AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0011170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011170 MtrunA17_Chr1g0159731 98.485 198 3 0 1 198 1 198 5.73e-146 403
Msa0011170 MtrunA17_Chr7g0237741 28.467 137 90 2 27 155 65 201 1.26e-13 67.4
Msa0011170 MtrunA17_Chr2g0323971 28.244 131 86 2 38 160 79 209 6.52e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0011170 AT1G77230.1 53.953 215 78 3 1 195 1 214 3.63e-69 210

Find 56 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGCTTGGAATGCTTTAA+AGG 0.240159 1_1:+16855023 Msa0011170:CDS
ATAGAGAAGCATTGGGTAAA+TGG 0.246957 1_1:+16854926 Msa0011170:CDS
GAACATTTCACCATGAAGTT+TGG 0.271352 1_1:-16856619 None:intergenic
GGCAGAGCGCAGCTGAATTA+TGG 0.300886 1_1:+16856230 Msa0011170:CDS
GTTTACTGTCCCAAACTTCA+TGG 0.317130 1_1:+16856609 Msa0011170:three_prime_UTR
AAGCTTTCAATAGCATTATC+TGG 0.342887 1_1:-16856257 None:intergenic
AACATTTCACCATGAAGTTT+GGG 0.344744 1_1:-16856618 None:intergenic
CTCCGATTTCTAGTAAAACT+TGG 0.346366 1_1:-16855002 None:intergenic
AGAATTAGTTATGGTATGTT+TGG 0.361706 1_1:+16856734 Msa0011170:three_prime_UTR
TCCTGTGCTTCTTCATAATC+AGG 0.370373 1_1:-16856413 None:intergenic
TTATGTTTATGTGATAAATA+TGG 0.389059 1_1:+16856675 Msa0011170:three_prime_UTR
TAGAGAAGCATTGGGTAAAT+GGG 0.391319 1_1:+16854927 Msa0011170:CDS
GGGGAAGTATAGAGAAGCAT+TGG 0.393951 1_1:+16854918 Msa0011170:CDS
GTGAAATGTTCATAATTAGT+TGG 0.423407 1_1:+16856631 Msa0011170:three_prime_UTR
GTGTCGTTGTCTTGCTCAAA+AGG 0.431841 1_1:-16852333 None:intergenic
GCCTTCTGTTCATGCAAAGC+TGG 0.438897 1_1:-16854979 None:intergenic
AGAAAGCAACTTCACTCATC+AGG 0.449250 1_1:+16856470 Msa0011170:CDS
TTGCAGGCTTGGGTCACACT+TGG 0.449401 1_1:+16856209 Msa0011170:intron
TCATGCAAAGCTGGAACATC+AGG 0.451462 1_1:-16854970 None:intergenic
TTAGTTATGGTATGTTTGGT+TGG 0.459604 1_1:+16856738 Msa0011170:three_prime_UTR
TTGTGATGATTGTTCAGAAT+CGG 0.465839 1_1:-16852400 None:intergenic
TACTAGAAATCGGAGATGCT+TGG 0.470911 1_1:+16855010 Msa0011170:CDS
TGACAGAGCTTTAGCTCTCA+AGG 0.493209 1_1:+16856280 Msa0011170:CDS
GTGATAAATATGGTACTCCT+AGG 0.494465 1_1:+16856685 Msa0011170:three_prime_UTR
GTCGGTGAAGTGTGATAAAG+AGG 0.495915 1_1:-16852307 None:intergenic
GATAGATTAAGAATTAGTTA+TGG 0.498036 1_1:+16856725 Msa0011170:three_prime_UTR
ATTCAAAATCGTTATACTGT+AGG 0.507862 1_1:+16856503 Msa0011170:CDS
ATGGGAAGCTGCTCTTACAT+TGG 0.523234 1_1:+16854945 Msa0011170:CDS
ACTCAACATGATTCTTCTGA+TGG 0.523720 1_1:+16852360 Msa0011170:CDS
AATTAGTTGGAATGTATATG+TGG 0.539700 1_1:+16856644 Msa0011170:three_prime_UTR
TCCGATTTCTAGTAAAACTT+GGG 0.543228 1_1:-16855001 None:intergenic
CAGTGAAGAAGAGAAGAGGT+AGG 0.548190 1_1:+16852233 Msa0011170:five_prime_UTR
GCCTGATTATGAAGAAGCAC+AGG 0.549394 1_1:+16856412 Msa0011170:intron
TCCAGCTTTGCATGAACAGA+AGG 0.555181 1_1:+16854978 Msa0011170:CDS
GCTACGCAGTTTCAAACTCA+AGG 0.556440 1_1:+16852426 Msa0011170:CDS
GGAATGTATATGTGGAATGA+TGG 0.560762 1_1:+16856652 Msa0011170:three_prime_UTR
GGGAAGTATAGAGAAGCATT+GGG 0.566713 1_1:+16854919 Msa0011170:CDS
TCAAGGAGACAACCTTGCTA+TGG 0.579084 1_1:+16852443 Msa0011170:CDS
TGTGATAAAGAGGGTAAACA+AGG 0.580941 1_1:-16852297 None:intergenic
TTCAGAATCGGTAGAACGAA+CGG 0.582267 1_1:-16852388 None:intergenic
ATTGAAACCATCGTGGGCTG+AGG 0.582367 1_1:+16855418 Msa0011170:CDS
CGTTGTCTTGCTCAAAAGGA+AGG 0.585038 1_1:-16852329 None:intergenic
GTCTTGCTCAAAAGGAAGGT+CGG 0.592195 1_1:-16852325 None:intergenic
AGGTGAAAATGAAAGTAACA+TGG 0.593762 1_1:+16852253 Msa0011170:exon
GCTCATGAAGGTATACAACA+AGG 0.606551 1_1:+16856540 Msa0011170:exon
GGAACAGTGAAGAAGAGAAG+AGG 0.616195 1_1:+16852229 Msa0011170:five_prime_UTR
TGTCATTGTCAAAAGAACCT+AGG 0.621532 1_1:-16856702 None:intergenic
ATAAGAATGAAAGCTCATGA+AGG 0.628762 1_1:+16856528 Msa0011170:CDS
AACAGAAGAATACCATAGCA+AGG 0.632891 1_1:-16852455 None:intergenic
TACTGAATTGAAACCATCGT+GGG 0.637358 1_1:+16855412 Msa0011170:CDS
CTTCTTTATTAGACGTGACG+CGG 0.638624 1_1:-16856447 None:intergenic
CTCATGAAGGTATACAACAA+GGG 0.646868 1_1:+16856541 Msa0011170:exon
TCGGTGAAGTGTGATAAAGA+GGG 0.647175 1_1:-16852306 None:intergenic
TACACACGAATACATAGCAT+AGG 0.670434 1_1:-16856573 None:intergenic
TGTCGTACCTCAGCCCACGA+TGG 0.706434 1_1:-16855425 None:intergenic
CTACTGAATTGAAACCATCG+TGG 0.728758 1_1:+16855411 Msa0011170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTTGATTTTATTTATAT+GGG + chr1_1:16854098-16854117 Msa0011170:intron 10.0%
!!! AGGTTTTAAAAATATAAATA+GGG - chr1_1:16854298-16854317 None:intergenic 10.0%
!!! AAGGTTTTAAAAATATAAAT+AGG - chr1_1:16854299-16854318 None:intergenic 10.0%
!! CTAATAATACTAATTTAAAT+CGG - chr1_1:16854584-16854603 None:intergenic 10.0%
!! AAGAAAAGAAATTAAAAAAT+GGG + chr1_1:16854636-16854655 Msa0011170:intron 10.0%
!!! TTTTATGTTTTTGTTTTTGT+TGG + chr1_1:16852484-16852503 Msa0011170:intron 15.0%
!!! TTTATGTTTTTGTTTTTGTT+GGG + chr1_1:16852485-16852504 Msa0011170:intron 15.0%
!! TTTCGTATAAATTATAAACT+AGG - chr1_1:16852543-16852562 None:intergenic 15.0%
!!! TATTTAGATAAGTGAAATTT+TGG + chr1_1:16853477-16853496 Msa0011170:intron 15.0%
!!! CAAAGTTGATTTTATTTATA+TGG + chr1_1:16854097-16854116 Msa0011170:intron 15.0%
!! TTTAAAAATATAAATAGGGT+CGG - chr1_1:16854294-16854313 None:intergenic 15.0%
!! GAAGAAAAGAAATTAAAAAA+TGG + chr1_1:16854635-16854654 Msa0011170:intron 15.0%
!! ACATATATAATTGAAAACTT+CGG - chr1_1:16854792-16854811 None:intergenic 15.0%
!! ACTGATTATATAGTTTATAT+AGG - chr1_1:16855235-16855254 None:intergenic 15.0%
!! ATTAAAACTAATTGAGAAAA+TGG - chr1_1:16855533-16855552 None:intergenic 15.0%
!! ATAAAATTATAGCTTAGTTA+TGG + chr1_1:16855554-16855573 Msa0011170:intron 15.0%
!!! AATTAACCTTTTTTAAGTAT+TGG - chr1_1:16855940-16855959 None:intergenic 15.0%
!! ATACTTAAAAAAGGTTAATT+TGG + chr1_1:16855940-16855959 Msa0011170:intron 15.0%
!!! AAATTAATACAACTACTTTT+TGG + chr1_1:16856382-16856401 Msa0011170:intron 15.0%
!! TTATGTTTATGTGATAAATA+TGG + chr1_1:16856675-16856694 Msa0011170:three_prime_UTR 15.0%
!! ACTTATTTGAACTTATCTAT+TGG - chr1_1:16852931-16852950 None:intergenic 20.0%
!! CACATATAAAAGATAAGAAA+TGG + chr1_1:16853268-16853287 Msa0011170:intron 20.0%
!! GATCTATGAAAATAAAATGA+AGG - chr1_1:16853538-16853557 None:intergenic 20.0%
!!! TTAATCTAAAACCAAATGTT+GGG - chr1_1:16853601-16853620 None:intergenic 20.0%
!!! AATTGAAATTTTGTTCCTTA+AGG + chr1_1:16853675-16853694 Msa0011170:intron 20.0%
!! TTAAAAATATAAATAGGGTC+GGG - chr1_1:16854293-16854312 None:intergenic 20.0%
!!! TAGTATTATTAGCTCTAATA+TGG + chr1_1:16854592-16854611 Msa0011170:intron 20.0%
!! TTCTCTTAAAAGATTAAAAC+AGG - chr1_1:16854662-16854681 None:intergenic 20.0%
!!! TTAATTCTAAAAAGAAAAGC+AGG + chr1_1:16854684-16854703 Msa0011170:intron 20.0%
!! CATATATAATTGAAAACTTC+GGG - chr1_1:16854791-16854810 None:intergenic 20.0%
!!! ATTCTTAGTAGTTTTTTACT+TGG + chr1_1:16855354-16855373 Msa0011170:intron 20.0%
!!! ATGTGAATAAATTTTACAGA+GGG - chr1_1:16855467-16855486 None:intergenic 20.0%
!! GCAAATTTGACAATTATTAT+GGG - chr1_1:16855756-16855775 None:intergenic 20.0%
!! TGCAAATTTGACAATTATTA+TGG - chr1_1:16855757-16855776 None:intergenic 20.0%
!!! CACATGGTATTTTAATTAAA+TGG - chr1_1:16855852-16855871 None:intergenic 20.0%
!! GATAGATTAAGAATTAGTTA+TGG + chr1_1:16856725-16856744 Msa0011170:three_prime_UTR 20.0%
!! TGTGATTAAACTTTTTGCTT+AGG + chr1_1:16852208-16852227 Msa0011170:five_prime_UTR 25.0%
!! GCATACAGGATTTTTAAATA+GGG + chr1_1:16853056-16853075 Msa0011170:intron 25.0%
!! CATACAGGATTTTTAAATAG+GGG + chr1_1:16853057-16853076 Msa0011170:intron 25.0%
! TTTATATGTGCAATGTACTA+TGG - chr1_1:16853258-16853277 None:intergenic 25.0%
!!! AAGTGAAATTTTGGTGTTAA+AGG + chr1_1:16853486-16853505 Msa0011170:intron 25.0%
!! TAATCTAAAACCAAATGTTG+GGG - chr1_1:16853600-16853619 None:intergenic 25.0%
!! GTTAATCTAAAACCAAATGT+TGG - chr1_1:16853602-16853621 None:intergenic 25.0%
!!! ATTCTAGTTCCTAAAATTCA+GGG + chr1_1:16853803-16853822 Msa0011170:intron 25.0%
! GTTATATGATTGTAGTGATA+TGG - chr1_1:16853848-16853867 None:intergenic 25.0%
!!! TTACAAAAGCTTCTAGAATA+AGG - chr1_1:16853870-16853889 None:intergenic 25.0%
! CATGATAAGTTACCTTATAA+AGG - chr1_1:16854160-16854179 None:intergenic 25.0%
! AATAGTGTTTGTGCTTTATA+TGG - chr1_1:16854474-16854493 None:intergenic 25.0%
!! AGTTGTGATGAACTTAATTT+TGG + chr1_1:16855252-16855271 Msa0011170:intron 25.0%
!! CAATCAGACTTTATTTGTTT+GGG + chr1_1:16855299-16855318 Msa0011170:intron 25.0%
!! AATCAGACTTTATTTGTTTG+GGG + chr1_1:16855300-16855319 Msa0011170:intron 25.0%
! ACTTGGTATATGATAATTGA+CGG + chr1_1:16855371-16855390 Msa0011170:intron 25.0%
!! CATGTGAATAAATTTTACAG+AGG - chr1_1:16855468-16855487 None:intergenic 25.0%
! AAGATTATACACATACATAG+AGG - chr1_1:16855504-16855523 None:intergenic 25.0%
! TTCTTAAACTTCATAGAGAA+AGG + chr1_1:16855606-16855625 Msa0011170:intron 25.0%
! TGTGATATTGTGCATATAAT+TGG + chr1_1:16855644-16855663 Msa0011170:intron 25.0%
! GTGATATTGTGCATATAATT+GGG + chr1_1:16855645-16855664 Msa0011170:intron 25.0%
! AAAATATAGAGATCATGATG+CGG - chr1_1:16855674-16855693 None:intergenic 25.0%
!!! TCTATATTTTGACATGCATT+TGG + chr1_1:16855684-16855703 Msa0011170:intron 25.0%
! ATTTGACAATTATTATGGGA+CGG - chr1_1:16855752-16855771 None:intergenic 25.0%
!!! AAAGTGGAAAATATTGACTT+AGG - chr1_1:16855886-16855905 None:intergenic 25.0%
! AGTACACCAATACTTAAAAA+AGG + chr1_1:16855931-16855950 Msa0011170:intron 25.0%
! ATAACTGCTCTAGTATTATT+TGG - chr1_1:16856140-16856159 None:intergenic 25.0%
! ATTTCAATATTAATCCTTGC+AGG + chr1_1:16856193-16856212 Msa0011170:intron 25.0%
! ATTCAAAATCGTTATACTGT+AGG + chr1_1:16856503-16856522 Msa0011170:CDS 25.0%
! GTGAAATGTTCATAATTAGT+TGG + chr1_1:16856631-16856650 Msa0011170:three_prime_UTR 25.0%
! AATTAGTTGGAATGTATATG+TGG + chr1_1:16856644-16856663 Msa0011170:three_prime_UTR 25.0%
! AGAATTAGTTATGGTATGTT+TGG + chr1_1:16856734-16856753 Msa0011170:three_prime_UTR 25.0%
AGGTGAAAATGAAAGTAACA+TGG + chr1_1:16852253-16852272 Msa0011170:exon 30.0%
TTGTGATGATTGTTCAGAAT+CGG - chr1_1:16852403-16852422 None:intergenic 30.0%
ATTATAAACTAGGTGACACT+TGG - chr1_1:16852533-16852552 None:intergenic 30.0%
TGAAAACAGCCTATAAGTAT+AGG - chr1_1:16852805-16852824 None:intergenic 30.0%
! ATATTGCTACAGCGTTTTAA+GGG - chr1_1:16853025-16853044 None:intergenic 30.0%
! TATATTGCTACAGCGTTTTA+AGG - chr1_1:16853026-16853045 None:intergenic 30.0%
! GGCATACAGGATTTTTAAAT+AGG + chr1_1:16853055-16853074 Msa0011170:intron 30.0%
TTATTTCAAACCCCAACATT+TGG + chr1_1:16853587-16853606 Msa0011170:intron 30.0%
!!! GGTTTTAGATTAACTTCTGT+TGG + chr1_1:16853608-16853627 Msa0011170:intron 30.0%
! GAAATTTTGTTCCTTAAGGA+AGG + chr1_1:16853679-16853698 Msa0011170:intron 30.0%
CTACAAACTATCAATGACAA+TGG - chr1_1:16853729-16853748 None:intergenic 30.0%
!! CATTCTAGTTCCTAAAATTC+AGG + chr1_1:16853802-16853821 Msa0011170:intron 30.0%
!! TTCTAGTTCCTAAAATTCAG+GGG + chr1_1:16853804-16853823 Msa0011170:intron 30.0%
! AGAATATTCCCCTGAATTTT+AGG - chr1_1:16853815-16853834 None:intergenic 30.0%
! TTGTAATCTTCCATCCATTT+TGG + chr1_1:16853884-16853903 Msa0011170:intron 30.0%
CTCAAGTCTCAAAAACAAAT+GGG - chr1_1:16853974-16853993 None:intergenic 30.0%
TCTCAAGTCTCAAAAACAAA+TGG - chr1_1:16853975-16853994 None:intergenic 30.0%
CACTAGTTAAGACCTTTATA+AGG + chr1_1:16854145-16854164 Msa0011170:intron 30.0%
TGATCATTCGAACAACTATA+AGG - chr1_1:16854318-16854337 None:intergenic 30.0%
TCAAATTGAAGTGAAGAAGA+TGG - chr1_1:16854745-16854764 None:intergenic 30.0%
!! TCCGATTTCTAGTAAAACTT+GGG - chr1_1:16855004-16855023 None:intergenic 30.0%
!! GATGAACTTAATTTTGGCAA+TGG + chr1_1:16855258-16855277 Msa0011170:intron 30.0%
CCAAACAAATAAAGTCTGAT+TGG - chr1_1:16855301-16855320 None:intergenic 30.0%
! CCAATCAGACTTTATTTGTT+TGG + chr1_1:16855298-16855317 Msa0011170:intron 30.0%
CACAATATCACAAACACATA+TGG - chr1_1:16855636-16855655 None:intergenic 30.0%
TTAGGACTGTAAATGAAAAG+TGG - chr1_1:16855902-16855921 None:intergenic 30.0%
GCAAACTTAGTTTATCTGTA+AGG + chr1_1:16856058-16856077 Msa0011170:intron 30.0%
GTATTATTTGGTATGAACAG+TGG - chr1_1:16856128-16856147 None:intergenic 30.0%
TTGAAATAAATGCTTGCACT+GGG - chr1_1:16856180-16856199 None:intergenic 30.0%
ATTGAAATAAATGCTTGCAC+TGG - chr1_1:16856181-16856200 None:intergenic 30.0%
AAGCTTTCAATAGCATTATC+TGG - chr1_1:16856260-16856279 None:intergenic 30.0%
ATAAGAATGAAAGCTCATGA+AGG + chr1_1:16856528-16856547 Msa0011170:CDS 30.0%
AACATTTCACCATGAAGTTT+GGG - chr1_1:16856621-16856640 None:intergenic 30.0%
TTAGTTATGGTATGTTTGGT+TGG + chr1_1:16856738-16856757 Msa0011170:three_prime_UTR 30.0%
TGTGATAAAGAGGGTAAACA+AGG - chr1_1:16852300-16852319 None:intergenic 35.0%
ACTCAACATGATTCTTCTGA+TGG + chr1_1:16852360-16852379 Msa0011170:CDS 35.0%
AACAGAAGAATACCATAGCA+AGG - chr1_1:16852458-16852477 None:intergenic 35.0%
TACCAGTTAGAGTTATCATC+AGG + chr1_1:16852583-16852602 Msa0011170:intron 35.0%
TCCGTGTAACCTATACTTAT+AGG + chr1_1:16852793-16852812 Msa0011170:intron 35.0%
GCCTATAAGTATAGGTTACA+CGG - chr1_1:16852797-16852816 None:intergenic 35.0%
TGTAGCAATATAGCAAGTAG+TGG + chr1_1:16853034-16853053 Msa0011170:intron 35.0%
GGGTTCTTAAAAAAGGTTTG+CGG - chr1_1:16853184-16853203 None:intergenic 35.0%
TGCATCAGGGTTCTTAAAAA+AGG - chr1_1:16853191-16853210 None:intergenic 35.0%
CTTGAACAGATTCATGACAA+TGG + chr1_1:16853429-16853448 Msa0011170:intron 35.0%
!! AAGCGAACTTTTGTTACTTG+AGG - chr1_1:16853705-16853724 None:intergenic 35.0%
AGAATGAAAGCCTGTACTTT+CGG - chr1_1:16853788-16853807 None:intergenic 35.0%
! TGAGACCTCTTTAATCCTTT+TGG + chr1_1:16853990-16854009 Msa0011170:intron 35.0%
! GAGACCTCTTTAATCCTTTT+GGG + chr1_1:16853991-16854010 Msa0011170:intron 35.0%
AATACGTGTAATCAGTGCAT+TGG + chr1_1:16854182-16854201 Msa0011170:intron 35.0%
CCAAACTATAGACAAGACAA+AGG - chr1_1:16854373-16854392 None:intergenic 35.0%
CCTTTGTCTTGTCTATAGTT+TGG + chr1_1:16854370-16854389 Msa0011170:intron 35.0%
GCTTTATATGGCATTACACA+GGG - chr1_1:16854462-16854481 None:intergenic 35.0%
TGCTTTATATGGCATTACAC+AGG - chr1_1:16854463-16854482 None:intergenic 35.0%
TTTAAATCGGAAACACACTG+AGG - chr1_1:16854571-16854590 None:intergenic 35.0%
TTTCTTCCTGTTAAATGCTG+TGG - chr1_1:16854622-16854641 None:intergenic 35.0%
ACACATCATATGACATGACA+TGG - chr1_1:16854853-16854872 None:intergenic 35.0%
!! ATAGAGAAGCATTGGGTAAA+TGG + chr1_1:16854926-16854945 Msa0011170:CDS 35.0%
!! TAGAGAAGCATTGGGTAAAT+GGG + chr1_1:16854927-16854946 Msa0011170:CDS 35.0%
! GCCCAAGTTTTACTAGAAAT+CGG + chr1_1:16855000-16855019 Msa0011170:CDS 35.0%
!! CTCCGATTTCTAGTAAAACT+TGG - chr1_1:16855005-16855024 None:intergenic 35.0%
AGATGCTTGGAATGCTTTAA+AGG + chr1_1:16855023-16855042 Msa0011170:CDS 35.0%
! GACTTTATTTGTTTGGGGTT+TGG + chr1_1:16855305-16855324 Msa0011170:intron 35.0%
TACTGAATTGAAACCATCGT+GGG + chr1_1:16855412-16855431 Msa0011170:CDS 35.0%
AACAAGTGTGCCAATTATTG+TGG + chr1_1:16856018-16856037 Msa0011170:intron 35.0%
AATATTAATCCTTGCAGGCT+TGG + chr1_1:16856198-16856217 Msa0011170:intron 35.0%
ATATTAATCCTTGCAGGCTT+GGG + chr1_1:16856199-16856218 Msa0011170:intron 35.0%
! CTCATGAAGGTATACAACAA+GGG + chr1_1:16856541-16856560 Msa0011170:exon 35.0%
TACACACGAATACATAGCAT+AGG - chr1_1:16856576-16856595 None:intergenic 35.0%
GAACATTTCACCATGAAGTT+TGG - chr1_1:16856622-16856641 None:intergenic 35.0%
GGAATGTATATGTGGAATGA+TGG + chr1_1:16856652-16856671 Msa0011170:three_prime_UTR 35.0%
GTGATAAATATGGTACTCCT+AGG + chr1_1:16856685-16856704 Msa0011170:three_prime_UTR 35.0%
TGTCATTGTCAAAAGAACCT+AGG - chr1_1:16856705-16856724 None:intergenic 35.0%
TCGGTGAAGTGTGATAAAGA+GGG - chr1_1:16852309-16852328 None:intergenic 40.0%
TTCAGAATCGGTAGAACGAA+CGG - chr1_1:16852391-16852410 None:intergenic 40.0%
AGCCTGATGATAACTCTAAC+TGG - chr1_1:16852588-16852607 None:intergenic 40.0%
AAGCAATTGTGACACTGTTC+AGG - chr1_1:16852905-16852924 None:intergenic 40.0%
TGCATAGGATTCAAAGAGTG+TGG - chr1_1:16852986-16853005 None:intergenic 40.0%
TATAGCAAGTAGTGGCATAC+AGG + chr1_1:16853042-16853061 Msa0011170:intron 40.0%
CGATAACAATTGCAGTCACA+TGG + chr1_1:16853083-16853102 Msa0011170:intron 40.0%
ATACCGCTACACTGAAGTTT+AGG + chr1_1:16853210-16853229 Msa0011170:intron 40.0%
TACCGCTACACTGAAGTTTA+GGG + chr1_1:16853211-16853230 Msa0011170:intron 40.0%
TTCCCTAAACTTCAGTGTAG+CGG - chr1_1:16853216-16853235 None:intergenic 40.0%
! TACGTGCGTTTTCTGTACTT+TGG + chr1_1:16853370-16853389 Msa0011170:intron 40.0%
! ACAAGCTTAACCGAAAGTAC+AGG + chr1_1:16853775-16853794 Msa0011170:intron 40.0%
ATGCATACAACAGCATGCAT+GGG - chr1_1:16853921-16853940 None:intergenic 40.0%
AATGCATACAACAGCATGCA+TGG - chr1_1:16853922-16853941 None:intergenic 40.0%
! GCATGCTGTTGTATGCATTT+TGG + chr1_1:16853923-16853942 Msa0011170:intron 40.0%
AGGAAGACTCAACAGGAAAT+GGG - chr1_1:16854017-16854036 None:intergenic 40.0%
!! GTCTTCCTGATTCACTTTTC+TGG + chr1_1:16854029-16854048 Msa0011170:intron 40.0%
GATGCTAAGAGGTGGTAAAT+GGG - chr1_1:16854055-16854074 None:intergenic 40.0%
GAAAGTGATACGATGCTAAG+AGG - chr1_1:16854066-16854085 None:intergenic 40.0%
TGGTTCAAAGTTCATAGAGG+AGG - chr1_1:16854417-16854436 None:intergenic 40.0%
TGGTGGTTCAAAGTTCATAG+AGG - chr1_1:16854420-16854439 None:intergenic 40.0%
! AAACACACTGAGGTGTTTGT+TGG - chr1_1:16854561-16854580 None:intergenic 40.0%
AATACCACCATCTTTGTTGC+AGG + chr1_1:16854894-16854913 Msa0011170:intron 40.0%
!! GGGAAGTATAGAGAAGCATT+GGG + chr1_1:16854919-16854938 Msa0011170:CDS 40.0%
TACTAGAAATCGGAGATGCT+TGG + chr1_1:16855010-16855029 Msa0011170:CDS 40.0%
CTACTGAATTGAAACCATCG+TGG + chr1_1:16855411-16855430 Msa0011170:CDS 40.0%
TCTTCATGAAGCTTAGCAGT+TGG + chr1_1:16856307-16856326 Msa0011170:intron 40.0%
TCCTGTGCTTCTTCATAATC+AGG - chr1_1:16856416-16856435 None:intergenic 40.0%
CTTCTTTATTAGACGTGACG+CGG - chr1_1:16856450-16856469 None:intergenic 40.0%
AGAAAGCAACTTCACTCATC+AGG + chr1_1:16856470-16856489 Msa0011170:CDS 40.0%
! GCTCATGAAGGTATACAACA+AGG + chr1_1:16856540-16856559 Msa0011170:exon 40.0%
GTTTACTGTCCCAAACTTCA+TGG + chr1_1:16856609-16856628 Msa0011170:three_prime_UTR 40.0%
GGAACAGTGAAGAAGAGAAG+AGG + chr1_1:16852229-16852248 Msa0011170:five_prime_UTR 45.0%
CAGTGAAGAAGAGAAGAGGT+AGG + chr1_1:16852233-16852252 Msa0011170:five_prime_UTR 45.0%
GTCGGTGAAGTGTGATAAAG+AGG - chr1_1:16852310-16852329 None:intergenic 45.0%
GTCTTGCTCAAAAGGAAGGT+CGG - chr1_1:16852328-16852347 None:intergenic 45.0%
CGTTGTCTTGCTCAAAAGGA+AGG - chr1_1:16852332-16852351 None:intergenic 45.0%
! GTGTCGTTGTCTTGCTCAAA+AGG - chr1_1:16852336-16852355 None:intergenic 45.0%
GCTACGCAGTTTCAAACTCA+AGG + chr1_1:16852426-16852445 Msa0011170:CDS 45.0%
TCAAGGAGACAACCTTGCTA+TGG + chr1_1:16852443-16852462 Msa0011170:CDS 45.0%
AGAGTTATCATCAGGCTCGT+TGG + chr1_1:16852591-16852610 Msa0011170:intron 45.0%
GAGTTATCATCAGGCTCGTT+GGG + chr1_1:16852592-16852611 Msa0011170:intron 45.0%
!!! TGCTACAGCGTTTTAAGGGT+AGG - chr1_1:16853021-16853040 None:intergenic 45.0%
TGGTGATCCTTGACATCACA+CGG + chr1_1:16853103-16853122 Msa0011170:intron 45.0%
AACACAACCGTGTGATGTCA+AGG - chr1_1:16853113-16853132 None:intergenic 45.0%
ACACGGTTGTGTTGTGCTTT+CGG + chr1_1:16853120-16853139 Msa0011170:intron 45.0%
GTTACTTGAGGCCTTCCTTA+AGG - chr1_1:16853693-16853712 None:intergenic 45.0%
GAGGAAGATGCCAAAATGGA+TGG - chr1_1:16853897-16853916 None:intergenic 45.0%
TGGGCCCAAAAGGATTAAAG+AGG - chr1_1:16853998-16854017 None:intergenic 45.0%
CAGGAAGACTCAACAGGAAA+TGG - chr1_1:16854018-16854037 None:intergenic 45.0%
GTGAATCAGGAAGACTCAAC+AGG - chr1_1:16854024-16854043 None:intergenic 45.0%
ATGGGCCAGAAAAGTGAATC+AGG - chr1_1:16854037-16854056 None:intergenic 45.0%
CGATGCTAAGAGGTGGTAAA+TGG - chr1_1:16854056-16854075 None:intergenic 45.0%
AGTGATACGATGCTAAGAGG+TGG - chr1_1:16854063-16854082 None:intergenic 45.0%
AAATGTTAACCAGTGCCCCT+GGG + chr1_1:16854121-16854140 Msa0011170:intron 45.0%
!! GAATCCTTAAAAGAGTGCCC+CGG + chr1_1:16854249-16854268 Msa0011170:intron 45.0%
!! AATCCTTAAAAGAGTGCCCC+GGG + chr1_1:16854250-16854269 Msa0011170:intron 45.0%
! GGGGAAGTATAGAGAAGCAT+TGG + chr1_1:16854918-16854937 Msa0011170:CDS 45.0%
ATGGGAAGCTGCTCTTACAT+TGG + chr1_1:16854945-16854964 Msa0011170:CDS 45.0%
TCATGCAAAGCTGGAACATC+AGG - chr1_1:16854973-16854992 None:intergenic 45.0%
TCCAGCTTTGCATGAACAGA+AGG + chr1_1:16854978-16854997 Msa0011170:CDS 45.0%
GATAATTGACGGTCTCTGCA+TGG + chr1_1:16855382-16855401 Msa0011170:intron 45.0%
TGGTGTACTCGTTACTCGTT+AGG - chr1_1:16855920-16855939 None:intergenic 45.0%
GTGTGCCAATTATTGTGGCA+CGG + chr1_1:16856023-16856042 Msa0011170:intron 45.0%
!! TGACAGAGCTTTAGCTCTCA+AGG + chr1_1:16856280-16856299 Msa0011170:CDS 45.0%
! GCCTGATTATGAAGAAGCAC+AGG + chr1_1:16856412-16856431 Msa0011170:intron 45.0%
! AGGCTGCTACTTGACTGCAT+AGG - chr1_1:16853001-16853020 None:intergenic 50.0%
TTGTTTCACAGCCCAGTTCG+CGG + chr1_1:16853158-16853177 Msa0011170:intron 50.0%
CAGTGTAGCGGTATGCATCA+GGG - chr1_1:16853204-16853223 None:intergenic 50.0%
TCAGTGTAGCGGTATGCATC+AGG - chr1_1:16853205-16853224 None:intergenic 50.0%
GGGAGAGGAAGATGCCAAAA+TGG - chr1_1:16853901-16853920 None:intergenic 50.0%
TACAACAGCATGCATGGGAG+AGG - chr1_1:16853916-16853935 None:intergenic 50.0%
CTGTGCTCTGCAGTTTCACT+AGG + chr1_1:16853948-16853967 Msa0011170:intron 50.0%
CAACAGGAAATGGGCCCAAA+AGG - chr1_1:16854008-16854027 None:intergenic 50.0%
GAAATGTTAACCAGTGCCCC+TGG + chr1_1:16854120-16854139 Msa0011170:intron 50.0%
AATGTTAACCAGTGCCCCTG+GGG + chr1_1:16854122-16854141 Msa0011170:intron 50.0%
AGGTCTTAACTAGTGCCCCA+GGG - chr1_1:16854140-16854159 None:intergenic 50.0%
AAGGTCTTAACTAGTGCCCC+AGG - chr1_1:16854141-16854160 None:intergenic 50.0%
!! ATCCTTAAAAGAGTGCCCCG+GGG + chr1_1:16854251-16854270 Msa0011170:intron 50.0%
TCTTGTTAACGAGTACCCCC+GGG - chr1_1:16854270-16854289 None:intergenic 50.0%
! GTCTTGTTAACGAGTACCCC+CGG - chr1_1:16854271-16854290 None:intergenic 50.0%
!! CCATATCGATTTCGTGGTGG+TGG - chr1_1:16854437-16854456 None:intergenic 50.0%
CCACCACCACGAAATCGATA+TGG + chr1_1:16854434-16854453 Msa0011170:intron 50.0%
!! GTGCCATATCGATTTCGTGG+TGG - chr1_1:16854440-16854459 None:intergenic 50.0%
!! AGGGTGCCATATCGATTTCG+TGG - chr1_1:16854443-16854462 None:intergenic 50.0%
GGCATGCCACAGCATTTAAC+AGG + chr1_1:16854613-16854632 Msa0011170:intron 50.0%
ACCACCATCTTTGTTGCAGG+AGG + chr1_1:16854897-16854916 Msa0011170:intron 50.0%
CCACCATCTTTGTTGCAGGA+GGG + chr1_1:16854898-16854917 Msa0011170:intron 50.0%
CACCATCTTTGTTGCAGGAG+GGG + chr1_1:16854899-16854918 Msa0011170:intron 50.0%
TTCCCCTCCTGCAACAAAGA+TGG - chr1_1:16854904-16854923 None:intergenic 50.0%
GCCTTCTGTTCATGCAAAGC+TGG - chr1_1:16854982-16855001 None:intergenic 50.0%
! ATTGAAACCATCGTGGGCTG+AGG + chr1_1:16855418-16855437 Msa0011170:CDS 50.0%
TTAGGAGTGAGCGATGCACA+TGG - chr1_1:16855868-16855887 None:intergenic 50.0%
TGCCAATTATTGTGGCACGG+AGG + chr1_1:16856026-16856045 Msa0011170:intron 50.0%
GCCAATTATTGTGGCACGGA+GGG + chr1_1:16856027-16856046 Msa0011170:intron 50.0%
TCCCTCCGTGCCACAATAAT+TGG - chr1_1:16856031-16856050 None:intergenic 50.0%
GGCTCGTTGGGTAGTTCAAC+TGG + chr1_1:16852604-16852623 Msa0011170:intron 55.0%
GGTCTTAACTAGTGCCCCAG+GGG - chr1_1:16854139-16854158 None:intergenic 55.0%
!! TCCTTAAAAGAGTGCCCCGG+GGG + chr1_1:16854252-16854271 Msa0011170:intron 55.0%
CTTGTTAACGAGTACCCCCG+GGG - chr1_1:16854269-16854288 None:intergenic 55.0%
CCCTCCTGCAACAAAGATGG+TGG - chr1_1:16854901-16854920 None:intergenic 55.0%
ATTGACGGTCTCTGCATGGC+AGG + chr1_1:16855386-16855405 Msa0011170:intron 55.0%
AAGTGTGACCCAAGCCTGCA+AGG - chr1_1:16856210-16856229 None:intergenic 55.0%
TTGCAGGCTTGGGTCACACT+TGG + chr1_1:16856209-16856228 Msa0011170:intron 55.0%
GGCAGAGCGCAGCTGAATTA+TGG + chr1_1:16856230-16856249 Msa0011170:CDS 55.0%
AAGGTTTGCGGCCGCGAACT+GGG - chr1_1:16853172-16853191 None:intergenic 60.0%
AAAGGTTTGCGGCCGCGAAC+TGG - chr1_1:16853173-16853192 None:intergenic 60.0%
!! ACCCCCGGGGCACTCTTTTA+AGG - chr1_1:16854256-16854275 None:intergenic 60.0%
TGTCGTACCTCAGCCCACGA+TGG - chr1_1:16855428-16855447 None:intergenic 60.0%
! AACTAGTGCCCCAGGGGCAC+TGG - chr1_1:16854133-16854152 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 16852197 16856809 16852197 ID=Msa0011170;Name=Msa0011170
chr1_1 mRNA 16852197 16856809 16852197 ID=Msa0011170-mRNA-1;Parent=Msa0011170;Name=Msa0011170-mRNA-1;_AED=0.17;_eAED=0.17;_QI=64|1|1|1|1|1|5|262|198
chr1_1 exon 16852197 16852464 16852197 ID=Msa0011170-mRNA-1:exon:6159;Parent=Msa0011170-mRNA-1
chr1_1 exon 16854916 16855054 16854916 ID=Msa0011170-mRNA-1:exon:6160;Parent=Msa0011170-mRNA-1
chr1_1 exon 16855408 16855439 16855408 ID=Msa0011170-mRNA-1:exon:6161;Parent=Msa0011170-mRNA-1
chr1_1 exon 16856215 16856301 16856215 ID=Msa0011170-mRNA-1:exon:6162;Parent=Msa0011170-mRNA-1
chr1_1 exon 16856413 16856809 16856413 ID=Msa0011170-mRNA-1:exon:6163;Parent=Msa0011170-mRNA-1
chr1_1 five_prime_UTR 16852197 16852260 16852197 ID=Msa0011170-mRNA-1:five_prime_utr;Parent=Msa0011170-mRNA-1
chr1_1 CDS 16852261 16852464 16852261 ID=Msa0011170-mRNA-1:cds;Parent=Msa0011170-mRNA-1
chr1_1 CDS 16854916 16855054 16854916 ID=Msa0011170-mRNA-1:cds;Parent=Msa0011170-mRNA-1
chr1_1 CDS 16855408 16855439 16855408 ID=Msa0011170-mRNA-1:cds;Parent=Msa0011170-mRNA-1
chr1_1 CDS 16856215 16856301 16856215 ID=Msa0011170-mRNA-1:cds;Parent=Msa0011170-mRNA-1
chr1_1 CDS 16856413 16856547 16856413 ID=Msa0011170-mRNA-1:cds;Parent=Msa0011170-mRNA-1
chr1_1 three_prime_UTR 16856548 16856809 16856548 ID=Msa0011170-mRNA-1:three_prime_utr;Parent=Msa0011170-mRNA-1
Gene Sequence

>Msa0011170

ATGAAAGTAACATGGAAGAACACGAAGAAGAAGAAACCTTGTTTACCCTCTTTATCACACTTCACCGACCTTCCTTTTGAGCAAGACAACGACACTACTACTCAACATGATTCTTCTGATGGAACAACCGTTCGTTCTACCGATTCTGAACAATCATCACAATTAGCTACGCAGTTTCAAACTCAAGGAGACAACCTTGCTATGGAGGGGAAGTATAGAGAAGCATTGGGTAAATGGGAAGCTGCTCTTACATTGGCACCTGATGTTCCAGCTTTGCATGAACAGAAGGCCCAAGTTTTACTAGAAATCGGAGATGCTTGGAATGCTTTAAAGGCTGCAAGTCGAGCTACTGAATTGAAACCATCGTGGGCTGAGGCTTGGGTCACACTTGGCAGAGCGCAGCTGAATTATGGCGAGCCAGATAATGCTATTGAAAGCTTTGACAGAGCTTTAGCTCTCAAGCCTGATTATGAAGAAGCACAGGATGATAGAAAAACCGCGTCACGTCTAATAAAGAAGAGAAAGCAACTTCACTCATCAGGATTAAGTGAAATTCAAAATCGTTATACTGTAGGTGATAAGAATGAAAGCTCATGA

Protein sequence

>Msa0011170

MKVTWKNTKKKKPCLPSLSHFTDLPFEQDNDTTTQHDSSDGTTVRSTDSEQSSQLATQFQTQGDNLAMEGKYREALGKWEAALTLAPDVPALHEQKAQVLLEIGDAWNALKAASRATELKPSWAEAWVTLGRAQLNYGEPDNAIESFDRALALKPDYEEAQDDRKTASRLIKKRKQLHSSGLSEIQNRYTVGDKNESS*