Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604000 | XP_013456230.1 | 97.789 | 588 | 13 | 0 | 1 | 588 | 1 | 588 | 0.0 | 1199 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604000 | sp|Q9LXU9|IRKI_ARATH | 52.218 | 586 | 220 | 14 | 24 | 586 | 12 | 560 | 0.0 | 561 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604000 | A0A072ULJ6 | 97.789 | 588 | 13 | 0 | 1 | 588 | 1 | 588 | 0.0 | 1199 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604000 | Msa0688110 | 0.867823 | 1.030068e-65 | -8.615850e-47 |
| Msa0604000 | Msa0888900 | 0.812023 | 5.222184e-51 | -8.615850e-47 |
| Msa0604000 | Msa0936650 | 0.803276 | 3.765228e-49 | -8.615850e-47 |
| Msa0604000 | Msa0973890 | 0.820175 | 7.880835e-53 | -8.615850e-47 |
| Msa0604000 | Msa1182800 | 0.803637 | 3.170314e-49 | -8.615850e-47 |
| Msa0604000 | Msa1368150 | 0.804174 | 2.451187e-49 | -8.615850e-47 |
| Msa0604000 | Msa1456620 | 0.810750 | 9.870893e-51 | -8.615850e-47 |
| Msa0501770 | Msa0604000 | 0.808789 | 2.606103e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604000 | MtrunA17_Chr4g0033061 | 97.789 | 588 | 13 | 0 | 1 | 588 | 1 | 588 | 0.0 | 1199 |
| Msa0604000 | MtrunA17_Chr2g0329091 | 69.118 | 612 | 140 | 18 | 1 | 586 | 1 | 589 | 0.0 | 786 |
| Msa0604000 | MtrunA17_Chr8g0392321 | 38.889 | 324 | 176 | 4 | 265 | 584 | 150 | 455 | 1.08e-71 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0604000 | AT5G12900.1 | 52.218 | 586 | 220 | 14 | 24 | 586 | 12 | 560 | 0.0 | 561 |
| Msa0604000 | AT1G12330.1 | 34.459 | 444 | 247 | 11 | 150 | 583 | 63 | 472 | 2.26e-69 | 233 |
Find 126 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGACGGTCTATGAATTT+TGG | 0.116469 | 4_2:-49138839 | None:intergenic |
| TCCTCAGATTCTGCTCTATT+TGG | 0.161491 | 4_2:-49138251 | None:intergenic |
| TGTTTCTCTGTTCTGTTTCA+TGG | 0.173434 | 4_2:+49136699 | Msa0604000:exon |
| GCATTACCACTACTCTAAAT+TGG | 0.198308 | 4_2:+49138987 | Msa0604000:CDS |
| TTTCTTCAATGTTGTTTATA+AGG | 0.223578 | 4_2:-49138655 | None:intergenic |
| TCTCGTCATTCGTTGCTCTT+AGG | 0.269047 | 4_2:+49138879 | Msa0604000:CDS |
| TTGCTTGGACCCTGTGACCT+TGG | 0.298273 | 4_2:-49139169 | None:intergenic |
| CAGAACTGCCTTTGAGTACT+TGG | 0.306166 | 4_2:-49138741 | None:intergenic |
| ATGTTAAAGATAGGGTATTA+AGG | 0.310637 | 4_2:+49139221 | Msa0604000:CDS |
| CTTACTCCTGTAGCTTTCAT+TGG | 0.318767 | 4_2:-49138006 | None:intergenic |
| AACTACAAGACAGGAAATTA+AGG | 0.323447 | 4_2:+49136777 | Msa0604000:CDS |
| GATTTATGAAAGCTTCAAAA+TGG | 0.324347 | 4_2:-49138766 | None:intergenic |
| ACAAGAGCCGGTTACGGATT+TGG | 0.324635 | 4_2:-49137949 | None:intergenic |
| TTCTGAGATGCGATGTTCAT+TGG | 0.343847 | 4_2:+49138376 | Msa0604000:CDS |
| TGAGAAACAGAGCGAGAAAC+AGG | 0.345072 | 4_2:-49136892 | None:intergenic |
| AACAGAGAAACAGAACAAAA+TGG | 0.345493 | 4_2:-49136688 | None:intergenic |
| TATTAATTATCACATAGATT+TGG | 0.345494 | 4_2:-49139318 | None:intergenic |
| AATTCACTAGTTATGATTGC+AGG | 0.346045 | 4_2:-49138083 | None:intergenic |
| TGCAATCATAACTAGTGAAT+TGG | 0.348701 | 4_2:+49138085 | Msa0604000:CDS |
| CCCAACTTTCAGATATTGTT+AGG | 0.351274 | 4_2:-49137794 | None:intergenic |
| AGTTGGGATGAAGGAGAATC+AGG | 0.354966 | 4_2:+49137810 | Msa0604000:CDS |
| TAAGAGAAGAAACAGTTTAG+AGG | 0.360943 | 4_2:+49138025 | Msa0604000:CDS |
| CCACTACTCTAAATTGGATT+AGG | 0.362270 | 4_2:+49138993 | Msa0604000:CDS |
| TTAGGCATTTCGTGTGGTTC+TGG | 0.364717 | 4_2:-49137776 | None:intergenic |
| AGCTCTTAGTTCCACAGCTT+TGG | 0.364810 | 4_2:-49136809 | None:intergenic |
| AACCTTTGATCATCGCTATA+TGG | 0.369774 | 4_2:+49139135 | Msa0604000:CDS |
| ACCATGATCTTAACTTTGCT+TGG | 0.370606 | 4_2:-49139184 | None:intergenic |
| GAATTTAGAGACAGCTTATA+CGG | 0.371940 | 4_2:-49138719 | None:intergenic |
| TGCAGGGTTACATTTATTGC+AGG | 0.374680 | 4_2:-49138066 | None:intergenic |
| CTCTAAATTGGATTAGGCCT+TGG | 0.377636 | 4_2:+49138999 | Msa0604000:CDS |
| AAACCAGTGTACAAGATTAC+AGG | 0.381028 | 4_2:+49137844 | Msa0604000:CDS |
| ATTCTCACAGGGGTGAAAAC+AGG | 0.386116 | 4_2:-49136934 | None:intergenic |
| GCCTAACAATATCTGAAAGT+TGG | 0.386328 | 4_2:+49137793 | Msa0604000:CDS |
| TGATTTCGTGGTTGTTTCCT+CGG | 0.394790 | 4_2:+49138198 | Msa0604000:CDS |
| ATCCCTGTAATCTTGTACAC+TGG | 0.401675 | 4_2:-49137847 | None:intergenic |
| ACGGATTTGGTGTCATCAAC+AGG | 0.407923 | 4_2:-49137936 | None:intergenic |
| CGTGGCAGGAACAACAATAT+TGG | 0.408732 | 4_2:-49138132 | None:intergenic |
| CAGGACATATGTGAGATTCT+AGG | 0.411774 | 4_2:-49137917 | None:intergenic |
| CCTAACAATATCTGAAAGTT+GGG | 0.413549 | 4_2:+49137794 | Msa0604000:CDS |
| GTTAAGATCATGGTTAATCC+AGG | 0.427966 | 4_2:+49139193 | Msa0604000:CDS |
| TAAGGTGTAAGGTCCTTTGC+AGG | 0.436843 | 4_2:+49139239 | Msa0604000:CDS |
| GCTTCTTCAAGCTTTCTTTG+TGG | 0.438315 | 4_2:+49139030 | Msa0604000:CDS |
| TCTGAGATGCGATGTTCATT+GGG | 0.440475 | 4_2:+49138377 | Msa0604000:CDS |
| GATAAACCAAGTTCAAGAAA+AGG | 0.442732 | 4_2:+49137867 | Msa0604000:CDS |
| GATGACACCAAATCCGTAAC+CGG | 0.450685 | 4_2:+49137942 | Msa0604000:CDS |
| GAGACAGAAGATGGAGTACT+TGG | 0.456731 | 4_2:+49138406 | Msa0604000:CDS |
| AGAATCTGAGGATGTTTCTC+AGG | 0.458365 | 4_2:+49138262 | Msa0604000:CDS |
| AAAGCTTGAAGAAGCTGCTC+AGG | 0.463394 | 4_2:-49139022 | None:intergenic |
| GAATAGAGACGTGGCGTTGG+TGG | 0.463871 | 4_2:+49138349 | Msa0604000:CDS |
| CTCCTGTAGCTTTCATTGGT+AGG | 0.467705 | 4_2:-49138002 | None:intergenic |
| CTGGAATGAAGTACTGAGAA+AGG | 0.467976 | 4_2:+49138910 | Msa0604000:CDS |
| CAGAGAGGGAAATCAATTGA+TGG | 0.474699 | 4_2:+49138530 | Msa0604000:CDS |
| GAATGAGGAAGTAATGATAG+AGG | 0.484289 | 4_2:+49138577 | Msa0604000:CDS |
| ATAAACCAAGTTCAAGAAAA+GGG | 0.488864 | 4_2:+49137868 | Msa0604000:CDS |
| ATCATTACTTCCTCATTCAC+AGG | 0.490591 | 4_2:-49138572 | None:intergenic |
| AGATATGAGTCCAAGGTCAC+AGG | 0.493415 | 4_2:+49139159 | Msa0604000:CDS |
| TAGTTCCACAGCTTTGGCTA+TGG | 0.496028 | 4_2:-49136803 | None:intergenic |
| ATATCTGAAAGTTGGGATGA+AGG | 0.496923 | 4_2:+49137801 | Msa0604000:CDS |
| TCGCTTGGCGGTCTTCATGA+CGG | 0.500477 | 4_2:-49138853 | None:intergenic |
| ATCCCTTGCCTGCGTCTGCA+TGG | 0.501502 | 4_2:-49138468 | None:intergenic |
| AGATAGGGTATTAAGGTGTA+AGG | 0.504352 | 4_2:+49139228 | Msa0604000:CDS |
| ATTTGCACAAGAGCCGGTTA+CGG | 0.506731 | 4_2:-49137955 | None:intergenic |
| AAATGCAATTCTCAAAGTCT+TGG | 0.511355 | 4_2:-49138799 | None:intergenic |
| CAATATTGTTGTTCCTGCCA+CGG | 0.511774 | 4_2:+49138133 | Msa0604000:CDS |
| AGTCTGAAACGAAAAGCAAA+GGG | 0.516834 | 4_2:+49138174 | Msa0604000:CDS |
| TCTCAGGTTCTCAAGGACAT+AGG | 0.520348 | 4_2:+49138278 | Msa0604000:CDS |
| TATATGATTTGCACAAGAGC+CGG | 0.520360 | 4_2:-49137961 | None:intergenic |
| GGGAGAGTTGAGACAGAAGA+TGG | 0.523009 | 4_2:+49138397 | Msa0604000:CDS |
| AAAGCAAAGGGGTGATTTCG+TGG | 0.524133 | 4_2:+49138186 | Msa0604000:CDS |
| ATGACGAGAATTTCGCTTGG+CGG | 0.524799 | 4_2:-49138865 | None:intergenic |
| GACGAGTGGGAATCCGTGGC+AGG | 0.527984 | 4_2:-49138146 | None:intergenic |
| TTGCTCTTAGGAATTTGAGC+TGG | 0.530381 | 4_2:+49138891 | Msa0604000:CDS |
| CCCTTAAAACTCCCAATGGT+GGG | 0.532372 | 4_2:-49139099 | None:intergenic |
| CACCTACCAATGAAAGCTAC+AGG | 0.535955 | 4_2:+49138000 | Msa0604000:CDS |
| ACCCTTAAAACTCCCAATGG+TGG | 0.537328 | 4_2:-49139100 | None:intergenic |
| TGAAGAAGCTGCTCAGGCCA+AGG | 0.537390 | 4_2:-49139016 | None:intergenic |
| TCCAAGCAAAGTTAAGATCA+TGG | 0.542194 | 4_2:+49139183 | Msa0604000:CDS |
| TTATGCTTCTTCTTTAACCG+AGG | 0.546831 | 4_2:-49138215 | None:intergenic |
| AGGAGATAGAAACTTTGCAT+TGG | 0.549596 | 4_2:-49136866 | None:intergenic |
| GGATGTTTCTCAGGTTCTCA+AGG | 0.550773 | 4_2:+49138271 | Msa0604000:CDS |
| ATTCACTAGTTATGATTGCA+GGG | 0.550801 | 4_2:-49138082 | None:intergenic |
| TCTAAATTCCAAGTACTCAA+AGG | 0.555958 | 4_2:+49138733 | Msa0604000:CDS |
| CATAGGAATAATGTCGATTG+AGG | 0.560971 | 4_2:+49138295 | Msa0604000:CDS |
| AATCCATGCAGACGCAGGCA+AGG | 0.561183 | 4_2:+49138465 | Msa0604000:CDS |
| CCTAATCCAATTTAGAGTAG+TGG | 0.563144 | 4_2:-49138993 | None:intergenic |
| AAATTCAATGCCTGTGAATG+AGG | 0.569144 | 4_2:+49138562 | Msa0604000:CDS |
| CAGTCTGAAACGAAAAGCAA+AGG | 0.571815 | 4_2:+49138173 | Msa0604000:CDS |
| AAACTCAGAAACTACAAGAC+AGG | 0.574537 | 4_2:+49136768 | Msa0604000:CDS |
| TTAAGATCATGGTTAATCCA+GGG | 0.574929 | 4_2:+49139194 | Msa0604000:CDS |
| GAGAAACAGAGCGAGAAACA+GGG | 0.575679 | 4_2:-49136891 | None:intergenic |
| CTGTGGATTTGTACCTGCAA+AGG | 0.576366 | 4_2:-49139252 | None:intergenic |
| CTAGTGAATTGGAGAGTGCA+AGG | 0.578519 | 4_2:+49138096 | Msa0604000:CDS |
| CGAGAATAGAGACGTGGCGT+TGG | 0.578816 | 4_2:+49138346 | Msa0604000:CDS |
| TTCAGACTGAAACGACGAGT+GGG | 0.579873 | 4_2:-49138159 | None:intergenic |
| TTAGTAATCTTCCTCAGAGA+GGG | 0.583363 | 4_2:+49138516 | Msa0604000:CDS |
| TCCACAGCCTAAATAAAACT+AGG | 0.585458 | 4_2:+49139268 | Msa0604000:exon |
| TCCAAATAGAGCAGAATCTG+AGG | 0.587725 | 4_2:+49138250 | Msa0604000:CDS |
| TTGTGGCTGCAAAGTGCATG+TGG | 0.589553 | 4_2:+49139047 | Msa0604000:CDS |
| CTATCTTTAACATAAAACCC+TGG | 0.589585 | 4_2:-49139211 | None:intergenic |
| TTCCATATAGCGATGATCAA+AGG | 0.589637 | 4_2:-49139137 | None:intergenic |
| CTTCATGCTGCTTTAATGCG+AGG | 0.590460 | 4_2:+49136832 | Msa0604000:CDS |
| TTCTCACAGGGGTGAAAACA+GGG | 0.591379 | 4_2:-49136933 | None:intergenic |
| TGGAATGAAGTACTGAGAAA+GGG | 0.593329 | 4_2:+49138911 | Msa0604000:CDS |
| CGAATGACGAGAATTTCGCT+TGG | 0.594200 | 4_2:-49138868 | None:intergenic |
| GATATGAGTCCAAGGTCACA+GGG | 0.597366 | 4_2:+49139160 | Msa0604000:CDS |
| ATCCATGCAGACGCAGGCAA+GGG | 0.597592 | 4_2:+49138466 | Msa0604000:CDS |
| GAAACAATCCATGCAGACGC+AGG | 0.600891 | 4_2:+49138460 | Msa0604000:CDS |
| TTCTGGTTGTACGATGCAAG+TGG | 0.603230 | 4_2:-49137759 | None:intergenic |
| AATGAGGAAGTAATGATAGA+GGG | 0.603683 | 4_2:+49138578 | Msa0604000:CDS |
| AACCAGTGTACAAGATTACA+GGG | 0.611795 | 4_2:+49137845 | Msa0604000:CDS |
| AAACGACGAGTGGGAATCCG+TGG | 0.621697 | 4_2:-49138150 | None:intergenic |
| TCAACCCTTAAAACTCCCAA+TGG | 0.624174 | 4_2:-49139103 | None:intergenic |
| ACAGAGCGAGAAACAGGGGA+AGG | 0.627334 | 4_2:-49136886 | None:intergenic |
| TCAATTGATTTCCCTCTCTG+AGG | 0.633408 | 4_2:-49138527 | None:intergenic |
| ACATATGTGAGATTCTAGGT+TGG | 0.637680 | 4_2:-49137913 | None:intergenic |
| ATATGGAAGATATGAGTCCA+AGG | 0.637824 | 4_2:+49139152 | Msa0604000:CDS |
| TTTCAGACTGAAACGACGAG+TGG | 0.641833 | 4_2:-49138160 | None:intergenic |
| CTTAGTAATCTTCCTCAGAG+AGG | 0.648438 | 4_2:+49138515 | Msa0604000:CDS |
| AGAAACAGAGCGAGAAACAG+GGG | 0.648901 | 4_2:-49136890 | None:intergenic |
| GGTTGCCATAGCCAAAGCTG+TGG | 0.663368 | 4_2:+49136798 | Msa0604000:CDS |
| ATATTGTTAGGCATTTCGTG+TGG | 0.667524 | 4_2:-49137782 | None:intergenic |
| AAAGGGATACTACTACCTTG+TGG | 0.671368 | 4_2:+49137885 | Msa0604000:CDS |
| TCTGGTTGTACGATGCAAGT+GGG | 0.681776 | 4_2:-49137758 | None:intergenic |
| TCTAGGTTGGTAAAACCACA+AGG | 0.696108 | 4_2:-49137900 | None:intergenic |
| AGCGAACGAGAATAGAGACG+TGG | 0.717689 | 4_2:+49138340 | Msa0604000:CDS |
| GTCTGAAACGAAAAGCAAAG+GGG | 0.723496 | 4_2:+49138175 | Msa0604000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAGTTACTTTTGATT+TGG | + | chr4_2:49137043-49137062 | Msa0604000:intron | 15.0% |
| !!! | TTTTGAGAATAAATAAGATA+AGG | - | chr4_2:49137257-49137276 | None:intergenic | 15.0% |
| !! | TATTAATTATCACATAGATT+TGG | - | chr4_2:49139321-49139340 | None:intergenic | 15.0% |
| !! | ATCAAGAAAAACAAAATTCA+AGG | - | chr4_2:49136970-49136989 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTTCTTGATGAAA+AGG | + | chr4_2:49136974-49136993 | Msa0604000:intron | 20.0% |
| !!! | TTTGTTTTTCTTGATGAAAA+GGG | + | chr4_2:49136975-49136994 | Msa0604000:intron | 20.0% |
| !!! | TTTATTCCTTGTTTATTGTT+TGG | + | chr4_2:49137178-49137197 | Msa0604000:intron | 20.0% |
| !! | AGAATAAATAAGATAAGGAA+AGG | - | chr4_2:49137252-49137271 | None:intergenic | 20.0% |
| !! | ATGAAACTACTAAACAAAAA+AGG | - | chr4_2:49137314-49137333 | None:intergenic | 20.0% |
| !! | AGATAATAAACATCATCATT+AGG | - | chr4_2:49137396-49137415 | None:intergenic | 20.0% |
| !!! | GCATTTTCTCAAATTATTAT+TGG | - | chr4_2:49137539-49137558 | None:intergenic | 20.0% |
| !!! | TAAAAAGATAAATTTTGGAG+TGG | - | chr4_2:49137672-49137691 | None:intergenic | 20.0% |
| !! | TTTCTAAACATGAGAATTAT+TGG | + | chr4_2:49137718-49137737 | Msa0604000:intron | 20.0% |
| !!! | TTTCTTCAATGTTGTTTATA+AGG | - | chr4_2:49138658-49138677 | None:intergenic | 20.0% |
| !!! | AATTGCATTTTTCAAAAGAA+CGG | + | chr4_2:49138812-49138831 | Msa0604000:CDS | 20.0% |
| ! | TTGTTACTGTTATCATTGAT+AGG | + | chr4_2:49137087-49137106 | Msa0604000:intron | 25.0% |
| ! | TGTTACTGTTATCATTGATA+GGG | + | chr4_2:49137088-49137107 | Msa0604000:intron | 25.0% |
| ! | AAAACTTTAACTCTCATTCT+AGG | - | chr4_2:49137288-49137307 | None:intergenic | 25.0% |
| ! | ATATTGATACAAATCTTCTG+AGG | - | chr4_2:49137460-49137479 | None:intergenic | 25.0% |
| ! | ATAAACCAAGTTCAAGAAAA+GGG | + | chr4_2:49137868-49137887 | Msa0604000:CDS | 25.0% |
| !! | AGTTCAAATTTTCTGTCAAT+GGG | - | chr4_2:49138688-49138707 | None:intergenic | 25.0% |
| ! | GATTTATGAAAGCTTCAAAA+TGG | - | chr4_2:49138769-49138788 | None:intergenic | 25.0% |
| !!! | TTTTGAAGCTTTCATAAATC+AGG | + | chr4_2:49138769-49138788 | Msa0604000:CDS | 25.0% |
| !!! | AGGGTTTTATGTTAAAGATA+GGG | + | chr4_2:49139213-49139232 | Msa0604000:CDS | 25.0% |
| !! | ATGTTAAAGATAGGGTATTA+AGG | + | chr4_2:49139221-49139240 | Msa0604000:CDS | 25.0% |
| !!! | CATGTTTCCTAGTTTTATTT+AGG | - | chr4_2:49139278-49139297 | None:intergenic | 25.0% |
| AACAGAGAAACAGAACAAAA+TGG | - | chr4_2:49136691-49136710 | None:intergenic | 30.0% | |
| AACTACAAGACAGGAAATTA+AGG | + | chr4_2:49136777-49136796 | Msa0604000:CDS | 30.0% | |
| AAAGAAAGAAATTCTCACAG+GGG | - | chr4_2:49136947-49136966 | None:intergenic | 30.0% | |
| GAAAGAAAGAAATTCTCACA+GGG | - | chr4_2:49136948-49136967 | None:intergenic | 30.0% | |
| ! | TTCCTTGTTTATTGTTTGGT+TGG | + | chr4_2:49137182-49137201 | Msa0604000:intron | 30.0% |
| TACCAACCAAACAATAAACA+AGG | - | chr4_2:49137187-49137206 | None:intergenic | 30.0% | |
| GTTTAGTAGTTTCATTGTCA+TGG | + | chr4_2:49137319-49137338 | Msa0604000:intron | 30.0% | |
| ! | TCATTGTCATGGAACTTTTA+AGG | + | chr4_2:49137330-49137349 | Msa0604000:intron | 30.0% |
| ATTTGTGACTTTATGAAGAG+CGG | + | chr4_2:49137478-49137497 | Msa0604000:intron | 30.0% | |
| TTAAATGTAACCATGTGTGT+TGG | + | chr4_2:49137564-49137583 | Msa0604000:intron | 30.0% | |
| !!! | TAAATTTTGGAGTGGAAGTT+GGG | - | chr4_2:49137664-49137683 | None:intergenic | 30.0% |
| !!! | ATAAATTTTGGAGTGGAAGT+TGG | - | chr4_2:49137665-49137684 | None:intergenic | 30.0% |
| CCTAACAATATCTGAAAGTT+GGG | + | chr4_2:49137794-49137813 | Msa0604000:CDS | 30.0% | |
| GATAAACCAAGTTCAAGAAA+AGG | + | chr4_2:49137867-49137886 | Msa0604000:CDS | 30.0% | |
| TAAGAGAAGAAACAGTTTAG+AGG | + | chr4_2:49138025-49138044 | Msa0604000:CDS | 30.0% | |
| ATTCACTAGTTATGATTGCA+GGG | - | chr4_2:49138085-49138104 | None:intergenic | 30.0% | |
| AATTCACTAGTTATGATTGC+AGG | - | chr4_2:49138086-49138105 | None:intergenic | 30.0% | |
| TGCAATCATAACTAGTGAAT+TGG | + | chr4_2:49138085-49138104 | Msa0604000:CDS | 30.0% | |
| AATGAGGAAGTAATGATAGA+GGG | + | chr4_2:49138578-49138597 | Msa0604000:CDS | 30.0% | |
| ! | GAGTTCAAATTTTCTGTCAA+TGG | - | chr4_2:49138689-49138708 | None:intergenic | 30.0% |
| GAATTTAGAGACAGCTTATA+CGG | - | chr4_2:49138722-49138741 | None:intergenic | 30.0% | |
| TCTAAATTCCAAGTACTCAA+AGG | + | chr4_2:49138733-49138752 | Msa0604000:CDS | 30.0% | |
| AAATGCAATTCTCAAAGTCT+TGG | - | chr4_2:49138802-49138821 | None:intergenic | 30.0% | |
| TTAAGATCATGGTTAATCCA+GGG | + | chr4_2:49139194-49139213 | Msa0604000:CDS | 30.0% | |
| CTATCTTTAACATAAAACCC+TGG | - | chr4_2:49139214-49139233 | None:intergenic | 30.0% | |
| !! | CAGGGTTTTATGTTAAAGAT+AGG | + | chr4_2:49139212-49139231 | Msa0604000:CDS | 30.0% |
| TGTTTCTCTGTTCTGTTTCA+TGG | + | chr4_2:49136699-49136718 | Msa0604000:exon | 35.0% | |
| ! | GTTTTCAAAGACAACAACAG+TGG | + | chr4_2:49136745-49136764 | Msa0604000:CDS | 35.0% |
| AAACTCAGAAACTACAAGAC+AGG | + | chr4_2:49136768-49136787 | Msa0604000:CDS | 35.0% | |
| AGGAGATAGAAACTTTGCAT+TGG | - | chr4_2:49136869-49136888 | None:intergenic | 35.0% | |
| GGAAAGAAAGAAATTCTCAC+AGG | - | chr4_2:49136949-49136968 | None:intergenic | 35.0% | |
| ! | ATCCAAAGTACCTGAATTCA+TGG | + | chr4_2:49137117-49137136 | Msa0604000:intron | 35.0% |
| TTCCATGAATTCAGGTACTT+TGG | - | chr4_2:49137122-49137141 | None:intergenic | 35.0% | |
| CTTGCATATTCCATGAATTC+AGG | - | chr4_2:49137130-49137149 | None:intergenic | 35.0% | |
| CTTTAACTCTCATTCTAGGT+TGG | - | chr4_2:49137284-49137303 | None:intergenic | 35.0% | |
| GAATTCTAAACTGAATCCTG+TGG | + | chr4_2:49137364-49137383 | Msa0604000:intron | 35.0% | |
| ! | ACACCTTCAATCTAAAGTGT+CGG | + | chr4_2:49137624-49137643 | Msa0604000:intron | 35.0% |
| !!! | AAATTTTGGAGTGGAAGTTG+GGG | - | chr4_2:49137663-49137682 | None:intergenic | 35.0% |
| ATATTGTTAGGCATTTCGTG+TGG | - | chr4_2:49137785-49137804 | None:intergenic | 35.0% | |
| GCCTAACAATATCTGAAAGT+TGG | + | chr4_2:49137793-49137812 | Msa0604000:CDS | 35.0% | |
| CCCAACTTTCAGATATTGTT+AGG | - | chr4_2:49137797-49137816 | None:intergenic | 35.0% | |
| ATATCTGAAAGTTGGGATGA+AGG | + | chr4_2:49137801-49137820 | Msa0604000:CDS | 35.0% | |
| AAACCAGTGTACAAGATTAC+AGG | + | chr4_2:49137844-49137863 | Msa0604000:CDS | 35.0% | |
| AACCAGTGTACAAGATTACA+GGG | + | chr4_2:49137845-49137864 | Msa0604000:CDS | 35.0% | |
| ! | AGTATCCCTTTTCTTGAACT+TGG | - | chr4_2:49137876-49137895 | None:intergenic | 35.0% |
| ACATATGTGAGATTCTAGGT+TGG | - | chr4_2:49137916-49137935 | None:intergenic | 35.0% | |
| ! | TATATGATTTGCACAAGAGC+CGG | - | chr4_2:49137964-49137983 | None:intergenic | 35.0% |
| ! | AGTCTGAAACGAAAAGCAAA+GGG | + | chr4_2:49138174-49138193 | Msa0604000:CDS | 35.0% |
| TTATGCTTCTTCTTTAACCG+AGG | - | chr4_2:49138218-49138237 | None:intergenic | 35.0% | |
| ! | CATAGGAATAATGTCGATTG+AGG | + | chr4_2:49138295-49138314 | Msa0604000:CDS | 35.0% |
| TTAGTAATCTTCCTCAGAGA+GGG | + | chr4_2:49138516-49138535 | Msa0604000:CDS | 35.0% | |
| AAATTCAATGCCTGTGAATG+AGG | + | chr4_2:49138562-49138581 | Msa0604000:CDS | 35.0% | |
| ATCATTACTTCCTCATTCAC+AGG | - | chr4_2:49138575-49138594 | None:intergenic | 35.0% | |
| GAATGAGGAAGTAATGATAG+AGG | + | chr4_2:49138577-49138596 | Msa0604000:CDS | 35.0% | |
| ! | CATGACGGTCTATGAATTTT+GGG | - | chr4_2:49138841-49138860 | None:intergenic | 35.0% |
| ! | TCATGACGGTCTATGAATTT+TGG | - | chr4_2:49138842-49138861 | None:intergenic | 35.0% |
| !! | TGGAATGAAGTACTGAGAAA+GGG | + | chr4_2:49138911-49138930 | Msa0604000:CDS | 35.0% |
| GCATTACCACTACTCTAAAT+TGG | + | chr4_2:49138987-49139006 | Msa0604000:CDS | 35.0% | |
| ! | CCTAATCCAATTTAGAGTAG+TGG | - | chr4_2:49138996-49139015 | None:intergenic | 35.0% |
| CCACTACTCTAAATTGGATT+AGG | + | chr4_2:49138993-49139012 | Msa0604000:CDS | 35.0% | |
| ! | ATTTTCTTTCAACCCACCAT+TGG | + | chr4_2:49139087-49139106 | Msa0604000:CDS | 35.0% |
| ! | TTTTCTTTCAACCCACCATT+GGG | + | chr4_2:49139088-49139107 | Msa0604000:CDS | 35.0% |
| AACCTTTGATCATCGCTATA+TGG | + | chr4_2:49139135-49139154 | Msa0604000:CDS | 35.0% | |
| TTCCATATAGCGATGATCAA+AGG | - | chr4_2:49139140-49139159 | None:intergenic | 35.0% | |
| ATATGGAAGATATGAGTCCA+AGG | + | chr4_2:49139152-49139171 | Msa0604000:CDS | 35.0% | |
| TCCAAGCAAAGTTAAGATCA+TGG | + | chr4_2:49139183-49139202 | Msa0604000:CDS | 35.0% | |
| ACCATGATCTTAACTTTGCT+TGG | - | chr4_2:49139187-49139206 | None:intergenic | 35.0% | |
| GTTAAGATCATGGTTAATCC+AGG | + | chr4_2:49139193-49139212 | Msa0604000:CDS | 35.0% | |
| ! | AGATAGGGTATTAAGGTGTA+AGG | + | chr4_2:49139228-49139247 | Msa0604000:CDS | 35.0% |
| TCCACAGCCTAAATAAAACT+AGG | + | chr4_2:49139268-49139287 | Msa0604000:exon | 35.0% | |
| !!! | TCCTAGTTTTATTTAGGCTG+TGG | - | chr4_2:49139272-49139291 | None:intergenic | 35.0% |
| TAAGGAAAGGAGAACAACGA+TGG | - | chr4_2:49137239-49137258 | None:intergenic | 40.0% | |
| CATCATTAGGAATTTGCCAC+AGG | - | chr4_2:49137383-49137402 | None:intergenic | 40.0% | |
| AAACACAACACCAACACACA+TGG | - | chr4_2:49137577-49137596 | None:intergenic | 40.0% | |
| AGACCGACACTTTAGATTGA+AGG | - | chr4_2:49137630-49137649 | None:intergenic | 40.0% | |
| ATCCCTGTAATCTTGTACAC+TGG | - | chr4_2:49137850-49137869 | None:intergenic | 40.0% | |
| AAAGGGATACTACTACCTTG+TGG | + | chr4_2:49137885-49137904 | Msa0604000:CDS | 40.0% | |
| !! | TCTAGGTTGGTAAAACCACA+AGG | - | chr4_2:49137903-49137922 | None:intergenic | 40.0% |
| CAGGACATATGTGAGATTCT+AGG | - | chr4_2:49137920-49137939 | None:intergenic | 40.0% | |
| CTTACTCCTGTAGCTTTCAT+TGG | - | chr4_2:49138009-49138028 | None:intergenic | 40.0% | |
| TGCAGGGTTACATTTATTGC+AGG | - | chr4_2:49138069-49138088 | None:intergenic | 40.0% | |
| ! | CAATATTGTTGTTCCTGCCA+CGG | + | chr4_2:49138133-49138152 | Msa0604000:CDS | 40.0% |
| ! | CAGTCTGAAACGAAAAGCAA+AGG | + | chr4_2:49138173-49138192 | Msa0604000:CDS | 40.0% |
| ! | GTCTGAAACGAAAAGCAAAG+GGG | + | chr4_2:49138175-49138194 | Msa0604000:CDS | 40.0% |
| ! | TGATTTCGTGGTTGTTTCCT+CGG | + | chr4_2:49138198-49138217 | Msa0604000:CDS | 40.0% |
| TCCAAATAGAGCAGAATCTG+AGG | + | chr4_2:49138250-49138269 | Msa0604000:CDS | 40.0% | |
| TCCTCAGATTCTGCTCTATT+TGG | - | chr4_2:49138254-49138273 | None:intergenic | 40.0% | |
| AGAATCTGAGGATGTTTCTC+AGG | + | chr4_2:49138262-49138281 | Msa0604000:CDS | 40.0% | |
| !! | TTCTGAGATGCGATGTTCAT+TGG | + | chr4_2:49138376-49138395 | Msa0604000:CDS | 40.0% |
| ! | TCTGAGATGCGATGTTCATT+GGG | + | chr4_2:49138377-49138396 | Msa0604000:CDS | 40.0% |
| CTTAGTAATCTTCCTCAGAG+AGG | + | chr4_2:49138515-49138534 | Msa0604000:CDS | 40.0% | |
| ! | TCAATTGATTTCCCTCTCTG+AGG | - | chr4_2:49138530-49138549 | None:intergenic | 40.0% |
| CAGAGAGGGAAATCAATTGA+TGG | + | chr4_2:49138530-49138549 | Msa0604000:CDS | 40.0% | |
| TTGCTCTTAGGAATTTGAGC+TGG | + | chr4_2:49138891-49138910 | Msa0604000:CDS | 40.0% | |
| !! | CTGGAATGAAGTACTGAGAA+AGG | + | chr4_2:49138910-49138929 | Msa0604000:CDS | 40.0% |
| ! | CTCTAAATTGGATTAGGCCT+TGG | + | chr4_2:49138999-49139018 | Msa0604000:CDS | 40.0% |
| GCTTCTTCAAGCTTTCTTTG+TGG | + | chr4_2:49139030-49139049 | Msa0604000:CDS | 40.0% | |
| TCAACCCTTAAAACTCCCAA+TGG | - | chr4_2:49139106-49139125 | None:intergenic | 40.0% | |
| ! | TAGTTCCACAGCTTTGGCTA+TGG | - | chr4_2:49136806-49136825 | None:intergenic | 45.0% |
| AGCTCTTAGTTCCACAGCTT+TGG | - | chr4_2:49136812-49136831 | None:intergenic | 45.0% | |
| !! | CTTCATGCTGCTTTAATGCG+AGG | + | chr4_2:49136832-49136851 | Msa0604000:CDS | 45.0% |
| AGAAACAGAGCGAGAAACAG+GGG | - | chr4_2:49136893-49136912 | None:intergenic | 45.0% | |
| GAGAAACAGAGCGAGAAACA+GGG | - | chr4_2:49136894-49136913 | None:intergenic | 45.0% | |
| TGAGAAACAGAGCGAGAAAC+AGG | - | chr4_2:49136895-49136914 | None:intergenic | 45.0% | |
| TTCTCACAGGGGTGAAAACA+GGG | - | chr4_2:49136936-49136955 | None:intergenic | 45.0% | |
| ATTCTCACAGGGGTGAAAAC+AGG | - | chr4_2:49136937-49136956 | None:intergenic | 45.0% | |
| TGACGAGTCAGTATTGTGTC+CGG | - | chr4_2:49137513-49137532 | None:intergenic | 45.0% | |
| AGTGGAAGTTGGGGAATTAC+AGG | - | chr4_2:49137654-49137673 | None:intergenic | 45.0% | |
| TCTGGTTGTACGATGCAAGT+GGG | - | chr4_2:49137761-49137780 | None:intergenic | 45.0% | |
| ! | TTCTGGTTGTACGATGCAAG+TGG | - | chr4_2:49137762-49137781 | None:intergenic | 45.0% |
| TTAGGCATTTCGTGTGGTTC+TGG | - | chr4_2:49137779-49137798 | None:intergenic | 45.0% | |
| AGTTGGGATGAAGGAGAATC+AGG | + | chr4_2:49137810-49137829 | Msa0604000:CDS | 45.0% | |
| !! | ACGGATTTGGTGTCATCAAC+AGG | - | chr4_2:49137939-49137958 | None:intergenic | 45.0% |
| GATGACACCAAATCCGTAAC+CGG | + | chr4_2:49137942-49137961 | Msa0604000:CDS | 45.0% | |
| ATTTGCACAAGAGCCGGTTA+CGG | - | chr4_2:49137958-49137977 | None:intergenic | 45.0% | |
| CACCTACCAATGAAAGCTAC+AGG | + | chr4_2:49138000-49138019 | Msa0604000:CDS | 45.0% | |
| CTCCTGTAGCTTTCATTGGT+AGG | - | chr4_2:49138005-49138024 | None:intergenic | 45.0% | |
| ! | CTAGTGAATTGGAGAGTGCA+AGG | + | chr4_2:49138096-49138115 | Msa0604000:CDS | 45.0% |
| CGTGGCAGGAACAACAATAT+TGG | - | chr4_2:49138135-49138154 | None:intergenic | 45.0% | |
| TTCAGACTGAAACGACGAGT+GGG | - | chr4_2:49138162-49138181 | None:intergenic | 45.0% | |
| TTTCAGACTGAAACGACGAG+TGG | - | chr4_2:49138163-49138182 | None:intergenic | 45.0% | |
| AAAGCAAAGGGGTGATTTCG+TGG | + | chr4_2:49138186-49138205 | Msa0604000:CDS | 45.0% | |
| GGATGTTTCTCAGGTTCTCA+AGG | + | chr4_2:49138271-49138290 | Msa0604000:CDS | 45.0% | |
| TCTCAGGTTCTCAAGGACAT+AGG | + | chr4_2:49138278-49138297 | Msa0604000:CDS | 45.0% | |
| ! | GAGACAGAAGATGGAGTACT+TGG | + | chr4_2:49138406-49138425 | Msa0604000:CDS | 45.0% |
| CAGAACTGCCTTTGAGTACT+TGG | - | chr4_2:49138744-49138763 | None:intergenic | 45.0% | |
| ATGACGAGAATTTCGCTTGG+CGG | - | chr4_2:49138868-49138887 | None:intergenic | 45.0% | |
| CGAATGACGAGAATTTCGCT+TGG | - | chr4_2:49138871-49138890 | None:intergenic | 45.0% | |
| TCTCGTCATTCGTTGCTCTT+AGG | + | chr4_2:49138879-49138898 | Msa0604000:CDS | 45.0% | |
| AAAGCTTGAAGAAGCTGCTC+AGG | - | chr4_2:49139025-49139044 | None:intergenic | 45.0% | |
| ! | ACCCACCATTGGGAGTTTTA+AGG | + | chr4_2:49139098-49139117 | Msa0604000:CDS | 45.0% |
| CCCTTAAAACTCCCAATGGT+GGG | - | chr4_2:49139102-49139121 | None:intergenic | 45.0% | |
| !! | CCCACCATTGGGAGTTTTAA+GGG | + | chr4_2:49139099-49139118 | Msa0604000:CDS | 45.0% |
| ACCCTTAAAACTCCCAATGG+TGG | - | chr4_2:49139103-49139122 | None:intergenic | 45.0% | |
| AGATATGAGTCCAAGGTCAC+AGG | + | chr4_2:49139159-49139178 | Msa0604000:CDS | 45.0% | |
| GATATGAGTCCAAGGTCACA+GGG | + | chr4_2:49139160-49139179 | Msa0604000:CDS | 45.0% | |
| TAAGGTGTAAGGTCCTTTGC+AGG | + | chr4_2:49139239-49139258 | Msa0604000:CDS | 45.0% | |
| CTGTGGATTTGTACCTGCAA+AGG | - | chr4_2:49139255-49139274 | None:intergenic | 45.0% | |
| !!! | AAAATTAAAAAGATAAATTT+TGG | - | chr4_2:49137677-49137696 | None:intergenic | 5.0% |
| !!! | TTTTAATTTTTTTATTTTGA+TGG | + | chr4_2:49137687-49137706 | Msa0604000:intron | 5.0% |
| TGAAGAGCGGACACAAACAC+CGG | + | chr4_2:49137491-49137510 | Msa0604000:intron | 50.0% | |
| ACAAGAGCCGGTTACGGATT+TGG | - | chr4_2:49137952-49137971 | None:intergenic | 50.0% | |
| AGCGAACGAGAATAGAGACG+TGG | + | chr4_2:49138340-49138359 | Msa0604000:CDS | 50.0% | |
| GGGAGAGTTGAGACAGAAGA+TGG | + | chr4_2:49138397-49138416 | Msa0604000:CDS | 50.0% | |
| GAAACAATCCATGCAGACGC+AGG | + | chr4_2:49138460-49138479 | Msa0604000:CDS | 50.0% | |
| TTGTGGCTGCAAAGTGCATG+TGG | + | chr4_2:49139047-49139066 | Msa0604000:CDS | 50.0% | |
| GGTTGCCATAGCCAAAGCTG+TGG | + | chr4_2:49136798-49136817 | Msa0604000:CDS | 55.0% | |
| ACAGAGCGAGAAACAGGGGA+AGG | - | chr4_2:49136889-49136908 | None:intergenic | 55.0% | |
| AAACGACGAGTGGGAATCCG+TGG | - | chr4_2:49138153-49138172 | None:intergenic | 55.0% | |
| CGAGAATAGAGACGTGGCGT+TGG | + | chr4_2:49138346-49138365 | Msa0604000:CDS | 55.0% | |
| ! | GAATAGAGACGTGGCGTTGG+TGG | + | chr4_2:49138349-49138368 | Msa0604000:CDS | 55.0% |
| AATCCATGCAGACGCAGGCA+AGG | + | chr4_2:49138465-49138484 | Msa0604000:CDS | 55.0% | |
| ATCCATGCAGACGCAGGCAA+GGG | + | chr4_2:49138466-49138485 | Msa0604000:CDS | 55.0% | |
| TCGCTTGGCGGTCTTCATGA+CGG | - | chr4_2:49138856-49138875 | None:intergenic | 55.0% | |
| TGAAGAAGCTGCTCAGGCCA+AGG | - | chr4_2:49139019-49139038 | None:intergenic | 55.0% | |
| TTGCTTGGACCCTGTGACCT+TGG | - | chr4_2:49139172-49139191 | None:intergenic | 55.0% | |
| GCCTCACACACGTCAGACGT+CGG | + | chr4_2:49137599-49137618 | Msa0604000:intron | 60.0% | |
| TCCGACGTCTGACGTGTGTG+AGG | - | chr4_2:49137603-49137622 | None:intergenic | 60.0% | |
| ATCCCTTGCCTGCGTCTGCA+TGG | - | chr4_2:49138471-49138490 | None:intergenic | 60.0% | |
| GACGAGTGGGAATCCGTGGC+AGG | - | chr4_2:49138149-49138168 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 49136648 | 49139419 | 49136648 | ID=Msa0604000;Name=Msa0604000 |
| chr4_2 | mRNA | 49136648 | 49139419 | 49136648 | ID=Msa0604000-mRNA-1;Parent=Msa0604000;Name=Msa0604000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=70|1|1|1|1|1|2|140|588 |
| chr4_2 | exon | 49136648 | 49136948 | 49136648 | ID=Msa0604000-mRNA-1:exon:11331;Parent=Msa0604000-mRNA-1 |
| chr4_2 | exon | 49137744 | 49139419 | 49137744 | ID=Msa0604000-mRNA-1:exon:11332;Parent=Msa0604000-mRNA-1 |
| chr4_2 | five_prime_UTR | 49136648 | 49136717 | 49136648 | ID=Msa0604000-mRNA-1:five_prime_utr;Parent=Msa0604000-mRNA-1 |
| chr4_2 | CDS | 49136718 | 49136948 | 49136718 | ID=Msa0604000-mRNA-1:cds;Parent=Msa0604000-mRNA-1 |
| chr4_2 | CDS | 49137744 | 49139279 | 49137744 | ID=Msa0604000-mRNA-1:cds;Parent=Msa0604000-mRNA-1 |
| chr4_2 | three_prime_UTR | 49139280 | 49139419 | 49139280 | ID=Msa0604000-mRNA-1:three_prime_utr;Parent=Msa0604000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
