AlfalfaGEDB | Msa0505640

M. sativa cultivar zhongmu-4 / Msa0505640

KEGG: K00430
GO: GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010087 GO:0010089 GO:0012505 GO:0019222 GO:0019438 GO:0019748 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0048046 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0071944 GO:1900376 GO:1900378 GO:1901141 GO:1901360 GO:1901362 GO:1901428 GO:1901430 GO:1901576 GO:2000762
PFAM: PF00141.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0505640	XP_004500339.1	92.138	318	23	1	1	316	1	318	0.0	599

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0505640	sp\|P22195\|PER1_ARAHY	70.033	307	90	1	12	316	10	316	4.76e-156	442

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0505640	A0A1S2Y8I0	92.138	318	23	1	1	316	1	318	0.0	599

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0505640	0.810220	1.284418e-50	-8.615850e-47
Msa0004180	Msa0505640	-0.813627	2.325673e-51	-8.615850e-47
Msa0026420	Msa0505640	0.809144	2.187622e-50	-8.615850e-47
Msa0027020	Msa0505640	-0.846184	2.546550e-59	-8.615850e-47
Msa0031800	Msa0505640	-0.803047	4.200117e-49	-8.615850e-47
Msa0034540	Msa0505640	0.835997	1.210953e-56	-8.615850e-47
Msa0034590	Msa0505640	-0.811520	6.719738e-51	-8.615850e-47
Msa0039890	Msa0505640	0.845923	2.999564e-59	-8.615850e-47
Msa0046020	Msa0505640	-0.806257	8.981972e-50	-8.615850e-47
Msa0051480	Msa0505640	0.809206	2.122083e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0505640	MtrunA17_Chr3g0106901	95.298	319	12	2	1	316	5	323	0.0	584
Msa0505640	MtrunA17_Chr7g0244461	67.213	305	98	1	14	316	8	312	2.60e-149	421
Msa0505640	MtrunA17_Chr7g0244451	63.810	315	112	1	4	316	2	316	2.54e-142	404
Msa0505640	MtrunA17_Chr3g0129051	60.577	312	119	2	9	316	11	322	7.17e-135	385
Msa0505640	MtrunA17_Chr4g0013191	61.873	299	109	3	23	316	42	340	1.10e-134	385
Msa0505640	MtrunA17_Chr4g0013201	60.000	295	116	1	24	316	44	338	2.04e-134	385
Msa0505640	MtrunA17_Chr3g0114451	58.730	315	126	2	6	316	4	318	2.25e-133	381
Msa0505640	MtrunA17_Chr5g0438021	59.375	320	124	3	3	316	6	325	8.19e-133	380
Msa0505640	MtrunA17_Chr3g0129061	61.218	312	114	3	9	316	14	322	4.27e-130	373
Msa0505640	MtrunA17_Chr2g0320071	59.807	311	122	2	9	316	7	317	6.34e-130	372

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0505640	AT5G05340.1	62.000	300	110	2	21	316	25	324	4.81e-133	381
Msa0505640	AT5G58400.1	56.550	313	129	5	11	316	13	325	1.25e-118	345
Msa0505640	AT5G58390.1	54.633	313	137	3	9	316	4	316	6.11e-115	335
Msa0505640	AT1G14550.1	51.724	319	146	5	6	316	3	321	3.18e-111	325
Msa0505640	AT1G14540.1	51.613	310	146	3	11	316	6	315	3.11e-108	318
Msa0505640	AT5G06720.1	49.527	317	149	3	11	316	17	333	4.19e-106	313
Msa0505640	AT4G36430.1	46.865	303	151	3	24	316	28	330	1.62e-101	301
Msa0505640	AT2G18150.1	47.138	297	147	3	30	316	40	336	5.72e-101	300
Msa0505640	AT2G18140.1	46.844	301	150	3	26	316	35	335	1.18e-99	296
Msa0505640	AT5G06730.1	45.963	322	159	4	10	316	13	334	5.42e-97	291

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Find 64 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGATGGTTGTCCTTTC+AGG	0.221896	3_4:+51236546	Msa0505640:CDS
AAATCAAACTGTCCAAGTAC+AGG	0.528486	3_4:+51236960	Msa0505640:CDS
AAATCTGTATAGAAAGTTGT+AGG	0.425690	3_4:-51237143	None:intergenic
AAGCTTCACCGGAGAGAAGT+CGG	0.573162	3_4:+51235815	Msa0505640:CDS
AAGGACAACCATCTCTTTGG+TGG	0.552824	3_4:-51236541	None:intergenic
AATTTACTATCTCAGTTGGG+TGG	0.542773	3_4:+51236387	Msa0505640:intron
ACGAATCTGGCCGTTATTCC+CGG	0.335428	3_4:-51237207	None:intergenic
AGATAATTGAGCAGAGACCA+TGG	0.600081	3_4:-51234902	None:intergenic
AGCAATCATGGAAATGAAGG+CGG	0.675421	3_4:-51235026	None:intergenic
AGCATTGTCAAATAGCACAT+TGG	0.616357	3_4:-51237018	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTGCAGTGTTTATAATAGAA+AGG	-	chr3_4:51234960-51234979	None:intergenic	30.0%
GCAAGGATATTTGATATGTT+AGG	-	chr3_4:51236064-51236083	None:intergenic	30.0%
ATACCTGTAAATAGTACTCT+AGG	+	chr3_4:51236275-51236294	Msa0505640:intron	30.0%
GTTCAATTTACTATCTCAGT+TGG	+	chr3_4:51236383-51236402	Msa0505640:intron	30.0%
TGTTTGAAAAAGCAGATATG+AGG	-	chr3_4:51236512-51236531	None:intergenic	30.0%
TTGAAAACGTAGTTACAATG+CGG	+	chr3_4:51236706-51236725	Msa0505640:intron	30.0%
TGATTGTCTCGTTATAAATC+CGG	-	chr3_4:51236914-51236933	None:intergenic	30.0%
CTGCAGTGTTTATAATAGAA+AGG	-	chr3_4:51234960-51234979	None:intergenic	30.0%
GCAAGGATATTTGATATGTT+AGG	-	chr3_4:51236064-51236083	None:intergenic	30.0%
ATACCTGTAAATAGTACTCT+AGG	+	chr3_4:51236275-51236294	Msa0505640:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	51234844	51237253	51234844	ID=Msa0505640;Name=Msa0505640
chr3_4	mRNA	51234844	51237253	51234844	ID=Msa0505640-mRNA-1;Parent=Msa0505640;Name=Msa0505640-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0\|0\|0\|1\|1\|1\|4\|0\|316
chr3_4	exon	51234844	51235050	51234844	ID=Msa0505640-mRNA-1:exon:11178;Parent=Msa0505640-mRNA-1
chr3_4	exon	51235780	51235971	51235780	ID=Msa0505640-mRNA-1:exon:11179;Parent=Msa0505640-mRNA-1
chr3_4	exon	51236402	51236567	51236402	ID=Msa0505640-mRNA-1:exon:11180;Parent=Msa0505640-mRNA-1
chr3_4	exon	51236868	51237253	51236868	ID=Msa0505640-mRNA-1:exon:11181;Parent=Msa0505640-mRNA-1
chr3_4	CDS	51234844	51235050	51234844	ID=Msa0505640-mRNA-1:cds;Parent=Msa0505640-mRNA-1
chr3_4	CDS	51235780	51235971	51235780	ID=Msa0505640-mRNA-1:cds;Parent=Msa0505640-mRNA-1
chr3_4	CDS	51236402	51236567	51236402	ID=Msa0505640-mRNA-1:cds;Parent=Msa0505640-mRNA-1
chr3_4	CDS	51236868	51237253	51236868	ID=Msa0505640-mRNA-1:cds;Parent=Msa0505640-mRNA-1

Gene Sequence

>Msa0505640

ATGGCTTTCAACATGCATTATAACCTATTTTTCTTCTTTATGTTGTTTTCGTTCTTGTCCATGGTCTCTGCTCAATTATCTTCAGATTTCTATGGAACAACTTGCCCTAAAGCCCTTTCTATTATAAACACTGCAGTGTGCAGTGCTGTTTCTAAAGAACATCGCATGGGTGCTTCATTGCTCCGCCTTCATTTCCATGATTGCTTTGGATGTGATGCATCAGTTCTATTAGATGACACTTCAAGCTTCACCGGAGAGAAGTCGGCTGGTGCAAATGTAAATTCTCTCAGAGGTTTTGATGTGATTGACAACATTAAAACTCAATTGGAAACTGCTTGTCCTGGAGTTGTTTCTTGTGCTGATATTGTTGCAGCTGCTGCTCGTGATGCTGTTGTAGCGTTGGGTGGTCCAACATGGAGTGTTGGATTAGGTAGAAGAGATTCAACCACTGCTAGTAAAGATACTGCCACTAATGATATTCCATCCCCTCTTATGGATCTTAGTGACCTCATATCTGCTTTTTCAAACAAGGGATTTACCACCAAAGAGATGGTTGTCCTTTCAGGTGCTCATACAACCGGACAAGCCAGGTGTCAATTGTTCAGAGGCCGGATTTATAACGAGACAATCATTGACTCAAATTTTGCAACCTCAGTGAAATCAAACTGTCCAAGTACAGGTGGTGATAGCAACCTTACCTCACTTGATGTCACAACCAATGTGCTATTTGACAATGCTTATTTCAAGAATCTAGTTAACAAAAAAGGACTTTTACATTCTGATCAACAACTCTTCAGTGGTGGTTCTACTGACTCTCAAGTCACTACCTATAGCACAAGTCCTACAACTTTCTATACAGATTTTGCTAGTGCTATGGTGAAAATGGGAAATCTCAGTCCTTTAACCGGGAATAACGGCCAGATTCGTACTAATTGCCGCAAAGTTAACTAA

Protein sequence

>Msa0505640

MAFNMHYNLFFFFMLFSFLSMVSAQLSSDFYGTTCPKALSIINTAVCSAVSKEHRMGASLLRLHFHDCFGCDASVLLDDTSSFTGEKSAGANVNSLRGFDVIDNIKTQLETACPGVVSCADIVAAAARDAVVALGGPTWSVGLGRRDSTTASKDTATNDIPSPLMDLSDLISAFSNKGFTTKEMVVLSGAHTTGQARCQLFRGRIYNETIIDSNFATSVKSNCPSTGGDSNLTSLDVTTNVLFDNAYFKNLVNKKGLLHSDQQLFSGGSTDSQVTTYSTSPTTFYTDFASAMVKMGNLSPLTGNNGQIRTNCRKVN*