_2:58985795-58985814 Msa0414050:CDS 50.0%
TTGCAATTCTCTGCGAGCCT+AGG - chr3_2:58986505-58986524 None:intergenic 50.0%
! CAATTGACACCTGGCTTGTC+CGG - chr3_2:58986729-58986748 None:intergenic 50.0%
GCCAGGTGTCAATTGTTCAG+AGG + chr3_2:58986734-58986753 Msa0414050:CDS 50.0%
GCCTCTGAACAATTGACACC+TGG - chr3_2:58986738-58986757 None:intergenic 50.0%
GGTGTCAATTGTTCAGAGGC+CGG + chr3_2:58986738-58986757 Msa0414050:CDS 50.0%
ATGCAGCTGCAGTTGCGGTT+AGG + chr3_2:58985494-58985513 Msa0414050:intron 55.0%
CTCAGTTGGGTGGTCCAACA+TGG + chr3_2:58986243-58986262 Msa0414050:intron 55.0%
GGTGGTCCAACATGGAGTGT+TGG + chr3_2:58986251-58986270 Msa0414050:CDS 55.0%
CTCATACAACCGGACAAGCC+AGG + chr3_2:58986717-58986736 Msa0414050:CDS 55.0%
ATGCAGCTGCAGTTGCGGTT+AGG + chr3_2:58985494-58985513 Msa0414050:intron 55.0%
CTCAGTTGGGTGGTCCAACA+TGG + chr3_2:58986243-58986262 Msa0414050:intron 55.0%
GGTGGTCCAACATGGAGTGT+TGG + chr3_2:58986251-58986270 Msa0414050:CDS 55.0%
CTCATACAACCGGACAAGCC+AGG + chr3_2:58986717-58986736 Msa0414050:CDS 55.0%
TTCACCGGAGAGAAGTCGGC+TGG + chr3_2:58985664-58985683 Msa0414050:CDS 60.0%
! TGCACCAGCCGACTTCTCTC+CGG - chr3_2:58985671-58985690 None:intergenic 60.0%
TTCACCGGAGAGAAGTCGGC+TGG + chr3_2:58985664-58985683 Msa0414050:CDS 60.0%
! TGCACCAGCCGACTTCTCTC+CGG - chr3_2:58985671-58985690 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 58984684 58987099 58984684 ID=Msa0414050;Name=Msa0414050
chr3_2 mRNA 58984684 58987099 58984684 ID=Msa0414050-mRNA-1;Parent=Msa0414050;Name=Msa0414050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|4|0|316
chr3_2 exon 58984684 58984890 58984684 ID=Msa0414050-mRNA-1:exon:12233;Parent=Msa0414050-mRNA-1
chr3_2 exon 58985625 58985816 58985625 ID=Msa0414050-mRNA-1:exon:12234;Parent=Msa0414050-mRNA-1
chr3_2 exon 58986248 58986413 58986248 ID=Msa0414050-mRNA-1:exon:12235;Parent=Msa0414050-mRNA-1
chr3_2 exon 58986714 58987099 58986714 ID=Msa0414050-mRNA-1:exon:12236;Parent=Msa0414050-mRNA-1
chr3_2 CDS 58984684 58984890 58984684 ID=Msa0414050-mRNA-1:cds;Parent=Msa0414050-mRNA-1
chr3_2 CDS 58985625 58985816 58985625 ID=Msa0414050-mRNA-1:cds;Parent=Msa0414050-mRNA-1
chr3_2 CDS 58986248 58986413 58986248 ID=Msa0414050-mRNA-1:cds;Parent=Msa0414050-mRNA-1
chr3_2 CDS 58986714 58987099 58986714 ID=Msa0414050-mRNA-1:cds;Parent=Msa0414050-mRNA-1
Gene Sequence

>Msa0414050

ATGGCTTTCAACATGCATTATAACCTATTTTTCTTCCTTATGTTGTTTTCGTTCTTGTCCATGGTCTCTGCTCAATTATCGTCAGATTTCTATGGAACAACTTGCCCTAAAGCCCTTTCTATTATAAACACTGCAGTGTGCAGTGCTGTTTCTAAAGAACATCGCATGGGTGCTTCATTGCTCCGCCTTCATTTCCATGATTGCTTTGGATGTGATGCATCAGTCCTATTAGATGACACTTCAAGCTTCACCGGAGAGAAGTCGGCTGGTGCAAATTTAAATTCTCTCAGAGGTTTTGATGTGATTGACAACATTAAAACTCAATTGGAAACTGCTTGTCCTGGAGTTGTTTCTTGTGCTGATATTGTTGCAGCTGCTGCTCGTGATGCTGTTGTAGCGTTGGGTGGTCCAACATGGAGTGTTGGATTAGGTAGAAGAGATTCAACCACTGCTAGTAAAGATACTGCCACTAATGATATTCCATCCCCTCTTATGGATCTTAGTGACCTCATATCTGCTTTTTCAAACAAGGGATTTACCACCAAAGAGATGGTTGTCCTTTCAGGTGCTCATACAACCGGACAAGCCAGGTGTCAATTGTTCAGAGGCCGGATTTATAACGAGACAATCATTGACTCAAATTTTGCAACTTCAGTGAAATCAAACTGTCCAAGTACAGGTGGTGATAGCAACCTTACCTCACTTGATGTCACAACCAATGTATTATTTGACAATGCTTATTTCAAGAATCTAGTAAACAAAAAAGGACTTTTACATTCTGATCAACAACTCTTCAGTGGTGGTTCTACTGACTCTCAAGTCACTACCTATAGCACAAGTCCTTCAACTTTCTATACAGATTTTGCTAGTGCTATGGTGAAAATGGGAAATCTCAGCCCTTTAACTGGAAATAACGGCCAGATTCGTACTAATTGCCGCAAAGTTAACTAA
Protein sequence

>Msa0414050

MAFNMHYNLFFFLMLFSFLSMVSAQLSSDFYGTTCPKALSIINTAVCSAVSKEHRMGASLLRLHFHDCFGCDASVLLDDTSSFTGEKSAGANLNSLRGFDVIDNIKTQLETACPGVVSCADIVAAAARDAVVALGGPTWSVGLGRRDSTTASKDTATNDIPSPLMDLSDLISAFSNKGFTTKEMVVLSGAHTTGQARCQLFRGRIYNETIIDSNFATSVKSNCPSTGGDSNLTSLDVTTNVLFDNAYFKNLVNKKGLLHSDQQLFSGGSTDSQVTTYSTSPSTFYTDFASAMVKMGNLSPLTGNNGQIRTNCRKVN*