AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0505640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0505640 MtrunA17_Chr3g0106901 95.298 319 12 2 1 316 5 323 0.0 584
Msa0505640 MtrunA17_Chr7g0244461 67.213 305 98 1 14 316 8 312 2.60e-149 421
Msa0505640 MtrunA17_Chr7g0244451 63.810 315 112 1 4 316 2 316 2.54e-142 404
Msa0505640 MtrunA17_Chr3g0129051 60.577 312 119 2 9 316 11 322 7.17e-135 385
Msa0505640 MtrunA17_Chr4g0013191 61.873 299 109 3 23 316 42 340 1.10e-134 385
Msa0505640 MtrunA17_Chr4g0013201 60.000 295 116 1 24 316 44 338 2.04e-134 385
Msa0505640 MtrunA17_Chr3g0114451 58.730 315 126 2 6 316 4 318 2.25e-133 381
Msa0505640 MtrunA17_Chr5g0438021 59.375 320 124 3 3 316 6 325 8.19e-133 380
Msa0505640 MtrunA17_Chr3g0129061 61.218 312 114 3 9 316 14 322 4.27e-130 373
Msa0505640 MtrunA17_Chr2g0320071 59.807 311 122 2 9 316 7 317 6.34e-130 372
Msa0505640 MtrunA17_Chr4g0038151 58.696 322 126 4 1 316 1 321 9.49e-129 370
Msa0505640 MtrunA17_Chr5g0432441 59.177 316 122 4 8 316 11 326 3.36e-128 369
Msa0505640 MtrunA17_Chr2g0320061 59.295 312 123 3 9 316 7 318 1.55e-127 367
Msa0505640 MtrunA17_Chr3g0106921 57.742 310 126 3 12 316 11 320 5.57e-127 365
Msa0505640 MtrunA17_Chr4g0043391 58.514 323 125 5 1 316 4 324 7.61e-127 365
Msa0505640 MtrunA17_Chr2g0320101 58.199 311 127 2 9 316 7 317 8.59e-127 365
Msa0505640 MtrunA17_Chr4g0038161 57.812 320 127 4 5 316 1 320 3.73e-126 363
Msa0505640 MtrunA17_Chr4g0038171 59.133 323 123 5 1 316 1 321 1.23e-125 362
Msa0505640 MtrunA17_Chr1g0213061 58.917 314 119 5 12 316 9 321 2.15e-124 359
Msa0505640 MtrunA17_Chr7g0224371 58.654 312 122 4 11 316 12 322 2.65e-124 358
Msa0505640 MtrunA17_Chr2g0320051 58.013 312 124 3 12 316 7 318 3.61e-124 358
Msa0505640 MtrunA17_Chr3g0129041 63.636 297 104 2 24 316 26 322 4.28e-124 358
Msa0505640 MtrunA17_Chr4g0013171 53.894 321 143 4 1 316 1 321 3.37e-123 355
Msa0505640 MtrunA17_Chr2g0320091 56.410 312 132 3 9 316 7 318 3.15e-120 348
Msa0505640 MtrunA17_Chr2g0320031 54.430 316 136 3 9 316 4 319 4.73e-119 345
Msa0505640 MtrunA17_Chr4g0013181 56.164 292 124 3 29 316 62 353 1.46e-116 340
Msa0505640 MtrunA17_Chr3g0107881 53.395 324 143 5 1 316 1 324 5.14e-115 335
Msa0505640 MtrunA17_Chr5g0432341 52.848 316 136 6 13 316 7 321 4.20e-111 325
Msa0505640 MtrunA17_Chr5g0432351 52.201 318 139 6 11 316 5 321 1.12e-110 324
Msa0505640 MtrunA17_Chr5g0432331 51.402 321 147 6 4 316 33 352 1.77e-110 325
Msa0505640 MtrunA17_Chr5g0404721 48.837 301 144 3 26 316 30 330 4.34e-101 300
Msa0505640 MtrunA17_Chr4g0068621 50.836 299 139 3 26 316 38 336 6.41e-101 300
Msa0505640 MtrunA17_Chr1g0175561 47.812 320 153 5 9 316 9 326 1.23e-100 298
Msa0505640 MtrunA17_Chr5g0402571 47.988 323 156 5 4 316 6 326 7.20e-100 296
Msa0505640 MtrunA17_Chr8g0372601 48.505 301 145 3 26 316 30 330 8.38e-100 296
Msa0505640 MtrunA17_Chr4g0070951 46.224 331 161 5 1 316 1 329 8.75e-100 296
Msa0505640 MtrunA17_Chr2g0299691 47.678 323 148 5 13 316 38 358 4.05e-97 291
Msa0505640 MtrunA17_Chr5g0402581 47.368 323 158 5 4 316 6 326 4.38e-97 290
Msa0505640 MtrunA17_Chr7g0258811 44.172 326 170 4 3 316 46 371 5.33e-94 283
Msa0505640 MtrunA17_Chr5g0400331 49.032 310 141 4 23 316 23 331 2.40e-93 280
Msa0505640 MtrunA17_Chr2g0292251 47.039 304 150 3 24 316 26 329 4.40e-92 278
Msa0505640 MtrunA17_Chr1g0155611 46.689 302 150 3 26 316 46 347 6.03e-92 277
Msa0505640 MtrunA17_Chr2g0292091 45.066 304 156 3 24 316 22 325 9.55e-91 274
Msa0505640 MtrunA17_Chr2g0292211 45.625 320 162 4 9 316 22 341 1.17e-90 274
Msa0505640 MtrunA17_Chr2g0292181 46.053 304 153 3 24 316 36 339 6.99e-90 272
Msa0505640 MtrunA17_Chr2g0291751 44.762 315 162 4 14 316 16 330 6.48e-89 270
Msa0505640 MtrunA17_Chr2g0292151 45.574 305 155 3 23 316 26 330 6.49e-89 270
Msa0505640 MtrunA17_Chr2g0292271 43.750 320 166 4 11 316 11 330 1.51e-88 268
Msa0505640 MtrunA17_Chr2g0292111 45.246 305 156 3 23 316 26 330 2.65e-88 268
Msa0505640 MtrunA17_Chr5g0432401 44.479 317 123 7 12 315 9 285 5.54e-87 262
Msa0505640 MtrunA17_Chr4g0013721 46.205 303 151 4 23 316 97 396 6.12e-87 266
Msa0505640 MtrunA17_Chr2g0292241 45.574 305 155 3 23 316 26 330 1.04e-86 264
Msa0505640 MtrunA17_Chr4g0013821 42.902 317 169 4 9 316 11 324 1.84e-85 260
Msa0505640 MtrunA17_Chr5g0421411 46.667 285 135 7 47 316 3 285 2.07e-84 256
Msa0505640 MtrunA17_Chr1g0188431 43.671 316 165 7 9 316 17 327 2.19e-84 257
Msa0505640 MtrunA17_Chr2g0292261 43.934 305 160 3 23 316 26 330 8.89e-83 254
Msa0505640 MtrunA17_Chr2g0292291 43.137 306 162 4 23 316 27 332 1.63e-82 253
Msa0505640 MtrunA17_Chr2g0292101 43.092 304 162 3 24 316 23 326 3.04e-82 252
Msa0505640 MtrunA17_Chr6g0477071 42.761 297 162 6 23 316 51 342 8.86e-79 243
Msa0505640 MtrunA17_Chr1g0204011 40.127 314 175 5 12 316 13 322 2.68e-78 241
Msa0505640 MtrunA17_Chr3g0128061 41.250 320 177 4 8 316 7 326 3.31e-76 236
Msa0505640 MtrunA17_Chr2g0279041 40.923 325 172 8 7 316 6 325 1.74e-75 234
Msa0505640 MtrunA17_Chr1g0164891 43.667 300 156 6 30 316 93 392 7.35e-75 235
Msa0505640 MtrunA17_Chr7g0254201 41.311 305 167 5 19 316 13 312 8.30e-75 232
Msa0505640 MtrunA17_Chr2g0322861 39.688 320 180 6 8 316 69 386 1.98e-74 233
Msa0505640 MtrunA17_Chr4g0024121 37.152 323 192 4 4 316 5 326 1.39e-73 229
Msa0505640 MtrunA17_Chr7g0268501 39.130 322 182 6 5 316 3 320 1.25e-72 227
Msa0505640 MtrunA17_Chr7g0268521 39.130 322 182 6 5 316 3 320 1.25e-72 227
Msa0505640 MtrunA17_Chr8g0371381 43.046 302 153 8 26 316 26 319 1.42e-72 226
Msa0505640 MtrunA17_Chr4g0063671 40.125 319 172 6 12 316 7 320 4.03e-72 225
Msa0505640 MtrunA17_Chr1g0194151 43.648 307 160 5 23 316 27 333 6.32e-72 225
Msa0505640 MtrunA17_Chr7g0225221 38.835 309 182 4 14 316 13 320 2.30e-71 223
Msa0505640 MtrunA17_Chr1g0157051 39.873 316 176 5 9 315 7 317 4.05e-71 223
Msa0505640 MtrunA17_Chr6g0460711 39.048 315 176 7 9 316 9 314 8.60e-70 219
Msa0505640 MtrunA17_Chr1g0194271 42.675 314 160 5 23 316 27 340 1.02e-69 220
Msa0505640 MtrunA17_Chr5g0405991 40.439 319 167 10 12 316 7 316 1.23e-69 219
Msa0505640 MtrunA17_Chr1g0197411 38.344 326 189 5 3 316 5 330 1.28e-69 219
Msa0505640 MtrunA17_Chr7g0254231 40.203 296 166 6 26 316 22 311 5.11e-69 217
Msa0505640 MtrunA17_Chr8g0364291 37.963 324 189 5 5 316 1 324 1.09e-66 212
Msa0505640 MtrunA17_Chr4g0076211 40.878 296 157 7 31 316 46 333 1.15e-66 212
Msa0505640 MtrunA17_Chr2g0296621 39.867 301 162 7 26 316 50 341 2.15e-66 211
Msa0505640 MtrunA17_Chr3g0114461 51.596 188 90 1 130 316 5 192 1.68e-65 204
Msa0505640 MtrunA17_Chr6g0451571 38.558 319 184 5 9 316 17 334 1.78e-65 209
Msa0505640 MtrunA17_Chr6g0467161 38.344 326 180 9 7 316 16 336 3.88e-65 208
Msa0505640 MtrunA17_Chr2g0316791 37.462 331 165 8 26 315 76 405 4.89e-65 210
Msa0505640 MtrunA17_Chr2g0316481 38.066 331 163 7 26 315 76 405 5.28e-65 210
Msa0505640 MtrunA17_Chr6g0467251 38.365 318 179 7 9 312 10 324 1.09e-64 207
Msa0505640 MtrunA17_Chr2g0316831 37.160 331 166 7 26 315 112 441 1.89e-63 207
Msa0505640 MtrunA17_Chr2g0278671 39.739 307 168 7 23 316 21 323 2.19e-63 203
Msa0505640 MtrunA17_Chr2g0316191 37.048 332 166 7 26 315 76 406 4.08e-63 205
Msa0505640 MtrunA17_Chr2g0311251 37.462 331 164 8 26 315 11 339 5.82e-61 197
Msa0505640 MtrunA17_Chr4g0046131 36.527 334 188 8 3 312 9 342 7.14e-61 197
Msa0505640 MtrunA17_Chr3g0136751 36.991 319 184 5 11 316 8 322 1.09e-59 194
Msa0505640 MtrunA17_Chr5g0401431 35.238 315 192 4 10 312 11 325 1.18e-59 194
Msa0505640 MtrunA17_Chr2g0311241 33.957 374 163 8 24 315 58 429 6.74e-59 195
Msa0505640 MtrunA17_Chr2g0329641 34.911 338 190 8 4 316 3 335 1.91e-58 191
Msa0505640 MtrunA17_Chr1g0148021 35.962 317 190 6 12 316 13 328 4.16e-58 190
Msa0505640 MtrunA17_Chr4g0053871 35.220 318 195 5 6 312 3 320 5.17e-58 189
Msa0505640 MtrunA17_Chr5g0413051 36.977 311 176 8 23 316 70 377 1.46e-57 190
Msa0505640 MtrunA17_Chr4g0075241 34.667 300 188 3 25 316 28 327 3.11e-57 187
Msa0505640 MtrunA17_Chr2g0279061 41.473 258 135 5 70 316 14 266 3.94e-57 185
Msa0505640 MtrunA17_Chr4g0072091 34.868 304 183 6 25 316 23 323 4.52e-54 179
Msa0505640 MtrunA17_Chr1g0181431 33.667 300 191 4 24 316 25 323 6.86e-54 179
Msa0505640 MtrunA17_Chr6g0467121 35.811 296 179 7 26 316 74 363 9.51e-54 180
Msa0505640 MtrunA17_Chr1g0181511 34.098 305 185 5 23 316 24 323 1.43e-52 175
Msa0505640 MtrunA17_Chr1g0181481 33.223 301 193 4 23 316 24 323 1.33e-51 173
Msa0505640 MtrunA17_Chr4g0004591 33.754 317 145 5 26 315 77 355 1.06e-50 171
Msa0505640 MtrunA17_Chr4g0074851 33.125 320 195 7 10 312 7 324 5.92e-50 169
Msa0505640 MtrunA17_Chr3g0114491 68.182 110 33 1 25 132 17 126 1.23e-47 156
Msa0505640 MtrunA17_Chr2g0316141 36.531 271 149 6 67 315 8 277 1.13e-45 156
Msa0505640 MtrunA17_Chr2g0316181 36.531 271 149 6 67 315 8 277 1.13e-45 156
Msa0505640 MtrunA17_Chr2g0292281 38.095 210 111 4 116 316 17 216 4.12e-43 148
Msa0505640 MtrunA17_Chr2g0316811 37.553 237 120 6 26 236 50 284 1.24e-41 147
Msa0505640 MtrunA17_Chr5g0432321 47.863 117 60 1 145 261 17 132 1.02e-32 117
Msa0505640 MtrunA17_Chr5g0432361 45.133 113 54 3 205 315 2 108 1.81e-25 98.2
Msa0505640 MtrunA17_Chr3g0104101 40.141 142 71 5 188 316 9 149 7.14e-24 95.1
Msa0505640 MtrunA17_Chr7g0254181 45.714 105 53 2 86 190 22 122 1.51e-21 89.4
Msa0505640 MtrunA17_Chr1g0181501 28.723 188 128 3 134 316 3 189 3.87e-20 86.3
Msa0505640 MtrunA17_Chr6g0468731 65.714 70 18 3 65 132 22 87 4.13e-20 83.2
Msa0505640 MtrunA17_Chr3g0137751 30.078 256 114 9 58 297 106 312 4.51e-19 86.3
Msa0505640 MtrunA17_Chr2g0316771 29.609 179 89 3 171 312 4 182 8.36e-18 80.1
Msa0505640 MtrunA17_Chr1g0181491 40.179 112 59 4 24 131 10 117 1.04e-16 75.9
Msa0505640 MtrunA17_Chr4g0013811 44.595 74 41 0 135 208 6 79 5.35e-16 72.0
Msa0505640 MtrunA17_Chr1g0196191 54.286 70 31 1 62 131 23 91 1.32e-14 70.5
Msa0505640 MtrunA17_Chr3g0124821 26.984 252 153 7 60 298 121 354 1.01e-13 71.2
Msa0505640 MtrunA17_Chr7g0254171 41.892 74 42 1 68 141 2 74 5.01e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0505640 AT5G05340.1 62.000 300 110 2 21 316 25 324 4.81e-133 381
Msa0505640 AT5G58400.1 56.550 313 129 5 11 316 13 325 1.25e-118 345
Msa0505640 AT5G58390.1 54.633 313 137 3 9 316 4 316 6.11e-115 335
Msa0505640 AT1G14550.1 51.724 319 146 5 6 316 3 321 3.18e-111 325
Msa0505640 AT1G14540.1 51.613 310 146 3 11 316 6 315 3.11e-108 318
Msa0505640 AT5G06720.1 49.527 317 149 3 11 316 17 333 4.19e-106 313
Msa0505640 AT4G36430.1 46.865 303 151 3 24 316 28 330 1.62e-101 301
Msa0505640 AT2G18150.1 47.138 297 147 3 30 316 40 336 5.72e-101 300
Msa0505640 AT2G18140.1 46.844 301 150 3 26 316 35 335 1.18e-99 296
Msa0505640 AT5G06730.1 45.963 322 159 4 10 316 13 334 5.42e-97 291
Msa0505640 AT5G66390.1 47.176 301 149 3 26 316 33 333 3.95e-96 288
Msa0505640 AT3G50990.1 47.195 303 150 3 24 316 39 341 7.14e-96 287
Msa0505640 AT1G44970.1 48.344 302 145 3 26 316 45 346 2.83e-95 286
Msa0505640 AT4G08770.1 45.659 311 156 4 19 316 17 327 8.69e-94 282
Msa0505640 AT5G19890.1 49.379 322 142 9 9 316 13 327 1.81e-93 281
Msa0505640 AT4G16270.1 50.168 297 136 5 30 316 54 348 7.14e-93 280
Msa0505640 AT4G08780.1 44.695 311 159 4 19 316 17 327 3.65e-92 278
Msa0505640 AT2G38380.1 46.732 306 151 4 23 316 28 333 1.34e-91 276
Msa0505640 AT1G49570.1 47.195 303 148 4 22 312 44 346 2.04e-91 276
Msa0505640 AT1G68850.1 41.692 331 170 7 9 316 5 335 5.52e-90 272
Msa0505640 AT2G38390.1 45.752 306 154 4 23 316 28 333 1.08e-89 272
Msa0505640 AT3G32980.1 44.516 310 159 5 20 316 25 334 1.67e-89 271
Msa0505640 AT3G49110.1 43.871 310 161 5 20 316 27 336 1.35e-87 266
Msa0505640 AT3G49120.1 43.548 310 162 5 20 316 26 335 4.27e-87 265
Msa0505640 AT2G35380.1 47.059 306 147 4 26 316 30 335 9.18e-87 264
Msa0505640 AT2G22420.1 46.179 301 148 6 26 316 23 319 4.06e-86 262
Msa0505640 AT5G19880.1 44.654 318 160 5 13 316 14 329 8.60e-83 253
Msa0505640 AT4G33420.1 45.238 294 153 6 26 316 37 325 1.60e-79 245
Msa0505640 AT4G33420.2 45.238 294 153 6 26 316 84 372 8.75e-79 244
Msa0505640 AT5G64120.1 42.712 295 156 5 30 316 39 328 6.88e-76 236
Msa0505640 AT5G17820.1 42.038 314 163 6 12 316 10 313 9.33e-76 235
Msa0505640 AT5G17820.2 42.038 314 163 6 12 316 63 366 3.18e-75 235
Msa0505640 AT1G05260.1 39.683 315 177 6 13 316 13 325 5.41e-75 233
Msa0505640 AT5G51890.1 41.121 321 170 8 10 316 7 322 5.58e-75 233
Msa0505640 AT5G15180.1 39.091 330 183 7 2 316 3 329 1.05e-74 233
Msa0505640 AT3G01190.1 40.952 315 171 7 12 316 12 321 3.41e-74 231
Msa0505640 AT3G03670.1 40.683 322 180 4 5 316 1 321 8.01e-74 230
Msa0505640 AT4G11290.1 38.125 320 185 6 9 316 8 326 8.26e-74 230
Msa0505640 AT1G05240.1 39.934 303 167 6 22 312 22 321 1.16e-73 230
Msa0505640 AT1G05250.1 39.934 303 167 6 22 312 22 321 1.16e-73 230
Msa0505640 AT1G71695.1 41.946 298 164 6 26 316 44 339 1.83e-73 231
Msa0505640 AT5G40150.1 42.000 300 168 4 23 316 29 328 2.22e-73 229
Msa0505640 AT2G41480.1 39.815 324 176 6 7 316 10 328 2.22e-72 227
Msa0505640 AT5G42180.1 39.252 321 180 6 5 315 1 316 1.32e-71 224
Msa0505640 AT5G14130.1 38.365 318 182 6 10 316 16 330 2.21e-71 224
Msa0505640 AT3G21770.1 39.806 309 173 6 15 312 18 324 2.26e-71 224
Msa0505640 AT5G14130.2 38.365 318 182 6 10 316 57 371 7.31e-71 224
Msa0505640 AT4G26010.1 40.453 309 174 7 12 316 7 309 1.30e-70 221
Msa0505640 AT4G26010.2 40.453 309 174 7 12 316 35 337 2.24e-70 222
Msa0505640 AT3G28200.1 40.468 299 173 4 23 316 18 316 3.00e-70 221
Msa0505640 AT4G33870.1 36.937 333 165 5 26 314 68 399 2.93e-69 221
Msa0505640 AT5G39580.1 41.509 318 168 7 12 316 7 319 1.21e-68 217
Msa0505640 AT5G47000.1 39.441 322 186 5 3 316 10 330 1.04e-66 212
Msa0505640 AT1G34510.1 38.511 309 181 6 11 316 7 309 1.75e-66 211
Msa0505640 AT2G35380.2 45.902 244 119 3 86 316 4 247 3.57e-65 206
Msa0505640 AT4G17690.1 39.414 307 178 5 17 316 17 322 9.73e-65 207
Msa0505640 AT1G77100.1 40.252 318 174 10 11 316 6 319 1.41e-63 204
Msa0505640 AT1G30870.1 39.145 304 163 8 26 316 51 345 5.31e-63 203
Msa0505640 AT4G37530.1 36.928 306 181 4 19 312 20 325 6.54e-63 202
Msa0505640 AT4G31760.1 38.245 319 182 4 9 316 12 326 1.04e-62 202
Msa0505640 AT2G18980.1 38.170 317 178 5 13 316 12 323 1.05e-62 202
Msa0505640 AT4G30170.1 37.460 315 165 7 22 316 23 325 1.01e-60 197
Msa0505640 AT1G24110.1 36.392 316 189 5 12 316 8 322 1.40e-59 194
Msa0505640 AT5G67400.1 36.156 307 184 4 18 312 19 325 3.19e-59 193
Msa0505640 AT4G25980.1 36.102 313 182 7 18 316 18 326 4.76e-59 192
Msa0505640 AT5G64110.1 37.612 335 177 9 3 316 7 330 1.43e-57 189
Msa0505640 AT4G37520.1 36.545 301 179 5 24 312 25 325 3.90e-57 187
Msa0505640 AT2G34060.1 34.925 335 188 8 8 313 10 343 5.94e-57 187
Msa0505640 AT3G49960.1 35.831 307 185 4 18 312 19 325 7.41e-57 187
Msa0505640 AT2G24800.1 38.019 313 162 7 24 316 29 329 6.18e-56 184
Msa0505640 AT4G37520.2 36.213 301 177 6 24 312 25 322 2.48e-55 183
Msa0505640 AT3G17070.1 36.634 303 179 5 26 316 38 339 1.56e-54 181
Msa0505640 AT2G39040.1 36.452 310 179 8 23 316 43 350 2.57e-54 181
Msa0505640 AT5G64100.1 35.522 335 183 9 7 316 5 331 4.02e-54 180
Msa0505640 AT4G37530.2 38.077 260 149 4 19 266 20 279 9.74e-54 177
Msa0505640 AT2G37130.1 34.416 308 193 5 17 316 21 327 1.41e-51 173
Msa0505640 AT5G22410.1 34.169 319 189 10 9 313 11 322 2.22e-51 172
Msa0505640 AT2G37130.2 35.135 296 183 5 29 316 2 296 6.30e-51 171
Msa0505640 AT4G21960.1 34.114 299 187 6 26 316 31 327 2.09e-50 170
Msa0505640 AT2G43480.1 35.065 308 178 8 25 316 34 335 3.83e-49 167
Msa0505640 AT5G24070.1 33.333 297 178 7 34 316 45 335 1.88e-45 157
Msa0505640 AT3G17070.2 36.154 260 154 5 68 316 18 276 7.64e-44 151
Msa0505640 AT5G39580.2 42.466 219 111 6 12 224 7 216 1.38e-42 147
Msa0505640 AT4G25980.2 42.045 176 96 4 18 191 63 234 9.15e-39 139
Msa0505640 AT2G24800.2 44.643 168 87 3 24 189 29 192 7.03e-35 127
Msa0505640 AT4G32320.1 29.183 257 117 8 57 297 114 321 3.58e-17 81.3
Msa0505640 AT3G42570.1 40.206 97 57 1 96 191 53 149 5.20e-16 74.3
Msa0505640 AT1G07890.6 28.634 227 122 7 80 302 59 249 1.28e-13 70.1
Msa0505640 AT1G77490.1 26.587 252 154 7 60 298 106 339 1.37e-13 71.2
Msa0505640 AT1G77490.2 26.587 252 154 7 60 298 106 339 1.52e-13 71.2
Msa0505640 AT1G07890.2 28.700 223 119 7 80 298 59 245 2.12e-13 69.3
Msa0505640 AT1G07890.8 28.700 223 119 7 80 298 59 245 2.12e-13 69.3
Msa0505640 AT1G07890.4 28.700 223 119 7 80 298 59 245 2.12e-13 69.3
Msa0505640 AT1G07890.7 28.700 223 119 7 80 298 59 245 2.12e-13 69.3
Msa0505640 AT1G07890.1 28.700 223 119 7 80 298 59 245 2.12e-13 69.3
Msa0505640 AT1G07890.3 28.700 223 119 7 80 298 59 245 2.12e-13 69.3
Msa0505640 AT1G07890.5 28.700 223 119 7 80 298 59 245 2.12e-13 69.3

Find 64 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTAGTGCTATGGTGAAAA+TGG 0.207916 3_4:+51237166 Msa0505640:CDS
TTTATAATAGAAAGGGCTTT+AGG 0.216313 3_4:-51234949 None:intergenic
AAAGAGATGGTTGTCCTTTC+AGG 0.221896 3_4:+51236546 Msa0505640:CDS
TGGCCGTTATTCCCGGTTAA+AGG 0.231977 3_4:-51237200 None:intergenic
CAATTATCTTCAGATTTCTA+TGG 0.243841 3_4:+51234916 Msa0505640:CDS
TGATATTCCATCCCCTCTTA+TGG 0.297430 3_4:+51236476 Msa0505640:CDS
ACGAATCTGGCCGTTATTCC+CGG 0.335428 3_4:-51237207 None:intergenic
TTATAATAGAAAGGGCTTTA+GGG 0.351671 3_4:-51234948 None:intergenic
TGACAACATTAAAACTCAAT+TGG 0.351916 3_4:+51235878 Msa0505640:CDS
GGAAATCTCAGTCCTTTAAC+CGG 0.390312 3_4:+51237188 Msa0505640:CDS
CAATTGACACCTGGCTTGTC+CGG 0.396982 3_4:-51236880 None:intergenic
TGCGGCAATTAGTACGAATC+TGG 0.400407 3_4:-51237220 None:intergenic
TGAAAGGACAACCATCTCTT+TGG 0.409369 3_4:-51236544 None:intergenic
CCAACATGGAGTGTTGGATT+AGG 0.409859 3_4:+51236411 Msa0505640:CDS
AAATCTGTATAGAAAGTTGT+AGG 0.425690 3_4:-51237143 None:intergenic
AGTTGTAGGACTTGTGCTAT+AGG 0.433383 3_4:-51237129 None:intergenic
CAACGATTTAGTTAACTTTG+CGG 0.433402 3_4:-51237238 None:intergenic
TTGCTATCACCACCTGTACT+TGG 0.442974 3_4:-51236972 None:intergenic
CTGCAGTGTTTATAATAGAA+AGG 0.449549 3_4:-51234957 None:intergenic
GTGCATTGACAAAGCAATCA+TGG 0.468415 3_4:-51235038 None:intergenic
TGCATAGGTGCTCATACAAC+CGG 0.472398 3_4:+51236861 Msa0505640:intron
TGCAGTGTTTATAATAGAAA+GGG 0.475406 3_4:-51234956 None:intergenic
TGATTGTCTCGTTATAAATC+CGG 0.475695 3_4:-51236911 None:intergenic
TGCACCAGCCGACTTCTCTC+CGG 0.477310 3_4:-51235823 None:intergenic
CAAAGCAATCATGGAAATGA+AGG 0.492608 3_4:-51235029 None:intergenic
GCTAGTGCTATGGTGAAAAT+GGG 0.496755 3_4:+51237167 Msa0505640:CDS
AGGTCACTAAGATCCATAAG+AGG 0.497849 3_4:-51236489 None:intergenic
GGCAGTATCTTTACTAGCAG+TGG 0.501994 3_4:-51236448 None:intergenic
CAATTGGAAACTGCTTGTCC+TGG 0.510442 3_4:+51235894 Msa0505640:CDS
CTCAGTTGGGTGGTCCAACA+TGG 0.519896 3_4:+51236397 Msa0505640:intron
AGTCCTTTAACCGGGAATAA+CGG 0.521082 3_4:+51237197 Msa0505640:CDS
AAATCAAACTGTCCAAGTAC+AGG 0.528486 3_4:+51236960 Msa0505640:CDS
GGTGTCAATTGTTCAGAGGC+CGG 0.528795 3_4:+51236892 Msa0505640:CDS
CTCATACAACCGGACAAGCC+AGG 0.537911 3_4:+51236871 Msa0505640:CDS
AGGGGATGGAATATCATTAG+TGG 0.539253 3_4:-51236469 None:intergenic
CTAAGATCCATAAGAGGGGA+TGG 0.539670 3_4:-51236483 None:intergenic
AATTTACTATCTCAGTTGGG+TGG 0.542773 3_4:+51236387 Msa0505640:intron
GATGACACTTCAAGCTTCAC+CGG 0.544535 3_4:+51235804 Msa0505640:CDS
GAAATATGAGGTTACCTGAA+AGG 0.547360 3_4:-51236560 None:intergenic
GGTGGTCCAACATGGAGTGT+TGG 0.550979 3_4:+51236405 Msa0505640:CDS
AAGGACAACCATCTCTTTGG+TGG 0.552824 3_4:-51236541 None:intergenic
GGGATTTACCACCAAAGAGA+TGG 0.564115 3_4:+51236533 Msa0505640:CDS
GCCTCTGAACAATTGACACC+TGG 0.564734 3_4:-51236889 None:intergenic
AAGCTTCACCGGAGAGAAGT+CGG 0.573162 3_4:+51235815 Msa0505640:CDS
TTCACCGGAGAGAAGTCGGC+TGG 0.575709 3_4:+51235819 Msa0505640:CDS
TCAGCACAAGAAACAACTCC+AGG 0.586737 3_4:-51235912 None:intergenic
GGTCACTAAGATCCATAAGA+GGG 0.589820 3_4:-51236488 None:intergenic
TGTTTCTAAAGAACATCGCA+TGG 0.595897 3_4:+51234990 Msa0505640:CDS
AGATAATTGAGCAGAGACCA+TGG 0.600081 3_4:-51234902 None:intergenic
CCTAATCCAACACTCCATGT+TGG 0.600465 3_4:-51236411 None:intergenic
GATCAACAACTCTTCAGTGG+TGG 0.610710 3_4:+51237083 Msa0505640:CDS
AGCATTGTCAAATAGCACAT+TGG 0.616357 3_4:-51237018 None:intergenic
TTGTGACATCAAGTGAGGTA+AGG 0.618359 3_4:-51236995 None:intergenic
GCAAATGTAAATTCTCTCAG+AGG 0.619141 3_4:+51235843 Msa0505640:CDS
TGCTCGTGATGCTGTTGTAG+CGG 0.635557 3_4:+51235950 Msa0505640:CDS
GCCAGGTGTCAATTGTTCAG+AGG 0.643723 3_4:+51236888 Msa0505640:CDS
GAAATCTCAGTCCTTTAACC+GGG 0.649187 3_4:+51237189 Msa0505640:CDS
TCTGATCAACAACTCTTCAG+TGG 0.652175 3_4:+51237080 Msa0505640:CDS
TCAAACTGTCCAAGTACAGG+TGG 0.661430 3_4:+51236963 Msa0505640:CDS
GTTTCTAAAGAACATCGCAT+GGG 0.661595 3_4:+51234991 Msa0505640:CDS
AGCAATCATGGAAATGAAGG+CGG 0.675421 3_4:-51235026 None:intergenic
ATTGGTTGTGACATCAAGTG+AGG 0.686079 3_4:-51237000 None:intergenic
GTCACTAAGATCCATAAGAG+GGG 0.687769 3_4:-51236487 None:intergenic
TGGACAGTTTGATTTCACTG+AGG 0.727605 3_4:-51236952 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTTGGTTTTATATT+TGG + chr3_4:51235253-51235272 Msa0505640:intron 10.0%
!!! AAATATTTAATTTATCATCT+AGG - chr3_4:51235518-51235537 None:intergenic 10.0%
!!! AGAATTTTTTTTTTGTTAAT+AGG + chr3_4:51236121-51236140 Msa0505640:intron 10.0%
!!! AAATTATCTAAAACTTTTTA+AGG - chr3_4:51236335-51236354 None:intergenic 10.0%
!! TTAATTAATTAAGAAATATG+AGG - chr3_4:51236575-51236594 None:intergenic 10.0%
!!! AAAATTTTTGGTTTTATATT+TGG + chr3_4:51235253-51235272 Msa0505640:intron 10.0%
!!! AAATATTTAATTTATCATCT+AGG - chr3_4:51235518-51235537 None:intergenic 10.0%
!!! AGAATTTTTTTTTTGTTAAT+AGG + chr3_4:51236121-51236140 Msa0505640:intron 10.0%
!!! AAATTATCTAAAACTTTTTA+AGG - chr3_4:51236335-51236354 None:intergenic 10.0%
!! TTAATTAATTAAGAAATATG+AGG - chr3_4:51236575-51236594 None:intergenic 10.0%
!! TCAAAATTCACTATATTTAT+CGG - chr3_4:51235190-51235209 None:intergenic 15.0%
!!! ACATCCTATTTTATTTTTTA+GGG - chr3_4:51235220-51235239 None:intergenic 15.0%
!!! AACATCCTATTTTATTTTTT+AGG - chr3_4:51235221-51235240 None:intergenic 15.0%
!! CATTAATATGAACATAAATT+AGG - chr3_4:51235288-51235307 None:intergenic 15.0%
!! ATTTAACAAATTGAAATATG+TGG - chr3_4:51236179-51236198 None:intergenic 15.0%
!! AAAAAATGTTAGTTAAAGTT+TGG - chr3_4:51236361-51236380 None:intergenic 15.0%
!! AAAAACTTGATCTTAATTAT+GGG - chr3_4:51236603-51236622 None:intergenic 15.0%
!! TAAAAACTTGATCTTAATTA+TGG - chr3_4:51236604-51236623 None:intergenic 15.0%
!!! AAGATCAAGTTTTTAATATA+AGG + chr3_4:51236609-51236628 Msa0505640:intron 15.0%
!! TCAAAATTCACTATATTTAT+CGG - chr3_4:51235190-51235209 None:intergenic 15.0%
!!! ACATCCTATTTTATTTTTTA+GGG - chr3_4:51235220-51235239 None:intergenic 15.0%
!!! AACATCCTATTTTATTTTTT+AGG - chr3_4:51235221-51235240 None:intergenic 15.0%
!! CATTAATATGAACATAAATT+AGG - chr3_4:51235288-51235307 None:intergenic 15.0%
!! ATTTAACAAATTGAAATATG+TGG - chr3_4:51236179-51236198 None:intergenic 15.0%
!! AAAAAATGTTAGTTAAAGTT+TGG - chr3_4:51236361-51236380 None:intergenic 15.0%
!! AAAAACTTGATCTTAATTAT+GGG - chr3_4:51236603-51236622 None:intergenic 15.0%
!! TAAAAACTTGATCTTAATTA+TGG - chr3_4:51236604-51236623 None:intergenic 15.0%
!!! AAGATCAAGTTTTTAATATA+AGG + chr3_4:51236609-51236628 Msa0505640:intron 15.0%
!! ACAACATAAAGAAGAAAAAT+AGG - chr3_4:51234870-51234889 None:intergenic 20.0%
!!! ATAAAACCAAAAATTTTGTG+AGG - chr3_4:51235250-51235269 None:intergenic 20.0%
!! ATAAAACGAAAAATGTTATG+AGG + chr3_4:51235441-51235460 Msa0505640:intron 20.0%
!!! TTTTTTTCTTTTAAAGAGTC+TGG + chr3_4:51235980-51235999 Msa0505640:intron 20.0%
!!! ACATTAAGTCCTTTTAAATA+GGG + chr3_4:51236016-51236035 Msa0505640:intron 20.0%
!! AAAACTTGATCTTAATTATG+GGG - chr3_4:51236602-51236621 None:intergenic 20.0%
!! TATCATTACTCTCAATAAAA+AGG - chr3_4:51236783-51236802 None:intergenic 20.0%
!! ATGATATTTGTACAACTATT+TGG + chr3_4:51236797-51236816 Msa0505640:intron 20.0%
!!! GATTTTTTGTTTTGAAAACT+TGG + chr3_4:51236837-51236856 Msa0505640:intron 20.0%
!! AAGAATCTAGTTAACAAAAA+AGG + chr3_4:51237047-51237066 Msa0505640:CDS 20.0%
!! ACAACATAAAGAAGAAAAAT+AGG - chr3_4:51234870-51234889 None:intergenic 20.0%
!!! ATAAAACCAAAAATTTTGTG+AGG - chr3_4:51235250-51235269 None:intergenic 20.0%
!! ATAAAACGAAAAATGTTATG+AGG + chr3_4:51235441-51235460 Msa0505640:intron 20.0%
!!! TTTTTTTCTTTTAAAGAGTC+TGG + chr3_4:51235980-51235999 Msa0505640:intron 20.0%
!!! ACATTAAGTCCTTTTAAATA+GGG + chr3_4:51236016-51236035 Msa0505640:intron 20.0%
!! AAAACTTGATCTTAATTATG+GGG - chr3_4:51236602-51236621 None:intergenic 20.0%
!! TATCATTACTCTCAATAAAA+AGG - chr3_4:51236783-51236802 None:intergenic 20.0%
!! ATGATATTTGTACAACTATT+TGG + chr3_4:51236797-51236816 Msa0505640:intron 20.0%
!!! GATTTTTTGTTTTGAAAACT+TGG + chr3_4:51236837-51236856 Msa0505640:intron 20.0%
!! AAGAATCTAGTTAACAAAAA+AGG + chr3_4:51237047-51237066 Msa0505640:CDS 20.0%
! CAATTATCTTCAGATTTCTA+TGG + chr3_4:51234916-51234935 Msa0505640:CDS 25.0%
! TTATAATAGAAAGGGCTTTA+GGG - chr3_4:51234951-51234970 None:intergenic 25.0%
! TTTATAATAGAAAGGGCTTT+AGG - chr3_4:51234952-51234971 None:intergenic 25.0%
! TGCAGTGTTTATAATAGAAA+GGG - chr3_4:51234959-51234978 None:intergenic 25.0%
! TCGTCCCTAAAAAATAAAAT+AGG + chr3_4:51235213-51235232 Msa0505640:intron 25.0%
!! TTTCATCCTCACAAAATTTT+TGG + chr3_4:51235241-51235260 Msa0505640:intron 25.0%
! TGAACATAAATTAGGCATTA+AGG - chr3_4:51235280-51235299 None:intergenic 25.0%
! CGCATCAAACATTTATATTA+CGG + chr3_4:51235612-51235631 Msa0505640:intron 25.0%
!!! ATGATGATTTTATAACTTGC+AGG + chr3_4:51235758-51235777 Msa0505640:intron 25.0%
!!! TGATGATTTTATAACTTGCA+GGG + chr3_4:51235759-51235778 Msa0505640:intron 25.0%
! TGACAACATTAAAACTCAAT+TGG + chr3_4:51235878-51235897 Msa0505640:CDS 25.0%
!! CACATTAAGTCCTTTTAAAT+AGG + chr3_4:51236015-51236034 Msa0505640:intron 25.0%
! ACTGTAATTCCCTATTTAAA+AGG - chr3_4:51236028-51236047 None:intergenic 25.0%
! ATTCACTATAGTACTAAGAT+TGG + chr3_4:51236248-51236267 Msa0505640:intron 25.0%
! TTCAATTTACTATCTCAGTT+GGG + chr3_4:51236384-51236403 Msa0505640:intron 25.0%
!!! ATATCTGCTTTTTCAAACAA+GGG + chr3_4:51236513-51236532 Msa0505640:CDS 25.0%
! AAATCTGTATAGAAAGTTGT+AGG - chr3_4:51237146-51237165 None:intergenic 25.0%
! CAATTATCTTCAGATTTCTA+TGG + chr3_4:51234916-51234935 Msa0505640:CDS 25.0%
! TTATAATAGAAAGGGCTTTA+GGG - chr3_4:51234951-51234970 None:intergenic 25.0%
! TTTATAATAGAAAGGGCTTT+AGG - chr3_4:51234952-51234971 None:intergenic 25.0%
! TGCAGTGTTTATAATAGAAA+GGG - chr3_4:51234959-51234978 None:intergenic 25.0%
! TCGTCCCTAAAAAATAAAAT+AGG + chr3_4:51235213-51235232 Msa0505640:intron 25.0%
!! TTTCATCCTCACAAAATTTT+TGG + chr3_4:51235241-51235260 Msa0505640:intron 25.0%
! TGAACATAAATTAGGCATTA+AGG - chr3_4:51235280-51235299 None:intergenic 25.0%
! CGCATCAAACATTTATATTA+CGG + chr3_4:51235612-51235631 Msa0505640:intron 25.0%
!!! ATGATGATTTTATAACTTGC+AGG + chr3_4:51235758-51235777 Msa0505640:intron 25.0%
!!! TGATGATTTTATAACTTGCA+GGG + chr3_4:51235759-51235778 Msa0505640:intron 25.0%
! TGACAACATTAAAACTCAAT+TGG + chr3_4:51235878-51235897 Msa0505640:CDS 25.0%
!! CACATTAAGTCCTTTTAAAT+AGG + chr3_4:51236015-51236034 Msa0505640:intron 25.0%
! ACTGTAATTCCCTATTTAAA+AGG - chr3_4:51236028-51236047 None:intergenic 25.0%
! ATTCACTATAGTACTAAGAT+TGG + chr3_4:51236248-51236267 Msa0505640:intron 25.0%
! TTCAATTTACTATCTCAGTT+GGG + chr3_4:51236384-51236403 Msa0505640:intron 25.0%
!!! ATATCTGCTTTTTCAAACAA+GGG + chr3_4:51236513-51236532 Msa0505640:CDS 25.0%
! AAATCTGTATAGAAAGTTGT+AGG - chr3_4:51237146-51237165 None:intergenic 25.0%
CTGCAGTGTTTATAATAGAA+AGG - chr3_4:51234960-51234979 None:intergenic 30.0%
!! TTTTCTTTTAAAGAGTCTGG+CGG + chr3_4:51235983-51236002 Msa0505640:intron 30.0%
GCAAGGATATTTGATATGTT+AGG - chr3_4:51236064-51236083 None:intergenic 30.0%
ATACCTGTAAATAGTACTCT+AGG + chr3_4:51236275-51236294 Msa0505640:intron 30.0%
GTTCAATTTACTATCTCAGT+TGG + chr3_4:51236383-51236402 Msa0505640:intron 30.0%
TGTTTGAAAAAGCAGATATG+AGG - chr3_4:51236512-51236531 None:intergenic 30.0%
!!! CATATCTGCTTTTTCAAACA+AGG + chr3_4:51236512-51236531 Msa0505640:CDS 30.0%
TTGAAAACGTAGTTACAATG+CGG + chr3_4:51236706-51236725 Msa0505640:intron 30.0%
!! TTTTGAAAACTTGGATGCAT+AGG + chr3_4:51236846-51236865 Msa0505640:intron 30.0%
TGATTGTCTCGTTATAAATC+CGG - chr3_4:51236914-51236933 None:intergenic 30.0%
CTGCAGTGTTTATAATAGAA+AGG - chr3_4:51234960-51234979 None:intergenic 30.0%
!! TTTTCTTTTAAAGAGTCTGG+CGG + chr3_4:51235983-51236002 Msa0505640:intron 30.0%
GCAAGGATATTTGATATGTT+AGG - chr3_4:51236064-51236083 None:intergenic 30.0%
ATACCTGTAAATAGTACTCT+AGG + chr3_4:51236275-51236294 Msa0505640:intron 30.0%
GTTCAATTTACTATCTCAGT+TGG + chr3_4:51236383-51236402 Msa0505640:intron 30.0%
TGTTTGAAAAAGCAGATATG+AGG - chr3_4:51236512-51236531 None:intergenic 30.0%
!!! CATATCTGCTTTTTCAAACA+AGG + chr3_4:51236512-51236531 Msa0505640:CDS 30.0%
TTGAAAACGTAGTTACAATG+CGG + chr3_4:51236706-51236725 Msa0505640:intron 30.0%
!! TTTTGAAAACTTGGATGCAT+AGG + chr3_4:51236846-51236865 Msa0505640:intron 30.0%
TGATTGTCTCGTTATAAATC+CGG - chr3_4:51236914-51236933 None:intergenic 30.0%
! TGTTTCTAAAGAACATCGCA+TGG + chr3_4:51234990-51235009 Msa0505640:CDS 35.0%
! GTTTCTAAAGAACATCGCAT+GGG + chr3_4:51234991-51235010 Msa0505640:CDS 35.0%
CAAAGCAATCATGGAAATGA+AGG - chr3_4:51235032-51235051 None:intergenic 35.0%
GCAAATGTAAATTCTCTCAG+AGG + chr3_4:51235843-51235862 Msa0505640:CDS 35.0%
AGATGGCAATAGATATTGCA+AGG - chr3_4:51236081-51236100 None:intergenic 35.0%
TTCCATAAGTACAACTCAGA+TGG - chr3_4:51236098-51236117 None:intergenic 35.0%
! CAACCTAGAGTACTATTTAC+AGG - chr3_4:51236281-51236300 None:intergenic 35.0%
AATTTACTATCTCAGTTGGG+TGG + chr3_4:51236387-51236406 Msa0505640:intron 35.0%
GAAATATGAGGTTACCTGAA+AGG - chr3_4:51236563-51236582 None:intergenic 35.0%
CAGAGAATTGCAATCAAATG+TGG + chr3_4:51236666-51236685 Msa0505640:intron 35.0%
TTTCAATGCGACTACAATTG+AGG - chr3_4:51236692-51236711 None:intergenic 35.0%
AAATCAAACTGTCCAAGTAC+AGG + chr3_4:51236960-51236979 Msa0505640:CDS 35.0%
AGCATTGTCAAATAGCACAT+TGG - chr3_4:51237021-51237040 None:intergenic 35.0%
! TACAGATTTTGCTAGTGCTA+TGG + chr3_4:51237157-51237176 Msa0505640:CDS 35.0%
! TGTTTCTAAAGAACATCGCA+TGG + chr3_4:51234990-51235009 Msa0505640:CDS 35.0%
! GTTTCTAAAGAACATCGCAT+GGG + chr3_4:51234991-51235010 Msa0505640:CDS 35.0%
CAAAGCAATCATGGAAATGA+AGG - chr3_4:51235032-51235051 None:intergenic 35.0%
GCAAATGTAAATTCTCTCAG+AGG + chr3_4:51235843-51235862 Msa0505640:CDS 35.0%
AGATGGCAATAGATATTGCA+AGG - chr3_4:51236081-51236100 None:intergenic 35.0%
TTCCATAAGTACAACTCAGA+TGG - chr3_4:51236098-51236117 None:intergenic 35.0%
! CAACCTAGAGTACTATTTAC+AGG - chr3_4:51236281-51236300 None:intergenic 35.0%
AATTTACTATCTCAGTTGGG+TGG + chr3_4:51236387-51236406 Msa0505640:intron 35.0%
GAAATATGAGGTTACCTGAA+AGG - chr3_4:51236563-51236582 None:intergenic 35.0%
CAGAGAATTGCAATCAAATG+TGG + chr3_4:51236666-51236685 Msa0505640:intron 35.0%
TTTCAATGCGACTACAATTG+AGG - chr3_4:51236692-51236711 None:intergenic 35.0%
AAATCAAACTGTCCAAGTAC+AGG + chr3_4:51236960-51236979 Msa0505640:CDS 35.0%
AGCATTGTCAAATAGCACAT+TGG - chr3_4:51237021-51237040 None:intergenic 35.0%
! TACAGATTTTGCTAGTGCTA+TGG + chr3_4:51237157-51237176 Msa0505640:CDS 35.0%
!! GTTGTTTTCGTTCTTGTCCA+TGG + chr3_4:51234885-51234904 Msa0505640:CDS 40.0%
AGATAATTGAGCAGAGACCA+TGG - chr3_4:51234905-51234924 None:intergenic 40.0%
AGCAATCATGGAAATGAAGG+CGG - chr3_4:51235029-51235048 None:intergenic 40.0%
! GTGCATTGACAAAGCAATCA+TGG - chr3_4:51235041-51235060 None:intergenic 40.0%
CACACATGAATGTTCATGCA+AGG - chr3_4:51235494-51235513 None:intergenic 40.0%
AGGGAATTACAGTCTCAAAC+CGG + chr3_4:51236035-51236054 Msa0505640:intron 40.0%
TATTTGATATGTTAGGCCGC+CGG - chr3_4:51236057-51236076 None:intergenic 40.0%
TGCCATCTGAGTTGTACTTA+TGG + chr3_4:51236093-51236112 Msa0505640:intron 40.0%
AGGGGATGGAATATCATTAG+TGG - chr3_4:51236472-51236491 None:intergenic 40.0%
TGATATTCCATCCCCTCTTA+TGG + chr3_4:51236476-51236495 Msa0505640:CDS 40.0%
GTCACTAAGATCCATAAGAG+GGG - chr3_4:51236490-51236509 None:intergenic 40.0%
GGTCACTAAGATCCATAAGA+GGG - chr3_4:51236491-51236510 None:intergenic 40.0%
AGGTCACTAAGATCCATAAG+AGG - chr3_4:51236492-51236511 None:intergenic 40.0%
TGAAAGGACAACCATCTCTT+TGG - chr3_4:51236547-51236566 None:intergenic 40.0%
AAAGAGATGGTTGTCCTTTC+AGG + chr3_4:51236546-51236565 Msa0505640:CDS 40.0%
! TGGACAGTTTGATTTCACTG+AGG - chr3_4:51236955-51236974 None:intergenic 40.0%
TTGTGACATCAAGTGAGGTA+AGG - chr3_4:51236998-51237017 None:intergenic 40.0%
ATTGGTTGTGACATCAAGTG+AGG - chr3_4:51237003-51237022 None:intergenic 40.0%
TCTGATCAACAACTCTTCAG+TGG + chr3_4:51237080-51237099 Msa0505640:CDS 40.0%
AGTTGTAGGACTTGTGCTAT+AGG - chr3_4:51237132-51237151 None:intergenic 40.0%
TGCTAGTGCTATGGTGAAAA+TGG + chr3_4:51237166-51237185 Msa0505640:CDS 40.0%
GCTAGTGCTATGGTGAAAAT+GGG + chr3_4:51237167-51237186 Msa0505640:CDS 40.0%
GGAAATCTCAGTCCTTTAAC+CGG + chr3_4:51237188-51237207 Msa0505640:CDS 40.0%
GAAATCTCAGTCCTTTAACC+GGG + chr3_4:51237189-51237208 Msa0505640:CDS 40.0%
AGTCCTTTAACCGGGAATAA+CGG + chr3_4:51237197-51237216 Msa0505640:CDS 40.0%
!! GTTGTTTTCGTTCTTGTCCA+TGG + chr3_4:51234885-51234904 Msa0505640:CDS 40.0%
AGATAATTGAGCAGAGACCA+TGG - chr3_4:51234905-51234924 None:intergenic 40.0%
AGCAATCATGGAAATGAAGG+CGG - chr3_4:51235029-51235048 None:intergenic 40.0%
! GTGCATTGACAAAGCAATCA+TGG - chr3_4:51235041-51235060 None:intergenic 40.0%
CACACATGAATGTTCATGCA+AGG - chr3_4:51235494-51235513 None:intergenic 40.0%
AGGGAATTACAGTCTCAAAC+CGG + chr3_4:51236035-51236054 Msa0505640:intron 40.0%
TATTTGATATGTTAGGCCGC+CGG - chr3_4:51236057-51236076 None:intergenic 40.0%
TGCCATCTGAGTTGTACTTA+TGG + chr3_4:51236093-51236112 Msa0505640:intron 40.0%
AGGGGATGGAATATCATTAG+TGG - chr3_4:51236472-51236491 None:intergenic 40.0%
TGATATTCCATCCCCTCTTA+TGG + chr3_4:51236476-51236495 Msa0505640:CDS 40.0%
GTCACTAAGATCCATAAGAG+GGG - chr3_4:51236490-51236509 None:intergenic 40.0%
GGTCACTAAGATCCATAAGA+GGG - chr3_4:51236491-51236510 None:intergenic 40.0%
AGGTCACTAAGATCCATAAG+AGG - chr3_4:51236492-51236511 None:intergenic 40.0%
TGAAAGGACAACCATCTCTT+TGG - chr3_4:51236547-51236566 None:intergenic 40.0%
AAAGAGATGGTTGTCCTTTC+AGG + chr3_4:51236546-51236565 Msa0505640:CDS 40.0%
! TGGACAGTTTGATTTCACTG+AGG - chr3_4:51236955-51236974 None:intergenic 40.0%
TTGTGACATCAAGTGAGGTA+AGG - chr3_4:51236998-51237017 None:intergenic 40.0%
ATTGGTTGTGACATCAAGTG+AGG - chr3_4:51237003-51237022 None:intergenic 40.0%
TCTGATCAACAACTCTTCAG+TGG + chr3_4:51237080-51237099 Msa0505640:CDS 40.0%
AGTTGTAGGACTTGTGCTAT+AGG - chr3_4:51237132-51237151 None:intergenic 40.0%
TGCTAGTGCTATGGTGAAAA+TGG + chr3_4:51237166-51237185 Msa0505640:CDS 40.0%
GCTAGTGCTATGGTGAAAAT+GGG + chr3_4:51237167-51237186 Msa0505640:CDS 40.0%
GGAAATCTCAGTCCTTTAAC+CGG + chr3_4:51237188-51237207 Msa0505640:CDS 40.0%
GAAATCTCAGTCCTTTAACC+GGG + chr3_4:51237189-51237208 Msa0505640:CDS 40.0%
AGTCCTTTAACCGGGAATAA+CGG + chr3_4:51237197-51237216 Msa0505640:CDS 40.0%
GCAGTTTGCAGCTACAATTG+TGG - chr3_4:51235713-51235732 None:intergenic 45.0%
GATGACACTTCAAGCTTCAC+CGG + chr3_4:51235804-51235823 Msa0505640:CDS 45.0%
CAATTGGAAACTGCTTGTCC+TGG + chr3_4:51235894-51235913 Msa0505640:CDS 45.0%
TCAGCACAAGAAACAACTCC+AGG - chr3_4:51235915-51235934 None:intergenic 45.0%
GAATTACAGTCTCAAACCGG+CGG + chr3_4:51236038-51236057 Msa0505640:intron 45.0%
CCTAATCCAACACTCCATGT+TGG - chr3_4:51236414-51236433 None:intergenic 45.0%
!! CCAACATGGAGTGTTGGATT+AGG + chr3_4:51236411-51236430 Msa0505640:CDS 45.0%
GGCAGTATCTTTACTAGCAG+TGG - chr3_4:51236451-51236470 None:intergenic 45.0%
CTAAGATCCATAAGAGGGGA+TGG - chr3_4:51236486-51236505 None:intergenic 45.0%
GGGATTTACCACCAAAGAGA+TGG + chr3_4:51236533-51236552 Msa0505640:CDS 45.0%
AAGGACAACCATCTCTTTGG+TGG - chr3_4:51236544-51236563 None:intergenic 45.0%
AGTGTTTGTTTCGCGATCCT+AGG + chr3_4:51236639-51236658 Msa0505640:intron 45.0%
TGCATAGGTGCTCATACAAC+CGG + chr3_4:51236861-51236880 Msa0505640:intron 45.0%
TCAAACTGTCCAAGTACAGG+TGG + chr3_4:51236963-51236982 Msa0505640:CDS 45.0%
TTGCTATCACCACCTGTACT+TGG - chr3_4:51236975-51236994 None:intergenic 45.0%
GATCAACAACTCTTCAGTGG+TGG + chr3_4:51237083-51237102 Msa0505640:CDS 45.0%
TGCGGCAATTAGTACGAATC+TGG - chr3_4:51237223-51237242 None:intergenic 45.0%
GCAGTTTGCAGCTACAATTG+TGG - chr3_4:51235713-51235732 None:intergenic 45.0%
GATGACACTTCAAGCTTCAC+CGG + chr3_4:51235804-51235823 Msa0505640:CDS 45.0%
CAATTGGAAACTGCTTGTCC+TGG + chr3_4:51235894-51235913 Msa0505640:CDS 45.0%
TCAGCACAAGAAACAACTCC+AGG - chr3_4:51235915-51235934 None:intergenic 45.0%
GAATTACAGTCTCAAACCGG+CGG + chr3_4:51236038-51236057 Msa0505640:intron 45.0%
CCTAATCCAACACTCCATGT+TGG - chr3_4:51236414-51236433 None:intergenic 45.0%
!! CCAACATGGAGTGTTGGATT+AGG + chr3_4:51236411-51236430 Msa0505640:CDS 45.0%
GGCAGTATCTTTACTAGCAG+TGG - chr3_4:51236451-51236470 None:intergenic 45.0%
CTAAGATCCATAAGAGGGGA+TGG - chr3_4:51236486-51236505 None:intergenic 45.0%
GGGATTTACCACCAAAGAGA+TGG + chr3_4:51236533-51236552 Msa0505640:CDS 45.0%
AAGGACAACCATCTCTTTGG+TGG - chr3_4:51236544-51236563 None:intergenic 45.0%
AGTGTTTGTTTCGCGATCCT+AGG + chr3_4:51236639-51236658 Msa0505640:intron 45.0%
TGCATAGGTGCTCATACAAC+CGG + chr3_4:51236861-51236880 Msa0505640:intron 45.0%
TCAAACTGTCCAAGTACAGG+TGG + chr3_4:51236963-51236982 Msa0505640:CDS 45.0%
TTGCTATCACCACCTGTACT+TGG - chr3_4:51236975-51236994 None:intergenic 45.0%
GATCAACAACTCTTCAGTGG+TGG + chr3_4:51237083-51237102 Msa0505640:CDS 45.0%
TGCGGCAATTAGTACGAATC+TGG - chr3_4:51237223-51237242 None:intergenic 45.0%
GACAAATGCAGCTGCAGTTG+CGG + chr3_4:51235644-51235663 Msa0505640:intron 50.0%
AAGCTTCACCGGAGAGAAGT+CGG + chr3_4:51235815-51235834 Msa0505640:CDS 50.0%
TGCTCGTGATGCTGTTGTAG+CGG + chr3_4:51235950-51235969 Msa0505640:CDS 50.0%
TTGCAATTCTCTGCGAGCCT+AGG - chr3_4:51236659-51236678 None:intergenic 50.0%
! CAATTGACACCTGGCTTGTC+CGG - chr3_4:51236883-51236902 None:intergenic 50.0%
GCCAGGTGTCAATTGTTCAG+AGG + chr3_4:51236888-51236907 Msa0505640:CDS 50.0%
GCCTCTGAACAATTGACACC+TGG - chr3_4:51236892-51236911 None:intergenic 50.0%
GGTGTCAATTGTTCAGAGGC+CGG + chr3_4:51236892-51236911 Msa0505640:CDS 50.0%
TGGCCGTTATTCCCGGTTAA+AGG - chr3_4:51237203-51237222 None:intergenic 50.0%
ACGAATCTGGCCGTTATTCC+CGG - chr3_4:51237210-51237229 None:intergenic 50.0%
GACAAATGCAGCTGCAGTTG+CGG + chr3_4:51235644-51235663 Msa0505640:intron 50.0%
AAGCTTCACCGGAGAGAAGT+CGG + chr3_4:51235815-51235834 Msa0505640:CDS 50.0%
TGCTCGTGATGCTGTTGTAG+CGG + chr3_4:51235950-51235969 Msa0505640:CDS 50.0%
TTGCAATTCTCTGCGAGCCT+AGG - chr3_4:51236659-51236678 None:intergenic 50.0%
! CAATTGACACCTGGCTTGTC+CGG - chr3_4:51236883-51236902 None:intergenic 50.0%
GCCAGGTGTCAATTGTTCAG+AGG + chr3_4:51236888-51236907 Msa0505640:CDS 50.0%
GCCTCTGAACAATTGACACC+TGG - chr3_4:51236892-51236911 None:intergenic 50.0%
GGTGTCAATTGTTCAGAGGC+CGG + chr3_4:51236892-51236911 Msa0505640:CDS 50.0%
TGGCCGTTATTCCCGGTTAA+AGG - chr3_4:51237203-51237222 None:intergenic 50.0%
ACGAATCTGGCCGTTATTCC+CGG - chr3_4:51237210-51237229 None:intergenic 50.0%
ATGCAGCTGCAGTTGCGGTT+AGG + chr3_4:51235649-51235668 Msa0505640:intron 55.0%
CTCAGTTGGGTGGTCCAACA+TGG + chr3_4:51236397-51236416 Msa0505640:intron 55.0%
GGTGGTCCAACATGGAGTGT+TGG + chr3_4:51236405-51236424 Msa0505640:CDS 55.0%
CTCATACAACCGGACAAGCC+AGG + chr3_4:51236871-51236890 Msa0505640:CDS 55.0%
ATGCAGCTGCAGTTGCGGTT+AGG + chr3_4:51235649-51235668 Msa0505640:intron 55.0%
CTCAGTTGGGTGGTCCAACA+TGG + chr3_4:51236397-51236416 Msa0505640:intron 55.0%
GGTGGTCCAACATGGAGTGT+TGG + chr3_4:51236405-51236424 Msa0505640:CDS 55.0%
CTCATACAACCGGACAAGCC+AGG + chr3_4:51236871-51236890 Msa0505640:CDS 55.0%
TTCACCGGAGAGAAGTCGGC+TGG + chr3_4:51235819-51235838 Msa0505640:CDS 60.0%
! TGCACCAGCCGACTTCTCTC+CGG - chr3_4:51235826-51235845 None:intergenic 60.0%
TTCACCGGAGAGAAGTCGGC+TGG + chr3_4:51235819-51235838 Msa0505640:CDS 60.0%
! TGCACCAGCCGACTTCTCTC+CGG - chr3_4:51235826-51235845 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 51234844 51237253 51234844 ID=Msa0505640;Name=Msa0505640
chr3_4 mRNA 51234844 51237253 51234844 ID=Msa0505640-mRNA-1;Parent=Msa0505640;Name=Msa0505640-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|4|0|316
chr3_4 exon 51234844 51235050 51234844 ID=Msa0505640-mRNA-1:exon:11178;Parent=Msa0505640-mRNA-1
chr3_4 exon 51235780 51235971 51235780 ID=Msa0505640-mRNA-1:exon:11179;Parent=Msa0505640-mRNA-1
chr3_4 exon 51236402 51236567 51236402 ID=Msa0505640-mRNA-1:exon:11180;Parent=Msa0505640-mRNA-1
chr3_4 exon 51236868 51237253 51236868 ID=Msa0505640-mRNA-1:exon:11181;Parent=Msa0505640-mRNA-1
chr3_4 CDS 51234844 51235050 51234844 ID=Msa0505640-mRNA-1:cds;Parent=Msa0505640-mRNA-1
chr3_4 CDS 51235780 51235971 51235780 ID=Msa0505640-mRNA-1:cds;Parent=Msa0505640-mRNA-1
chr3_4 CDS 51236402 51236567 51236402 ID=Msa0505640-mRNA-1:cds;Parent=Msa0505640-mRNA-1
chr3_4 CDS 51236868 51237253 51236868 ID=Msa0505640-mRNA-1:cds;Parent=Msa0505640-mRNA-1
Gene Sequence

>Msa0505640

ATGGCTTTCAACATGCATTATAACCTATTTTTCTTCTTTATGTTGTTTTCGTTCTTGTCCATGGTCTCTGCTCAATTATCTTCAGATTTCTATGGAACAACTTGCCCTAAAGCCCTTTCTATTATAAACACTGCAGTGTGCAGTGCTGTTTCTAAAGAACATCGCATGGGTGCTTCATTGCTCCGCCTTCATTTCCATGATTGCTTTGGATGTGATGCATCAGTTCTATTAGATGACACTTCAAGCTTCACCGGAGAGAAGTCGGCTGGTGCAAATGTAAATTCTCTCAGAGGTTTTGATGTGATTGACAACATTAAAACTCAATTGGAAACTGCTTGTCCTGGAGTTGTTTCTTGTGCTGATATTGTTGCAGCTGCTGCTCGTGATGCTGTTGTAGCGTTGGGTGGTCCAACATGGAGTGTTGGATTAGGTAGAAGAGATTCAACCACTGCTAGTAAAGATACTGCCACTAATGATATTCCATCCCCTCTTATGGATCTTAGTGACCTCATATCTGCTTTTTCAAACAAGGGATTTACCACCAAAGAGATGGTTGTCCTTTCAGGTGCTCATACAACCGGACAAGCCAGGTGTCAATTGTTCAGAGGCCGGATTTATAACGAGACAATCATTGACTCAAATTTTGCAACCTCAGTGAAATCAAACTGTCCAAGTACAGGTGGTGATAGCAACCTTACCTCACTTGATGTCACAACCAATGTGCTATTTGACAATGCTTATTTCAAGAATCTAGTTAACAAAAAAGGACTTTTACATTCTGATCAACAACTCTTCAGTGGTGGTTCTACTGACTCTCAAGTCACTACCTATAGCACAAGTCCTACAACTTTCTATACAGATTTTGCTAGTGCTATGGTGAAAATGGGAAATCTCAGTCCTTTAACCGGGAATAACGGCCAGATTCGTACTAATTGCCGCAAAGTTAACTAA

Protein sequence

>Msa0505640

MAFNMHYNLFFFFMLFSFLSMVSAQLSSDFYGTTCPKALSIINTAVCSAVSKEHRMGASLLRLHFHDCFGCDASVLLDDTSSFTGEKSAGANVNSLRGFDVIDNIKTQLETACPGVVSCADIVAAAARDAVVALGGPTWSVGLGRRDSTTASKDTATNDIPSPLMDLSDLISAFSNKGFTTKEMVVLSGAHTTGQARCQLFRGRIYNETIIDSNFATSVKSNCPSTGGDSNLTSLDVTTNVLFDNAYFKNLVNKKGLLHSDQQLFSGGSTDSQVTTYSTSPTTFYTDFASAMVKMGNLSPLTGNNGQIRTNCRKVN*