AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0973890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973890 MtrunA17_Chr6g0452771 94.215 484 28 0 1 484 1 484 0.0 924
Msa0973890 MtrunA17_Chr6g0454141 81.781 483 88 0 1 483 1 483 0.0 823
Msa0973890 MtrunA17_Chr6g0454261 79.089 483 101 0 1 483 1 483 0.0 798
Msa0973890 MtrunA17_Chr6g0453961 75.876 485 116 1 1 484 10 494 0.0 777
Msa0973890 MtrunA17_Chr6g0454151 78.719 484 101 1 1 484 1 482 0.0 771
Msa0973890 MtrunA17_Chr6g0454191 77.686 484 107 1 1 483 1 484 0.0 768
Msa0973890 MtrunA17_Chr6g0454181 75.155 483 120 0 1 483 1 483 0.0 756
Msa0973890 MtrunA17_Chr6g0454331 75.104 482 118 1 4 483 1 482 0.0 752
Msa0973890 MtrunA17_Chr6g0454401 75.000 484 120 1 1 483 1 484 0.0 746
Msa0973890 MtrunA17_Chr8g0359821 74.534 483 121 2 1 483 1 481 0.0 733
Msa0973890 MtrunA17_Chr6g0454361 75.052 485 120 1 1 484 1 485 0.0 732
Msa0973890 MtrunA17_Chr6g0454201 75.826 484 116 1 1 483 1 484 0.0 727
Msa0973890 MtrunA17_Chr6g0454131 74.948 483 120 1 1 483 1 482 0.0 726
Msa0973890 MtrunA17_Chr6g0454121 74.534 483 122 1 1 483 1 482 0.0 725
Msa0973890 MtrunA17_Chr6g0454291 74.739 479 121 0 4 482 1 479 0.0 721
Msa0973890 MtrunA17_Chr6g0454301 72.257 483 130 2 1 482 254 733 0.0 720
Msa0973890 MtrunA17_Chr6g0454301 79.386 228 47 0 251 478 1 228 2.45e-127 387
Msa0973890 MtrunA17_Chr6g0454211 73.651 482 127 0 2 483 289 770 0.0 717
Msa0973890 MtrunA17_Chr6g0454211 62.178 349 50 3 131 479 1 267 1.66e-135 409
Msa0973890 MtrunA17_Chr6g0453951 71.340 485 138 1 1 484 47 531 0.0 717
Msa0973890 MtrunA17_Chr3g0078841 71.488 484 134 2 1 483 1 481 0.0 712
Msa0973890 MtrunA17_Chr6g0454341 71.281 484 135 2 1 483 1 481 0.0 711
Msa0973890 MtrunA17_Chr8g0336331 71.694 484 132 3 1 483 1 480 0.0 706
Msa0973890 MtrunA17_Chr6g0454351 70.370 486 125 2 1 484 1 469 0.0 704
Msa0973890 MtrunA17_Chr5g0423981 70.928 485 104 3 1 484 1 449 0.0 701
Msa0973890 MtrunA17_Chr7g0217881 71.488 484 120 1 1 484 1 466 0.0 689
Msa0973890 MtrunA17_Chr6g0454321 69.053 475 143 2 1 474 1 472 0.0 674
Msa0973890 MtrunA17_Chr6g0454321 68.000 125 40 0 2 126 496 620 8.74e-52 186
Msa0973890 MtrunA17_Chr6g0454251 70.812 394 115 0 5 398 2 395 0.0 595
Msa0973890 MtrunA17_Chr5g0426431 54.357 482 212 5 3 482 5 480 0.0 527
Msa0973890 MtrunA17_Chr2g0278711 54.697 479 205 5 7 481 8 478 0.0 525
Msa0973890 MtrunA17_Chr3g0092641 54.071 479 212 5 5 481 7 479 0.0 520
Msa0973890 MtrunA17_Chr6g0454171 70.670 358 57 3 131 484 1 314 1.40e-176 498
Msa0973890 MtrunA17_Chr6g0454271 75.517 290 71 0 194 483 1 290 4.99e-164 465
Msa0973890 MtrunA17_Chr3g0118771 48.428 477 238 4 7 480 18 489 3.95e-161 465
Msa0973890 MtrunA17_Chr3g0118671 48.008 477 240 4 7 480 3 474 1.14e-160 464
Msa0973890 MtrunA17_Chr8g0355011 61.273 377 103 2 107 483 32 365 1.38e-157 451
Msa0973890 MtrunA17_Chr4g0050341 48.734 474 235 4 8 476 17 487 1.61e-157 456
Msa0973890 MtrunA17_Chr3g0118691 46.266 482 251 4 2 480 7 483 1.11e-156 454
Msa0973890 MtrunA17_Chr3g0118711 46.764 479 247 4 5 480 8 481 1.38e-156 453
Msa0973890 MtrunA17_Chr3g0118701 45.851 482 253 4 2 480 7 483 1.21e-154 449
Msa0973890 MtrunA17_Chr3g0118751 45.588 476 224 5 7 480 3 445 1.85e-143 419
Msa0973890 MtrunA17_Chr3g0118661 45.895 475 250 3 7 479 10 479 4.37e-140 411
Msa0973890 MtrunA17_Chr6g0454221 82.533 229 39 1 251 478 1 229 4.92e-134 389
Msa0973890 MtrunA17_Chr5g0426401 56.869 313 129 4 173 481 2 312 5.89e-122 358
Msa0973890 MtrunA17_Chr6g0453981 68.831 231 72 0 131 361 1 231 6.19e-111 327
Msa0973890 MtrunA17_Chr8g0336271 61.694 248 91 2 1 248 1 244 9.97e-104 311
Msa0973890 MtrunA17_Chr3g0118721 50.345 290 141 2 194 480 1 290 4.75e-101 305
Msa0973890 MtrunA17_Chr6g0454231 63.333 240 85 1 1 240 241 477 3.89e-100 308
Msa0973890 MtrunA17_Chr6g0454231 62.353 255 57 3 227 480 3 219 1.36e-96 300
Msa0973890 MtrunA17_Chr6g0454281 71.282 195 56 0 1 195 1 195 1.65e-97 293
Msa0973890 MtrunA17_Chr6g0453941 66.667 219 72 1 132 349 54 272 9.25e-97 293
Msa0973890 MtrunA17_Chr6g0453941 74.603 63 11 2 1 62 1 59 6.64e-21 92.4
Msa0973890 MtrunA17_Chr6g0454371 78.161 174 38 0 310 483 1 174 2.29e-94 283
Msa0973890 MtrunA17_Chr3g0112771 37.632 473 257 12 12 480 14 452 2.53e-94 293
Msa0973890 MtrunA17_Chr5g0412131 35.306 490 273 12 6 479 8 469 4.67e-87 275
Msa0973890 MtrunA17_Chr5g0412101 34.694 490 277 11 6 479 8 470 1.79e-86 273
Msa0973890 MtrunA17_Chr5g0412111 34.382 477 288 12 9 479 4 461 3.24e-86 272
Msa0973890 MtrunA17_Chr3g0112761 33.474 475 276 12 12 480 10 450 4.02e-83 264
Msa0973890 MtrunA17_Chr6g0454111 73.494 166 41 2 168 330 18 183 1.55e-79 245
Msa0973890 MtrunA17_Chr4g0032331 33.333 474 262 13 12 471 10 443 2.72e-79 254
Msa0973890 MtrunA17_Chr8g0336261 82.482 137 24 0 310 446 1 137 7.11e-78 239
Msa0973890 MtrunA17_Chr1g0207981 29.878 492 303 11 6 481 9 474 2.00e-73 239
Msa0973890 MtrunA17_Chr7g0218811 32.211 475 275 12 9 477 14 447 8.47e-70 229
Msa0973890 MtrunA17_Chr6g0464881 30.913 482 293 13 9 483 10 458 2.76e-69 228
Msa0973890 MtrunA17_Chr7g0218831 30.947 475 280 12 9 477 5 437 7.79e-68 224
Msa0973890 MtrunA17_Chr7g0218821 31.959 485 274 13 9 477 4 448 1.91e-67 223
Msa0973890 MtrunA17_Chr7g0218841 31.799 478 271 13 9 476 5 437 2.30e-66 220
Msa0973890 MtrunA17_Chr4g0053501 28.279 488 314 12 6 483 7 468 1.72e-65 219
Msa0973890 MtrunA17_Chr3g0098111 29.569 487 300 11 10 479 9 469 8.29e-65 217
Msa0973890 MtrunA17_Chr7g0249981 30.977 481 288 15 8 480 23 467 1.12e-64 217
Msa0973890 MtrunA17_Chr5g0414331 29.645 479 286 13 10 477 13 451 5.07e-63 212
Msa0973890 MtrunA17_Chr5g0414321 29.522 481 290 14 10 480 11 452 9.27e-63 211
Msa0973890 MtrunA17_Chr5g0431441 30.801 487 283 15 10 480 18 466 2.38e-62 210
Msa0973890 MtrunA17_Chr7g0218791 29.938 481 283 12 9 477 4 442 5.24e-62 209
Msa0973890 MtrunA17_Chr1g0207971 29.289 478 298 11 10 479 8 453 6.51e-62 209
Msa0973890 MtrunA17_Chr7g0250001 29.253 482 299 13 6 480 2 448 2.20e-61 207
Msa0973890 MtrunA17_Chr5g0401721 29.495 495 304 15 5 480 3 471 3.18e-61 207
Msa0973890 MtrunA17_Chr6g0464921 29.400 483 302 12 6 481 7 457 1.90e-60 205
Msa0973890 MtrunA17_Chr4g0053321 29.328 491 309 13 5 483 19 483 2.57e-60 206
Msa0973890 MtrunA17_Chr6g0464871 30.453 486 288 15 10 484 23 469 4.41e-60 204
Msa0973890 MtrunA17_Chr5g0431361 30.165 484 282 11 10 479 12 453 9.88e-60 203
Msa0973890 MtrunA17_Chr1g0161351 30.832 493 286 14 10 479 37 497 2.52e-59 203
Msa0973890 MtrunA17_Chr8g0380531 31.042 480 289 12 10 479 10 457 3.47e-59 201
Msa0973890 MtrunA17_Chr1g0207951 29.263 475 303 8 10 479 124 570 5.15e-59 210
Msa0973890 MtrunA17_Chr1g0207951 30.816 490 278 17 12 479 658 1108 1.70e-53 194
Msa0973890 MtrunA17_Chr6g0454381 64.789 142 50 0 131 272 1 142 8.13e-59 190
Msa0973890 MtrunA17_Chr1g0207831 31.198 484 287 15 12 479 10 463 2.93e-58 199
Msa0973890 MtrunA17_Chr6g0464841 30.290 482 280 16 10 476 11 451 6.57e-58 198
Msa0973890 MtrunA17_Chr1g0207861 29.876 482 305 9 10 479 8 468 8.32e-58 198
Msa0973890 MtrunA17_Chr8g0365811 29.376 497 302 16 4 479 489 957 1.57e-57 205
Msa0973890 MtrunA17_Chr8g0365811 29.095 464 282 14 12 453 11 449 8.52e-51 186
Msa0973890 MtrunA17_Chr6g0464861 30.480 479 284 15 9 476 10 450 3.48e-57 196
Msa0973890 MtrunA17_Chr8g0377921 29.920 498 288 17 9 480 2 464 7.64e-57 195
Msa0973890 MtrunA17_Chr5g0431401 29.569 487 278 12 10 479 10 448 1.50e-56 194
Msa0973890 MtrunA17_Chr5g0393591 28.067 481 273 10 10 479 17 435 1.50e-55 192
Msa0973890 MtrunA17_Chr5g0431421 28.893 488 282 12 10 480 10 449 3.27e-54 188
Msa0973890 MtrunA17_Chr7g0243631 28.056 499 305 13 10 479 13 486 1.38e-53 187
Msa0973890 MtrunA17_Chr7g0243931 28.516 512 302 13 2 479 9 490 1.29e-52 185
Msa0973890 MtrunA17_Chr5g0431371 29.243 489 277 13 10 479 10 448 1.62e-52 183
Msa0973890 MtrunA17_Chr7g0275681 28.743 501 298 15 9 480 11 481 4.76e-52 183
Msa0973890 MtrunA17_Chr7g0243951 27.866 506 312 13 2 479 3 483 1.50e-51 182
Msa0973890 MtrunA17_Chr4g0011051 29.142 501 308 14 8 480 7 488 3.15e-51 181
Msa0973890 MtrunA17_Chr7g0249931 26.994 489 305 15 5 480 35 484 1.39e-49 176
Msa0973890 MtrunA17_Chr3g0106231 28.364 483 286 15 10 480 18 452 3.62e-49 175
Msa0973890 MtrunA17_Chr5g0426411 49.718 177 81 4 1 174 1 172 4.54e-49 166
Msa0973890 MtrunA17_Chr3g0122001 29.150 494 299 15 10 479 486 952 6.70e-49 180
Msa0973890 MtrunA17_Chr3g0122001 30.426 493 295 16 10 479 6 473 4.65e-47 175
Msa0973890 MtrunA17_Chr7g0265041 27.811 507 310 15 9 483 10 492 7.82e-49 175
Msa0973890 MtrunA17_Chr7g0243771 27.218 496 309 12 10 479 6 475 1.88e-48 173
Msa0973890 MtrunA17_Chr6g0462571 29.859 355 211 8 136 475 126 457 2.61e-48 173
Msa0973890 MtrunA17_Chr7g0243801 27.495 491 304 12 15 479 12 476 3.72e-48 172
Msa0973890 MtrunA17_Chr3g0121991 28.803 493 302 15 10 479 79 545 7.40e-48 173
Msa0973890 MtrunA17_Chr7g0232401 26.694 487 297 12 10 470 6 458 6.46e-47 169
Msa0973890 MtrunA17_Chr5g0419761 28.180 511 312 18 4 483 3 489 7.21e-47 169
Msa0973890 MtrunA17_Chr7g0243681 26.653 499 307 13 10 479 11 479 9.30e-47 169
Msa0973890 MtrunA17_Chr4g0044511 25.806 496 321 12 10 484 40 509 1.14e-46 169
Msa0973890 MtrunA17_Chr8g0377941 28.542 487 297 13 12 480 9 462 2.30e-46 167
Msa0973890 MtrunA17_Chr7g0232391 30.585 376 224 10 121 478 108 464 3.40e-46 167
Msa0973890 MtrunA17_Chr5g0448551 27.412 456 294 14 7 455 4 429 4.44e-46 166
Msa0973890 MtrunA17_Chr7g0243861 26.587 504 317 15 10 484 14 493 4.45e-46 167
Msa0973890 MtrunA17_Chr6g0462531 29.944 354 212 7 136 475 129 460 5.42e-46 166
Msa0973890 MtrunA17_Chr8g0366391 28.745 494 303 16 10 479 9 477 5.83e-46 167
Msa0973890 MtrunA17_Chr5g0432731 33.117 308 178 7 185 480 6 297 7.13e-46 162
Msa0973890 MtrunA17_Chr6g0462521 30.423 355 200 7 136 475 124 446 7.60e-46 166
Msa0973890 MtrunA17_Chr1g0207931 34.100 261 152 4 232 479 244 497 1.80e-45 166
Msa0973890 MtrunA17_Chr1g0207931 29.487 156 98 4 10 161 92 239 3.14e-11 65.5
Msa0973890 MtrunA17_Chr8g0373301 32.123 358 194 12 121 455 111 442 2.56e-45 164
Msa0973890 MtrunA17_Chr7g0265101 29.447 506 303 18 8 482 7 489 2.99e-45 165
Msa0973890 MtrunA17_Chr4g0072761 29.426 401 246 10 82 479 86 452 6.09e-45 163
Msa0973890 MtrunA17_Chr7g0232311 31.956 363 204 9 134 476 121 460 6.33e-45 163
Msa0973890 MtrunA17_Chr4g0072771 26.819 481 307 12 7 479 22 465 8.48e-45 163
Msa0973890 MtrunA17_Chr7g0265051 27.362 508 309 18 8 482 7 487 1.46e-44 163
Msa0973890 MtrunA17_Chr6g0462541 28.169 355 216 8 136 475 129 459 1.60e-44 162
Msa0973890 MtrunA17_Chr6g0449931 28.911 505 275 19 6 472 2 460 2.27e-44 162
Msa0973890 MtrunA17_Chr1g0179901 26.820 522 306 16 1 480 7 494 2.71e-44 162
Msa0973890 MtrunA17_Chr4g0014061 26.680 491 302 12 13 477 12 470 3.01e-44 162
Msa0973890 MtrunA17_Chr7g0265141 29.577 497 305 14 10 480 9 486 4.39e-44 161
Msa0973890 MtrunA17_Chr4g0060511 26.719 509 302 16 10 479 11 487 8.19e-44 161
Msa0973890 MtrunA17_Chr5g0419771 25.299 502 320 13 10 480 36 513 1.72e-43 160
Msa0973890 MtrunA17_Chr7g0243871 26.667 510 294 14 7 479 6 472 3.18e-43 159
Msa0973890 MtrunA17_Chr8g0347281 26.946 501 293 16 9 482 17 471 6.56e-43 158
Msa0973890 MtrunA17_Chr5g0428081 27.126 494 301 14 15 479 16 479 6.66e-43 158
Msa0973890 MtrunA17_Chr5g0401851 28.210 514 303 18 1 479 1 483 8.00e-43 158
Msa0973890 MtrunA17_Chr5g0440421 27.907 516 314 19 1 480 1 494 9.03e-43 158
Msa0973890 MtrunA17_Chr7g0243781 25.506 494 307 12 15 479 14 475 9.84e-43 158
Msa0973890 MtrunA17_Chr8g0335141 29.675 492 276 19 7 468 6 457 6.34e-42 155
Msa0973890 MtrunA17_Chr8g0336741 30.184 381 222 9 121 482 115 470 6.91e-42 155
Msa0973890 MtrunA17_Chr6g0462551 24.900 498 297 14 12 475 6 460 8.16e-42 155
Msa0973890 MtrunA17_Chr5g0442561 25.692 506 310 16 7 480 2 473 8.51e-42 155
Msa0973890 MtrunA17_Chr6g0463891 26.824 507 298 15 11 479 13 484 1.30e-41 155
Msa0973890 MtrunA17_Chr8g0347271 26.854 499 296 15 9 482 18 472 1.73e-41 154
Msa0973890 MtrunA17_Chr8g0336691 30.423 378 217 10 121 475 1021 1375 2.12e-41 158
Msa0973890 MtrunA17_Chr8g0336691 26.810 511 301 15 2 482 5 472 9.83e-40 153
Msa0973890 MtrunA17_Chr8g0336691 29.730 370 212 10 121 482 582 911 1.61e-35 141
Msa0973890 MtrunA17_Chr8g0339461 31.781 365 199 11 121 458 109 450 2.26e-41 154
Msa0973890 MtrunA17_Chr7g0243851 26.285 506 279 15 2 479 3 442 2.54e-41 153
Msa0973890 MtrunA17_Chr1g0165701 27.403 489 314 11 11 479 16 483 4.05e-41 154
Msa0973890 MtrunA17_Chr5g0427561 81.818 88 16 0 396 483 1 88 4.62e-41 142
Msa0973890 MtrunA17_Chr7g0232331 31.111 360 203 14 121 458 108 444 6.67e-41 152
Msa0973890 MtrunA17_Chr8g0339451 31.492 362 204 10 121 458 101 442 6.77e-41 152
Msa0973890 MtrunA17_Chr4g0066201 27.435 503 276 16 15 479 23 474 7.32e-41 152
Msa0973890 MtrunA17_Chr2g0294921 27.655 499 294 18 15 479 165 630 9.43e-41 154
Msa0973890 MtrunA17_Chr1g0153451 28.231 503 285 19 10 482 6 462 1.39e-40 152
Msa0973890 MtrunA17_Chr7g0232411 28.982 383 221 11 121 478 108 464 1.90e-40 151
Msa0973890 MtrunA17_Chr8g0336651 30.649 385 219 10 121 482 883 1242 2.94e-40 155
Msa0973890 MtrunA17_Chr8g0336651 29.947 374 222 9 121 475 108 460 8.38e-39 150
Msa0973890 MtrunA17_Chr8g0336651 35.249 261 130 7 229 482 545 773 1.14e-34 138
Msa0973890 MtrunA17_Chr6g0459311 28.157 483 276 16 6 458 9 450 3.55e-40 150
Msa0973890 MtrunA17_Chr8g0355221 26.369 493 317 14 11 479 16 486 4.02e-40 151
Msa0973890 MtrunA17_Chr1g0159551 25.050 503 297 15 5 479 9 459 4.20e-40 150
Msa0973890 MtrunA17_Chr4g0044501 27.255 499 301 18 10 479 10 475 4.42e-40 150
Msa0973890 MtrunA17_Chr3g0106251 30.449 312 188 7 178 480 3 294 4.74e-40 146
Msa0973890 MtrunA17_Chr7g0235051 26.190 504 275 14 10 478 11 452 4.82e-40 150
Msa0973890 MtrunA17_Chr4g0066221 26.667 510 290 20 15 483 16 482 6.07e-40 150
Msa0973890 MtrunA17_Chr7g0265151 26.400 500 315 15 10 480 9 484 6.47e-40 150
Msa0973890 MtrunA17_Chr7g0275511 25.956 497 295 15 4 468 9 464 6.66e-40 150
Msa0973890 MtrunA17_Chr2g0294931 26.962 497 300 16 15 479 16 481 6.94e-40 150
Msa0973890 MtrunA17_Chr3g0079731 27.593 511 285 15 12 477 8 478 7.22e-40 150
Msa0973890 MtrunA17_Chr8g0336731 30.133 375 222 9 121 476 134 487 9.73e-40 150
Msa0973890 MtrunA17_Chr5g0416741 26.181 508 296 16 12 479 15 483 1.08e-39 149
Msa0973890 MtrunA17_Chr4g0066131 26.908 498 286 16 15 477 18 472 1.38e-39 149
Msa0973890 MtrunA17_Chr7g0243761 25.971 489 298 14 10 479 11 454 1.46e-39 149
Msa0973890 MtrunA17_Chr7g0232341 29.213 356 215 10 121 458 108 444 1.77e-39 149
Msa0973890 MtrunA17_Chr8g0334851 28.571 371 214 10 122 470 112 453 4.33e-39 147
Msa0973890 MtrunA17_Chr6g0486251 27.521 476 276 15 12 458 8 443 6.38e-39 147
Msa0973890 MtrunA17_Chr6g0486201 27.521 476 276 15 12 458 8 443 6.38e-39 147
Msa0973890 MtrunA17_Chr8g0361371 26.181 508 295 18 6 476 3 467 1.46e-38 146
Msa0973890 MtrunA17_Chr6g0463851 25.749 501 302 15 15 479 16 482 1.77e-38 146
Msa0973890 MtrunA17_Chr8g0374931 26.190 504 295 16 15 479 16 481 1.84e-38 146
Msa0973890 MtrunA17_Chr8g0339601 35.433 254 130 7 229 458 66 309 1.85e-38 142
Msa0973890 MtrunA17_Chr5g0442541 24.851 503 311 12 7 480 2 466 3.90e-38 145
Msa0973890 MtrunA17_Chr8g0339631 29.144 374 222 11 121 472 109 461 4.44e-38 145
Msa0973890 MtrunA17_Chr7g0218311 26.908 498 296 17 15 479 21 483 4.45e-38 145
Msa0973890 MtrunA17_Chr4g0042891 28.912 377 225 12 123 478 110 464 6.39e-38 144
Msa0973890 MtrunA17_Chr7g0249961 34.298 242 149 5 244 480 24 260 9.06e-38 139
Msa0973890 MtrunA17_Chr1g0173121 32.982 285 159 6 218 479 187 462 1.13e-37 143
Msa0973890 MtrunA17_Chr5g0448521 25.731 513 296 17 7 480 2 468 2.04e-37 143
Msa0973890 MtrunA17_Chr8g0335161 31.987 297 172 7 197 475 178 462 3.55e-37 142
Msa0973890 MtrunA17_Chr4g0066151 26.157 497 295 16 15 479 23 479 6.82e-37 142
Msa0973890 MtrunA17_Chr8g0382021 31.449 283 166 6 216 479 215 488 9.58e-37 141
Msa0973890 MtrunA17_Chr5g0420801 27.033 492 308 17 1 477 1 456 2.06e-36 140
Msa0973890 MtrunA17_Chr7g0243711 31.559 263 157 6 234 479 60 316 2.75e-36 137
Msa0973890 MtrunA17_Chr2g0329111 26.523 509 302 19 7 477 3 477 3.05e-36 140
Msa0973890 MtrunA17_Chr8g0339441 38.542 192 98 4 287 458 217 408 3.62e-36 139
Msa0973890 MtrunA17_Chr5g0442521 24.206 504 317 14 7 477 2 473 5.12e-36 139
Msa0973890 MtrunA17_Chr5g0416821 24.795 488 317 12 12 479 16 473 5.45e-36 139
Msa0973890 MtrunA17_Chr4g0066261 26.130 509 289 17 15 479 16 481 6.32e-36 139
Msa0973890 MtrunA17_Chr6g0463861 25.806 496 299 15 15 479 16 473 1.06e-35 138
Msa0973890 MtrunA17_Chr5g0442601 25.000 512 310 14 7 480 401 876 1.57e-35 140
Msa0973890 MtrunA17_Chr5g0442601 25.080 311 182 7 122 420 62 333 3.36e-22 100
Msa0973890 MtrunA17_Chr8g0374901 24.951 509 295 18 13 479 15 478 2.18e-35 137
Msa0973890 MtrunA17_Chr4g0066281 26.265 514 290 18 3 479 5 466 3.41e-35 137
Msa0973890 MtrunA17_Chr7g0265111 27.723 505 304 17 10 480 39 516 3.51e-35 137
Msa0973890 MtrunA17_Chr8g0369341 25.755 497 325 16 4 483 1 470 5.31e-35 136
Msa0973890 MtrunA17_Chr5g0410941 26.044 503 293 13 15 479 28 489 6.56e-35 136
Msa0973890 MtrunA17_Chr2g0294941 27.397 365 216 11 124 460 17 360 6.66e-35 134
Msa0973890 MtrunA17_Chr1g0153461 38.164 207 111 4 286 475 2 208 1.30e-34 129
Msa0973890 MtrunA17_Chr5g0431431 34.340 265 149 7 185 445 110 353 3.89e-34 131
Msa0973890 MtrunA17_Chr4g0066171 26.969 508 277 18 15 483 26 478 4.95e-34 134
Msa0973890 MtrunA17_Chr4g0044521 28.435 313 175 10 199 477 167 464 1.31e-33 132
Msa0973890 MtrunA17_Chr8g0334861 30.515 272 152 7 231 478 204 462 1.80e-33 132
Msa0973890 MtrunA17_Chr6g0466831 27.133 457 290 15 10 456 18 441 1.80e-33 132
Msa0973890 MtrunA17_Chr5g0442491 24.409 508 316 14 7 480 2 475 2.02e-33 132
Msa0973890 MtrunA17_Chr2g0302961 28.974 390 223 12 112 479 108 465 3.13e-33 131
Msa0973890 MtrunA17_Chr5g0403641 29.617 287 163 6 221 478 225 501 3.57e-33 132
Msa0973890 MtrunA17_Chr4g0042931 27.530 494 295 17 10 478 7 462 3.83e-33 131
Msa0973890 MtrunA17_Chr8g0370941 25.000 524 297 19 10 478 8 490 4.72e-33 131
Msa0973890 MtrunA17_Chr8g0374971 24.701 502 307 16 13 479 15 480 5.50e-33 130
Msa0973890 MtrunA17_Chr8g0350881 25.494 506 300 19 12 479 14 480 7.08e-33 130
Msa0973890 MtrunA17_Chr8g0334831 25.455 495 281 19 6 455 2 453 7.45e-33 130
Msa0973890 MtrunA17_Chr5g0429711 30.147 272 163 8 221 479 204 461 9.48e-33 129
Msa0973890 MtrunA17_Chr7g0243611 31.004 229 151 3 202 426 52 277 9.53e-33 126
Msa0973890 MtrunA17_Chr5g0442581 24.951 509 314 18 7 480 2 477 1.19e-32 130
Msa0973890 MtrunA17_Chr8g0374941 24.951 509 297 19 13 479 952 1417 1.31e-32 132
Msa0973890 MtrunA17_Chr8g0374941 24.385 488 288 17 13 460 14 460 3.38e-31 128
Msa0973890 MtrunA17_Chr8g0374941 24.286 490 294 17 13 464 479 929 2.21e-29 122
Msa0973890 MtrunA17_Chr2g0302991 28.191 376 228 9 122 479 111 462 2.76e-32 128
Msa0973890 MtrunA17_Chr6g0466841 26.258 457 294 15 10 456 18 441 6.28e-32 127
Msa0973890 MtrunA17_Chr8g0336321 26.407 462 293 17 10 453 7 439 1.34e-31 126
Msa0973890 MtrunA17_Chr7g0243911 35.979 189 104 3 283 454 17 205 1.52e-31 120
Msa0973890 MtrunA17_Chr2g0278721 27.368 475 300 17 1 457 508 955 1.24e-30 126
Msa0973890 MtrunA17_Chr2g0278721 34.682 173 104 4 290 456 274 443 1.82e-22 101
Msa0973890 MtrunA17_Chr8g0361411 24.694 490 309 17 8 479 6 453 1.28e-30 123
Msa0973890 MtrunA17_Chr5g0429681 25.813 492 311 16 6 477 40 497 1.61e-30 124
Msa0973890 MtrunA17_Chr8g0336251 26.190 462 294 17 10 453 7 439 1.98e-30 123
Msa0973890 MtrunA17_Chr2g0307961 24.286 490 323 14 9 481 12 470 1.33e-29 120
Msa0973890 MtrunA17_Chr7g0241781 38.728 173 95 4 288 456 241 406 1.07e-28 117
Msa0973890 MtrunA17_Chr5g0442511 23.228 508 295 18 7 479 46 493 3.25e-28 117
Msa0973890 MtrunA17_Chr4g0044481 27.103 428 242 14 10 422 27 399 3.42e-28 116
Msa0973890 MtrunA17_Chr7g0241801 38.150 173 96 4 288 456 241 406 3.55e-28 116
Msa0973890 MtrunA17_Chr4g0069611 25.652 460 293 15 10 456 15 438 6.44e-28 115
Msa0973890 MtrunA17_Chr3g0079711 37.500 168 83 5 314 460 3 169 6.49e-28 110
Msa0973890 MtrunA17_Chr3g0092031 35.593 177 105 4 286 456 2 175 1.08e-27 109
Msa0973890 MtrunA17_Chr1g0207881 40.310 129 71 1 357 479 256 384 1.18e-27 114
Msa0973890 MtrunA17_Chr6g0464091 25.000 480 295 20 2 456 9 448 4.34e-27 113
Msa0973890 MtrunA17_Chr7g0243811 24.703 421 261 12 22 426 1 381 6.73e-27 112
Msa0973890 MtrunA17_Chr5g0427571 31.489 235 148 6 229 453 42 273 1.05e-26 109
Msa0973890 MtrunA17_Chr7g0231631 29.365 252 170 5 233 479 11 259 3.39e-26 107
Msa0973890 MtrunA17_Chr6g0482061 28.664 307 186 9 191 478 186 478 2.44e-25 108
Msa0973890 MtrunA17_Chr8g0367221 26.407 462 295 17 10 455 798 1230 5.65e-25 109
Msa0973890 MtrunA17_Chr8g0367221 24.301 465 300 15 10 455 12 443 2.81e-24 107
Msa0973890 MtrunA17_Chr8g0367221 25.957 470 287 17 10 455 1288 1720 4.17e-23 103
Msa0973890 MtrunA17_Chr6g0454391 67.692 65 21 0 372 436 11 75 1.16e-24 99.0
Msa0973890 MtrunA17_Chr7g0232351 32.407 216 111 7 201 397 179 378 4.65e-24 103
Msa0973890 MtrunA17_Chr2g0278741 24.843 479 297 18 1 456 87 525 6.38e-24 105
Msa0973890 MtrunA17_Chr5g0409591 28.112 249 153 8 224 446 205 453 1.20e-23 103
Msa0973890 MtrunA17_Chr2g0302851 33.708 178 109 4 285 456 265 439 1.16e-22 100
Msa0973890 MtrunA17_Chr4g0039881 33.708 178 109 4 285 456 241 415 1.82e-22 99.8
Msa0973890 MtrunA17_Chr8g0337381 42.636 129 64 3 358 482 2 124 2.18e-22 92.8
Msa0973890 MtrunA17_Chr7g0250021 26.126 333 204 10 10 334 12 310 1.01e-21 95.9
Msa0973890 MtrunA17_Chr4g0066141 36.029 136 73 2 358 479 216 351 8.64e-20 90.9
Msa0973890 MtrunA17_Chr3g0118741 61.404 57 22 0 7 63 3 59 2.47e-19 82.0
Msa0973890 MtrunA17_Chr8g0357361 37.589 141 79 3 286 422 116 251 6.44e-19 86.7
Msa0973890 MtrunA17_Chr2g0283041 27.778 234 134 7 231 448 211 425 3.48e-18 87.0
Msa0973890 MtrunA17_Chr1g0196851 27.386 241 148 9 230 456 249 476 3.52e-18 87.0
Msa0973890 MtrunA17_Chr4g0040691 28.713 202 130 5 227 425 208 398 8.68e-18 85.9
Msa0973890 MtrunA17_Chr4g0029131 23.679 473 287 20 10 456 12 436 1.40e-17 85.9
Msa0973890 MtrunA17_Chr4g0029151 23.109 476 286 17 10 456 20 444 3.02e-17 84.0
Msa0973890 MtrunA17_Chr2g0319761 24.295 461 302 15 10 456 8 435 8.87e-17 82.8
Msa0973890 MtrunA17_Chr4g0040711 28.500 200 129 6 227 423 208 396 3.73e-16 80.9
Msa0973890 MtrunA17_Chr6g0454241 78.049 41 9 0 439 479 1 41 1.15e-15 72.0
Msa0973890 MtrunA17_Chr6g0454241 68.293 41 13 0 173 213 38 78 8.38e-12 61.2
Msa0973890 MtrunA17_Chr2g0319751 22.271 458 313 13 10 455 485 911 3.15e-14 75.5
Msa0973890 MtrunA17_Chr7g0243731 41.538 65 38 0 358 422 9 73 1.97e-13 65.9
Msa0973890 MtrunA17_Chr2g0319791 27.016 248 151 10 224 455 201 434 3.08e-13 71.6
Msa0973890 MtrunA17_Chr2g0319731 29.891 184 115 6 284 455 270 451 9.98e-13 70.1
Msa0973890 MtrunA17_Chr2g0319801 30.055 183 117 5 284 461 253 429 1.20e-12 69.7
Msa0973890 MtrunA17_Chr7g0267931 71.053 38 10 1 14 50 24 61 2.43e-12 62.0
Msa0973890 MtrunA17_Chr3g0118731 38.053 113 65 3 62 174 28 135 2.99e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0973890 AT1G22360.1 51.029 486 230 4 1 483 1 481 2.11e-178 509
Msa0973890 AT1G22340.1 51.143 481 226 5 7 483 10 485 2.13e-178 509
Msa0973890 AT1G22400.1 51.351 481 225 5 7 483 10 485 3.35e-178 509
Msa0973890 AT1G22380.1 49.896 481 233 4 6 483 9 484 1.30e-174 500
Msa0973890 AT1G22360.2 49.383 486 226 5 1 483 1 469 5.78e-169 484
Msa0973890 AT1G78270.1 49.375 480 233 6 5 480 8 481 8.49e-168 483
Msa0973890 AT1G22370.2 50.830 482 224 5 5 483 8 479 5.62e-166 478
Msa0973890 AT1G22370.1 51.485 303 144 2 184 483 7 309 1.12e-102 310
Msa0973890 AT5G59590.1 35.477 482 263 14 7 479 7 449 2.87e-90 283
Msa0973890 AT3G11340.1 34.304 481 266 13 8 480 7 445 2.48e-85 270
Msa0973890 AT5G05860.1 33.684 475 278 8 10 481 9 449 1.56e-84 268
Msa0973890 AT5G59580.1 34.362 486 270 14 8 484 7 452 1.63e-84 268
Msa0973890 AT3G46670.1 34.810 474 267 11 10 477 9 446 1.77e-84 268
Msa0973890 AT3G46660.1 35.307 473 264 13 12 477 16 453 2.58e-82 262
Msa0973890 AT5G05890.1 33.403 476 280 10 10 479 8 452 7.00e-81 258
Msa0973890 AT5G05880.1 32.489 474 283 10 10 479 8 448 1.24e-80 258
Msa0973890 AT5G05900.1 33.263 475 277 11 10 479 8 447 1.40e-80 258
Msa0973890 AT5G05870.1 32.842 475 286 8 10 479 8 454 3.78e-80 257
Msa0973890 AT3G46680.1 33.265 487 266 13 6 477 5 447 8.47e-79 253
Msa0973890 AT5G38010.1 34.504 484 277 13 1 477 1 451 1.19e-78 253
Msa0973890 AT2G36970.1 31.515 495 298 12 1 479 1 470 2.34e-78 253
Msa0973890 AT3G55700.1 34.728 478 267 16 12 480 10 451 1.40e-76 248
Msa0973890 AT3G46700.1 32.495 477 278 12 8 479 7 444 1.54e-74 242
Msa0973890 AT5G38040.1 32.120 467 271 12 19 477 19 447 9.35e-74 240
Msa0973890 AT3G46690.1 33.474 475 277 12 8 477 7 447 5.71e-73 238
Msa0973890 AT3G46650.1 32.842 475 260 14 5 474 7 427 5.75e-73 237
Msa0973890 AT3G46720.1 34.177 474 266 14 8 477 7 438 3.25e-72 236
Msa0973890 AT2G26480.1 30.390 487 285 13 7 482 5 448 1.72e-71 234
Msa0973890 AT3G55710.1 32.784 485 283 16 6 480 4 455 1.90e-68 226
Msa0973890 AT2G28080.1 30.818 477 296 11 15 482 23 474 1.60e-67 224
Msa0973890 AT3G21560.1 30.364 494 295 13 9 482 11 475 6.89e-67 223
Msa0973890 AT3G02100.1 30.498 482 300 13 2 477 5 457 1.81e-66 221
Msa0973890 AT4G15490.1 30.000 500 293 15 7 483 5 470 4.25e-65 218
Msa0973890 AT4G15480.1 29.857 489 295 13 10 479 19 478 3.26e-63 213
Msa0973890 AT4G15500.1 29.012 486 301 12 9 480 8 463 5.62e-63 212
Msa0973890 AT2G31790.1 31.006 487 281 13 7 476 5 453 7.32e-62 209
Msa0973890 AT2G30140.1 30.103 485 278 15 10 479 13 451 1.63e-60 205
Msa0973890 AT2G30140.2 30.103 485 277 16 10 479 13 450 3.14e-60 204
Msa0973890 AT2G23250.1 31.702 470 271 17 19 479 7 435 3.12e-58 199
Msa0973890 AT1G05680.1 30.000 480 287 12 10 478 6 447 4.83e-57 196
Msa0973890 AT2G30150.2 29.314 481 288 13 10 479 13 452 1.39e-56 195
Msa0973890 AT2G23260.1 29.184 490 303 13 1 481 1 455 6.38e-56 193
Msa0973890 AT2G43840.2 29.675 492 286 17 6 482 3 449 2.80e-55 191
Msa0973890 AT4G01070.1 31.098 492 283 12 7 475 5 463 3.14e-55 192
Msa0973890 AT2G30150.1 29.202 476 285 13 15 479 2 436 3.22e-55 191
Msa0973890 AT1G05675.1 28.033 478 301 11 10 477 6 450 4.69e-55 191
Msa0973890 AT2G31750.1 28.953 487 299 16 6 480 4 455 1.01e-54 190
Msa0973890 AT2G31750.2 28.953 487 299 16 6 480 4 455 1.37e-54 190
Msa0973890 AT2G43820.1 29.098 488 292 16 7 482 4 449 2.57e-54 189
Msa0973890 AT2G43840.1 29.472 492 287 17 6 482 3 449 3.30e-54 188
Msa0973890 AT2G36760.1 29.077 509 290 17 10 480 14 489 1.72e-52 185
Msa0973890 AT1G30530.1 27.403 489 308 13 1 480 1 451 2.99e-52 183
Msa0973890 AT2G36800.1 30.350 514 297 20 1 480 2 488 3.65e-52 184
Msa0973890 AT4G34131.1 28.324 519 290 17 1 478 1 478 5.75e-52 183
Msa0973890 AT2G36770.1 28.261 506 298 19 10 480 14 489 1.69e-51 182
Msa0973890 AT5G17050.1 28.601 479 305 12 7 477 9 458 3.82e-50 177
Msa0973890 AT2G36790.1 30.952 504 287 17 10 480 13 488 2.42e-49 176
Msa0973890 AT4G15550.1 27.866 506 284 13 9 478 12 472 3.32e-49 176
Msa0973890 AT5G17040.1 26.582 474 307 9 10 480 5 440 7.74e-49 174
Msa0973890 AT3G53160.1 29.175 497 305 17 10 480 8 483 1.32e-48 174
Msa0973890 AT5G66690.1 27.811 507 285 16 8 478 5 466 1.61e-48 174
Msa0973890 AT2G36780.1 28.684 509 292 18 10 480 14 489 1.81e-48 174
Msa0973890 AT1G24100.1 29.447 506 269 18 6 480 7 455 2.93e-48 172
Msa0973890 AT2G15480.1 26.946 501 323 13 1 479 1 480 3.12e-48 173
Msa0973890 AT2G36750.1 29.032 496 306 18 10 480 10 484 1.46e-47 171
Msa0973890 AT5G17040.2 30.897 301 196 4 181 480 49 338 3.22e-47 167
Msa0973890 AT1G10400.1 30.285 492 287 18 8 478 5 461 3.31e-47 170
Msa0973890 AT4G34138.1 27.992 518 283 17 8 481 9 480 6.72e-47 169
Msa0973890 AT1G05560.1 26.518 494 294 11 9 479 4 451 7.87e-47 169
Msa0973890 AT2G15480.2 26.614 511 322 14 1 479 1 490 1.34e-46 169
Msa0973890 AT1G05560.2 26.518 494 294 11 9 479 54 501 2.84e-46 169
Msa0973890 AT2G15490.3 27.811 507 301 16 6 479 3 477 3.75e-46 167
Msa0973890 AT5G17030.1 25.887 479 319 10 7 480 9 456 5.30e-46 166
Msa0973890 AT2G15490.1 27.647 510 301 16 6 479 3 480 8.75e-46 166
Msa0973890 AT3G50740.1 26.575 508 296 13 8 478 5 472 4.24e-45 165
Msa0973890 AT3G16520.3 29.891 368 223 10 122 477 113 457 4.63e-45 164
Msa0973890 AT4G34135.1 28.600 500 312 14 2 478 3 480 5.36e-45 164
Msa0973890 AT3G16520.1 30.571 350 208 10 122 459 113 439 1.17e-44 162
Msa0973890 AT3G16520.2 30.571 350 208 10 122 459 113 439 1.41e-44 162
Msa0973890 AT1G01420.2 29.435 496 291 13 9 482 10 468 2.50e-44 162
Msa0973890 AT1G01420.1 29.435 496 291 13 9 482 7 465 2.71e-44 162
Msa0973890 AT3G22250.1 26.514 479 301 11 7 464 5 453 6.04e-44 161
Msa0973890 AT5G26310.1 26.275 510 289 16 8 478 5 466 1.50e-43 160
Msa0973890 AT1G05530.1 25.963 493 305 14 8 480 3 455 3.66e-43 159
Msa0973890 AT4G14090.1 27.291 491 300 17 3 478 6 454 4.08e-43 159
Msa0973890 AT5G14860.1 29.563 504 285 18 10 479 8 475 4.26e-43 159
Msa0973890 AT5G37950.1 30.649 385 213 13 25 397 1 343 1.76e-41 152
Msa0973890 AT2G16890.2 28.169 497 292 17 10 479 9 467 4.40e-41 154
Msa0973890 AT5G37950.2 30.208 384 210 12 25 397 1 337 4.99e-40 147
Msa0973890 AT3G53150.1 26.916 509 320 14 7 480 19 510 1.28e-39 150
Msa0973890 AT1G01390.1 29.341 501 286 16 9 482 7 466 1.59e-38 146
Msa0973890 AT1G01390.2 29.341 501 286 16 9 482 24 483 2.43e-38 146
Msa0973890 AT5G03490.1 27.495 491 294 20 6 478 15 461 3.72e-38 145
Msa0973890 AT1G73880.1 27.912 498 302 17 3 480 7 467 5.28e-38 145
Msa0973890 AT4G36770.1 27.178 482 279 15 10 460 4 444 6.60e-38 144
Msa0973890 AT3G21800.1 25.749 501 307 13 12 479 7 475 1.68e-37 144
Msa0973890 AT3G21780.1 26.839 503 301 15 8 479 2 468 2.21e-37 143
Msa0973890 AT2G29710.1 25.202 496 315 15 7 480 2 463 3.87e-37 142
Msa0973890 AT3G21760.1 26.640 503 306 14 12 479 6 480 6.62e-37 142
Msa0973890 AT2G29740.1 25.911 494 319 13 6 477 4 472 3.27e-36 140
Msa0973890 AT2G18560.1 32.646 291 151 10 210 472 96 369 3.93e-36 138
Msa0973890 AT4G15260.1 27.733 375 216 11 135 480 7 355 4.02e-36 137
Msa0973890 AT4G15280.1 27.047 403 239 11 109 480 96 474 5.40e-36 139
Msa0973890 AT1G07260.1 27.957 372 236 8 122 480 120 472 5.79e-36 139
Msa0973890 AT3G21790.1 28.424 387 230 8 120 479 112 478 8.01e-36 139
Msa0973890 AT4G15280.2 27.047 403 239 11 109 480 128 506 8.26e-36 139
Msa0973890 AT2G29730.1 27.200 375 230 11 122 480 116 463 1.10e-35 138
Msa0973890 AT1G51210.1 27.430 463 272 19 8 454 18 432 6.85e-34 132
Msa0973890 AT3G21750.1 26.357 387 230 9 125 480 107 469 1.37e-33 132
Msa0973890 AT1G07250.1 27.147 361 224 8 136 480 136 473 1.68e-32 129
Msa0973890 AT2G18570.1 23.762 505 297 17 8 472 3 459 5.55e-32 128
Msa0973890 AT2G29750.1 24.644 491 322 13 12 480 10 474 7.83e-32 127
Msa0973890 AT2G16890.3 27.191 445 266 16 10 431 9 418 1.54e-31 126
Msa0973890 AT5G65550.1 25.726 482 296 13 6 464 5 447 5.82e-31 125
Msa0973890 AT5G49690.1 24.359 468 307 14 10 464 10 443 5.42e-30 122
Msa0973890 AT5G12890.1 26.104 521 311 21 1 483 1 485 1.62e-29 121
Msa0973890 AT1G07240.1 24.533 375 248 8 122 480 121 476 5.15e-29 119
Msa0973890 AT2G22590.1 27.254 477 294 15 1 455 1 446 1.41e-26 112
Msa0973890 AT1G06000.1 28.369 282 174 9 218 481 164 435 3.85e-23 102
Msa0973890 AT4G01070.2 28.242 347 210 9 7 347 5 318 1.01e-22 99.8
Msa0973890 AT4G34135.2 27.826 345 216 11 2 334 3 326 3.36e-22 97.8
Msa0973890 AT4G27570.1 23.776 429 272 14 10 430 7 388 4.15e-19 90.1
Msa0973890 AT1G64910.1 24.230 487 301 18 10 479 6 441 2.08e-18 87.8
Msa0973890 AT5G53990.1 24.658 438 252 15 10 430 6 382 1.07e-17 85.9
Msa0973890 AT4G27560.1 22.970 431 277 14 8 430 5 388 3.33e-17 84.3
Msa0973890 AT5G54010.1 24.379 443 279 17 8 441 4 399 5.83e-17 83.6
Msa0973890 AT4G09500.2 23.504 468 282 17 10 456 6 418 9.33e-17 82.8
Msa0973890 AT2G22930.1 24.400 500 288 20 10 484 6 440 9.61e-16 79.7
Msa0973890 AT4G09500.1 28.351 194 122 6 278 456 202 393 1.07e-15 79.3
Msa0973890 AT3G29630.2 28.358 201 127 5 290 479 220 414 5.43e-15 77.4
Msa0973890 AT3G29630.1 28.358 201 127 5 290 479 246 440 5.82e-15 77.4
Msa0973890 AT2G23210.1 24.342 304 190 9 1 299 1 269 2.24e-14 73.9
Msa0973890 AT5G54060.1 29.787 235 137 9 231 450 219 440 2.99e-13 72.0
Msa0973890 AT1G50580.1 30.345 145 91 4 290 430 245 383 2.29e-12 69.3
Msa0973890 AT1G64920.1 25.352 213 135 6 290 484 244 450 2.99e-12 68.9

Find 90 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATCCCAATCTTCCATTCT+TGG 0.164386 6_4:+6699282 None:intergenic
AGGATCTTCCTACTTTAATT+AGG 0.231984 6_4:-6699922 Msa0973890:CDS
AGACCATTCTGAAACAATTT+AGG 0.239210 6_4:+6700424 None:intergenic
TCAGCAACTTCTACTGTAAA+TGG 0.239778 6_4:+6700517 None:intergenic
TTATGAAACAAATGGATATT+TGG 0.243463 6_4:-6699990 Msa0973890:CDS
CAACTTTAGATTGTAATCTT+TGG 0.245330 6_4:-6699700 Msa0973890:CDS
ATGTAGTGCTTGTTTCTTCT+TGG 0.269212 6_4:-6700461 Msa0973890:CDS
TTGAAACCATCAAAGGCTTT+TGG 0.275289 6_4:+6700742 None:intergenic
TCTGTTGTTTATGTAAATTT+TGG 0.280760 6_4:-6699629 Msa0973890:CDS
GCAAAACTTCTTCACCTTAG+AGG 0.292624 6_4:-6700826 Msa0973890:CDS
GTTTCAACAATGCATTGATA+TGG 0.308101 6_4:+6700851 None:intergenic
TATGGTTAGTAGTTATATAT+TGG 0.333158 6_4:-6700997 None:intergenic
CATGGCGAAAATAGAACAAT+TGG 0.344321 6_4:+6700481 None:intergenic
TCAGAAACAAAGCAAGTTAC+TGG 0.351048 6_4:+6700550 None:intergenic
TGGCAAATAATTCTACTGTT+AGG 0.360863 6_4:+6699302 None:intergenic
ATATGGCCTTGAACTGGATA+TGG 0.362063 6_4:+6700868 None:intergenic
CAACAATGATATGCAGAAAC+TGG 0.365037 6_4:-6698900 Msa0973890:three_prime_UTR
GCGGACACCAACTTGCTATT+AGG 0.366553 6_4:+6699450 None:intergenic
ATTTGCCAAGAATGGAAGAT+TGG 0.375696 6_4:-6699287 Msa0973890:CDS
AAGGGTCCAAAAGCCTTTGA+TGG 0.381595 6_4:-6700748 Msa0973890:CDS
GTAGAATTATTTGCCAAGAA+TGG 0.382761 6_4:-6699295 Msa0973890:CDS
ATTAGGCCTGATCTTGTCAT+TGG 0.388944 6_4:-6699524 Msa0973890:CDS
AGGTTATGTGAAAGCCTCTA+AGG 0.390826 6_4:+6700812 None:intergenic
ATTTGGACACTATAGTTGAT+TGG 0.397502 6_4:-6699973 Msa0973890:CDS
TTTCCTTCTCTATACACAAT+TGG 0.399449 6_4:-6699767 Msa0973890:CDS
GAAATTGTTAGAGTTTGCTT+GGG 0.411975 6_4:-6699582 Msa0973890:CDS
AATTCTATCATCAAGTCATT+AGG 0.416224 6_4:+6699890 None:intergenic
AGAAATTGTTAGAGTTTGCT+TGG 0.416951 6_4:-6699583 Msa0973890:CDS
GCAGAGGAGGACACAAGATT+TGG 0.418094 6_4:-6699149 Msa0973890:CDS
TGCCTTCTTCTTCAACTCCA+TGG 0.419869 6_4:+6699169 None:intergenic
AGTGCTTGTTTCTTCTTGGC+TGG 0.441801 6_4:-6700457 Msa0973890:CDS
TTTGCCAAGAATGGAAGATT+GGG 0.444354 6_4:-6699286 Msa0973890:CDS
TGATCTTGTCATTGGTGGCT+CGG 0.445782 6_4:-6699516 Msa0973890:CDS
GTCAAGAATCCGCCGATTGA+AGG 0.451247 6_4:+6699407 None:intergenic
AGGAAAGAAGATGAGACAAA+AGG 0.459456 6_4:-6699192 Msa0973890:CDS
AGGCCTGATCTTGTCATTGG+TGG 0.464524 6_4:-6699521 Msa0973890:CDS
ATTCCTAAATTGTTTCAGAA+TGG 0.469533 6_4:-6700427 Msa0973890:CDS
TCCATCGGTGTTAAACCATC+TGG 0.471701 6_4:+6700697 None:intergenic
GAAACTGATCAATGAATTGA+TGG 0.474631 6_4:-6699225 Msa0973890:CDS
GAATTGATGGTGGGAGAGAA+AGG 0.475632 6_4:-6699212 Msa0973890:CDS
GCATTGATATGGCCTTGAAC+TGG 0.479128 6_4:+6700862 None:intergenic
TACCTCTTCTCTCTTTACAT+TGG 0.485576 6_4:+6699250 None:intergenic
GATGAGAGTTATGAAACAAA+TGG 0.487420 6_4:-6699998 Msa0973890:CDS
AAGATACTAAATGTCTTGAA+TGG 0.490321 6_4:-6699673 Msa0973890:CDS
CAAACGTTTGCTCAAATCAA+AGG 0.494520 6_4:-6700767 Msa0973890:CDS
TTAACTCCATATCCAGTTCA+AGG 0.502163 6_4:-6700874 Msa0973890:CDS
GAGCCACCAATGACAAGATC+AGG 0.503138 6_4:+6699518 None:intergenic
ATAGAATTTATGACTGAAGT+GGG 0.517633 6_4:-6699875 Msa0973890:CDS
ATGGCGAAAATAGAACAATT+GGG 0.520117 6_4:+6700482 None:intergenic
ACCATCTGGTATGGTCTCAA+AGG 0.528576 6_4:+6700711 None:intergenic
CTTCATGAATCTGCTACTGC+TGG 0.533056 6_4:-6700583 Msa0973890:CDS
GTGTTGAACCATCCTTCAAT+CGG 0.534737 6_4:-6699419 Msa0973890:CDS
CGGTGTTAAACCATCTGGTA+TGG 0.538431 6_4:+6700702 None:intergenic
GAGGAGGACACAAGATTTGG+TGG 0.543426 6_4:-6699146 Msa0973890:CDS
AAACGTTTGCTCAAATCAAA+GGG 0.550312 6_4:-6700766 Msa0973890:CDS
TGGTTCAACACTTTCTCTTG+CGG 0.554655 6_4:+6699431 None:intergenic
TGGTTGTTCATACATGAACT+TGG 0.558369 6_4:-6699126 Msa0973890:CDS
GGCCATGGAGTTGAAGAAGA+AGG 0.559979 6_4:-6699171 Msa0973890:CDS
GATTCTTGACTCATTGCGGA+TGG 0.560350 6_4:-6699394 Msa0973890:CDS
ACCAGATGGTTTAACACCGA+TGG 0.563049 6_4:-6700698 Msa0973890:CDS
TCCGGCACATACACTTTCAG+TGG 0.566331 6_4:+6699364 None:intergenic
GAAGATGAGACAAAAGGCCA+TGG 0.572398 6_4:-6699186 Msa0973890:CDS
CCTACACAACATTGGCACTC+CGG 0.573371 6_4:+6699346 None:intergenic
AAGAAGAAACAAGCACTACA+TGG 0.574532 6_4:+6700463 None:intergenic
GGACCAATTGTGTATAGAGA+AGG 0.575794 6_4:+6699764 None:intergenic
GTTGAAGAAGAAGGCAGAGG+AGG 0.576237 6_4:-6699162 Msa0973890:CDS
GGAGTTGAAGAAGAAGGCAG+AGG 0.577969 6_4:-6699165 Msa0973890:CDS
CCAAGAATGGAAGATTGGGA+TGG 0.581034 6_4:-6699282 Msa0973890:CDS
ACCACTGAAAGTGTATGTGC+CGG 0.582994 6_4:-6699365 Msa0973890:CDS
AAAATCATTGAAACCATCAA+AGG 0.587289 6_4:+6700735 None:intergenic
GATAGAATTTATGACTGAAG+TGG 0.596409 6_4:-6699876 Msa0973890:CDS
CCGGAGTGCCAATGTTGTGT+AGG 0.599133 6_4:-6699346 Msa0973890:CDS
ACCTTTGAGACCATACCAGA+TGG 0.602303 6_4:-6700712 Msa0973890:CDS
AGAATCCGCCGATTGAAGGA+TGG 0.612726 6_4:+6699411 None:intergenic
TTGAACCATCCTTCAATCGG+CGG 0.615363 6_4:-6699416 Msa0973890:CDS
CTGATCAATGAATTGATGGT+GGG 0.620367 6_4:-6699221 Msa0973890:CDS
GGCGGATTCTTGACTCATTG+CGG 0.620610 6_4:-6699398 Msa0973890:CDS
TAAATGATATTACCTTTGAG+TGG 0.622417 6_4:+6700397 None:intergenic
TACCAATGTAAAGAGAGAAG+AGG 0.629268 6_4:-6699252 Msa0973890:CDS
AAATTGTTAGAGTTTGCTTG+GGG 0.637062 6_4:-6699581 Msa0973890:CDS
AATGGTCTACTACCACTCAA+AGG 0.639842 6_4:-6700409 Msa0973890:intron
ACTGATCAATGAATTGATGG+TGG 0.640089 6_4:-6699222 Msa0973890:CDS
ATAGAGGCCTAATAGCAAGT+TGG 0.644231 6_4:-6699457 Msa0973890:CDS
GATGGTTTAACACCGATGGA+AGG 0.648269 6_4:-6700694 Msa0973890:CDS
ACATCACCATCACCTTCCAT+CGG 0.649341 6_4:+6700682 None:intergenic
ATTGTATTCAGTGTTGACAA+AGG 0.675767 6_4:+6700792 None:intergenic
GAAACAAAGCAAGTTACTGG+AGG 0.675827 6_4:+6700553 None:intergenic
TATGGAGTTAACACTGCATG+TGG 0.701369 6_4:+6700886 None:intergenic
TTAACACCGATGGAAGGTGA+TGG 0.721857 6_4:-6700688 Msa0973890:CDS
CTTGGACAAAGTGATCAATG+AGG 0.725106 6_4:-6699108 Msa0973890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGAAACAAATGGATATT+TGG - chr6_4:6699873-6699892 Msa0973890:CDS 20.0%
!!! AATCTAAAGTTTTTCAAAAC+TGG + chr6_4:6699919-6699938 None:intergenic 20.0%
!! TTTGAAAAACTTTAGATTGA+AGG - chr6_4:6699921-6699940 Msa0973890:CDS 20.0%
!!! TCTGTTGTTTATGTAAATTT+TGG - chr6_4:6700234-6700253 Msa0973890:intron 20.0%
!! TTATGAAACAAATGGATATT+TGG - chr6_4:6699873-6699892 Msa0973890:CDS 20.0%
!!! AATCTAAAGTTTTTCAAAAC+TGG + chr6_4:6699919-6699938 None:intergenic 20.0%
!! TTTGAAAAACTTTAGATTGA+AGG - chr6_4:6699921-6699940 Msa0973890:CDS 20.0%
!!! TCTGTTGTTTATGTAAATTT+TGG - chr6_4:6700234-6700253 Msa0973890:intron 20.0%
! AAAATCATTGAAACCATCAA+AGG + chr6_4:6699131-6699150 None:intergenic 25.0%
!!! AAGAACTTTTGTCACTTTTT+TGG - chr6_4:6699241-6699260 Msa0973890:CDS 25.0%
! ATTCCTAAATTGTTTCAGAA+TGG - chr6_4:6699436-6699455 Msa0973890:CDS 25.0%
! TAAATGATATTACCTTTGAG+TGG + chr6_4:6699469-6699488 None:intergenic 25.0%
! CAAATGCGATTATAAATGTT+CGG + chr6_4:6699584-6699603 None:intergenic 25.0%
! ATTCTCTTCAGTGTTAATTT+GGG - chr6_4:6699765-6699784 Msa0973890:CDS 25.0%
!! GAATGTGATTTTATACTTCA+AGG - chr6_4:6699815-6699834 Msa0973890:CDS 25.0%
!! TCTTTTGTCCTAATTAAAGT+AGG + chr6_4:6699952-6699971 None:intergenic 25.0%
! AATTCTATCATCAAGTCATT+AGG + chr6_4:6699976-6699995 None:intergenic 25.0%
! ATAGAATTTATGACTGAAGT+GGG - chr6_4:6699988-6700007 Msa0973890:CDS 25.0%
! CAACTTTAGATTGTAATCTT+TGG - chr6_4:6700163-6700182 Msa0973890:intron 25.0%
! AAGATACTAAATGTCTTGAA+TGG - chr6_4:6700190-6700209 Msa0973890:intron 25.0%
!!! AACCTTTTTTGTGGATTATT+AGG - chr6_4:6700322-6700341 Msa0973890:intron 25.0%
!! GTGAATGAAATTTTAGATAG+AGG - chr6_4:6700390-6700409 Msa0973890:intron 25.0%
! AAAATCATTGAAACCATCAA+AGG + chr6_4:6699131-6699150 None:intergenic 25.0%
!!! AAGAACTTTTGTCACTTTTT+TGG - chr6_4:6699241-6699260 Msa0973890:CDS 25.0%
! ATTCCTAAATTGTTTCAGAA+TGG - chr6_4:6699436-6699455 Msa0973890:CDS 25.0%
! TAAATGATATTACCTTTGAG+TGG + chr6_4:6699469-6699488 None:intergenic 25.0%
! CAAATGCGATTATAAATGTT+CGG + chr6_4:6699584-6699603 None:intergenic 25.0%
! ATTCTCTTCAGTGTTAATTT+GGG - chr6_4:6699765-6699784 Msa0973890:CDS 25.0%
!! GAATGTGATTTTATACTTCA+AGG - chr6_4:6699815-6699834 Msa0973890:CDS 25.0%
!! TCTTTTGTCCTAATTAAAGT+AGG + chr6_4:6699952-6699971 None:intergenic 25.0%
! AATTCTATCATCAAGTCATT+AGG + chr6_4:6699976-6699995 None:intergenic 25.0%
! ATAGAATTTATGACTGAAGT+GGG - chr6_4:6699988-6700007 Msa0973890:CDS 25.0%
! CAACTTTAGATTGTAATCTT+TGG - chr6_4:6700163-6700182 Msa0973890:intron 25.0%
! AAGATACTAAATGTCTTGAA+TGG - chr6_4:6700190-6700209 Msa0973890:intron 25.0%
!!! AACCTTTTTTGTGGATTATT+AGG - chr6_4:6700322-6700341 Msa0973890:intron 25.0%
!! GTGAATGAAATTTTAGATAG+AGG - chr6_4:6700390-6700409 Msa0973890:intron 25.0%
! GTTTCAACAATGCATTGATA+TGG + chr6_4:6699015-6699034 None:intergenic 30.0%
!! ATTGTATTCAGTGTTGACAA+AGG + chr6_4:6699074-6699093 None:intergenic 30.0%
AAACGTTTGCTCAAATCAAA+GGG - chr6_4:6699097-6699116 Msa0973890:CDS 30.0%
ATGGCGAAAATAGAACAATT+GGG + chr6_4:6699384-6699403 None:intergenic 30.0%
!! AGACCATTCTGAAACAATTT+AGG + chr6_4:6699442-6699461 None:intergenic 30.0%
ACATCTCTTTGGTAGAAAAA+GGG + chr6_4:6699496-6699515 None:intergenic 30.0%
GATTCTCTTCAGTGTTAATT+TGG - chr6_4:6699764-6699783 Msa0973890:CDS 30.0%
GATGAGAGTTATGAAACAAA+TGG - chr6_4:6699865-6699884 Msa0973890:CDS 30.0%
ATTTGGACACTATAGTTGAT+TGG - chr6_4:6699890-6699909 Msa0973890:CDS 30.0%
AGGATCTTCCTACTTTAATT+AGG - chr6_4:6699941-6699960 Msa0973890:CDS 30.0%
GATAGAATTTATGACTGAAG+TGG - chr6_4:6699987-6700006 Msa0973890:CDS 30.0%
TTTCCTTCTCTATACACAAT+TGG - chr6_4:6700096-6700115 Msa0973890:intron 30.0%
TGACTTAAAAACGAAGCAAA+CGG + chr6_4:6700123-6700142 None:intergenic 30.0%
! AAAGTTGTCAAGTGATTTTG+CGG + chr6_4:6700150-6700169 None:intergenic 30.0%
! AGAAATTGTTAGAGTTTGCT+TGG - chr6_4:6700280-6700299 Msa0973890:intron 30.0%
! GAAATTGTTAGAGTTTGCTT+GGG - chr6_4:6700281-6700300 Msa0973890:intron 30.0%
! AAATTGTTAGAGTTTGCTTG+GGG - chr6_4:6700282-6700301 Msa0973890:intron 30.0%
TGGCAAATAATTCTACTGTT+AGG + chr6_4:6700564-6700583 None:intergenic 30.0%
GTAGAATTATTTGCCAAGAA+TGG - chr6_4:6700568-6700587 Msa0973890:CDS 30.0%
GAAACTGATCAATGAATTGA+TGG - chr6_4:6700638-6700657 Msa0973890:CDS 30.0%
! GTTTCAACAATGCATTGATA+TGG + chr6_4:6699015-6699034 None:intergenic 30.0%
!! ATTGTATTCAGTGTTGACAA+AGG + chr6_4:6699074-6699093 None:intergenic 30.0%
AAACGTTTGCTCAAATCAAA+GGG - chr6_4:6699097-6699116 Msa0973890:CDS 30.0%
ATGGCGAAAATAGAACAATT+GGG + chr6_4:6699384-6699403 None:intergenic 30.0%
!! AGACCATTCTGAAACAATTT+AGG + chr6_4:6699442-6699461 None:intergenic 30.0%
ACATCTCTTTGGTAGAAAAA+GGG + chr6_4:6699496-6699515 None:intergenic 30.0%
GATTCTCTTCAGTGTTAATT+TGG - chr6_4:6699764-6699783 Msa0973890:CDS 30.0%
GATGAGAGTTATGAAACAAA+TGG - chr6_4:6699865-6699884 Msa0973890:CDS 30.0%
ATTTGGACACTATAGTTGAT+TGG - chr6_4:6699890-6699909 Msa0973890:CDS 30.0%
AGGATCTTCCTACTTTAATT+AGG - chr6_4:6699941-6699960 Msa0973890:CDS 30.0%
GATAGAATTTATGACTGAAG+TGG - chr6_4:6699987-6700006 Msa0973890:CDS 30.0%
TTTCCTTCTCTATACACAAT+TGG - chr6_4:6700096-6700115 Msa0973890:intron 30.0%
TGACTTAAAAACGAAGCAAA+CGG + chr6_4:6700123-6700142 None:intergenic 30.0%
! AAAGTTGTCAAGTGATTTTG+CGG + chr6_4:6700150-6700169 None:intergenic 30.0%
! AGAAATTGTTAGAGTTTGCT+TGG - chr6_4:6700280-6700299 Msa0973890:intron 30.0%
! GAAATTGTTAGAGTTTGCTT+GGG - chr6_4:6700281-6700300 Msa0973890:intron 30.0%
! AAATTGTTAGAGTTTGCTTG+GGG - chr6_4:6700282-6700301 Msa0973890:intron 30.0%
TGGCAAATAATTCTACTGTT+AGG + chr6_4:6700564-6700583 None:intergenic 30.0%
GTAGAATTATTTGCCAAGAA+TGG - chr6_4:6700568-6700587 Msa0973890:CDS 30.0%
GAAACTGATCAATGAATTGA+TGG - chr6_4:6700638-6700657 Msa0973890:CDS 30.0%
TTAACTCCATATCCAGTTCA+AGG - chr6_4:6698989-6699008 Msa0973890:three_prime_UTR 35.0%
CAAACGTTTGCTCAAATCAA+AGG - chr6_4:6699096-6699115 Msa0973890:CDS 35.0%
! TTGAAACCATCAAAGGCTTT+TGG + chr6_4:6699124-6699143 None:intergenic 35.0%
TCAGAAACAAAGCAAGTTAC+TGG + chr6_4:6699316-6699335 None:intergenic 35.0%
TCAGCAACTTCTACTGTAAA+TGG + chr6_4:6699349-6699368 None:intergenic 35.0%
CATGGCGAAAATAGAACAAT+TGG + chr6_4:6699385-6699404 None:intergenic 35.0%
AAGAAGAAACAAGCACTACA+TGG + chr6_4:6699403-6699422 None:intergenic 35.0%
! ATGTAGTGCTTGTTTCTTCT+TGG - chr6_4:6699402-6699421 Msa0973890:CDS 35.0%
CATCTCTTTGGTAGAAAAAG+GGG + chr6_4:6699495-6699514 None:intergenic 35.0%
CACATCTCTTTGGTAGAAAA+AGG + chr6_4:6699497-6699516 None:intergenic 35.0%
CATACATACACACATCTCTT+TGG + chr6_4:6699507-6699526 None:intergenic 35.0%
GAAGTTGCATCAACTTCATT+TGG - chr6_4:6699603-6699622 Msa0973890:CDS 35.0%
! TCTTCAGTGTTAATTTGGGT+GGG - chr6_4:6699769-6699788 Msa0973890:CDS 35.0%
! CAAAAAAGGTTTCTTGCTGT+TGG + chr6_4:6700313-6700332 None:intergenic 35.0%
!!! ACAGCAAGAAACCTTTTTTG+TGG - chr6_4:6700313-6700332 Msa0973890:intron 35.0%
GGCCTAATAATCCACAAAAA+AGG + chr6_4:6700327-6700346 None:intergenic 35.0%
AAAAATGGCCTACACAACAT+TGG + chr6_4:6700528-6700547 None:intergenic 35.0%
GGTAGTTGATCAGCAAAAAA+TGG + chr6_4:6700543-6700562 None:intergenic 35.0%
ATTTGCCAAGAATGGAAGAT+TGG - chr6_4:6700576-6700595 Msa0973890:CDS 35.0%
TTTGCCAAGAATGGAAGATT+GGG - chr6_4:6700577-6700596 Msa0973890:CDS 35.0%
TACCAATGTAAAGAGAGAAG+AGG - chr6_4:6700611-6700630 Msa0973890:CDS 35.0%
TACCTCTTCTCTCTTTACAT+TGG + chr6_4:6700616-6700635 None:intergenic 35.0%
ACTGATCAATGAATTGATGG+TGG - chr6_4:6700641-6700660 Msa0973890:CDS 35.0%
! CTGATCAATGAATTGATGGT+GGG - chr6_4:6700642-6700661 Msa0973890:CDS 35.0%
AGGAAAGAAGATGAGACAAA+AGG - chr6_4:6700671-6700690 Msa0973890:CDS 35.0%
TGGTTGTTCATACATGAACT+TGG - chr6_4:6700737-6700756 Msa0973890:CDS 35.0%
CAACAATGATATGCAGAAAC+TGG - chr6_4:6700963-6700982 Msa0973890:five_prime_UTR 35.0%
TTAACTCCATATCCAGTTCA+AGG - chr6_4:6698989-6699008 Msa0973890:three_prime_UTR 35.0%
CAAACGTTTGCTCAAATCAA+AGG - chr6_4:6699096-6699115 Msa0973890:CDS 35.0%
! TTGAAACCATCAAAGGCTTT+TGG + chr6_4:6699124-6699143 None:intergenic 35.0%
TCAGAAACAAAGCAAGTTAC+TGG + chr6_4:6699316-6699335 None:intergenic 35.0%
TCAGCAACTTCTACTGTAAA+TGG + chr6_4:6699349-6699368 None:intergenic 35.0%
CATGGCGAAAATAGAACAAT+TGG + chr6_4:6699385-6699404 None:intergenic 35.0%
AAGAAGAAACAAGCACTACA+TGG + chr6_4:6699403-6699422 None:intergenic 35.0%
! ATGTAGTGCTTGTTTCTTCT+TGG - chr6_4:6699402-6699421 Msa0973890:CDS 35.0%
CATCTCTTTGGTAGAAAAAG+GGG + chr6_4:6699495-6699514 None:intergenic 35.0%
CACATCTCTTTGGTAGAAAA+AGG + chr6_4:6699497-6699516 None:intergenic 35.0%
CATACATACACACATCTCTT+TGG + chr6_4:6699507-6699526 None:intergenic 35.0%
GAAGTTGCATCAACTTCATT+TGG - chr6_4:6699603-6699622 Msa0973890:CDS 35.0%
! TCTTCAGTGTTAATTTGGGT+GGG - chr6_4:6699769-6699788 Msa0973890:CDS 35.0%
! CAAAAAAGGTTTCTTGCTGT+TGG + chr6_4:6700313-6700332 None:intergenic 35.0%
!!! ACAGCAAGAAACCTTTTTTG+TGG - chr6_4:6700313-6700332 Msa0973890:intron 35.0%
GGCCTAATAATCCACAAAAA+AGG + chr6_4:6700327-6700346 None:intergenic 35.0%
AAAAATGGCCTACACAACAT+TGG + chr6_4:6700528-6700547 None:intergenic 35.0%
GGTAGTTGATCAGCAAAAAA+TGG + chr6_4:6700543-6700562 None:intergenic 35.0%
ATTTGCCAAGAATGGAAGAT+TGG - chr6_4:6700576-6700595 Msa0973890:CDS 35.0%
TTTGCCAAGAATGGAAGATT+GGG - chr6_4:6700577-6700596 Msa0973890:CDS 35.0%
TACCAATGTAAAGAGAGAAG+AGG - chr6_4:6700611-6700630 Msa0973890:CDS 35.0%
TACCTCTTCTCTCTTTACAT+TGG + chr6_4:6700616-6700635 None:intergenic 35.0%
ACTGATCAATGAATTGATGG+TGG - chr6_4:6700641-6700660 Msa0973890:CDS 35.0%
! CTGATCAATGAATTGATGGT+GGG - chr6_4:6700642-6700661 Msa0973890:CDS 35.0%
AGGAAAGAAGATGAGACAAA+AGG - chr6_4:6700671-6700690 Msa0973890:CDS 35.0%
TGGTTGTTCATACATGAACT+TGG - chr6_4:6700737-6700756 Msa0973890:CDS 35.0%
CAACAATGATATGCAGAAAC+TGG - chr6_4:6700963-6700982 Msa0973890:five_prime_UTR 35.0%
TATGGAGTTAACACTGCATG+TGG + chr6_4:6698980-6698999 None:intergenic 40.0%
! ATATGGCCTTGAACTGGATA+TGG + chr6_4:6698998-6699017 None:intergenic 40.0%
GCAAAACTTCTTCACCTTAG+AGG - chr6_4:6699037-6699056 Msa0973890:three_prime_UTR 40.0%
AGGTTATGTGAAAGCCTCTA+AGG + chr6_4:6699054-6699073 None:intergenic 40.0%
GAAACAAAGCAAGTTACTGG+AGG + chr6_4:6699313-6699332 None:intergenic 40.0%
AATGGTCTACTACCACTCAA+AGG - chr6_4:6699454-6699473 Msa0973890:CDS 40.0%
GTGTGTGTTTGTGTGTATCA+AGG - chr6_4:6699526-6699545 Msa0973890:CDS 40.0%
AAAGATCCTCGAACGCAATA+TGG - chr6_4:6699557-6699576 Msa0973890:CDS 40.0%
! CTCTTCAGTGTTAATTTGGG+TGG - chr6_4:6699768-6699787 Msa0973890:CDS 40.0%
! CTTCAGTGTTAATTTGGGTG+GGG - chr6_4:6699770-6699789 Msa0973890:CDS 40.0%
GGACCAATTGTGTATAGAGA+AGG + chr6_4:6700102-6700121 None:intergenic 40.0%
ATTAGGCCTGATCTTGTCAT+TGG - chr6_4:6700339-6700358 Msa0973890:intron 40.0%
ATAGAGGCCTAATAGCAAGT+TGG - chr6_4:6700406-6700425 Msa0973890:intron 40.0%
TGGTTCAACACTTTCTCTTG+CGG + chr6_4:6700435-6700454 None:intergenic 40.0%
GTGTTGAACCATCCTTCAAT+CGG - chr6_4:6700444-6700463 Msa0973890:CDS 40.0%
CTTGGACAAAGTGATCAATG+AGG - chr6_4:6700755-6700774 Msa0973890:CDS 40.0%
TATGGAGTTAACACTGCATG+TGG + chr6_4:6698980-6698999 None:intergenic 40.0%
! ATATGGCCTTGAACTGGATA+TGG + chr6_4:6698998-6699017 None:intergenic 40.0%
GCAAAACTTCTTCACCTTAG+AGG - chr6_4:6699037-6699056 Msa0973890:three_prime_UTR 40.0%
AGGTTATGTGAAAGCCTCTA+AGG + chr6_4:6699054-6699073 None:intergenic 40.0%
GAAACAAAGCAAGTTACTGG+AGG + chr6_4:6699313-6699332 None:intergenic 40.0%
AATGGTCTACTACCACTCAA+AGG - chr6_4:6699454-6699473 Msa0973890:CDS 40.0%
GTGTGTGTTTGTGTGTATCA+AGG - chr6_4:6699526-6699545 Msa0973890:CDS 40.0%
AAAGATCCTCGAACGCAATA+TGG - chr6_4:6699557-6699576 Msa0973890:CDS 40.0%
! CTCTTCAGTGTTAATTTGGG+TGG - chr6_4:6699768-6699787 Msa0973890:CDS 40.0%
! CTTCAGTGTTAATTTGGGTG+GGG - chr6_4:6699770-6699789 Msa0973890:CDS 40.0%
GGACCAATTGTGTATAGAGA+AGG + chr6_4:6700102-6700121 None:intergenic 40.0%
ATTAGGCCTGATCTTGTCAT+TGG - chr6_4:6700339-6700358 Msa0973890:intron 40.0%
ATAGAGGCCTAATAGCAAGT+TGG - chr6_4:6700406-6700425 Msa0973890:intron 40.0%
TGGTTCAACACTTTCTCTTG+CGG + chr6_4:6700435-6700454 None:intergenic 40.0%
GTGTTGAACCATCCTTCAAT+CGG - chr6_4:6700444-6700463 Msa0973890:CDS 40.0%
CTTGGACAAAGTGATCAATG+AGG - chr6_4:6700755-6700774 Msa0973890:CDS 40.0%
! GCATTGATATGGCCTTGAAC+TGG + chr6_4:6699004-6699023 None:intergenic 45.0%
AAGGGTCCAAAAGCCTTTGA+TGG - chr6_4:6699115-6699134 Msa0973890:CDS 45.0%
!! ACCTTTGAGACCATACCAGA+TGG - chr6_4:6699151-6699170 Msa0973890:CDS 45.0%
ACCATCTGGTATGGTCTCAA+AGG + chr6_4:6699155-6699174 None:intergenic 45.0%
! CGGTGTTAAACCATCTGGTA+TGG + chr6_4:6699164-6699183 None:intergenic 45.0%
ACCAGATGGTTTAACACCGA+TGG - chr6_4:6699165-6699184 Msa0973890:CDS 45.0%
!! TCCATCGGTGTTAAACCATC+TGG + chr6_4:6699169-6699188 None:intergenic 45.0%
GATGGTTTAACACCGATGGA+AGG - chr6_4:6699169-6699188 Msa0973890:CDS 45.0%
TTAACACCGATGGAAGGTGA+TGG - chr6_4:6699175-6699194 Msa0973890:CDS 45.0%
ACATCACCATCACCTTCCAT+CGG + chr6_4:6699184-6699203 None:intergenic 45.0%
CTTCATGAATCTGCTACTGC+TGG - chr6_4:6699280-6699299 Msa0973890:CDS 45.0%
! AGTGCTTGTTTCTTCTTGGC+TGG - chr6_4:6699406-6699425 Msa0973890:CDS 45.0%
TAAACCCACTTGAGTTAGCC+CGG - chr6_4:6699690-6699709 Msa0973890:CDS 45.0%
!! TTAGCCCGGTGGTATTGATT+TGG - chr6_4:6699704-6699723 Msa0973890:CDS 45.0%
!! TAGCCCGGTGGTATTGATTT+GGG - chr6_4:6699705-6699724 Msa0973890:CDS 45.0%
AGGTCCCAAATCAATACCAC+CGG + chr6_4:6699712-6699731 None:intergenic 45.0%
!! GTGGTATTGATTTGGGACCT+GGG - chr6_4:6699712-6699731 Msa0973890:CDS 45.0%
! TGATCTTGTCATTGGTGGCT+CGG - chr6_4:6700347-6700366 Msa0973890:intron 45.0%
!!! TGGCTCGGTTGTTTTGTCAT+CGG - chr6_4:6700362-6700381 Msa0973890:intron 45.0%
TTGAACCATCCTTCAATCGG+CGG - chr6_4:6700447-6700466 Msa0973890:CDS 45.0%
GATTCTTGACTCATTGCGGA+TGG - chr6_4:6700469-6700488 Msa0973890:CDS 45.0%
! ACCACTGAAAGTGTATGTGC+CGG - chr6_4:6700498-6700517 Msa0973890:CDS 45.0%
CCATCCCAATCTTCCATTCT+TGG + chr6_4:6700584-6700603 None:intergenic 45.0%
CCAAGAATGGAAGATTGGGA+TGG - chr6_4:6700581-6700600 Msa0973890:CDS 45.0%
!! GAATTGATGGTGGGAGAGAA+AGG - chr6_4:6700651-6700670 Msa0973890:CDS 45.0%
GAAGATGAGACAAAAGGCCA+TGG - chr6_4:6700677-6700696 Msa0973890:CDS 45.0%
TGCCTTCTTCTTCAACTCCA+TGG + chr6_4:6700697-6700716 None:intergenic 45.0%
! GCATTGATATGGCCTTGAAC+TGG + chr6_4:6699004-6699023 None:intergenic 45.0%
AAGGGTCCAAAAGCCTTTGA+TGG - chr6_4:6699115-6699134 Msa0973890:CDS 45.0%
!! ACCTTTGAGACCATACCAGA+TGG - chr6_4:6699151-6699170 Msa0973890:CDS 45.0%
ACCATCTGGTATGGTCTCAA+AGG + chr6_4:6699155-6699174 None:intergenic 45.0%
! CGGTGTTAAACCATCTGGTA+TGG + chr6_4:6699164-6699183 None:intergenic 45.0%
ACCAGATGGTTTAACACCGA+TGG - chr6_4:6699165-6699184 Msa0973890:CDS 45.0%
!! TCCATCGGTGTTAAACCATC+TGG + chr6_4:6699169-6699188 None:intergenic 45.0%
GATGGTTTAACACCGATGGA+AGG - chr6_4:6699169-6699188 Msa0973890:CDS 45.0%
TTAACACCGATGGAAGGTGA+TGG - chr6_4:6699175-6699194 Msa0973890:CDS 45.0%
ACATCACCATCACCTTCCAT+CGG + chr6_4:6699184-6699203 None:intergenic 45.0%
CTTCATGAATCTGCTACTGC+TGG - chr6_4:6699280-6699299 Msa0973890:CDS 45.0%
! AGTGCTTGTTTCTTCTTGGC+TGG - chr6_4:6699406-6699425 Msa0973890:CDS 45.0%
TAAACCCACTTGAGTTAGCC+CGG - chr6_4:6699690-6699709 Msa0973890:CDS 45.0%
!! TTAGCCCGGTGGTATTGATT+TGG - chr6_4:6699704-6699723 Msa0973890:CDS 45.0%
!! TAGCCCGGTGGTATTGATTT+GGG - chr6_4:6699705-6699724 Msa0973890:CDS 45.0%
AGGTCCCAAATCAATACCAC+CGG + chr6_4:6699712-6699731 None:intergenic 45.0%
!! GTGGTATTGATTTGGGACCT+GGG - chr6_4:6699712-6699731 Msa0973890:CDS 45.0%
! TGATCTTGTCATTGGTGGCT+CGG - chr6_4:6700347-6700366 Msa0973890:intron 45.0%
!!! TGGCTCGGTTGTTTTGTCAT+CGG - chr6_4:6700362-6700381 Msa0973890:intron 45.0%
TTGAACCATCCTTCAATCGG+CGG - chr6_4:6700447-6700466 Msa0973890:CDS 45.0%
GATTCTTGACTCATTGCGGA+TGG - chr6_4:6700469-6700488 Msa0973890:CDS 45.0%
! ACCACTGAAAGTGTATGTGC+CGG - chr6_4:6700498-6700517 Msa0973890:CDS 45.0%
CCATCCCAATCTTCCATTCT+TGG + chr6_4:6700584-6700603 None:intergenic 45.0%
CCAAGAATGGAAGATTGGGA+TGG - chr6_4:6700581-6700600 Msa0973890:CDS 45.0%
!! GAATTGATGGTGGGAGAGAA+AGG - chr6_4:6700651-6700670 Msa0973890:CDS 45.0%
GAAGATGAGACAAAAGGCCA+TGG - chr6_4:6700677-6700696 Msa0973890:CDS 45.0%
TGCCTTCTTCTTCAACTCCA+TGG + chr6_4:6700697-6700716 None:intergenic 45.0%
TTCGGTCCATATTGCGTTCG+AGG + chr6_4:6699566-6699585 None:intergenic 50.0%
GGTCCCAAATCAATACCACC+GGG + chr6_4:6699711-6699730 None:intergenic 50.0%
!! GGTGGTATTGATTTGGGACC+TGG - chr6_4:6699711-6699730 Msa0973890:CDS 50.0%
AGGCCTGATCTTGTCATTGG+TGG - chr6_4:6700342-6700361 Msa0973890:intron 50.0%
GAGCCACCAATGACAAGATC+AGG + chr6_4:6700348-6700367 None:intergenic 50.0%
!! GCGGACACCAACTTGCTATT+AGG + chr6_4:6700416-6700435 None:intergenic 50.0%
! AGAATCCGCCGATTGAAGGA+TGG + chr6_4:6700455-6700474 None:intergenic 50.0%
! GTCAAGAATCCGCCGATTGA+AGG + chr6_4:6700459-6700478 None:intergenic 50.0%
! GGCGGATTCTTGACTCATTG+CGG - chr6_4:6700465-6700484 Msa0973890:CDS 50.0%
TCCGGCACATACACTTTCAG+TGG + chr6_4:6700502-6700521 None:intergenic 50.0%
CCTACACAACATTGGCACTC+CGG + chr6_4:6700520-6700539 None:intergenic 50.0%
GGCCATGGAGTTGAAGAAGA+AGG - chr6_4:6700692-6700711 Msa0973890:CDS 50.0%
GGAGTTGAAGAAGAAGGCAG+AGG - chr6_4:6700698-6700717 Msa0973890:CDS 50.0%
GTTGAAGAAGAAGGCAGAGG+AGG - chr6_4:6700701-6700720 Msa0973890:CDS 50.0%
GCAGAGGAGGACACAAGATT+TGG - chr6_4:6700714-6700733 Msa0973890:CDS 50.0%
GAGGAGGACACAAGATTTGG+TGG - chr6_4:6700717-6700736 Msa0973890:CDS 50.0%
TTCGGTCCATATTGCGTTCG+AGG + chr6_4:6699566-6699585 None:intergenic 50.0%
GGTCCCAAATCAATACCACC+GGG + chr6_4:6699711-6699730 None:intergenic 50.0%
!! GGTGGTATTGATTTGGGACC+TGG - chr6_4:6699711-6699730 Msa0973890:CDS 50.0%
AGGCCTGATCTTGTCATTGG+TGG - chr6_4:6700342-6700361 Msa0973890:intron 50.0%
GAGCCACCAATGACAAGATC+AGG + chr6_4:6700348-6700367 None:intergenic 50.0%
!! GCGGACACCAACTTGCTATT+AGG + chr6_4:6700416-6700435 None:intergenic 50.0%
! AGAATCCGCCGATTGAAGGA+TGG + chr6_4:6700455-6700474 None:intergenic 50.0%
! GTCAAGAATCCGCCGATTGA+AGG + chr6_4:6700459-6700478 None:intergenic 50.0%
! GGCGGATTCTTGACTCATTG+CGG - chr6_4:6700465-6700484 Msa0973890:CDS 50.0%
TCCGGCACATACACTTTCAG+TGG + chr6_4:6700502-6700521 None:intergenic 50.0%
CCTACACAACATTGGCACTC+CGG + chr6_4:6700520-6700539 None:intergenic 50.0%
GGCCATGGAGTTGAAGAAGA+AGG - chr6_4:6700692-6700711 Msa0973890:CDS 50.0%
GGAGTTGAAGAAGAAGGCAG+AGG - chr6_4:6700698-6700717 Msa0973890:CDS 50.0%
GTTGAAGAAGAAGGCAGAGG+AGG - chr6_4:6700701-6700720 Msa0973890:CDS 50.0%
GCAGAGGAGGACACAAGATT+TGG - chr6_4:6700714-6700733 Msa0973890:CDS 50.0%
GAGGAGGACACAAGATTTGG+TGG - chr6_4:6700717-6700736 Msa0973890:CDS 50.0%
ACCACCGGGCTAACTCAAGT+GGG + chr6_4:6699697-6699716 None:intergenic 55.0%
TACCACCGGGCTAACTCAAG+TGG + chr6_4:6699698-6699717 None:intergenic 55.0%
GAATCGAACCTGAGACCTCG+AGG + chr6_4:6699749-6699768 None:intergenic 55.0%
! CCGGAGTGCCAATGTTGTGT+AGG - chr6_4:6700517-6700536 Msa0973890:CDS 55.0%
ACCACCGGGCTAACTCAAGT+GGG + chr6_4:6699697-6699716 None:intergenic 55.0%
TACCACCGGGCTAACTCAAG+TGG + chr6_4:6699698-6699717 None:intergenic 55.0%
GAATCGAACCTGAGACCTCG+AGG + chr6_4:6699749-6699768 None:intergenic 55.0%
! CCGGAGTGCCAATGTTGTGT+AGG - chr6_4:6700517-6700536 Msa0973890:CDS 55.0%
ACCCACTTGAGTTAGCCCGG+TGG - chr6_4:6699693-6699712 Msa0973890:CDS 60.0%
! TCGAGGAGGAGCATACTCCC+AGG + chr6_4:6699732-6699751 None:intergenic 60.0%
! TGGGAGTATGCTCCTCCTCG+AGG - chr6_4:6699731-6699750 Msa0973890:CDS 60.0%
ATGCTCCTCCTCGAGGTCTC+AGG - chr6_4:6699738-6699757 Msa0973890:CDS 60.0%
TCGAACCTGAGACCTCGAGG+AGG + chr6_4:6699746-6699765 None:intergenic 60.0%
ACCCACTTGAGTTAGCCCGG+TGG - chr6_4:6699693-6699712 Msa0973890:CDS 60.0%
! TCGAGGAGGAGCATACTCCC+AGG + chr6_4:6699732-6699751 None:intergenic 60.0%
! TGGGAGTATGCTCCTCCTCG+AGG - chr6_4:6699731-6699750 Msa0973890:CDS 60.0%
ATGCTCCTCCTCGAGGTCTC+AGG - chr6_4:6699738-6699757 Msa0973890:CDS 60.0%
TCGAACCTGAGACCTCGAGG+AGG + chr6_4:6699746-6699765 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 6698880 6701005 6698880 ID=Msa0973890;Name=Msa0973890
chr6_4 mRNA 6698880 6701005 6698880 ID=Msa0973890-mRNA-1;Parent=Msa0973890;Name=Msa0973890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=73|1|1|1|1|1|2|208|484
chr6_4 exon 6698880 6700019 6698880 ID=Msa0973890-mRNA-1:exon:2724;Parent=Msa0973890-mRNA-1
chr6_4 exon 6700410 6701005 6700410 ID=Msa0973890-mRNA-1:exon:2723;Parent=Msa0973890-mRNA-1
chr6_4 five_prime_UTR 6700933 6701005 6700933 ID=Msa0973890-mRNA-1:five_prime_utr;Parent=Msa0973890-mRNA-1
chr6_4 CDS 6700410 6700932 6700410 ID=Msa0973890-mRNA-1:cds;Parent=Msa0973890-mRNA-1
chr6_4 CDS 6699088 6700019 6699088 ID=Msa0973890-mRNA-1:cds;Parent=Msa0973890-mRNA-1
chr6_4 three_prime_UTR 6698880 6699087 6698880 ID=Msa0973890-mRNA-1:three_prime_utr;Parent=Msa0973890-mRNA-1
Gene Sequence

>Msa0973890

ATGAGTAACTTTGCAAAGAGAAAACCACATGCAGTGTTAACTCCATATCCAGTTCAAGGCCATATCAATGCATTGTTGAAACTAGCAAAACTTCTTCACCTTAGAGGCTTTCACATAACCTTTGTCAACACTGAATACAATCACAAACGTTTGCTCAAATCAAAGGGTCCAAAAGCCTTTGATGGTTTCAATGATTTTACCTTTGAGACCATACCAGATGGTTTAACACCGATGGAAGGTGATGGTGATGTTAGTCAAGATTTACGTGCTCTTTGTCGATCAATCATCAAGAACTTTTGTCACTTTTTTGGTGAACTTTTTGCTAAACTTCATGAATCTGCTACTGCTGGTTATATACCTCCAGTAACTTGCTTTGTTTCTGATTGCTATATGCCATTTACAGTAGAAGTTGCTGAAGAACATTCACTCCCAATTGTTCTATTTTCGCCATGTAGTGCTTGTTTCTTCTTGGCTGGTTTTCATATTCCTAAATTGTTTCAGAATGGTCTACTACCACTCAAAGATGAGAGTTATGAAACAAATGGATATTTGGACACTATAGTTGATTGGATTCCAGTTTTGAAAAACTTTAGATTGAAGGATCTTCCTACTTTAATTAGGACAAAAGATCCTAATGACTTGATGATAGAATTTATGACTGAAGTGGGAGATAAATGTCACAAAGCTTCTGCTATTGTTTTCAACACTTCTTATGAACTTGAGAGTAATGTTATGAATGCTCTTAGTTCTATATTTCCTTCTCTATACACAATTGGTCCGTTTGCTTCGTTTTTAAGTCAAAGTCCGCAAAATCACTTGACAACTTTAGATTGTAATCTTTGGAAAGAAGATACTAAATGTCTTGAATGGCTTGAATCAAAAGAATCAAAATCTGTTGTTTATGTAAATTTTGGCAGCATCATAGTTATGTCTCAAGAGAAATTGTTAGAGTTTGCTTGGGGTTTAGCCAACAGCAAGAAACCTTTTTTGTGGATTATTAGGCCTGATCTTGTCATTGGTGGCTCGGTTGTTTTGTCATCGGAGTTTGTGAATGAAATTTTAGATAGAGGCCTAATAGCAAGTTGGTGTCCGCAAGAGAAAGTGTTGAACCATCCTTCAATCGGCGGATTCTTGACTCATTGCGGATGGAACTCAACCACTGAAAGTGTATGTGCCGGAGTGCCAATGTTGTGTAGGCCATTTTTTGCTGATCAACTACCTAACAGTAGAATTATTTGCCAAGAATGGAAGATTGGGATGGAAATTGATACCAATGTAAAGAGAGAAGAGGTAGAGAAACTGATCAATGAATTGATGGTGGGAGAGAAAGGAAAGAAGATGAGACAAAAGGCCATGGAGTTGAAGAAGAAGGCAGAGGAGGACACAAGATTTGGTGGTTGTTCATACATGAACTTGGACAAAGTGATCAATGAGGTCTTGCTTAAACAATATTAG

Protein sequence

>Msa0973890

MSNFAKRKPHAVLTPYPVQGHINALLKLAKLLHLRGFHITFVNTEYNHKRLLKSKGPKAFDGFNDFTFETIPDGLTPMEGDGDVSQDLRALCRSIIKNFCHFFGELFAKLHESATAGYIPPVTCFVSDCYMPFTVEVAEEHSLPIVLFSPCSACFFLAGFHIPKLFQNGLLPLKDESYETNGYLDTIVDWIPVLKNFRLKDLPTLIRTKDPNDLMIEFMTEVGDKCHKASAIVFNTSYELESNVMNALSSIFPSLYTIGPFASFLSQSPQNHLTTLDCNLWKEDTKCLEWLESKESKSVVYVNFGSIIVMSQEKLLEFAWGLANSKKPFLWIIRPDLVIGGSVVLSSEFVNEILDRGLIASWCPQEKVLNHPSIGGFLTHCGWNSTTESVCAGVPMLCRPFFADQLPNSRIICQEWKIGMEIDTNVKREEVEKLINELMVGEKGKKMRQKAMELKKKAEEDTRFGGCSYMNLDKVINEVLLKQY*