Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588000 | PSS21679.1 | 83.333 | 72 | 12 | 0 | 5 | 76 | 11 | 82 | 3.85e-33 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588000 | sp|Q9M1H3|AB4F_ARATH | 78.947 | 76 | 16 | 0 | 1 | 76 | 528 | 603 | 2.68e-33 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011170 | Msa0588000 | 0.819886 | 9.174516e-53 | -8.615850e-47 |
| Msa0044000 | Msa0588000 | 0.805493 | 1.299871e-49 | -8.615850e-47 |
| Msa0241390 | Msa0588000 | 0.807490 | 4.928166e-50 | -8.615850e-47 |
| Msa0588000 | Msa0602390 | 0.800461 | 1.425682e-48 | -8.615850e-47 |
| Msa0588000 | Msa0607050 | 0.803988 | 2.680663e-49 | -8.615850e-47 |
| Msa0588000 | Msa0709400 | 0.810609 | 1.058891e-50 | -8.615850e-47 |
| Msa0588000 | Msa0820850 | 0.816157 | 6.392365e-52 | -8.615850e-47 |
| Msa0588000 | Msa0849030 | 0.803283 | 3.752591e-49 | -8.615850e-47 |
| Msa0588000 | Msa1003620 | 0.806514 | 7.927481e-50 | -8.615850e-47 |
| Msa0588000 | Msa1253020 | 0.828982 | 6.641349e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588000 | MtrunA17_Chr7g0220881 | 82.895 | 76 | 13 | 0 | 1 | 76 | 520 | 595 | 3.78e-36 | 128 |
| Msa0588000 | MtrunA17_Chr8g0371361 | 82.895 | 76 | 13 | 0 | 1 | 76 | 518 | 593 | 4.23e-36 | 127 |
| Msa0588000 | MtrunA17_Chr1g0181461 | 84.722 | 72 | 11 | 0 | 5 | 76 | 370 | 441 | 8.14e-36 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0588000 | AT3G54540.2 | 78.947 | 76 | 16 | 0 | 1 | 76 | 528 | 603 | 2.73e-34 | 123 |
| Msa0588000 | AT3G54540.1 | 78.947 | 76 | 16 | 0 | 1 | 76 | 528 | 603 | 2.73e-34 | 123 |
Find 19 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGTAAAAGCAGCCTTTC+TGG | 0.203295 | 4_2:+10127203 | Msa0588000:intron |
| GGTCTGGATGTAGCCGAAAA+AGG | 0.371302 | 4_2:-10127373 | None:intergenic |
| GAAGTAAGAAATTGAGGATA+GGG | 0.398585 | 4_2:+10127294 | Msa0588000:CDS |
| TTACTAAGTCCCTCCTGGTC+TGG | 0.421538 | 4_2:-10127389 | None:intergenic |
| GAGATATTCCCAACACTTTG+TGG | 0.436079 | 4_2:+10127316 | Msa0588000:CDS |
| TTCGAAGAAGTAAGAAATTG+AGG | 0.438056 | 4_2:+10127288 | Msa0588000:CDS |
| GTGTTTCATCCATTGTTAGT+AGG | 0.453766 | 4_2:-10127340 | None:intergenic |
| AGAAGTAAGAAATTGAGGAT+AGG | 0.461250 | 4_2:+10127293 | Msa0588000:CDS |
| TAGTAGGTCCACAAAGTGTT+GGG | 0.476791 | 4_2:-10127324 | None:intergenic |
| CTTGCTTACTAAGTCCCTCC+TGG | 0.488701 | 4_2:-10127394 | None:intergenic |
| AATAAAACTAACACTACCAT+TGG | 0.505603 | 4_2:-10126894 | None:intergenic |
| TTAGTAGGTCCACAAAGTGT+TGG | 0.510313 | 4_2:-10127325 | None:intergenic |
| AACTCTTCTAGCTGGTGATG+TGG | 0.543575 | 4_2:+10127247 | Msa0588000:CDS |
| CTTTGTGGACCTACTAACAA+TGG | 0.566897 | 4_2:+10127331 | Msa0588000:CDS |
| ACACTTATAACTCTTCTAGC+TGG | 0.579323 | 4_2:+10127239 | Msa0588000:CDS |
| GGTGATGTGGTTCGAAGTGA+AGG | 0.608891 | 4_2:+10127260 | Msa0588000:CDS |
| GGAGGGACTTAGTAAGCAAG+AGG | 0.623814 | 4_2:+10127397 | Msa0588000:CDS |
| CGGCTACATCCAGACCAGGA+GGG | 0.656777 | 4_2:+10127380 | Msa0588000:CDS |
| TCGGCTACATCCAGACCAGG+AGG | 0.687323 | 4_2:+10127379 | Msa0588000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATAAATAAATAAA+TGG | + | chr4_2:10128079-10128098 | Msa0588000:intron | 0.0% |
| !! | AAAAATAATAAATAAATAAA+TGG | + | chr4_2:10128079-10128098 | Msa0588000:intron | 0.0% |
| !! | AATAAATAAATAAATGGTAA+CGG | + | chr4_2:10128085-10128104 | Msa0588000:intron | 10.0% |
| !! | AATAAATAAATAAATGGTAA+CGG | + | chr4_2:10128085-10128104 | Msa0588000:intron | 10.0% |
| !!! | TTTTATTTATACTACCACTT+TGG | + | chr4_2:10126910-10126929 | Msa0588000:intron | 20.0% |
| !!! | CAATTTTCTATACAAAAGAA+AGG | - | chr4_2:10127871-10127890 | None:intergenic | 20.0% |
| !! | ATTTCTTAAGCTTATTACAT+AGG | + | chr4_2:10128016-10128035 | Msa0588000:intron | 20.0% |
| !! | TATTTCATATTTATAGCCTA+AGG | - | chr4_2:10128145-10128164 | None:intergenic | 20.0% |
| !! | CAATTTAAGTAGTTATTCAT+AGG | + | chr4_2:10128185-10128204 | Msa0588000:intron | 20.0% |
| !! | GATTAGATAAAAGGATATAA+GGG | - | chr4_2:10128306-10128325 | None:intergenic | 20.0% |
| !! | AGATTAGATAAAAGGATATA+AGG | - | chr4_2:10128307-10128326 | None:intergenic | 20.0% |
| !!! | TTTTATTTATACTACCACTT+TGG | + | chr4_2:10126910-10126929 | Msa0588000:intron | 20.0% |
| !!! | CAATTTTCTATACAAAAGAA+AGG | - | chr4_2:10127871-10127890 | None:intergenic | 20.0% |
| !! | ATTTCTTAAGCTTATTACAT+AGG | + | chr4_2:10128016-10128035 | Msa0588000:intron | 20.0% |
| !! | TATTTCATATTTATAGCCTA+AGG | - | chr4_2:10128145-10128164 | None:intergenic | 20.0% |
| !! | CAATTTAAGTAGTTATTCAT+AGG | + | chr4_2:10128185-10128204 | Msa0588000:intron | 20.0% |
| !! | GATTAGATAAAAGGATATAA+GGG | - | chr4_2:10128306-10128325 | None:intergenic | 20.0% |
| !! | AGATTAGATAAAAGGATATA+AGG | - | chr4_2:10128307-10128326 | None:intergenic | 20.0% |
| !!! | ATTTGACTTGTTTTTTCTGA+CGG | + | chr4_2:10126975-10126994 | Msa0588000:intron | 25.0% |
| ! | AGATAGAAAGATAACTAAGT+TGG | - | chr4_2:10127143-10127162 | None:intergenic | 25.0% |
| ! | TCATCTAACATTAAAATGTG+AGG | - | chr4_2:10127542-10127561 | None:intergenic | 25.0% |
| ! | AAGTGAGTTTGATTAAATCA+CGG | - | chr4_2:10127774-10127793 | None:intergenic | 25.0% |
| ! | TCTATACAAAAGAAAGGAAA+AGG | - | chr4_2:10127865-10127884 | None:intergenic | 25.0% |
| !! | AATTTTGTACTCAAATGAGA+TGG | - | chr4_2:10127948-10127967 | None:intergenic | 25.0% |
| !!! | TAAGAAATGTTAAGTTGAGA+GGG | - | chr4_2:10128004-10128023 | None:intergenic | 25.0% |
| !!! | TTAAGAAATGTTAAGTTGAG+AGG | - | chr4_2:10128005-10128024 | None:intergenic | 25.0% |
| !!! | TAAATAAATGGTAACGGAAA+TGG | + | chr4_2:10128091-10128110 | Msa0588000:intron | 25.0% |
| ! | GAAGAGATAGATTAGATAAA+AGG | - | chr4_2:10128315-10128334 | None:intergenic | 25.0% |
| ! | AACTAGGTAACATTAATCTT+AGG | + | chr4_2:10128384-10128403 | Msa0588000:intron | 25.0% |
| ! | ACTAGGTAACATTAATCTTA+GGG | + | chr4_2:10128385-10128404 | Msa0588000:intron | 25.0% |
| !!! | ATTTGACTTGTTTTTTCTGA+CGG | + | chr4_2:10126975-10126994 | Msa0588000:intron | 25.0% |
| ! | AGATAGAAAGATAACTAAGT+TGG | - | chr4_2:10127143-10127162 | None:intergenic | 25.0% |
| ! | TCATCTAACATTAAAATGTG+AGG | - | chr4_2:10127542-10127561 | None:intergenic | 25.0% |
| ! | AAGTGAGTTTGATTAAATCA+CGG | - | chr4_2:10127774-10127793 | None:intergenic | 25.0% |
| ! | TCTATACAAAAGAAAGGAAA+AGG | - | chr4_2:10127865-10127884 | None:intergenic | 25.0% |
| !! | AATTTTGTACTCAAATGAGA+TGG | - | chr4_2:10127948-10127967 | None:intergenic | 25.0% |
| !!! | TAAGAAATGTTAAGTTGAGA+GGG | - | chr4_2:10128004-10128023 | None:intergenic | 25.0% |
| !!! | TTAAGAAATGTTAAGTTGAG+AGG | - | chr4_2:10128005-10128024 | None:intergenic | 25.0% |
| !!! | TAAATAAATGGTAACGGAAA+TGG | + | chr4_2:10128091-10128110 | Msa0588000:intron | 25.0% |
| ! | GAAGAGATAGATTAGATAAA+AGG | - | chr4_2:10128315-10128334 | None:intergenic | 25.0% |
| ! | AACTAGGTAACATTAATCTT+AGG | + | chr4_2:10128384-10128403 | Msa0588000:intron | 25.0% |
| ! | ACTAGGTAACATTAATCTTA+GGG | + | chr4_2:10128385-10128404 | Msa0588000:intron | 25.0% |
| !!! | TTTGACTTGTTTTTTCTGAC+GGG | + | chr4_2:10126976-10126995 | Msa0588000:intron | 30.0% |
| !!! | TCATTGTTGTTTTATGGTGT+TGG | + | chr4_2:10127001-10127020 | Msa0588000:intron | 30.0% |
| AGTTGGAAATTCAAATGCTA+AGG | - | chr4_2:10127126-10127145 | None:intergenic | 30.0% | |
| AAGTTGCATGTTCATTTACA+TGG | - | chr4_2:10127177-10127196 | None:intergenic | 30.0% | |
| TTCGAAGAAGTAAGAAATTG+AGG | + | chr4_2:10127288-10127307 | Msa0588000:CDS | 30.0% | |
| AGAAGTAAGAAATTGAGGAT+AGG | + | chr4_2:10127293-10127312 | Msa0588000:CDS | 30.0% | |
| GAAGTAAGAAATTGAGGATA+GGG | + | chr4_2:10127294-10127313 | Msa0588000:CDS | 30.0% | |
| ! | CGAATTTACTAAGTTTTGCA+CGG | - | chr4_2:10127427-10127446 | None:intergenic | 30.0% |
| CGTGCAAAACTTAGTAAATT+CGG | + | chr4_2:10127425-10127444 | Msa0588000:intron | 30.0% | |
| GTGCAAAACTTAGTAAATTC+GGG | + | chr4_2:10127426-10127445 | Msa0588000:intron | 30.0% | |
| ! | TGCATATCCAAATGATTTGT+GGG | - | chr4_2:10127566-10127585 | None:intergenic | 30.0% |
| TTGCATATCCAAATGATTTG+TGG | - | chr4_2:10127567-10127586 | None:intergenic | 30.0% | |
| AACTCACAACCAAAGTAATT+CGG | - | chr4_2:10127907-10127926 | None:intergenic | 30.0% | |
| TCTTTCTCTATTCTTACCAA+TGG | + | chr4_2:10128256-10128275 | Msa0588000:intron | 30.0% | |
| ATAATGTCCAACACAAAACT+AGG | + | chr4_2:10128368-10128387 | Msa0588000:intron | 30.0% | |
| !!! | AATGTTACCTAGTTTTGTGT+TGG | - | chr4_2:10128378-10128397 | None:intergenic | 30.0% |
| !!! | TTTGACTTGTTTTTTCTGAC+GGG | + | chr4_2:10126976-10126995 | Msa0588000:intron | 30.0% |
| !!! | TCATTGTTGTTTTATGGTGT+TGG | + | chr4_2:10127001-10127020 | Msa0588000:intron | 30.0% |
| AGTTGGAAATTCAAATGCTA+AGG | - | chr4_2:10127126-10127145 | None:intergenic | 30.0% | |
| AAGTTGCATGTTCATTTACA+TGG | - | chr4_2:10127177-10127196 | None:intergenic | 30.0% | |
| TTCGAAGAAGTAAGAAATTG+AGG | + | chr4_2:10127288-10127307 | Msa0588000:CDS | 30.0% | |
| AGAAGTAAGAAATTGAGGAT+AGG | + | chr4_2:10127293-10127312 | Msa0588000:CDS | 30.0% | |
| GAAGTAAGAAATTGAGGATA+GGG | + | chr4_2:10127294-10127313 | Msa0588000:CDS | 30.0% | |
| ! | CGAATTTACTAAGTTTTGCA+CGG | - | chr4_2:10127427-10127446 | None:intergenic | 30.0% |
| CGTGCAAAACTTAGTAAATT+CGG | + | chr4_2:10127425-10127444 | Msa0588000:intron | 30.0% | |
| GTGCAAAACTTAGTAAATTC+GGG | + | chr4_2:10127426-10127445 | Msa0588000:intron | 30.0% | |
| ! | TGCATATCCAAATGATTTGT+GGG | - | chr4_2:10127566-10127585 | None:intergenic | 30.0% |
| TTGCATATCCAAATGATTTG+TGG | - | chr4_2:10127567-10127586 | None:intergenic | 30.0% | |
| AACTCACAACCAAAGTAATT+CGG | - | chr4_2:10127907-10127926 | None:intergenic | 30.0% | |
| TCTTTCTCTATTCTTACCAA+TGG | + | chr4_2:10128256-10128275 | Msa0588000:intron | 30.0% | |
| ATAATGTCCAACACAAAACT+AGG | + | chr4_2:10128368-10128387 | Msa0588000:intron | 30.0% | |
| !!! | AATGTTACCTAGTTTTGTGT+TGG | - | chr4_2:10128378-10128397 | None:intergenic | 30.0% |
| !!! | CGGGTTTCATTGTTGTTTTA+TGG | + | chr4_2:10126995-10127014 | Msa0588000:intron | 35.0% |
| !!! | TTGTTGTTTTATGGTGTTGG+AGG | + | chr4_2:10127004-10127023 | Msa0588000:intron | 35.0% |
| TTATGTAAAAGCAGCCTTTC+TGG | + | chr4_2:10127203-10127222 | Msa0588000:intron | 35.0% | |
| !! | TAGATTTTTCAGCACCAGAA+AGG | - | chr4_2:10127220-10127239 | None:intergenic | 35.0% |
| ACACTTATAACTCTTCTAGC+TGG | + | chr4_2:10127239-10127258 | Msa0588000:CDS | 35.0% | |
| GTGTTTCATCCATTGTTAGT+AGG | - | chr4_2:10127343-10127362 | None:intergenic | 35.0% | |
| AGATGAACCCACAAATCATT+TGG | + | chr4_2:10127556-10127575 | Msa0588000:intron | 35.0% | |
| !! | TATGCAAAGCATTGATGCAT+TGG | + | chr4_2:10127580-10127599 | Msa0588000:intron | 35.0% |
| ! | AGTTTTTGCCAAAACCATGA+CGG | - | chr4_2:10127716-10127735 | None:intergenic | 35.0% |
| TAAATCACGGTGGTAATCTA+TGG | - | chr4_2:10127761-10127780 | None:intergenic | 35.0% | |
| TGAGTTTGATTAAATCACGG+TGG | - | chr4_2:10127771-10127790 | None:intergenic | 35.0% | |
| TGTGTAATGCCGAATTACTT+TGG | + | chr4_2:10127895-10127914 | Msa0588000:intron | 35.0% | |
| !! | AATGTTAAGTTGAGAGGGAT+AGG | - | chr4_2:10127999-10128018 | None:intergenic | 35.0% |
| !! | AATGGTAACGGAAATGGAAT+TGG | + | chr4_2:10128097-10128116 | Msa0588000:intron | 35.0% |
| CAAGAGTTTGAATGTACCTT+AGG | + | chr4_2:10128126-10128145 | Msa0588000:intron | 35.0% | |
| TACCAATGGAAATGCTCAAA+TGG | + | chr4_2:10128270-10128289 | Msa0588000:intron | 35.0% | |
| !!! | CGGGTTTCATTGTTGTTTTA+TGG | + | chr4_2:10126995-10127014 | Msa0588000:intron | 35.0% |
| !!! | TTGTTGTTTTATGGTGTTGG+AGG | + | chr4_2:10127004-10127023 | Msa0588000:intron | 35.0% |
| TTATGTAAAAGCAGCCTTTC+TGG | + | chr4_2:10127203-10127222 | Msa0588000:intron | 35.0% | |
| !! | TAGATTTTTCAGCACCAGAA+AGG | - | chr4_2:10127220-10127239 | None:intergenic | 35.0% |
| ACACTTATAACTCTTCTAGC+TGG | + | chr4_2:10127239-10127258 | Msa0588000:CDS | 35.0% | |
| GTGTTTCATCCATTGTTAGT+AGG | - | chr4_2:10127343-10127362 | None:intergenic | 35.0% | |
| AGATGAACCCACAAATCATT+TGG | + | chr4_2:10127556-10127575 | Msa0588000:intron | 35.0% | |
| !! | TATGCAAAGCATTGATGCAT+TGG | + | chr4_2:10127580-10127599 | Msa0588000:intron | 35.0% |
| ! | AGTTTTTGCCAAAACCATGA+CGG | - | chr4_2:10127716-10127735 | None:intergenic | 35.0% |
| TAAATCACGGTGGTAATCTA+TGG | - | chr4_2:10127761-10127780 | None:intergenic | 35.0% | |
| TGAGTTTGATTAAATCACGG+TGG | - | chr4_2:10127771-10127790 | None:intergenic | 35.0% | |
| TGTGTAATGCCGAATTACTT+TGG | + | chr4_2:10127895-10127914 | Msa0588000:intron | 35.0% | |
| !! | AATGTTAAGTTGAGAGGGAT+AGG | - | chr4_2:10127999-10128018 | None:intergenic | 35.0% |
| !! | AATGGTAACGGAAATGGAAT+TGG | + | chr4_2:10128097-10128116 | Msa0588000:intron | 35.0% |
| CAAGAGTTTGAATGTACCTT+AGG | + | chr4_2:10128126-10128145 | Msa0588000:intron | 35.0% | |
| TACCAATGGAAATGCTCAAA+TGG | + | chr4_2:10128270-10128289 | Msa0588000:intron | 35.0% | |
| !! | ACTTTGGTTCTCTGTTGTGT+GGG | + | chr4_2:10126926-10126945 | Msa0588000:intron | 40.0% |
| GAGATATTCCCAACACTTTG+TGG | + | chr4_2:10127316-10127335 | Msa0588000:CDS | 40.0% | |
| ! | TAGTAGGTCCACAAAGTGTT+GGG | - | chr4_2:10127327-10127346 | None:intergenic | 40.0% |
| TTAGTAGGTCCACAAAGTGT+TGG | - | chr4_2:10127328-10127347 | None:intergenic | 40.0% | |
| CTTTGTGGACCTACTAACAA+TGG | + | chr4_2:10127331-10127350 | Msa0588000:CDS | 40.0% | |
| GGGATAAGATGGTTATGACT+AGG | - | chr4_2:10127455-10127474 | None:intergenic | 40.0% | |
| ATTGATATCACGTGTCTGTG+AGG | + | chr4_2:10127658-10127677 | Msa0588000:intron | 40.0% | |
| CTCCATTTGAGCATTTCCAT+TGG | - | chr4_2:10128275-10128294 | None:intergenic | 40.0% | |
| !! | ACTTTGGTTCTCTGTTGTGT+GGG | + | chr4_2:10126926-10126945 | Msa0588000:intron | 40.0% |
| GAGATATTCCCAACACTTTG+TGG | + | chr4_2:10127316-10127335 | Msa0588000:CDS | 40.0% | |
| ! | TAGTAGGTCCACAAAGTGTT+GGG | - | chr4_2:10127327-10127346 | None:intergenic | 40.0% |
| TTAGTAGGTCCACAAAGTGT+TGG | - | chr4_2:10127328-10127347 | None:intergenic | 40.0% | |
| CTTTGTGGACCTACTAACAA+TGG | + | chr4_2:10127331-10127350 | Msa0588000:CDS | 40.0% | |
| GGGATAAGATGGTTATGACT+AGG | - | chr4_2:10127455-10127474 | None:intergenic | 40.0% | |
| ATTGATATCACGTGTCTGTG+AGG | + | chr4_2:10127658-10127677 | Msa0588000:intron | 40.0% | |
| CTCCATTTGAGCATTTCCAT+TGG | - | chr4_2:10128275-10128294 | None:intergenic | 40.0% | |
| CACACAACAGAGAACCAAAG+TGG | - | chr4_2:10126927-10126946 | None:intergenic | 45.0% | |
| !! | CACTTTGGTTCTCTGTTGTG+TGG | + | chr4_2:10126925-10126944 | Msa0588000:intron | 45.0% |
| ! | AACTCTTCTAGCTGGTGATG+TGG | + | chr4_2:10127247-10127266 | Msa0588000:CDS | 45.0% |
| ! | CACCTGTTCCGTACCTTTTT+CGG | + | chr4_2:10127360-10127379 | Msa0588000:CDS | 45.0% |
| GGATGTAGCCGAAAAAGGTA+CGG | - | chr4_2:10127371-10127390 | None:intergenic | 45.0% | |
| GTTTGACAGTGGGGATAAGA+TGG | - | chr4_2:10127466-10127485 | None:intergenic | 45.0% | |
| ATCCCCACTGTCAAACTATC+AGG | + | chr4_2:10127470-10127489 | Msa0588000:intron | 45.0% | |
| CTCCTGATAGTTTGACAGTG+GGG | - | chr4_2:10127475-10127494 | None:intergenic | 45.0% | |
| CCTCCTGATAGTTTGACAGT+GGG | - | chr4_2:10127476-10127495 | None:intergenic | 45.0% | |
| CCACTGTCAAACTATCAGGA+GGG | + | chr4_2:10127474-10127493 | Msa0588000:intron | 45.0% | |
| TATGAGTTTGTGTGCCGTCA+TGG | + | chr4_2:10127699-10127718 | Msa0588000:intron | 45.0% | |
| ! | TTTGTGTGCCGTCATGGTTT+TGG | + | chr4_2:10127705-10127724 | Msa0588000:intron | 45.0% |
| CACACAACAGAGAACCAAAG+TGG | - | chr4_2:10126927-10126946 | None:intergenic | 45.0% | |
| !! | CACTTTGGTTCTCTGTTGTG+TGG | + | chr4_2:10126925-10126944 | Msa0588000:intron | 45.0% |
| ! | AACTCTTCTAGCTGGTGATG+TGG | + | chr4_2:10127247-10127266 | Msa0588000:CDS | 45.0% |
| ! | CACCTGTTCCGTACCTTTTT+CGG | + | chr4_2:10127360-10127379 | Msa0588000:CDS | 45.0% |
| GGATGTAGCCGAAAAAGGTA+CGG | - | chr4_2:10127371-10127390 | None:intergenic | 45.0% | |
| GTTTGACAGTGGGGATAAGA+TGG | - | chr4_2:10127466-10127485 | None:intergenic | 45.0% | |
| ATCCCCACTGTCAAACTATC+AGG | + | chr4_2:10127470-10127489 | Msa0588000:intron | 45.0% | |
| CTCCTGATAGTTTGACAGTG+GGG | - | chr4_2:10127475-10127494 | None:intergenic | 45.0% | |
| CCTCCTGATAGTTTGACAGT+GGG | - | chr4_2:10127476-10127495 | None:intergenic | 45.0% | |
| CCACTGTCAAACTATCAGGA+GGG | + | chr4_2:10127474-10127493 | Msa0588000:intron | 45.0% | |
| TATGAGTTTGTGTGCCGTCA+TGG | + | chr4_2:10127699-10127718 | Msa0588000:intron | 45.0% | |
| ! | TTTGTGTGCCGTCATGGTTT+TGG | + | chr4_2:10127705-10127724 | Msa0588000:intron | 45.0% |
| GGTGATGTGGTTCGAAGTGA+AGG | + | chr4_2:10127260-10127279 | Msa0588000:CDS | 50.0% | |
| ! | AGCCGAAAAAGGTACGGAAC+AGG | - | chr4_2:10127365-10127384 | None:intergenic | 50.0% |
| GGTCTGGATGTAGCCGAAAA+AGG | - | chr4_2:10127376-10127395 | None:intergenic | 50.0% | |
| ! | TTTTCGGCTACATCCAGACC+AGG | + | chr4_2:10127376-10127395 | Msa0588000:CDS | 50.0% |
| TTACTAAGTCCCTCCTGGTC+TGG | - | chr4_2:10127392-10127411 | None:intergenic | 50.0% | |
| CTTGCTTACTAAGTCCCTCC+TGG | - | chr4_2:10127397-10127416 | None:intergenic | 50.0% | |
| GGAGGGACTTAGTAAGCAAG+AGG | + | chr4_2:10127397-10127416 | Msa0588000:CDS | 50.0% | |
| CCCACTGTCAAACTATCAGG+AGG | + | chr4_2:10127473-10127492 | Msa0588000:intron | 50.0% | |
| CCCTCCTGATAGTTTGACAG+TGG | - | chr4_2:10127477-10127496 | None:intergenic | 50.0% | |
| TATCAGGAGGGCTGAAAGCT+CGG | + | chr4_2:10127486-10127505 | Msa0588000:intron | 50.0% | |
| TGAAAGCTCGGGTGGTATTC+AGG | + | chr4_2:10127498-10127517 | Msa0588000:intron | 50.0% | |
| GATCCGCTGGATGAATTCAC+TGG | + | chr4_2:10127605-10127624 | Msa0588000:intron | 50.0% | |
| CCACCAGTGAATTCATCCAG+CGG | - | chr4_2:10127611-10127630 | None:intergenic | 50.0% | |
| ATCACGTGTCTGTGAGGATG+AGG | + | chr4_2:10127664-10127683 | Msa0588000:intron | 50.0% | |
| GTGTCTGTGAGGATGAGGAA+CGG | + | chr4_2:10127669-10127688 | Msa0588000:intron | 50.0% | |
| GGTGATGTGGTTCGAAGTGA+AGG | + | chr4_2:10127260-10127279 | Msa0588000:CDS | 50.0% | |
| ! | AGCCGAAAAAGGTACGGAAC+AGG | - | chr4_2:10127365-10127384 | None:intergenic | 50.0% |
| GGTCTGGATGTAGCCGAAAA+AGG | - | chr4_2:10127376-10127395 | None:intergenic | 50.0% | |
| ! | TTTTCGGCTACATCCAGACC+AGG | + | chr4_2:10127376-10127395 | Msa0588000:CDS | 50.0% |
| TTACTAAGTCCCTCCTGGTC+TGG | - | chr4_2:10127392-10127411 | None:intergenic | 50.0% | |
| CTTGCTTACTAAGTCCCTCC+TGG | - | chr4_2:10127397-10127416 | None:intergenic | 50.0% | |
| GGAGGGACTTAGTAAGCAAG+AGG | + | chr4_2:10127397-10127416 | Msa0588000:CDS | 50.0% | |
| CCCACTGTCAAACTATCAGG+AGG | + | chr4_2:10127473-10127492 | Msa0588000:intron | 50.0% | |
| CCCTCCTGATAGTTTGACAG+TGG | - | chr4_2:10127477-10127496 | None:intergenic | 50.0% | |
| TATCAGGAGGGCTGAAAGCT+CGG | + | chr4_2:10127486-10127505 | Msa0588000:intron | 50.0% | |
| TGAAAGCTCGGGTGGTATTC+AGG | + | chr4_2:10127498-10127517 | Msa0588000:intron | 50.0% | |
| GATCCGCTGGATGAATTCAC+TGG | + | chr4_2:10127605-10127624 | Msa0588000:intron | 50.0% | |
| CCACCAGTGAATTCATCCAG+CGG | - | chr4_2:10127611-10127630 | None:intergenic | 50.0% | |
| ATCACGTGTCTGTGAGGATG+AGG | + | chr4_2:10127664-10127683 | Msa0588000:intron | 50.0% | |
| GTGTCTGTGAGGATGAGGAA+CGG | + | chr4_2:10127669-10127688 | Msa0588000:intron | 50.0% | |
| ATCAGGAGGGCTGAAAGCTC+GGG | + | chr4_2:10127487-10127506 | Msa0588000:intron | 55.0% | |
| !! | TGATGCATTGGCTGATCCGC+TGG | + | chr4_2:10127592-10127611 | Msa0588000:intron | 55.0% |
| CCGCTGGATGAATTCACTGG+TGG | + | chr4_2:10127608-10127627 | Msa0588000:intron | 55.0% | |
| ATCAGGAGGGCTGAAAGCTC+GGG | + | chr4_2:10127487-10127506 | Msa0588000:intron | 55.0% | |
| !! | TGATGCATTGGCTGATCCGC+TGG | + | chr4_2:10127592-10127611 | Msa0588000:intron | 55.0% |
| CCGCTGGATGAATTCACTGG+TGG | + | chr4_2:10127608-10127627 | Msa0588000:intron | 55.0% | |
| TCGGCTACATCCAGACCAGG+AGG | + | chr4_2:10127379-10127398 | Msa0588000:CDS | 60.0% | |
| CGGCTACATCCAGACCAGGA+GGG | + | chr4_2:10127380-10127399 | Msa0588000:CDS | 60.0% | |
| TCGGCTACATCCAGACCAGG+AGG | + | chr4_2:10127379-10127398 | Msa0588000:CDS | 60.0% | |
| CGGCTACATCCAGACCAGGA+GGG | + | chr4_2:10127380-10127399 | Msa0588000:CDS | 60.0% | |
| AGGAGGGCTGAAAGCTCGGG+TGG | + | chr4_2:10127490-10127509 | Msa0588000:intron | 65.0% | |
| AGGAGGGCTGAAAGCTCGGG+TGG | + | chr4_2:10127490-10127509 | Msa0588000:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 10126897 | 10128552 | 10126897 | ID=Msa0588000;Name=Msa0588000 |
| chr4_2 | mRNA | 10126897 | 10128552 | 10126897 | ID=Msa0588000-mRNA-1;Parent=Msa0588000;Name=Msa0588000-mRNA-1;_AED=0.98;_eAED=1.00;_QI=0|0|0|0.33|1|1|3|0|79 |
| chr4_2 | exon | 10126897 | 10126904 | 10126897 | ID=Msa0588000-mRNA-1:exon:2818;Parent=Msa0588000-mRNA-1 |
| chr4_2 | exon | 10127217 | 10127437 | 10127217 | ID=Msa0588000-mRNA-1:exon:2819;Parent=Msa0588000-mRNA-1 |
| chr4_2 | exon | 10128542 | 10128552 | 10128542 | ID=Msa0588000-mRNA-1:exon:2820;Parent=Msa0588000-mRNA-1 |
| chr4_2 | CDS | 10126897 | 10126904 | 10126897 | ID=Msa0588000-mRNA-1:cds;Parent=Msa0588000-mRNA-1 |
| chr4_2 | CDS | 10127217 | 10127437 | 10127217 | ID=Msa0588000-mRNA-1:cds;Parent=Msa0588000-mRNA-1 |
| chr4_2 | CDS | 10128542 | 10128552 | 10128542 | ID=Msa0588000-mRNA-1:cds;Parent=Msa0588000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
