AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0429840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0429840 MtrunA17_Chr3g0133581 96.667 150 5 0 1 150 1 150 4.35e-108 304
Msa0429840 MtrunA17_Chr4g0045304 46.610 118 63 0 33 150 81 198 3.61e-35 121
Msa0429840 MtrunA17_Chr4g0045311 46.610 118 63 0 33 150 62 179 3.72e-35 120
Msa0429840 MtrunA17_Chr4g0045284 46.610 118 63 0 33 150 61 178 4.59e-35 120
Msa0429840 MtrunA17_Chr4g0045281 45.763 118 64 0 33 150 62 179 7.01e-35 119
Msa0429840 MtrunA17_Chr4g0045271 45.588 68 37 0 83 150 1 68 1.36e-16 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0429840 AT2G15780.1 42.478 113 63 1 33 145 142 252 9.78e-25 95.9
Msa0429840 AT2G15770.1 38.793 116 69 1 30 145 141 254 2.16e-23 93.2
Msa0429840 AT4G33930.1 35.897 117 58 6 43 148 229 339 7.07e-12 62.0
Msa0429840 AT4G34300.1 35.652 115 56 6 43 145 198 306 3.42e-11 60.1

Find 62 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCCAATGTGTCATTTATT+TGG 0.160335 3_2:-81353439 None:intergenic
AATTCAAAATATAAATAAAA+TGG 0.191769 3_2:+81354013 Msa0429840:three_prime_UTR
TTGAATTCAACAACGTTATA+AGG 0.223652 3_2:-81353997 None:intergenic
GAAATCAGTTGCTTTAAAAT+AGG 0.242477 3_2:-81353975 None:intergenic
CTTCCTTGTGATTGCTTCAA+TGG 0.264782 3_2:+81353304 Msa0429840:CDS
TCCAACCAAGATGCTTCTTT+TGG 0.296074 3_2:-81353354 None:intergenic
GTGATTGCTTCAATGGTTGC+AGG 0.311734 3_2:+81353311 Msa0429840:CDS
GGGAATTGGACTAAATTAAA+AGG 0.331947 3_2:-81353936 None:intergenic
ATGAGGGTGAAGAGGGGAAT+TGG 0.340973 3_2:-81353950 None:intergenic
TCATCAGAGGCAAAGTAATA+AGG 0.345121 3_2:-81353851 None:intergenic
TACACGACGTGTGAATTTAG+AGG 0.385924 3_2:+81353758 Msa0429840:CDS
GCTTCAATGGTTGCAGGGTC+AGG 0.401233 3_2:+81353317 Msa0429840:CDS
GACTCTGAAGGTTGGCGTGC+AGG 0.411668 3_2:+81353377 Msa0429840:CDS
AATTAAAAGGAACGTGTAGA+TGG 0.428002 3_2:-81353923 None:intergenic
AATACATCATCATATTATCT+AGG 0.431282 3_2:-81354102 None:intergenic
TATTACTTTGCCTCTGATGA+AGG 0.434564 3_2:+81353854 Msa0429840:CDS
ATTCAAAATATAAATAAAAT+GGG 0.447588 3_2:+81354014 Msa0429840:three_prime_UTR
AATGCCTATGACTGTATTGC+TGG 0.454610 3_2:+81353878 Msa0429840:CDS
GAGTCCAGCAATACAGTCAT+AGG 0.464321 3_2:-81353882 None:intergenic
GTCGTGTAACTCCACATATT+CGG 0.471065 3_2:-81353743 None:intergenic
AATTCCCCTCTTCACCCTCA+TGG 0.480388 3_2:+81353952 Msa0429840:three_prime_UTR
CAATGTGTCATTTATTTGGA+AGG 0.485349 3_2:-81353435 None:intergenic
TTTAGAGGAGCAAAGTTGCT+TGG 0.490765 3_2:+81353773 Msa0429840:CDS
TTTACTTGCTACCGAATATG+TGG 0.498287 3_2:+81353732 Msa0429840:CDS
TTCCAAATAAATGACACATT+GGG 0.508285 3_2:+81353437 Msa0429840:CDS
ATGTGTCATTTATTTGGAAG+GGG 0.525400 3_2:-81353433 None:intergenic
AATGTGTCATTTATTTGGAA+GGG 0.530429 3_2:-81353434 None:intergenic
CTTCCAAATAAATGACACAT+TGG 0.530831 3_2:+81353436 Msa0429840:CDS
CAGAACCAAAAGAAGCATCT+TGG 0.539687 3_2:+81353349 Msa0429840:CDS
ACCAAAAGAAGCATCTTGGT+TGG 0.551375 3_2:+81353353 Msa0429840:CDS
GGTTGCAGGGTCAGGAAGCA+AGG 0.552711 3_2:+81353325 Msa0429840:CDS
CAGGCACTAACTACACCCAA+TGG 0.558303 3_2:+81353396 Msa0429840:CDS
ATAGGCCATGAGGGTGAAGA+GGG 0.559378 3_2:-81353957 None:intergenic
TGCTTTAAAATAGGCCATGA+GGG 0.565365 3_2:-81353966 None:intergenic
GCTGATCAAGGTGGTGGTGA+GGG 0.565763 3_2:+81353800 Msa0429840:CDS
TGATTGCTTCAATGGTTGCA+GGG 0.566600 3_2:+81353312 Msa0429840:CDS
TTCGGTAGCAAGTAAACGCT+GGG 0.568902 3_2:-81353725 None:intergenic
AATAGGCCATGAGGGTGAAG+AGG 0.582433 3_2:-81353958 None:intergenic
TGGTTGGAGACTCTGAAGGT+TGG 0.582794 3_2:+81353369 Msa0429840:CDS
AGGCACTAACTACACCCAAT+GGG 0.584087 3_2:+81353397 Msa0429840:CDS
ATTCGGTAGCAAGTAAACGC+TGG 0.587303 3_2:-81353726 None:intergenic
AACCGTGGAATTTCCTGAAG+GGG 0.598371 3_2:-81353699 None:intergenic
AGATGGAACAGCAATGAACT+TGG 0.599581 3_2:-81353906 None:intergenic
TAAAGATTGAGCTGAATCAG+TGG 0.605281 3_2:+81353825 Msa0429840:CDS
TGCTGATCAAGGTGGTGGTG+AGG 0.607379 3_2:+81353799 Msa0429840:CDS
ATAGGCATTGCCTTCATCAG+AGG 0.610448 3_2:-81353864 None:intergenic
ATGTCTAGAATTCTCATACA+AGG 0.613782 3_2:+81353275 Msa0429840:CDS
CAATCAACTAATCATATCGT+AGG 0.615231 3_2:+81353224 None:intergenic
GGTAATGCTGATCAAGGTGG+TGG 0.619304 3_2:+81353794 Msa0429840:CDS
ACCGTGGAATTTCCTGAAGG+GGG 0.620984 3_2:-81353698 None:intergenic
TTGCTTGGTAATGCTGATCA+AGG 0.621103 3_2:+81353788 Msa0429840:CDS
ATCTTGGTTGGAGACTCTGA+AGG 0.629130 3_2:+81353365 Msa0429840:CDS
CAACCATTGAAGCAATCACA+AGG 0.631574 3_2:-81353307 None:intergenic
TTGCTTTAAAATAGGCCATG+AGG 0.644322 3_2:-81353967 None:intergenic
CAAAATATAAATAAAATGGG+TGG 0.650348 3_2:+81354017 Msa0429840:three_prime_UTR
CAACCGTGGAATTTCCTGAA+GGG 0.654328 3_2:-81353700 None:intergenic
ACAACCGTGGAATTTCCTGA+AGG 0.668113 3_2:-81353701 None:intergenic
CTTGGTAATGCTGATCAAGG+TGG 0.670664 3_2:+81353791 Msa0429840:CDS
ACATCATCATATTATCTAGG+TGG 0.674676 3_2:-81354099 None:intergenic
GTAAACGCTGGGAACAACCG+TGG 0.691075 3_2:-81353714 None:intergenic
CCGTGGAATTTCCTGAAGGG+GGG 0.694717 3_2:-81353697 None:intergenic
TAGGCCATGAGGGTGAAGAG+GGG 0.735281 3_2:-81353956 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTCAAATTATTATCAA+AGG + chr3_2:81353565-81353584 Msa0429840:intron 10.0%
!!! TTTTTTCAAATTATTATCAA+AGG + chr3_2:81353565-81353584 Msa0429840:intron 10.0%
!! TTAAATATAATTAAATGCGT+TGG - chr3_2:81353536-81353555 None:intergenic 15.0%
!! ATAATTTGAAAAAATCAAAG+TGG - chr3_2:81353559-81353578 None:intergenic 15.0%
!!! AAAAATTGTGATTTTTGTTT+TGG + chr3_2:81354070-81354089 Msa0429840:three_prime_UTR 15.0%
!! TTAAATATAATTAAATGCGT+TGG - chr3_2:81353536-81353555 None:intergenic 15.0%
!! ATAATTTGAAAAAATCAAAG+TGG - chr3_2:81353559-81353578 None:intergenic 15.0%
!!! AAAAATTGTGATTTTTGTTT+TGG + chr3_2:81354070-81354089 Msa0429840:three_prime_UTR 15.0%
!!! TTTGATTGATGGATTAATTT+TGG + chr3_2:81353640-81353659 Msa0429840:intron 20.0%
!! CAAAATATAAATAAAATGGG+TGG + chr3_2:81354017-81354036 Msa0429840:three_prime_UTR 20.0%
!!! AATCACAATTTTTTTTCTGT+TGG - chr3_2:81354063-81354082 None:intergenic 20.0%
!! AATACATCATCATATTATCT+AGG - chr3_2:81354105-81354124 None:intergenic 20.0%
!!! TTTGATTGATGGATTAATTT+TGG + chr3_2:81353640-81353659 Msa0429840:intron 20.0%
!! CAAAATATAAATAAAATGGG+TGG + chr3_2:81354017-81354036 Msa0429840:three_prime_UTR 20.0%
!!! AATCACAATTTTTTTTCTGT+TGG - chr3_2:81354063-81354082 None:intergenic 20.0%
!! AATACATCATCATATTATCT+AGG - chr3_2:81354105-81354124 None:intergenic 20.0%
!!! AATGTGTCATTTATTTGGAA+GGG - chr3_2:81353437-81353456 None:intergenic 25.0%
! TTCCAAATAAATGACACATT+GGG + chr3_2:81353437-81353456 Msa0429840:CDS 25.0%
! CAATATATATGCACAAACAA+TGG - chr3_2:81353603-81353622 None:intergenic 25.0%
!!! GAAATCAGTTGCTTTAAAAT+AGG - chr3_2:81353978-81353997 None:intergenic 25.0%
! TTGAATTCAACAACGTTATA+AGG - chr3_2:81354000-81354019 None:intergenic 25.0%
!!! AATGTGTCATTTATTTGGAA+GGG - chr3_2:81353437-81353456 None:intergenic 25.0%
! TTCCAAATAAATGACACATT+GGG + chr3_2:81353437-81353456 Msa0429840:CDS 25.0%
! CAATATATATGCACAAACAA+TGG - chr3_2:81353603-81353622 None:intergenic 25.0%
!!! GAAATCAGTTGCTTTAAAAT+AGG - chr3_2:81353978-81353997 None:intergenic 25.0%
! TTGAATTCAACAACGTTATA+AGG - chr3_2:81354000-81354019 None:intergenic 25.0%
! ATGTCTAGAATTCTCATACA+AGG + chr3_2:81353275-81353294 Msa0429840:CDS 30.0%
!! ATGTGTCATTTATTTGGAAG+GGG - chr3_2:81353436-81353455 None:intergenic 30.0%
!! CAATGTGTCATTTATTTGGA+AGG - chr3_2:81353438-81353457 None:intergenic 30.0%
CTTCCAAATAAATGACACAT+TGG + chr3_2:81353436-81353455 Msa0429840:CDS 30.0%
!! TACCCAATGTGTCATTTATT+TGG - chr3_2:81353442-81353461 None:intergenic 30.0%
CTTCTTCTTCATTTGATTGA+TGG + chr3_2:81353629-81353648 Msa0429840:intron 30.0%
AATTAAAAGGAACGTGTAGA+TGG - chr3_2:81353926-81353945 None:intergenic 30.0%
GGGAATTGGACTAAATTAAA+AGG - chr3_2:81353939-81353958 None:intergenic 30.0%
ACATCATCATATTATCTAGG+TGG - chr3_2:81354102-81354121 None:intergenic 30.0%
! ATGTCTAGAATTCTCATACA+AGG + chr3_2:81353275-81353294 Msa0429840:CDS 30.0%
!! ATGTGTCATTTATTTGGAAG+GGG - chr3_2:81353436-81353455 None:intergenic 30.0%
!! CAATGTGTCATTTATTTGGA+AGG - chr3_2:81353438-81353457 None:intergenic 30.0%
CTTCCAAATAAATGACACAT+TGG + chr3_2:81353436-81353455 Msa0429840:CDS 30.0%
!! TACCCAATGTGTCATTTATT+TGG - chr3_2:81353442-81353461 None:intergenic 30.0%
CTTCTTCTTCATTTGATTGA+TGG + chr3_2:81353629-81353648 Msa0429840:intron 30.0%
AATTAAAAGGAACGTGTAGA+TGG - chr3_2:81353926-81353945 None:intergenic 30.0%
GGGAATTGGACTAAATTAAA+AGG - chr3_2:81353939-81353958 None:intergenic 30.0%
ACATCATCATATTATCTAGG+TGG - chr3_2:81354102-81354121 None:intergenic 30.0%
!!! GCTATTTTTTATGGCCCATT+GGG - chr3_2:81353414-81353433 None:intergenic 35.0%
!!! TTGGAAGGGGCTATTTTTTA+TGG - chr3_2:81353423-81353442 None:intergenic 35.0%
! TTTACTTGCTACCGAATATG+TGG + chr3_2:81353732-81353751 Msa0429840:CDS 35.0%
TAAAGATTGAGCTGAATCAG+TGG + chr3_2:81353825-81353844 Msa0429840:CDS 35.0%
TCATCAGAGGCAAAGTAATA+AGG - chr3_2:81353854-81353873 None:intergenic 35.0%
TATTACTTTGCCTCTGATGA+AGG + chr3_2:81353854-81353873 Msa0429840:CDS 35.0%
!! TGCTTTAAAATAGGCCATGA+GGG - chr3_2:81353969-81353988 None:intergenic 35.0%
!! TTGCTTTAAAATAGGCCATG+AGG - chr3_2:81353970-81353989 None:intergenic 35.0%
!!! GCTATTTTTTATGGCCCATT+GGG - chr3_2:81353414-81353433 None:intergenic 35.0%
!!! TTGGAAGGGGCTATTTTTTA+TGG - chr3_2:81353423-81353442 None:intergenic 35.0%
! TTTACTTGCTACCGAATATG+TGG + chr3_2:81353732-81353751 Msa0429840:CDS 35.0%
TAAAGATTGAGCTGAATCAG+TGG + chr3_2:81353825-81353844 Msa0429840:CDS 35.0%
TCATCAGAGGCAAAGTAATA+AGG - chr3_2:81353854-81353873 None:intergenic 35.0%
TATTACTTTGCCTCTGATGA+AGG + chr3_2:81353854-81353873 Msa0429840:CDS 35.0%
!! TGCTTTAAAATAGGCCATGA+GGG - chr3_2:81353969-81353988 None:intergenic 35.0%
!! TTGCTTTAAAATAGGCCATG+AGG - chr3_2:81353970-81353989 None:intergenic 35.0%
CTTCCTTGTGATTGCTTCAA+TGG + chr3_2:81353304-81353323 Msa0429840:CDS 40.0%
CAACCATTGAAGCAATCACA+AGG - chr3_2:81353310-81353329 None:intergenic 40.0%
TGATTGCTTCAATGGTTGCA+GGG + chr3_2:81353312-81353331 Msa0429840:CDS 40.0%
!!! CAAGATGCTTCTTTTGGTTC+TGG - chr3_2:81353351-81353370 None:intergenic 40.0%
!! CAGAACCAAAAGAAGCATCT+TGG + chr3_2:81353349-81353368 Msa0429840:CDS 40.0%
!! ACCAAAAGAAGCATCTTGGT+TGG + chr3_2:81353353-81353372 Msa0429840:CDS 40.0%
! TCCAACCAAGATGCTTCTTT+TGG - chr3_2:81353357-81353376 None:intergenic 40.0%
!!! GGCTATTTTTTATGGCCCAT+TGG - chr3_2:81353415-81353434 None:intergenic 40.0%
GTCGTGTAACTCCACATATT+CGG - chr3_2:81353746-81353765 None:intergenic 40.0%
TACACGACGTGTGAATTTAG+AGG + chr3_2:81353758-81353777 Msa0429840:CDS 40.0%
TTTAGAGGAGCAAAGTTGCT+TGG + chr3_2:81353773-81353792 Msa0429840:CDS 40.0%
!! TTGCTTGGTAATGCTGATCA+AGG + chr3_2:81353788-81353807 Msa0429840:CDS 40.0%
AATGCCTATGACTGTATTGC+TGG + chr3_2:81353878-81353897 Msa0429840:CDS 40.0%
AGATGGAACAGCAATGAACT+TGG - chr3_2:81353909-81353928 None:intergenic 40.0%
CTTCCTTGTGATTGCTTCAA+TGG + chr3_2:81353304-81353323 Msa0429840:CDS 40.0%
CAACCATTGAAGCAATCACA+AGG - chr3_2:81353310-81353329 None:intergenic 40.0%
TGATTGCTTCAATGGTTGCA+GGG + chr3_2:81353312-81353331 Msa0429840:CDS 40.0%
!!! CAAGATGCTTCTTTTGGTTC+TGG - chr3_2:81353351-81353370 None:intergenic 40.0%
!! CAGAACCAAAAGAAGCATCT+TGG + chr3_2:81353349-81353368 Msa0429840:CDS 40.0%
!! ACCAAAAGAAGCATCTTGGT+TGG + chr3_2:81353353-81353372 Msa0429840:CDS 40.0%
! TCCAACCAAGATGCTTCTTT+TGG - chr3_2:81353357-81353376 None:intergenic 40.0%
!!! GGCTATTTTTTATGGCCCAT+TGG - chr3_2:81353415-81353434 None:intergenic 40.0%
GTCGTGTAACTCCACATATT+CGG - chr3_2:81353746-81353765 None:intergenic 40.0%
TACACGACGTGTGAATTTAG+AGG + chr3_2:81353758-81353777 Msa0429840:CDS 40.0%
TTTAGAGGAGCAAAGTTGCT+TGG + chr3_2:81353773-81353792 Msa0429840:CDS 40.0%
!! TTGCTTGGTAATGCTGATCA+AGG + chr3_2:81353788-81353807 Msa0429840:CDS 40.0%
AATGCCTATGACTGTATTGC+TGG + chr3_2:81353878-81353897 Msa0429840:CDS 40.0%
AGATGGAACAGCAATGAACT+TGG - chr3_2:81353909-81353928 None:intergenic 40.0%
GTGATTGCTTCAATGGTTGC+AGG + chr3_2:81353311-81353330 Msa0429840:CDS 45.0%
ATCTTGGTTGGAGACTCTGA+AGG + chr3_2:81353365-81353384 Msa0429840:CDS 45.0%
AGGCACTAACTACACCCAAT+GGG + chr3_2:81353397-81353416 Msa0429840:CDS 45.0%
AACCGTGGAATTTCCTGAAG+GGG - chr3_2:81353702-81353721 None:intergenic 45.0%
CAACCGTGGAATTTCCTGAA+GGG - chr3_2:81353703-81353722 None:intergenic 45.0%
ACAACCGTGGAATTTCCTGA+AGG - chr3_2:81353704-81353723 None:intergenic 45.0%
TTCGGTAGCAAGTAAACGCT+GGG - chr3_2:81353728-81353747 None:intergenic 45.0%
ATTCGGTAGCAAGTAAACGC+TGG - chr3_2:81353729-81353748 None:intergenic 45.0%
!! CTTGGTAATGCTGATCAAGG+TGG + chr3_2:81353791-81353810 Msa0429840:CDS 45.0%
! ATAGGCATTGCCTTCATCAG+AGG - chr3_2:81353867-81353886 None:intergenic 45.0%
GAGTCCAGCAATACAGTCAT+AGG - chr3_2:81353885-81353904 None:intergenic 45.0%
GTGATTGCTTCAATGGTTGC+AGG + chr3_2:81353311-81353330 Msa0429840:CDS 45.0%
ATCTTGGTTGGAGACTCTGA+AGG + chr3_2:81353365-81353384 Msa0429840:CDS 45.0%
AGGCACTAACTACACCCAAT+GGG + chr3_2:81353397-81353416 Msa0429840:CDS 45.0%
AACCGTGGAATTTCCTGAAG+GGG - chr3_2:81353702-81353721 None:intergenic 45.0%
CAACCGTGGAATTTCCTGAA+GGG - chr3_2:81353703-81353722 None:intergenic 45.0%
ACAACCGTGGAATTTCCTGA+AGG - chr3_2:81353704-81353723 None:intergenic 45.0%
TTCGGTAGCAAGTAAACGCT+GGG - chr3_2:81353728-81353747 None:intergenic 45.0%
ATTCGGTAGCAAGTAAACGC+TGG - chr3_2:81353729-81353748 None:intergenic 45.0%
!! CTTGGTAATGCTGATCAAGG+TGG + chr3_2:81353791-81353810 Msa0429840:CDS 45.0%
! ATAGGCATTGCCTTCATCAG+AGG - chr3_2:81353867-81353886 None:intergenic 45.0%
GAGTCCAGCAATACAGTCAT+AGG - chr3_2:81353885-81353904 None:intergenic 45.0%
!! AATTCAAAATATAAATAAAA+TGG + chr3_2:81354013-81354032 Msa0429840:three_prime_UTR 5.0%
!! ATTCAAAATATAAATAAAAT+GGG + chr3_2:81354014-81354033 Msa0429840:three_prime_UTR 5.0%
!! AATTCAAAATATAAATAAAA+TGG + chr3_2:81354013-81354032 Msa0429840:three_prime_UTR 5.0%
!! ATTCAAAATATAAATAAAAT+GGG + chr3_2:81354014-81354033 Msa0429840:three_prime_UTR 5.0%
! TGGTTGGAGACTCTGAAGGT+TGG + chr3_2:81353369-81353388 Msa0429840:CDS 50.0%
CAGGCACTAACTACACCCAA+TGG + chr3_2:81353396-81353415 Msa0429840:CDS 50.0%
ACCGTGGAATTTCCTGAAGG+GGG - chr3_2:81353701-81353720 None:intergenic 50.0%
GGTAATGCTGATCAAGGTGG+TGG + chr3_2:81353794-81353813 Msa0429840:CDS 50.0%
ATGAGGGTGAAGAGGGGAAT+TGG - chr3_2:81353953-81353972 None:intergenic 50.0%
AATTCCCCTCTTCACCCTCA+TGG + chr3_2:81353952-81353971 Msa0429840:three_prime_UTR 50.0%
ATAGGCCATGAGGGTGAAGA+GGG - chr3_2:81353960-81353979 None:intergenic 50.0%
AATAGGCCATGAGGGTGAAG+AGG - chr3_2:81353961-81353980 None:intergenic 50.0%
! TGGTTGGAGACTCTGAAGGT+TGG + chr3_2:81353369-81353388 Msa0429840:CDS 50.0%
CAGGCACTAACTACACCCAA+TGG + chr3_2:81353396-81353415 Msa0429840:CDS 50.0%
ACCGTGGAATTTCCTGAAGG+GGG - chr3_2:81353701-81353720 None:intergenic 50.0%
GGTAATGCTGATCAAGGTGG+TGG + chr3_2:81353794-81353813 Msa0429840:CDS 50.0%
ATGAGGGTGAAGAGGGGAAT+TGG - chr3_2:81353953-81353972 None:intergenic 50.0%
AATTCCCCTCTTCACCCTCA+TGG + chr3_2:81353952-81353971 Msa0429840:three_prime_UTR 50.0%
ATAGGCCATGAGGGTGAAGA+GGG - chr3_2:81353960-81353979 None:intergenic 50.0%
AATAGGCCATGAGGGTGAAG+AGG - chr3_2:81353961-81353980 None:intergenic 50.0%
GCTTCAATGGTTGCAGGGTC+AGG + chr3_2:81353317-81353336 Msa0429840:CDS 55.0%
GTGTTCAAGTACCCCCCTTC+AGG + chr3_2:81353686-81353705 Msa0429840:intron 55.0%
CCGTGGAATTTCCTGAAGGG+GGG - chr3_2:81353700-81353719 None:intergenic 55.0%
CCCCCCTTCAGGAAATTCCA+CGG + chr3_2:81353697-81353716 Msa0429840:CDS 55.0%
GTAAACGCTGGGAACAACCG+TGG - chr3_2:81353717-81353736 None:intergenic 55.0%
! TGCTGATCAAGGTGGTGGTG+AGG + chr3_2:81353799-81353818 Msa0429840:CDS 55.0%
! GCTGATCAAGGTGGTGGTGA+GGG + chr3_2:81353800-81353819 Msa0429840:CDS 55.0%
TAGGCCATGAGGGTGAAGAG+GGG - chr3_2:81353959-81353978 None:intergenic 55.0%
GCTTCAATGGTTGCAGGGTC+AGG + chr3_2:81353317-81353336 Msa0429840:CDS 55.0%
GTGTTCAAGTACCCCCCTTC+AGG + chr3_2:81353686-81353705 Msa0429840:intron 55.0%
CCGTGGAATTTCCTGAAGGG+GGG - chr3_2:81353700-81353719 None:intergenic 55.0%
CCCCCCTTCAGGAAATTCCA+CGG + chr3_2:81353697-81353716 Msa0429840:CDS 55.0%
GTAAACGCTGGGAACAACCG+TGG - chr3_2:81353717-81353736 None:intergenic 55.0%
! TGCTGATCAAGGTGGTGGTG+AGG + chr3_2:81353799-81353818 Msa0429840:CDS 55.0%
! GCTGATCAAGGTGGTGGTGA+GGG + chr3_2:81353800-81353819 Msa0429840:CDS 55.0%
TAGGCCATGAGGGTGAAGAG+GGG - chr3_2:81353959-81353978 None:intergenic 55.0%
GGTTGCAGGGTCAGGAAGCA+AGG + chr3_2:81353325-81353344 Msa0429840:CDS 60.0%
! GACTCTGAAGGTTGGCGTGC+AGG + chr3_2:81353377-81353396 Msa0429840:CDS 60.0%
GGTTGCAGGGTCAGGAAGCA+AGG + chr3_2:81353325-81353344 Msa0429840:CDS 60.0%
! GACTCTGAAGGTTGGCGTGC+AGG + chr3_2:81353377-81353396 Msa0429840:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 81353229 81354152 81353229 ID=Msa0429840;Name=Msa0429840
chr3_2 mRNA 81353229 81354152 81353229 ID=Msa0429840-mRNA-1;Parent=Msa0429840;Name=Msa0429840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=34|1|1|1|1|1|2|209|150
chr3_2 exon 81353229 81353458 81353229 ID=Msa0429840-mRNA-1:exon:22429;Parent=Msa0429840-mRNA-1
chr3_2 exon 81353687 81354152 81353687 ID=Msa0429840-mRNA-1:exon:22430;Parent=Msa0429840-mRNA-1
chr3_2 five_prime_UTR 81353229 81353262 81353229 ID=Msa0429840-mRNA-1:five_prime_utr;Parent=Msa0429840-mRNA-1
chr3_2 CDS 81353263 81353458 81353263 ID=Msa0429840-mRNA-1:cds;Parent=Msa0429840-mRNA-1
chr3_2 CDS 81353687 81353943 81353687 ID=Msa0429840-mRNA-1:cds;Parent=Msa0429840-mRNA-1
chr3_2 three_prime_UTR 81353944 81354152 81353944 ID=Msa0429840-mRNA-1:three_prime_utr;Parent=Msa0429840-mRNA-1
Gene Sequence

>Msa0429840

ATGCATAAACATATGTCTAGAATTCTCATACAAGGAGTTATCTTCCTTGTGATTGCTTCAATGGTTGCAGGGTCAGGAAGCAAGGCCAGAACCAAAAGAAGCATCTTGGTTGGAGACTCTGAAGGTTGGCGTGCAGGCACTAACTACACCCAATGGGCCATAAAAAATAGCCCCTTCCAAATAAATGACACATTGGTGTTCAAGTACCCCCCTTCAGGAAATTCCACGGTTGTTCCCAGCGTTTACTTGCTACCGAATATGTGGAGTTACACGACGTGTGAATTTAGAGGAGCAAAGTTGCTTGGTAATGCTGATCAAGGTGGTGGTGAGGGCATAAAGATTGAGCTGAATCAGTGGAAGCCTTATTACTTTGCCTCTGATGAAGGCAATGCCTATGACTGTATTGCTGGACTCACCAAGTTCATTGCTGTTCCATCTACACGTTCCTTTTAA

Protein sequence

>Msa0429840

MHKHMSRILIQGVIFLVIASMVAGSGSKARTKRSILVGDSEGWRAGTNYTQWAIKNSPFQINDTLVFKYPPSGNSTVVPSVYLLPNMWSYTTCEFRGAKLLGNADQGGGEGIKIELNQWKPYYFASDEGNAYDCIAGLTKFIAVPSTRSF*