AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0500910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500910 MtrunA17_Chr3g0133581 96.667 150 5 0 1 150 1 150 4.35e-108 304
Msa0500910 MtrunA17_Chr4g0045304 46.610 118 63 0 33 150 81 198 3.61e-35 121
Msa0500910 MtrunA17_Chr4g0045311 46.610 118 63 0 33 150 62 179 3.72e-35 120
Msa0500910 MtrunA17_Chr4g0045284 46.610 118 63 0 33 150 61 178 4.59e-35 120
Msa0500910 MtrunA17_Chr4g0045281 45.763 118 64 0 33 150 62 179 7.01e-35 119
Msa0500910 MtrunA17_Chr4g0045271 45.588 68 37 0 83 150 1 68 1.36e-16 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0500910 AT2G15780.1 42.478 113 63 1 33 145 142 252 9.78e-25 95.9
Msa0500910 AT2G15770.1 38.793 116 69 1 30 145 141 254 2.16e-23 93.2
Msa0500910 AT4G33930.1 35.897 117 58 6 43 148 229 339 7.07e-12 62.0
Msa0500910 AT4G34300.1 35.652 115 56 6 43 145 198 306 3.42e-11 60.1

Find 62 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCCAATGTGTCATTTATT+TGG 0.160335 3_4:+41573216 None:intergenic
AATTCAAAATATAAATAAAA+TGG 0.191769 3_4:-41572642 Msa0500910:three_prime_UTR
TTGAATTCAACAACGTTATA+AGG 0.223652 3_4:+41572658 None:intergenic
GAAATCAGTTGCTTTAAAAT+AGG 0.242477 3_4:+41572680 None:intergenic
CTTCCTTGTGATTGCTTCAA+TGG 0.264782 3_4:-41573351 Msa0500910:CDS
TCCAACCAAGATGCTTCTTT+TGG 0.296074 3_4:+41573301 None:intergenic
GTGATTGCTTCAATGGTTGC+AGG 0.311734 3_4:-41573344 Msa0500910:CDS
GGGAATTGGACTAAATTAAA+AGG 0.331947 3_4:+41572719 None:intergenic
ATGAGGGTGAAGAGGGGAAT+TGG 0.340973 3_4:+41572705 None:intergenic
TCATCAGAGGCAAAGTAATA+AGG 0.345121 3_4:+41572804 None:intergenic
TACACGACGTGTGAATTTAG+AGG 0.385924 3_4:-41572897 Msa0500910:CDS
GCTTCAATGGTTGCAGGGTC+AGG 0.401233 3_4:-41573338 Msa0500910:CDS
GACTCTGAAGGTTGGCGTGC+AGG 0.411668 3_4:-41573278 Msa0500910:CDS
AATTAAAAGGAACGTGTAGA+TGG 0.428002 3_4:+41572732 None:intergenic
AATACATCATCATATTATCT+AGG 0.431282 3_4:+41572553 None:intergenic
TATTACTTTGCCTCTGATGA+AGG 0.434564 3_4:-41572801 Msa0500910:CDS
ATTCAAAATATAAATAAAAT+GGG 0.447588 3_4:-41572641 Msa0500910:three_prime_UTR
AATGCCTATGACTGTATTGC+TGG 0.454610 3_4:-41572777 Msa0500910:CDS
GAGTCCAGCAATACAGTCAT+AGG 0.464321 3_4:+41572773 None:intergenic
GTCGTGTAACTCCACATATT+CGG 0.471065 3_4:+41572912 None:intergenic
AATTCCCCTCTTCACCCTCA+TGG 0.480388 3_4:-41572703 Msa0500910:three_prime_UTR
CAATGTGTCATTTATTTGGA+AGG 0.485349 3_4:+41573220 None:intergenic
TTTAGAGGAGCAAAGTTGCT+TGG 0.490765 3_4:-41572882 Msa0500910:CDS
TTTACTTGCTACCGAATATG+TGG 0.498287 3_4:-41572923 Msa0500910:CDS
TTCCAAATAAATGACACATT+GGG 0.508285 3_4:-41573218 Msa0500910:intron
ATGTGTCATTTATTTGGAAG+GGG 0.525400 3_4:+41573222 None:intergenic
AATGTGTCATTTATTTGGAA+GGG 0.530429 3_4:+41573221 None:intergenic
CTTCCAAATAAATGACACAT+TGG 0.530831 3_4:-41573219 Msa0500910:CDS
CAGAACCAAAAGAAGCATCT+TGG 0.539687 3_4:-41573306 Msa0500910:CDS
ACCAAAAGAAGCATCTTGGT+TGG 0.551375 3_4:-41573302 Msa0500910:CDS
GGTTGCAGGGTCAGGAAGCA+AGG 0.552711 3_4:-41573330 Msa0500910:CDS
CAGGCACTAACTACACCCAA+TGG 0.558303 3_4:-41573259 Msa0500910:CDS
ATAGGCCATGAGGGTGAAGA+GGG 0.559378 3_4:+41572698 None:intergenic
TGCTTTAAAATAGGCCATGA+GGG 0.565365 3_4:+41572689 None:intergenic
GCTGATCAAGGTGGTGGTGA+GGG 0.565763 3_4:-41572855 Msa0500910:CDS
TGATTGCTTCAATGGTTGCA+GGG 0.566600 3_4:-41573343 Msa0500910:CDS
TTCGGTAGCAAGTAAACGCT+GGG 0.568902 3_4:+41572930 None:intergenic
AATAGGCCATGAGGGTGAAG+AGG 0.582433 3_4:+41572697 None:intergenic
TGGTTGGAGACTCTGAAGGT+TGG 0.582794 3_4:-41573286 Msa0500910:CDS
AGGCACTAACTACACCCAAT+GGG 0.584087 3_4:-41573258 Msa0500910:CDS
ATTCGGTAGCAAGTAAACGC+TGG 0.587303 3_4:+41572929 None:intergenic
AACCGTGGAATTTCCTGAAG+GGG 0.598371 3_4:+41572956 None:intergenic
AGATGGAACAGCAATGAACT+TGG 0.599581 3_4:+41572749 None:intergenic
TAAAGATTGAGCTGAATCAG+TGG 0.605281 3_4:-41572830 Msa0500910:CDS
TGCTGATCAAGGTGGTGGTG+AGG 0.607379 3_4:-41572856 Msa0500910:CDS
ATAGGCATTGCCTTCATCAG+AGG 0.610448 3_4:+41572791 None:intergenic
ATGTCTAGAATTCTCATACA+AGG 0.613782 3_4:-41573380 Msa0500910:CDS
CAATCAACTAATCATATCGT+AGG 0.615231 3_4:-41573431 None:intergenic
GGTAATGCTGATCAAGGTGG+TGG 0.619304 3_4:-41572861 Msa0500910:CDS
ACCGTGGAATTTCCTGAAGG+GGG 0.620984 3_4:+41572957 None:intergenic
TTGCTTGGTAATGCTGATCA+AGG 0.621103 3_4:-41572867 Msa0500910:CDS
ATCTTGGTTGGAGACTCTGA+AGG 0.629130 3_4:-41573290 Msa0500910:CDS
CAACCATTGAAGCAATCACA+AGG 0.631574 3_4:+41573348 None:intergenic
TTGCTTTAAAATAGGCCATG+AGG 0.644322 3_4:+41572688 None:intergenic
CAAAATATAAATAAAATGGG+TGG 0.650348 3_4:-41572638 Msa0500910:three_prime_UTR
CAACCGTGGAATTTCCTGAA+GGG 0.654328 3_4:+41572955 None:intergenic
ACAACCGTGGAATTTCCTGA+AGG 0.668113 3_4:+41572954 None:intergenic
CTTGGTAATGCTGATCAAGG+TGG 0.670664 3_4:-41572864 Msa0500910:CDS
ACATCATCATATTATCTAGG+TGG 0.674676 3_4:+41572556 None:intergenic
GTAAACGCTGGGAACAACCG+TGG 0.691075 3_4:+41572941 None:intergenic
CCGTGGAATTTCCTGAAGGG+GGG 0.694717 3_4:+41572958 None:intergenic
TAGGCCATGAGGGTGAAGAG+GGG 0.735281 3_4:+41572699 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTCAAATTATTATCAA+AGG - chr3_4:41572861-41572880 Msa0500910:CDS 10.0%
!!! TTTTTTCAAATTATTATCAA+AGG - chr3_4:41572861-41572880 Msa0500910:CDS 10.0%
!! TTAAATATAATTAAATGCGT+TGG + chr3_4:41572832-41572851 None:intergenic 15.0%
!! ATAATTTGAAAAAATCAAAG+TGG + chr3_4:41572855-41572874 None:intergenic 15.0%
!!! AAAAATTGTGATTTTTGTTT+TGG - chr3_4:41573366-41573385 Msa0500910:CDS 15.0%
!! TTAAATATAATTAAATGCGT+TGG + chr3_4:41572832-41572851 None:intergenic 15.0%
!! ATAATTTGAAAAAATCAAAG+TGG + chr3_4:41572855-41572874 None:intergenic 15.0%
!!! AAAAATTGTGATTTTTGTTT+TGG - chr3_4:41573366-41573385 Msa0500910:CDS 15.0%
!!! TTTGATTGATGGATTAATTT+TGG - chr3_4:41572936-41572955 Msa0500910:CDS 20.0%
!! CAAAATATAAATAAAATGGG+TGG - chr3_4:41573313-41573332 Msa0500910:CDS 20.0%
!!! AATCACAATTTTTTTTCTGT+TGG + chr3_4:41573359-41573378 None:intergenic 20.0%
!! AATACATCATCATATTATCT+AGG + chr3_4:41573401-41573420 None:intergenic 20.0%
!!! TTTGATTGATGGATTAATTT+TGG - chr3_4:41572936-41572955 Msa0500910:CDS 20.0%
!! CAAAATATAAATAAAATGGG+TGG - chr3_4:41573313-41573332 Msa0500910:CDS 20.0%
!!! AATCACAATTTTTTTTCTGT+TGG + chr3_4:41573359-41573378 None:intergenic 20.0%
!! AATACATCATCATATTATCT+AGG + chr3_4:41573401-41573420 None:intergenic 20.0%
!!! AATGTGTCATTTATTTGGAA+GGG + chr3_4:41572733-41572752 None:intergenic 25.0%
! TTCCAAATAAATGACACATT+GGG - chr3_4:41572733-41572752 Msa0500910:exon 25.0%
! CAATATATATGCACAAACAA+TGG + chr3_4:41572899-41572918 None:intergenic 25.0%
!!! GAAATCAGTTGCTTTAAAAT+AGG + chr3_4:41573274-41573293 None:intergenic 25.0%
! TTGAATTCAACAACGTTATA+AGG + chr3_4:41573296-41573315 None:intergenic 25.0%
!!! AATGTGTCATTTATTTGGAA+GGG + chr3_4:41572733-41572752 None:intergenic 25.0%
! TTCCAAATAAATGACACATT+GGG - chr3_4:41572733-41572752 Msa0500910:exon 25.0%
! CAATATATATGCACAAACAA+TGG + chr3_4:41572899-41572918 None:intergenic 25.0%
!!! GAAATCAGTTGCTTTAAAAT+AGG + chr3_4:41573274-41573293 None:intergenic 25.0%
! TTGAATTCAACAACGTTATA+AGG + chr3_4:41573296-41573315 None:intergenic 25.0%
! ATGTCTAGAATTCTCATACA+AGG - chr3_4:41572571-41572590 Msa0500910:three_prime_UTR 30.0%
!! ATGTGTCATTTATTTGGAAG+GGG + chr3_4:41572732-41572751 None:intergenic 30.0%
!! CAATGTGTCATTTATTTGGA+AGG + chr3_4:41572734-41572753 None:intergenic 30.0%
CTTCCAAATAAATGACACAT+TGG - chr3_4:41572732-41572751 Msa0500910:exon 30.0%
!! TACCCAATGTGTCATTTATT+TGG + chr3_4:41572738-41572757 None:intergenic 30.0%
CTTCTTCTTCATTTGATTGA+TGG - chr3_4:41572925-41572944 Msa0500910:CDS 30.0%
AATTAAAAGGAACGTGTAGA+TGG + chr3_4:41573222-41573241 None:intergenic 30.0%
GGGAATTGGACTAAATTAAA+AGG + chr3_4:41573235-41573254 None:intergenic 30.0%
ACATCATCATATTATCTAGG+TGG + chr3_4:41573398-41573417 None:intergenic 30.0%
! ATGTCTAGAATTCTCATACA+AGG - chr3_4:41572571-41572590 Msa0500910:three_prime_UTR 30.0%
!! ATGTGTCATTTATTTGGAAG+GGG + chr3_4:41572732-41572751 None:intergenic 30.0%
!! CAATGTGTCATTTATTTGGA+AGG + chr3_4:41572734-41572753 None:intergenic 30.0%
CTTCCAAATAAATGACACAT+TGG - chr3_4:41572732-41572751 Msa0500910:exon 30.0%
!! TACCCAATGTGTCATTTATT+TGG + chr3_4:41572738-41572757 None:intergenic 30.0%
CTTCTTCTTCATTTGATTGA+TGG - chr3_4:41572925-41572944 Msa0500910:CDS 30.0%
AATTAAAAGGAACGTGTAGA+TGG + chr3_4:41573222-41573241 None:intergenic 30.0%
GGGAATTGGACTAAATTAAA+AGG + chr3_4:41573235-41573254 None:intergenic 30.0%
ACATCATCATATTATCTAGG+TGG + chr3_4:41573398-41573417 None:intergenic 30.0%
!!! GCTATTTTTTATGGCCCATT+GGG + chr3_4:41572710-41572729 None:intergenic 35.0%
!!! TTGGAAGGGGCTATTTTTTA+TGG + chr3_4:41572719-41572738 None:intergenic 35.0%
! TTTACTTGCTACCGAATATG+TGG - chr3_4:41573028-41573047 Msa0500910:intron 35.0%
TAAAGATTGAGCTGAATCAG+TGG - chr3_4:41573121-41573140 Msa0500910:intron 35.0%
TCATCAGAGGCAAAGTAATA+AGG + chr3_4:41573150-41573169 None:intergenic 35.0%
TATTACTTTGCCTCTGATGA+AGG - chr3_4:41573150-41573169 Msa0500910:intron 35.0%
!! TGCTTTAAAATAGGCCATGA+GGG + chr3_4:41573265-41573284 None:intergenic 35.0%
!! TTGCTTTAAAATAGGCCATG+AGG + chr3_4:41573266-41573285 None:intergenic 35.0%
!!! GCTATTTTTTATGGCCCATT+GGG + chr3_4:41572710-41572729 None:intergenic 35.0%
!!! TTGGAAGGGGCTATTTTTTA+TGG + chr3_4:41572719-41572738 None:intergenic 35.0%
! TTTACTTGCTACCGAATATG+TGG - chr3_4:41573028-41573047 Msa0500910:intron 35.0%
TAAAGATTGAGCTGAATCAG+TGG - chr3_4:41573121-41573140 Msa0500910:intron 35.0%
TCATCAGAGGCAAAGTAATA+AGG + chr3_4:41573150-41573169 None:intergenic 35.0%
TATTACTTTGCCTCTGATGA+AGG - chr3_4:41573150-41573169 Msa0500910:intron 35.0%
!! TGCTTTAAAATAGGCCATGA+GGG + chr3_4:41573265-41573284 None:intergenic 35.0%
!! TTGCTTTAAAATAGGCCATG+AGG + chr3_4:41573266-41573285 None:intergenic 35.0%
CTTCCTTGTGATTGCTTCAA+TGG - chr3_4:41572600-41572619 Msa0500910:three_prime_UTR 40.0%
CAACCATTGAAGCAATCACA+AGG + chr3_4:41572606-41572625 None:intergenic 40.0%
TGATTGCTTCAATGGTTGCA+GGG - chr3_4:41572608-41572627 Msa0500910:three_prime_UTR 40.0%
!!! CAAGATGCTTCTTTTGGTTC+TGG + chr3_4:41572647-41572666 None:intergenic 40.0%
!! CAGAACCAAAAGAAGCATCT+TGG - chr3_4:41572645-41572664 Msa0500910:three_prime_UTR 40.0%
!! ACCAAAAGAAGCATCTTGGT+TGG - chr3_4:41572649-41572668 Msa0500910:three_prime_UTR 40.0%
! TCCAACCAAGATGCTTCTTT+TGG + chr3_4:41572653-41572672 None:intergenic 40.0%
!!! GGCTATTTTTTATGGCCCAT+TGG + chr3_4:41572711-41572730 None:intergenic 40.0%
GTCGTGTAACTCCACATATT+CGG + chr3_4:41573042-41573061 None:intergenic 40.0%
TACACGACGTGTGAATTTAG+AGG - chr3_4:41573054-41573073 Msa0500910:intron 40.0%
TTTAGAGGAGCAAAGTTGCT+TGG - chr3_4:41573069-41573088 Msa0500910:intron 40.0%
!! TTGCTTGGTAATGCTGATCA+AGG - chr3_4:41573084-41573103 Msa0500910:intron 40.0%
AATGCCTATGACTGTATTGC+TGG - chr3_4:41573174-41573193 Msa0500910:intron 40.0%
AGATGGAACAGCAATGAACT+TGG + chr3_4:41573205-41573224 None:intergenic 40.0%
CTTCCTTGTGATTGCTTCAA+TGG - chr3_4:41572600-41572619 Msa0500910:three_prime_UTR 40.0%
CAACCATTGAAGCAATCACA+AGG + chr3_4:41572606-41572625 None:intergenic 40.0%
TGATTGCTTCAATGGTTGCA+GGG - chr3_4:41572608-41572627 Msa0500910:three_prime_UTR 40.0%
!!! CAAGATGCTTCTTTTGGTTC+TGG + chr3_4:41572647-41572666 None:intergenic 40.0%
!! CAGAACCAAAAGAAGCATCT+TGG - chr3_4:41572645-41572664 Msa0500910:three_prime_UTR 40.0%
!! ACCAAAAGAAGCATCTTGGT+TGG - chr3_4:41572649-41572668 Msa0500910:three_prime_UTR 40.0%
! TCCAACCAAGATGCTTCTTT+TGG + chr3_4:41572653-41572672 None:intergenic 40.0%
!!! GGCTATTTTTTATGGCCCAT+TGG + chr3_4:41572711-41572730 None:intergenic 40.0%
GTCGTGTAACTCCACATATT+CGG + chr3_4:41573042-41573061 None:intergenic 40.0%
TACACGACGTGTGAATTTAG+AGG - chr3_4:41573054-41573073 Msa0500910:intron 40.0%
TTTAGAGGAGCAAAGTTGCT+TGG - chr3_4:41573069-41573088 Msa0500910:intron 40.0%
!! TTGCTTGGTAATGCTGATCA+AGG - chr3_4:41573084-41573103 Msa0500910:intron 40.0%
AATGCCTATGACTGTATTGC+TGG - chr3_4:41573174-41573193 Msa0500910:intron 40.0%
AGATGGAACAGCAATGAACT+TGG + chr3_4:41573205-41573224 None:intergenic 40.0%
GTGATTGCTTCAATGGTTGC+AGG - chr3_4:41572607-41572626 Msa0500910:three_prime_UTR 45.0%
ATCTTGGTTGGAGACTCTGA+AGG - chr3_4:41572661-41572680 Msa0500910:three_prime_UTR 45.0%
AGGCACTAACTACACCCAAT+GGG - chr3_4:41572693-41572712 Msa0500910:three_prime_UTR 45.0%
AACCGTGGAATTTCCTGAAG+GGG + chr3_4:41572998-41573017 None:intergenic 45.0%
CAACCGTGGAATTTCCTGAA+GGG + chr3_4:41572999-41573018 None:intergenic 45.0%
ACAACCGTGGAATTTCCTGA+AGG + chr3_4:41573000-41573019 None:intergenic 45.0%
TTCGGTAGCAAGTAAACGCT+GGG + chr3_4:41573024-41573043 None:intergenic 45.0%
ATTCGGTAGCAAGTAAACGC+TGG + chr3_4:41573025-41573044 None:intergenic 45.0%
!! CTTGGTAATGCTGATCAAGG+TGG - chr3_4:41573087-41573106 Msa0500910:intron 45.0%
! ATAGGCATTGCCTTCATCAG+AGG + chr3_4:41573163-41573182 None:intergenic 45.0%
GAGTCCAGCAATACAGTCAT+AGG + chr3_4:41573181-41573200 None:intergenic 45.0%
GTGATTGCTTCAATGGTTGC+AGG - chr3_4:41572607-41572626 Msa0500910:three_prime_UTR 45.0%
ATCTTGGTTGGAGACTCTGA+AGG - chr3_4:41572661-41572680 Msa0500910:three_prime_UTR 45.0%
AGGCACTAACTACACCCAAT+GGG - chr3_4:41572693-41572712 Msa0500910:three_prime_UTR 45.0%
AACCGTGGAATTTCCTGAAG+GGG + chr3_4:41572998-41573017 None:intergenic 45.0%
CAACCGTGGAATTTCCTGAA+GGG + chr3_4:41572999-41573018 None:intergenic 45.0%
ACAACCGTGGAATTTCCTGA+AGG + chr3_4:41573000-41573019 None:intergenic 45.0%
TTCGGTAGCAAGTAAACGCT+GGG + chr3_4:41573024-41573043 None:intergenic 45.0%
ATTCGGTAGCAAGTAAACGC+TGG + chr3_4:41573025-41573044 None:intergenic 45.0%
!! CTTGGTAATGCTGATCAAGG+TGG - chr3_4:41573087-41573106 Msa0500910:intron 45.0%
! ATAGGCATTGCCTTCATCAG+AGG + chr3_4:41573163-41573182 None:intergenic 45.0%
GAGTCCAGCAATACAGTCAT+AGG + chr3_4:41573181-41573200 None:intergenic 45.0%
!! AATTCAAAATATAAATAAAA+TGG - chr3_4:41573309-41573328 Msa0500910:CDS 5.0%
!! ATTCAAAATATAAATAAAAT+GGG - chr3_4:41573310-41573329 Msa0500910:CDS 5.0%
!! AATTCAAAATATAAATAAAA+TGG - chr3_4:41573309-41573328 Msa0500910:CDS 5.0%
!! ATTCAAAATATAAATAAAAT+GGG - chr3_4:41573310-41573329 Msa0500910:CDS 5.0%
! TGGTTGGAGACTCTGAAGGT+TGG - chr3_4:41572665-41572684 Msa0500910:three_prime_UTR 50.0%
CAGGCACTAACTACACCCAA+TGG - chr3_4:41572692-41572711 Msa0500910:three_prime_UTR 50.0%
ACCGTGGAATTTCCTGAAGG+GGG + chr3_4:41572997-41573016 None:intergenic 50.0%
GGTAATGCTGATCAAGGTGG+TGG - chr3_4:41573090-41573109 Msa0500910:intron 50.0%
ATGAGGGTGAAGAGGGGAAT+TGG + chr3_4:41573249-41573268 None:intergenic 50.0%
AATTCCCCTCTTCACCCTCA+TGG - chr3_4:41573248-41573267 Msa0500910:CDS 50.0%
ATAGGCCATGAGGGTGAAGA+GGG + chr3_4:41573256-41573275 None:intergenic 50.0%
AATAGGCCATGAGGGTGAAG+AGG + chr3_4:41573257-41573276 None:intergenic 50.0%
! TGGTTGGAGACTCTGAAGGT+TGG - chr3_4:41572665-41572684 Msa0500910:three_prime_UTR 50.0%
CAGGCACTAACTACACCCAA+TGG - chr3_4:41572692-41572711 Msa0500910:three_prime_UTR 50.0%
ACCGTGGAATTTCCTGAAGG+GGG + chr3_4:41572997-41573016 None:intergenic 50.0%
GGTAATGCTGATCAAGGTGG+TGG - chr3_4:41573090-41573109 Msa0500910:intron 50.0%
ATGAGGGTGAAGAGGGGAAT+TGG + chr3_4:41573249-41573268 None:intergenic 50.0%
AATTCCCCTCTTCACCCTCA+TGG - chr3_4:41573248-41573267 Msa0500910:CDS 50.0%
ATAGGCCATGAGGGTGAAGA+GGG + chr3_4:41573256-41573275 None:intergenic 50.0%
AATAGGCCATGAGGGTGAAG+AGG + chr3_4:41573257-41573276 None:intergenic 50.0%
GCTTCAATGGTTGCAGGGTC+AGG - chr3_4:41572613-41572632 Msa0500910:three_prime_UTR 55.0%
GTGTTCAAGTACCCCCCTTC+AGG - chr3_4:41572982-41573001 Msa0500910:intron 55.0%
CCGTGGAATTTCCTGAAGGG+GGG + chr3_4:41572996-41573015 None:intergenic 55.0%
CCCCCCTTCAGGAAATTCCA+CGG - chr3_4:41572993-41573012 Msa0500910:intron 55.0%
GTAAACGCTGGGAACAACCG+TGG + chr3_4:41573013-41573032 None:intergenic 55.0%
! TGCTGATCAAGGTGGTGGTG+AGG - chr3_4:41573095-41573114 Msa0500910:intron 55.0%
! GCTGATCAAGGTGGTGGTGA+GGG - chr3_4:41573096-41573115 Msa0500910:intron 55.0%
TAGGCCATGAGGGTGAAGAG+GGG + chr3_4:41573255-41573274 None:intergenic 55.0%
GCTTCAATGGTTGCAGGGTC+AGG - chr3_4:41572613-41572632 Msa0500910:three_prime_UTR 55.0%
GTGTTCAAGTACCCCCCTTC+AGG - chr3_4:41572982-41573001 Msa0500910:intron 55.0%
CCGTGGAATTTCCTGAAGGG+GGG + chr3_4:41572996-41573015 None:intergenic 55.0%
CCCCCCTTCAGGAAATTCCA+CGG - chr3_4:41572993-41573012 Msa0500910:intron 55.0%
GTAAACGCTGGGAACAACCG+TGG + chr3_4:41573013-41573032 None:intergenic 55.0%
! TGCTGATCAAGGTGGTGGTG+AGG - chr3_4:41573095-41573114 Msa0500910:intron 55.0%
! GCTGATCAAGGTGGTGGTGA+GGG - chr3_4:41573096-41573115 Msa0500910:intron 55.0%
TAGGCCATGAGGGTGAAGAG+GGG + chr3_4:41573255-41573274 None:intergenic 55.0%
GGTTGCAGGGTCAGGAAGCA+AGG - chr3_4:41572621-41572640 Msa0500910:three_prime_UTR 60.0%
! GACTCTGAAGGTTGGCGTGC+AGG - chr3_4:41572673-41572692 Msa0500910:three_prime_UTR 60.0%
GGTTGCAGGGTCAGGAAGCA+AGG - chr3_4:41572621-41572640 Msa0500910:three_prime_UTR 60.0%
! GACTCTGAAGGTTGGCGTGC+AGG - chr3_4:41572673-41572692 Msa0500910:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 41572525 41573448 41572525 ID=Msa0500910;Name=Msa0500910
chr3_4 mRNA 41572525 41573448 41572525 ID=Msa0500910-mRNA-1;Parent=Msa0500910;Name=Msa0500910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=34|1|1|1|1|1|2|209|150
chr3_4 exon 41572525 41572990 41572525 ID=Msa0500910-mRNA-1:exon:8675;Parent=Msa0500910-mRNA-1
chr3_4 exon 41573219 41573448 41573219 ID=Msa0500910-mRNA-1:exon:8674;Parent=Msa0500910-mRNA-1
chr3_4 five_prime_UTR 41573415 41573448 41573415 ID=Msa0500910-mRNA-1:five_prime_utr;Parent=Msa0500910-mRNA-1
chr3_4 CDS 41573219 41573414 41573219 ID=Msa0500910-mRNA-1:cds;Parent=Msa0500910-mRNA-1
chr3_4 CDS 41572734 41572990 41572734 ID=Msa0500910-mRNA-1:cds;Parent=Msa0500910-mRNA-1
chr3_4 three_prime_UTR 41572525 41572733 41572525 ID=Msa0500910-mRNA-1:three_prime_utr;Parent=Msa0500910-mRNA-1
Gene Sequence

>Msa0500910

ATGCATAAACATATGTCTAGAATTCTCATACAAGGAGTTATCTTCCTTGTGATTGCTTCAATGGTTGCAGGGTCAGGAAGCAAGGCCAGAACCAAAAGAAGCATCTTGGTTGGAGACTCTGAAGGTTGGCGTGCAGGCACTAACTACACCCAATGGGCCATAAAAAATAGCCCCTTCCAAATAAATGACACATTGGTGTTCAAGTACCCCCCTTCAGGAAATTCCACGGTTGTTCCCAGCGTTTACTTGCTACCGAATATGTGGAGTTACACGACGTGTGAATTTAGAGGAGCAAAGTTGCTTGGTAATGCTGATCAAGGTGGTGGTGAGGGCATAAAGATTGAGCTGAATCAGTGGAAGCCTTATTACTTTGCCTCTGATGAAGGCAATGCCTATGACTGTATTGCTGGACTCACCAAGTTCATTGCTGTTCCATCTACACGTTCCTTTTAA

Protein sequence

>Msa0500910

MHKHMSRILIQGVIFLVIASMVAGSGSKARTKRSILVGDSEGWRAGTNYTQWAIKNSPFQINDTLVFKYPPSGNSTVVPSVYLLPNMWSYTTCEFRGAKLLGNADQGGGEGIKIELNQWKPYYFASDEGNAYDCIAGLTKFIAVPSTRSF*