AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0888900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0888900 MtrunA17_Chr6g0461551 93.838 357 20 2 1 356 1 356 0.0 682
Msa0888900 MtrunA17_Chr7g0253181 25.424 295 196 6 60 344 33 313 1.04e-20 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0888900 AT1G55370.2 43.234 303 131 6 55 355 60 323 4.52e-68 219
Msa0888900 AT1G55370.1 40.892 269 119 6 55 321 60 290 6.22e-52 176
Msa0888900 AT1G64770.1 26.518 313 200 10 53 356 26 317 2.30e-13 71.2

Find 79 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTCATTTGATTCTTTCT+TGG 0.200378 6_1:+54448798 None:intergenic
TTTCATGGTCTCCTTCTAAT+TGG 0.239884 6_1:-54451714 Msa0888900:CDS
TGGATTGATTACTTCTTATA+AGG 0.259146 6_1:-54451872 Msa0888900:CDS
ATCTTGGTTTCGAGAAATTA+AGG 0.265711 6_1:-54448845 Msa0888900:CDS
TAAGGTACTGAAGCTACTTT+TGG 0.272432 6_1:+54452027 None:intergenic
ACTTCATTTGATTCTTTCTT+GGG 0.279314 6_1:+54448799 None:intergenic
TTCTCCTCTTCGCTCGTATT+CGG 0.290229 6_1:+54450821 None:intergenic
AGAAAGGATTTGGAAATATA+TGG 0.300634 6_1:-54450802 Msa0888900:CDS
TCAGTATTAGTTGGAAGAAA+TGG 0.309706 6_1:-54450296 Msa0888900:CDS
TGTTGAATATAGCTAGAAAA+TGG 0.311886 6_1:+54452078 None:intergenic
CCTATTGCATAAGTTGCTTC+TGG 0.319165 6_1:+54450905 None:intergenic
CAATTCTGAGGAATCTATTC+AGG 0.346682 6_1:-54451671 Msa0888900:intron
GCAGTGTCAGAAGGAGAATT+TGG 0.352287 6_1:-54451808 Msa0888900:CDS
AGCGAAGAGGAGAAAGGATT+TGG 0.367639 6_1:-54450812 Msa0888900:CDS
TGGAAGTTGTATGGCCAAAA+TGG 0.369055 6_1:-54451935 Msa0888900:CDS
TTCATGGTCTCCTTCTAATT+GGG 0.370031 6_1:-54451713 Msa0888900:CDS
TTTAATCCAATCTTGTCATA+TGG 0.386445 6_1:+54451043 None:intergenic
TGAAGATAGTGGTGAGGAAA+TGG 0.390876 6_1:-54450711 Msa0888900:CDS
GGTGTGTTTCTAGTAGATTT+TGG 0.405033 6_1:+54452120 None:intergenic
GTGTAAACTCTCTCTTGTAT+TGG 0.410082 6_1:+54452052 None:intergenic
AAAATAAACTCCGATTCAAT+AGG 0.413697 6_1:+54450851 None:intergenic
CCAGAAGCAACTTATGCAAT+AGG 0.428313 6_1:-54450905 Msa0888900:CDS
TCTAAGTAGTCATAGTTGAT+TGG 0.433432 6_1:+54452000 None:intergenic
CTGTTCAGTCCAGGCTCATC+AGG 0.435338 6_1:-54450257 Msa0888900:CDS
TTATGCAAAACCCAATTAGA+AGG 0.440628 6_1:+54451703 None:intergenic
TGATTATCTGTTCCCCAACT+TGG 0.446166 6_1:+54450755 None:intergenic
TTTGGTGATGCTGTTATTCA+AGG 0.448112 6_1:-54451790 Msa0888900:CDS
GAAGCTTTACACTCATTGAC+AGG 0.450398 6_1:-54450634 Msa0888900:CDS
AATTGATTCATGAGTAGATA+AGG 0.455135 6_1:+54452263 None:intergenic
GCAGAAGATAGTGAAGATAG+TGG 0.458702 6_1:-54450722 Msa0888900:CDS
AAAGGACCATATGACAAGAT+TGG 0.464962 6_1:-54451049 Msa0888900:CDS
CCTCATTTGTTTATGAAGCA+TGG 0.467003 6_1:-54452178 Msa0888900:exon
AGAAGAAACTCAGTATTAGT+TGG 0.473799 6_1:-54450305 Msa0888900:CDS
CTGATGAGCCTGGACTGAAC+AGG 0.479462 6_1:+54450258 None:intergenic
AAAATGATGATGAAGTTTCA+TGG 0.482731 6_1:-54451729 Msa0888900:CDS
TCATTTGATTCTTTCTTGGG+TGG 0.486537 6_1:+54448802 None:intergenic
GAAATTAAGGATATTGAAAG+AGG 0.500200 6_1:-54448832 Msa0888900:CDS
GGAGTCACATTTGAAGAAGT+TGG 0.501672 6_1:-54451958 Msa0888900:CDS
CTTTCAATTCCTGATGAGCC+TGG 0.508570 6_1:+54450248 None:intergenic
AGAAGTTGGTGGAAGTTGTA+TGG 0.511764 6_1:-54451944 Msa0888900:CDS
TAGCCGACCGCCTATTGAAT+CGG 0.513659 6_1:-54450861 Msa0888900:CDS
TCAATGAGTGTAAAGCTTCG+AGG 0.514142 6_1:+54450638 None:intergenic
ATTAAAATACATTGTGACAT+TGG 0.516339 6_1:-54451026 Msa0888900:CDS
TACTGTCAAATGACTAAGGA+TGG 0.517706 6_1:+54450934 None:intergenic
TCATAGTTGATTGGTTGGTA+AGG 0.520007 6_1:+54452009 None:intergenic
AATACGAGCGAAGAGGAGAA+AGG 0.520545 6_1:-54450818 Msa0888900:CDS
TCTTTGCCACTTCAAATGAC+AGG 0.523333 6_1:-54450959 Msa0888900:CDS
AGTAGTCATAGTTGATTGGT+TGG 0.527301 6_1:+54452004 None:intergenic
ATTGTGACATTGGAAGAAGA+TGG 0.536047 6_1:-54451016 Msa0888900:CDS
TACTTAGAACAAGAATTCAA+TGG 0.537821 6_1:-54451985 Msa0888900:CDS
TGCTTACTGTCAAATGACTA+AGG 0.541257 6_1:+54450930 None:intergenic
GGTAAACAAATATGTGATGA+TGG 0.544469 6_1:+54452099 None:intergenic
ACATTGGAAGAAGATGGATT+AGG 0.545100 6_1:-54451010 Msa0888900:CDS
GAAACATACCTGTTCAGTCC+AGG 0.552112 6_1:-54450266 Msa0888900:CDS
AGATAGTGAAGATAGTGGTG+AGG 0.563650 6_1:-54450717 Msa0888900:CDS
TCCTCTTCGCTCGTATTCGG+AGG 0.567150 6_1:+54450824 None:intergenic
CTTAATACTGCAGTGTCAGA+AGG 0.569822 6_1:-54451817 Msa0888900:CDS
GTCACATTTGAAGAAGTTGG+TGG 0.580862 6_1:-54451955 Msa0888900:CDS
ATGGAACCTGTCATTTGAAG+TGG 0.582698 6_1:+54450953 None:intergenic
GAACAAGAATTCAATGGACA+TGG 0.592739 6_1:-54451979 Msa0888900:CDS
CCATGCTTCATAAACAAATG+AGG 0.596509 6_1:+54452178 None:intergenic
AGGTACTGTTTCATGCATCA+AGG 0.596756 6_1:+54452198 None:intergenic
CAATCCACTTGGTAGCAACA+TGG 0.606969 6_1:+54451888 None:intergenic
GCTACCATGTTGCTACCAAG+TGG 0.611640 6_1:-54451892 Msa0888900:CDS
TGTCATTTGAAGTGGCAAAG+AGG 0.615397 6_1:+54450961 None:intergenic
TCATCATCTTCACTATCAAG+AGG 0.627498 6_1:+54448766 None:intergenic
CAGGTAGTATTAATAAACAA+AGG 0.628059 6_1:-54451067 Msa0888900:CDS
CTTCTTATAAGGCACCTATG+TGG 0.628349 6_1:-54451861 Msa0888900:CDS
TATAAGGCACCTATGTGGCA+TGG 0.628930 6_1:-54451856 Msa0888900:CDS
GGTGATGCTGTTATTCAAGG+AGG 0.632525 6_1:-54451787 Msa0888900:CDS
TAATATTAAAGGCAATTCTG+AGG 0.647761 6_1:-54451683 Msa0888900:CDS
ATAAACTCCGATTCAATAGG+CGG 0.659158 6_1:+54450854 None:intergenic
CAAGCAAGAAAACCAACTAG+AGG 0.664372 6_1:-54452239 Msa0888900:five_prime_UTR
TAAGAAGTAATCAATCCACT+TGG 0.665933 6_1:+54451877 None:intergenic
AAGGCACCTATGTGGCATGG+TGG 0.667629 6_1:-54451853 Msa0888900:CDS
ACTCCGATTCAATAGGCGGT+CGG 0.667753 6_1:+54450858 None:intergenic
TCCTCCGAATACGAGCGAAG+AGG 0.673403 6_1:-54450825 Msa0888900:CDS
AAGCTTTACACTCATTGACA+GGG 0.676259 6_1:-54450633 Msa0888900:intron
TACTGTTTCATGCATCAAGG+AGG 0.696686 6_1:+54452201 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTTTTTTTTAATCA+GGG - chr6_1:54450673-54450692 Msa0888900:CDS 10.0%
!!! ATTTTATCATACATATATTT+TGG + chr6_1:54451066-54451085 None:intergenic 10.0%
!!! ATTTAAAATAGGTAAAAATA+TGG + chr6_1:54451318-54451337 None:intergenic 10.0%
!! ATTAATTAAAGTTGTATTGA+TGG - chr6_1:54449770-54449789 Msa0888900:intron 15.0%
!! ATAAGATTAAAATAAAGTCA+AGG - chr6_1:54450487-54450506 Msa0888900:intron 15.0%
!! TAAGATTAAAATAAAGTCAA+GGG - chr6_1:54450488-54450507 Msa0888900:intron 15.0%
!!! GGTTTTTTTTTTTTTTAATC+AGG - chr6_1:54450672-54450691 Msa0888900:CDS 15.0%
!!! AAAGAAAGTTTTATAATGAT+TGG + chr6_1:54451032-54451051 None:intergenic 15.0%
!!! AGATTTTGGTATGAAAATAT+TGG + chr6_1:54448871-54448890 None:intergenic 20.0%
!! TCTGTTTAATGGTTATTATT+AGG - chr6_1:54449354-54449373 Msa0888900:intron 20.0%
!! CTGTTTAATGGTTATTATTA+GGG - chr6_1:54449355-54449374 Msa0888900:intron 20.0%
!! ATTAAAATACATTGTGACAT+TGG - chr6_1:54449976-54449995 Msa0888900:intron 20.0%
!! TATCATTAAATCTATTGTTG+AGG + chr6_1:54450409-54450428 None:intergenic 20.0%
!!! TTGTAATTTTGATCAATGAA+GGG - chr6_1:54450594-54450613 Msa0888900:intron 20.0%
!! AAAATGATTATTTACTCGTT+TGG - chr6_1:54450651-54450670 Msa0888900:CDS 20.0%
!! GCATCATGATATTATATATT+TGG + chr6_1:54450883-54450902 None:intergenic 20.0%
!! ATATAATATCATGATGCTTA+AGG - chr6_1:54450886-54450905 Msa0888900:CDS 20.0%
!!! CATTTCTTTTGTTTAATATC+TGG + chr6_1:54451259-54451278 None:intergenic 20.0%
!!! TGTTCAGCTAAATTTAAAAT+AGG + chr6_1:54451329-54451348 None:intergenic 20.0%
!! AATGAATAAACACATTATGT+AGG - chr6_1:54451565-54451584 Msa0888900:intron 20.0%
!!! GTGATATGAATATACTTTTT+TGG - chr6_1:54452127-54452146 Msa0888900:CDS 20.0%
!! AATTGATTCATGAGTAGATA+AGG + chr6_1:54448742-54448761 None:intergenic 25.0%
!!! ATTTTTTTTGTTCCTCTAGT+TGG + chr6_1:54448778-54448797 None:intergenic 25.0%
! TGTTGAATATAGCTAGAAAA+TGG + chr6_1:54448927-54448946 None:intergenic 25.0%
! TACTTAGAACAAGAATTCAA+TGG - chr6_1:54449017-54449036 Msa0888900:intron 25.0%
!!! TCCATTTTTCAATTCCATTT+TGG + chr6_1:54449084-54449103 None:intergenic 25.0%
! TGGATTGATTACTTCTTATA+AGG - chr6_1:54449130-54449149 Msa0888900:intron 25.0%
!! AAAATGATGATGAAGTTTCA+TGG - chr6_1:54449273-54449292 Msa0888900:intron 25.0%
!! TGGGTTTTGCATAATATTAA+AGG - chr6_1:54449308-54449327 Msa0888900:intron 25.0%
! TAATATTAAAGGCAATTCTG+AGG - chr6_1:54449319-54449338 Msa0888900:intron 25.0%
! TTGAAATTTCGATACAATGA+GGG + chr6_1:54449412-54449431 None:intergenic 25.0%
!! TTTGAAATTTCGATACAATG+AGG + chr6_1:54449413-54449432 None:intergenic 25.0%
! TCACAATAACTCTTCATATA+GGG + chr6_1:54449575-54449594 None:intergenic 25.0%
! AGAGTTATTGTGAGTATTTA+AGG - chr6_1:54449582-54449601 Msa0888900:intron 25.0%
!!! TTTAAGGATTATTTTAGCGT+CGG - chr6_1:54449598-54449617 Msa0888900:intron 25.0%
!!! TTAAGAATTTTGATGCATTG+AGG - chr6_1:54449660-54449679 Msa0888900:intron 25.0%
!!! TAAGAATTTTGATGCATTGA+GGG - chr6_1:54449661-54449680 Msa0888900:intron 25.0%
!! ATTGCCCCTTATTATTATTT+TGG - chr6_1:54449727-54449746 Msa0888900:intron 25.0%
! CCAACCAAAATAATAATAAG+GGG + chr6_1:54449734-54449753 None:intergenic 25.0%
! GCCAACCAAAATAATAATAA+GGG + chr6_1:54449735-54449754 None:intergenic 25.0%
! TGCCAACCAAAATAATAATA+AGG + chr6_1:54449736-54449755 None:intergenic 25.0%
!!! ATTATTATTTTGGTTGGCAA+AGG - chr6_1:54449737-54449756 Msa0888900:intron 25.0%
! AAATTGTGCGAAAAATCATA+AGG + chr6_1:54449871-54449890 None:intergenic 25.0%
! CAGGTAGTATTAATAAACAA+AGG - chr6_1:54449935-54449954 Msa0888900:intron 25.0%
! TTTAATCCAATCTTGTCATA+TGG + chr6_1:54449962-54449981 None:intergenic 25.0%
! AAAATAAACTCCGATTCAAT+AGG + chr6_1:54450154-54450173 None:intergenic 25.0%
! AGAAAGGATTTGGAAATATA+TGG - chr6_1:54450200-54450219 Msa0888900:intron 25.0%
! ATAAACTTGCACATATACTT+GGG - chr6_1:54450426-54450445 Msa0888900:intron 25.0%
! TAAAGCTGTTTGTTCATAAA+TGG + chr6_1:54450452-54450471 None:intergenic 25.0%
! ATAAAGTCAAGGGAATATAA+CGG - chr6_1:54450498-54450517 Msa0888900:intron 25.0%
!!! CTTGTAATTTTGATCAATGA+AGG - chr6_1:54450593-54450612 Msa0888900:intron 25.0%
! TATATTTGGATTGTGTAGAT+AGG + chr6_1:54450869-54450888 None:intergenic 25.0%
!! AAAATATGGTGAATGGATTT+AGG + chr6_1:54451304-54451323 None:intergenic 25.0%
! ATAGGTAAAAATATGGTGAA+TGG + chr6_1:54451311-54451330 None:intergenic 25.0%
! ATTCATCTAATTCCAACATA+AGG - chr6_1:54451357-54451376 Msa0888900:intron 25.0%
!! GAAAAATAAAAGCACATTGA+AGG - chr6_1:54451417-54451436 Msa0888900:intron 25.0%
! GTTAATTCCAACTAAATGTT+GGG + chr6_1:54451482-54451501 None:intergenic 25.0%
!! GATTTATGAGTAGAGTTTTA+TGG + chr6_1:54451514-54451533 None:intergenic 25.0%
!!! CAAATCCATTATTTTGTGAA+GGG + chr6_1:54451860-54451879 None:intergenic 25.0%
!! TTTCTGAAGAAAAAAAATCC+CGG - chr6_1:54451958-54451977 Msa0888900:CDS 25.0%
!!! TTCACGTATTTTTGAAAGAT+GGG - chr6_1:54452050-54452069 Msa0888900:CDS 25.0%
! GAAATTAAGGATATTGAAAG+AGG - chr6_1:54452170-54452189 Msa0888900:exon 25.0%
! ACTTCATTTGATTCTTTCTT+GGG + chr6_1:54452206-54452225 None:intergenic 25.0%
GGTAAACAAATATGTGATGA+TGG + chr6_1:54448906-54448925 None:intergenic 30.0%
TCTAAGTAGTCATAGTTGAT+TGG + chr6_1:54449005-54449024 None:intergenic 30.0%
GCCAAAATGGAATTGAAAAA+TGG - chr6_1:54449080-54449099 Msa0888900:intron 30.0%
TAAGAAGTAATCAATCCACT+TGG + chr6_1:54449128-54449147 None:intergenic 30.0%
TTATGCAAAACCCAATTAGA+AGG + chr6_1:54449302-54449321 None:intergenic 30.0%
ATCTATTCAGGTCTGTTTAA+TGG - chr6_1:54449343-54449362 Msa0888900:intron 30.0%
ACAATACGTAAGTATACTGA+AGG + chr6_1:54449513-54449532 None:intergenic 30.0%
GTATTGTCATATTAGTCCTT+CGG - chr6_1:54449526-54449545 Msa0888900:intron 30.0%
TGACAATAAGTAAATACCGA+AGG + chr6_1:54449545-54449564 None:intergenic 30.0%
CTCACAATAACTCTTCATAT+AGG + chr6_1:54449576-54449595 None:intergenic 30.0%
!!! TTAAGGATTATTTTAGCGTC+GGG - chr6_1:54449599-54449618 Msa0888900:intron 30.0%
!!! CCCCTTATTATTATTTTGGT+TGG - chr6_1:54449731-54449750 Msa0888900:intron 30.0%
!!! TGGTTATTTTAGAAGTGTCT+CGG - chr6_1:54449790-54449809 Msa0888900:intron 30.0%
! ATCATAAGGTGTTAGATTAG+TGG + chr6_1:54449857-54449876 None:intergenic 30.0%
ACCTTGAATATATCTTATGC+AGG - chr6_1:54449916-54449935 Msa0888900:intron 30.0%
ACCTGCATAAGATATATTCA+AGG + chr6_1:54449920-54449939 None:intergenic 30.0%
! TTAAGCAATTTTTGCCAAGT+TGG - chr6_1:54450233-54450252 Msa0888900:intron 30.0%
! TAAGCAATTTTTGCCAAGTT+GGG - chr6_1:54450234-54450253 Msa0888900:intron 30.0%
!! TCTCTCTTTTAACTGTTTGT+AGG + chr6_1:54450320-54450339 None:intergenic 30.0%
GATAAACTTGCACATATACT+TGG - chr6_1:54450425-54450444 Msa0888900:intron 30.0%
AGAAGAAACTCAGTATTAGT+TGG - chr6_1:54450697-54450716 Msa0888900:CDS 30.0%
TCAGTATTAGTTGGAAGAAA+TGG - chr6_1:54450706-54450725 Msa0888900:CDS 30.0%
AAGTTTGCATACATATGTGT+TGG - chr6_1:54450784-54450803 Msa0888900:CDS 30.0%
TCTTGTGGACTTAATACAAT+TGG + chr6_1:54450829-54450848 None:intergenic 30.0%
TATTAAGTCCACAAGATGTA+TGG - chr6_1:54450833-54450852 Msa0888900:CDS 30.0%
AATTAATTCAACAGCGTGTT+CGG - chr6_1:54450935-54450954 Msa0888900:CDS 30.0%
! CTCATGAACACATTAACTTT+TGG - chr6_1:54450975-54450994 Msa0888900:CDS 30.0%
TAAACTTCCCAACATTTAGT+TGG - chr6_1:54451472-54451491 Msa0888900:intron 30.0%
GGTTAATTCCAACTAAATGT+TGG + chr6_1:54451483-54451502 None:intergenic 30.0%
!! TAGAGTTTTATGGAAGTAGT+TGG + chr6_1:54451504-54451523 None:intergenic 30.0%
AAACACATTATGTAGGAACA+AGG - chr6_1:54451572-54451591 Msa0888900:intron 30.0%
!! GCAAATCCATTATTTTGTGA+AGG + chr6_1:54451861-54451880 None:intergenic 30.0%
ATAATGTACCACTTCTCTAT+TGG + chr6_1:54451885-54451904 None:intergenic 30.0%
CAATAAAGTTGTAGTTGAGT+TGG - chr6_1:54451917-54451936 Msa0888900:CDS 30.0%
GACATATAAGGTAGGTATTT+GGG + chr6_1:54452006-54452025 None:intergenic 30.0%
AGACATATAAGGTAGGTATT+TGG + chr6_1:54452007-54452026 None:intergenic 30.0%
AATACCTACCTTATATGTCT+TGG - chr6_1:54452007-54452026 Msa0888900:CDS 30.0%
GTATTAAGCCAAGACATATA+AGG + chr6_1:54452018-54452037 None:intergenic 30.0%
!! GTTCACGTATTTTTGAAAGA+TGG - chr6_1:54452049-54452068 Msa0888900:CDS 30.0%
!!! CTTTTTTGGATAGACAATCT+TGG - chr6_1:54452141-54452160 Msa0888900:CDS 30.0%
ATCTTGGTTTCGAGAAATTA+AGG - chr6_1:54452157-54452176 Msa0888900:CDS 30.0%
CACTTCATTTGATTCTTTCT+TGG + chr6_1:54452207-54452226 None:intergenic 30.0%
CCATGCTTCATAAACAAATG+AGG + chr6_1:54448827-54448846 None:intergenic 35.0%
CCTCATTTGTTTATGAAGCA+TGG - chr6_1:54448824-54448843 Msa0888900:CDS 35.0%
!!! GGTGTGTTTCTAGTAGATTT+TGG + chr6_1:54448885-54448904 None:intergenic 35.0%
GTGTAAACTCTCTCTTGTAT+TGG + chr6_1:54448953-54448972 None:intergenic 35.0%
!!! AAGGTACTGAAGCTACTTTT+GGG + chr6_1:54448977-54448996 None:intergenic 35.0%
!!! TAAGGTACTGAAGCTACTTT+TGG + chr6_1:54448978-54448997 None:intergenic 35.0%
! TCATAGTTGATTGGTTGGTA+AGG + chr6_1:54448996-54449015 None:intergenic 35.0%
AGTAGTCATAGTTGATTGGT+TGG + chr6_1:54449001-54449020 None:intergenic 35.0%
GAACAAGAATTCAATGGACA+TGG - chr6_1:54449023-54449042 Msa0888900:intron 35.0%
!! TTTGGTGATGCTGTTATTCA+AGG - chr6_1:54449212-54449231 Msa0888900:intron 35.0%
TTTCATGGTCTCCTTCTAAT+TGG - chr6_1:54449288-54449307 Msa0888900:intron 35.0%
TTCATGGTCTCCTTCTAATT+GGG - chr6_1:54449289-54449308 Msa0888900:intron 35.0%
! CAATTCTGAGGAATCTATTC+AGG - chr6_1:54449331-54449350 Msa0888900:intron 35.0%
!!! TAAGGATTATTTTAGCGTCG+GGG - chr6_1:54449600-54449619 Msa0888900:intron 35.0%
GTTTGATTCCTGAATGTGTA+AGG + chr6_1:54449702-54449721 None:intergenic 35.0%
AAAGGACCATATGACAAGAT+TGG - chr6_1:54449953-54449972 Msa0888900:intron 35.0%
ATTGTGACATTGGAAGAAGA+TGG - chr6_1:54449986-54450005 Msa0888900:intron 35.0%
! ACATTGGAAGAAGATGGATT+AGG - chr6_1:54449992-54450011 Msa0888900:intron 35.0%
TACTGTCAAATGACTAAGGA+TGG + chr6_1:54450071-54450090 None:intergenic 35.0%
TGCTTACTGTCAAATGACTA+AGG + chr6_1:54450075-54450094 None:intergenic 35.0%
ATAAACTCCGATTCAATAGG+CGG + chr6_1:54450151-54450170 None:intergenic 35.0%
! AAGCAATTTTTGCCAAGTTG+GGG - chr6_1:54450235-54450254 Msa0888900:intron 35.0%
AAGCTTTACACTCATTGACA+GGG - chr6_1:54450369-54450388 Msa0888900:intron 35.0%
GACTTAATACAATTGGTTGG+AGG + chr6_1:54450822-54450841 None:intergenic 35.0%
GTGGACTTAATACAATTGGT+TGG + chr6_1:54450825-54450844 None:intergenic 35.0%
CATGCAAGTTCTTTCATGTT+TGG - chr6_1:54451159-54451178 Msa0888900:intron 35.0%
GACTGAATTCTACCTTATGT+TGG + chr6_1:54451372-54451391 None:intergenic 35.0%
GAAGTTTAGTGTAGAAGTAG+AGG + chr6_1:54451460-54451479 None:intergenic 35.0%
TGACTGTTGAGCCAAATTAA+AGG - chr6_1:54451610-54451629 Msa0888900:intron 35.0%
ATCTTTCGTCATTCTTGCAA+TGG + chr6_1:54451641-54451660 None:intergenic 35.0%
TTGCACCCTTCACAAAATAA+TGG - chr6_1:54451852-54451871 Msa0888900:CDS 35.0%
GAGTTGGCAAAACATGAAAT+CGG - chr6_1:54451933-54451952 Msa0888900:CDS 35.0%
AGAAAAAAAATCCCGGTTAG+AGG - chr6_1:54451965-54451984 Msa0888900:CDS 35.0%
TAAGCCAAGACATATAAGGT+AGG + chr6_1:54452014-54452033 None:intergenic 35.0%
TCATTTGATTCTTTCTTGGG+TGG + chr6_1:54452203-54452222 None:intergenic 35.0%
TCATCATCTTCACTATCAAG+AGG + chr6_1:54452239-54452258 None:intergenic 35.0%
CAAGCAAGAAAACCAACTAG+AGG - chr6_1:54448763-54448782 Msa0888900:CDS 40.0%
TACTGTTTCATGCATCAAGG+AGG + chr6_1:54448804-54448823 None:intergenic 40.0%
! AGGTACTGTTTCATGCATCA+AGG + chr6_1:54448807-54448826 None:intergenic 40.0%
GGAGTCACATTTGAAGAAGT+TGG - chr6_1:54449044-54449063 Msa0888900:intron 40.0%
GTCACATTTGAAGAAGTTGG+TGG - chr6_1:54449047-54449066 Msa0888900:intron 40.0%
!! AGAAGTTGGTGGAAGTTGTA+TGG - chr6_1:54449058-54449077 Msa0888900:intron 40.0%
TGGAAGTTGTATGGCCAAAA+TGG - chr6_1:54449067-54449086 Msa0888900:intron 40.0%
! CTTCTTATAAGGCACCTATG+TGG - chr6_1:54449141-54449160 Msa0888900:intron 40.0%
CTTAATACTGCAGTGTCAGA+AGG - chr6_1:54449185-54449204 Msa0888900:intron 40.0%
GGCTATTCGTTACACATTCA+GGG + chr6_1:54449381-54449400 None:intergenic 40.0%
TGGCTATTCGTTACACATTC+AGG + chr6_1:54449382-54449401 None:intergenic 40.0%
GATACAATGAGGGACTATTG+TGG + chr6_1:54449402-54449421 None:intergenic 40.0%
TGACTACTCCTTACACATTC+AGG - chr6_1:54449691-54449710 Msa0888900:intron 40.0%
GATTTGAACTCTGTCTCTTG+AGG - chr6_1:54449817-54449836 Msa0888900:intron 40.0%
CTGTCTCTTGAGGTTACAAA+AGG - chr6_1:54449827-54449846 Msa0888900:intron 40.0%
! TGTCATTTGAAGTGGCAAAG+AGG + chr6_1:54450044-54450063 None:intergenic 40.0%
! TCTTTGCCACTTCAAATGAC+AGG - chr6_1:54450043-54450062 Msa0888900:intron 40.0%
! ATGGAACCTGTCATTTGAAG+TGG + chr6_1:54450052-54450071 None:intergenic 40.0%
CCTATTGCATAAGTTGCTTC+TGG + chr6_1:54450100-54450119 None:intergenic 40.0%
CCAGAAGCAACTTATGCAAT+AGG - chr6_1:54450097-54450116 Msa0888900:intron 40.0%
TGATTATCTGTTCCCCAACT+TGG + chr6_1:54450250-54450269 None:intergenic 40.0%
GCAGAAGATAGTGAAGATAG+TGG - chr6_1:54450280-54450299 Msa0888900:CDS 40.0%
! AGATAGTGAAGATAGTGGTG+AGG - chr6_1:54450285-54450304 Msa0888900:CDS 40.0%
! TGAAGATAGTGGTGAGGAAA+TGG - chr6_1:54450291-54450310 Msa0888900:CDS 40.0%
TCAATGAGTGTAAAGCTTCG+AGG + chr6_1:54450367-54450386 None:intergenic 40.0%
GAAGCTTTACACTCATTGAC+AGG - chr6_1:54450368-54450387 Msa0888900:intron 40.0%
AGTCCACAAGATGTATGGAA+AGG - chr6_1:54450838-54450857 Msa0888900:CDS 40.0%
!! CAATTTTGGGAAACCCACAT+TGG + chr6_1:54451200-54451219 None:intergenic 40.0%
ATGTGGGTTTCCCAAAATTG+CGG - chr6_1:54451200-54451219 Msa0888900:intron 40.0%
! CAAGGAGTTACCGCAATTTT+GGG + chr6_1:54451213-54451232 None:intergenic 40.0%
! TCAAGGAGTTACCGCAATTT+TGG + chr6_1:54451214-54451233 None:intergenic 40.0%
CTGTGAGTTTGGCATAATCA+AGG + chr6_1:54451231-54451250 None:intergenic 40.0%
ATCTGGATTCACTGTGAGTT+TGG + chr6_1:54451242-54451261 None:intergenic 40.0%
GTTGAGCCAAATTAAAGGTG+TGG - chr6_1:54451615-54451634 Msa0888900:intron 40.0%
CAATGGCCACACCTTTAATT+TGG + chr6_1:54451624-54451643 None:intergenic 40.0%
! TTTTCAGCGCGAACAATTTG+TGG - chr6_1:54451700-54451719 Msa0888900:CDS 40.0%
GATTTGCACCAATAGAGAAG+TGG - chr6_1:54451874-54451893 Msa0888900:CDS 40.0%
! TAGGTATTTGGGTTTAGTGG+TGG + chr6_1:54451995-54452014 None:intergenic 40.0%
! AGGTAGGTATTTGGGTTTAG+TGG + chr6_1:54451998-54452017 None:intergenic 40.0%
GTGGAAACTACACAAGAAAG+AGG - chr6_1:54452099-54452118 Msa0888900:CDS 40.0%
! CAATCCACTTGGTAGCAACA+TGG + chr6_1:54449117-54449136 None:intergenic 45.0%
! TATAAGGCACCTATGTGGCA+TGG - chr6_1:54449146-54449165 Msa0888900:intron 45.0%
! ACTTTTCCACCATGCCACAT+AGG + chr6_1:54449158-54449177 None:intergenic 45.0%
GCAGTGTCAGAAGGAGAATT+TGG - chr6_1:54449194-54449213 Msa0888900:intron 45.0%
GGTGATGCTGTTATTCAAGG+AGG - chr6_1:54449215-54449234 Msa0888900:intron 45.0%
TTCTCCTCTTCGCTCGTATT+CGG + chr6_1:54450184-54450203 None:intergenic 45.0%
AATACGAGCGAAGAGGAGAA+AGG - chr6_1:54450184-54450203 Msa0888900:intron 45.0%
AGCGAAGAGGAGAAAGGATT+TGG - chr6_1:54450190-54450209 Msa0888900:intron 45.0%
AACGCTGTCTCACACATCTA+GGG - chr6_1:54450625-54450644 Msa0888900:intron 45.0%
GAAACATACCTGTTCAGTCC+AGG - chr6_1:54450736-54450755 Msa0888900:CDS 45.0%
CTTTCAATTCCTGATGAGCC+TGG + chr6_1:54450757-54450776 None:intergenic 45.0%
CCTCCTTTCCATACATCTTG+TGG + chr6_1:54450844-54450863 None:intergenic 45.0%
CCACAAGATGTATGGAAAGG+AGG - chr6_1:54450841-54450860 Msa0888900:CDS 45.0%
ACTTAGAGACCACTCCAATG+TGG - chr6_1:54451183-54451202 Msa0888900:intron 45.0%
CTTAGAGACCACTCCAATGT+GGG - chr6_1:54451184-54451203 Msa0888900:intron 45.0%
! ACCAAGCGCAGATTTGTTTG+CGG + chr6_1:54451667-54451686 None:intergenic 45.0%
AGTTTCCACACTGTGCATGA+TGG + chr6_1:54452088-54452107 None:intergenic 45.0%
GCTACCATGTTGCTACCAAG+TGG - chr6_1:54449110-54449129 Msa0888900:intron 50.0%
TAGCCGACCGCCTATTGAAT+CGG - chr6_1:54450141-54450160 Msa0888900:intron 50.0%
ACTCCGATTCAATAGGCGGT+CGG + chr6_1:54450147-54450166 None:intergenic 50.0%
ATAACGGCACTCACGCATCT+AGG - chr6_1:54450514-54450533 Msa0888900:intron 50.0%
TAACGGCACTCACGCATCTA+GGG - chr6_1:54450515-54450534 Msa0888900:intron 50.0%
CAACGCTGTCTCACACATCT+AGG - chr6_1:54450624-54450643 Msa0888900:intron 50.0%
TTGGGAAACCCACATTGGAG+TGG + chr6_1:54451195-54451214 None:intergenic 50.0%
TCCGCAAACAAATCTGCGCT+TGG - chr6_1:54451663-54451682 Msa0888900:intron 50.0%
!! CTGCGCTTGGTCTTTTGAAG+TGG - chr6_1:54451676-54451695 Msa0888900:CDS 50.0%
AGTGGTGGTTGTCCTCTAAC+CGG + chr6_1:54451980-54451999 None:intergenic 50.0%
TACCTCCATCATGCACAGTG+TGG - chr6_1:54452080-54452099 Msa0888900:CDS 50.0%
TTCCACACTGTGCATGATGG+AGG + chr6_1:54452085-54452104 None:intergenic 50.0%
! AAGGCACCTATGTGGCATGG+TGG - chr6_1:54449149-54449168 Msa0888900:intron 55.0%
TCCTCCGAATACGAGCGAAG+AGG - chr6_1:54450177-54450196 Msa0888900:intron 55.0%
TCCTCTTCGCTCGTATTCGG+AGG + chr6_1:54450181-54450200 None:intergenic 55.0%
CTGATGAGCCTGGACTGAAC+AGG + chr6_1:54450747-54450766 None:intergenic 55.0%
CTGTTCAGTCCAGGCTCATC+AGG - chr6_1:54450745-54450764 Msa0888900:CDS 55.0%
GTGGTGGTTGTCCTCTAACC+GGG + chr6_1:54451979-54451998 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 54448720 54452304 54448720 ID=Msa0888900;Name=Msa0888900
chr6_1 mRNA 54448720 54452304 54448720 ID=Msa0888900-mRNA-1;Parent=Msa0888900;Name=Msa0888900-mRNA-1;_AED=0.20;_eAED=0.20;_QI=123|0.66|0.5|0.75|1|1|4|0|401
chr6_1 exon 54448720 54448870 54448720 ID=Msa0888900-mRNA-1:exon:10968;Parent=Msa0888900-mRNA-1
chr6_1 exon 54450239 54450330 54450239 ID=Msa0888900-mRNA-1:exon:10967;Parent=Msa0888900-mRNA-1
chr6_1 exon 54450634 54451086 54450634 ID=Msa0888900-mRNA-1:exon:10966;Parent=Msa0888900-mRNA-1
chr6_1 exon 54451672 54452304 54451672 ID=Msa0888900-mRNA-1:exon:10965;Parent=Msa0888900-mRNA-1
chr6_1 five_prime_UTR 54452182 54452304 54452182 ID=Msa0888900-mRNA-1:five_prime_utr;Parent=Msa0888900-mRNA-1
chr6_1 CDS 54451672 54452181 54451672 ID=Msa0888900-mRNA-1:cds;Parent=Msa0888900-mRNA-1
chr6_1 CDS 54450634 54451086 54450634 ID=Msa0888900-mRNA-1:cds;Parent=Msa0888900-mRNA-1
chr6_1 CDS 54450239 54450330 54450239 ID=Msa0888900-mRNA-1:cds;Parent=Msa0888900-mRNA-1
chr6_1 CDS 54448720 54448870 54448720 ID=Msa0888900-mRNA-1:cds;Parent=Msa0888900-mRNA-1
Gene Sequence

>Msa0888900

ATGGCTTCAACTTCACTTATTTGCTCCAATATTTTCATACCAAAATCTACTAGAAACACACCATCATCACATATTTGTTTACCATTTTCTAGCTATATTCAACAAAACCAATACAAGAGAGAGTTTACACTCCCAAAAGTAGCTTCAGTACCTTACCAACCAATCAACTATGACTACTTAGAACAAGAATTCAATGGACATGGAGTCACATTTGAAGAAGTTGGTGGAAGTTGTATGGCCAAAATGGAATTGAAAAATGGAAGCATTGCTACCATGTTGCTACCAAGTGGATTGATTACTTCTTATAAGGCACCTATGTGGCATGGTGGAAAAGTTGAGTTGCTTAATACTGCAGTGTCAGAAGGAGAATTTGGTGATGCTGTTATTCAAGGAGGAGTTTCTTTAAACTTCAATTTTCAAACTCATGATGAAAATGATGATGAAGTTTCATGGTCTCCTTCTAATTGGGTTTTGCATAATATTAAAGGCAATTCTGAGGAATCTATTCAGGTAGTATTAATAAACAAAGGACCATATGACAAGATTGGATTAAAATACATTGTGACATTGGAAGAAGATGGATTAGGCTCAGAGCTTGAAATCTCAAACTCAACCTCTTTGCCACTTCAAATGACAGGTTCCATCCTTAGTCATTTGACAGTAAGCACACCAGAAGCAACTTATGCAATAGGATTAGAGAGATCAAATTACTATAGCCGACCGCCTATTGAATCGGAGTTTATTTTGAGTCCTCCGAATACGAGCGAAGAGGAGAAAGGATTTGGAAATATATGGAAATCATCTGTTAAGCAATTTTTGCCAAGTTGGGGAACAGATAATCAGAACAATGAAGCAGAAGATAGTGAAGATAGTGGTGAGGAAATGGATACCTACAAACAGTTAAAAGAGAGAGTAAGTCTTGTATACACGAATGCGCCTCGAAGCTTTACACTCATTGACAGGGGTAGAAGAAACTCAGTATTAGTTGGAAGAAATGGATTTGATGAAACATACCTGTTCAGTCCAGGCTCATCAGGAATTGAAAGTTACAGCAAACAATCTTGGTTTCGAGAAATTAAGGATATTGAAAGAGGAGATCAACCACCCAAGAAAGAATCAAATGAAGTGATTTCAATTCCTCTTGATAGTGAAGATGATGAACATAAGAATTTAAAGAAGATGAAAATGAAGAAGCAATTTCACTAG

Protein sequence

>Msa0888900

MASTSLICSNIFIPKSTRNTPSSHICLPFSSYIQQNQYKREFTLPKVASVPYQPINYDYLEQEFNGHGVTFEEVGGSCMAKMELKNGSIATMLLPSGLITSYKAPMWHGGKVELLNTAVSEGEFGDAVIQGGVSLNFNFQTHDENDDEVSWSPSNWVLHNIKGNSEESIQVVLINKGPYDKIGLKYIVTLEEDGLGSELEISNSTSLPLQMTGSILSHLTVSTPEATYAIGLERSNYYSRPPIESEFILSPPNTSEEEKGFGNIWKSSVKQFLPSWGTDNQNNEAEDSEDSGEEMDTYKQLKERVSLVYTNAPRSFTLIDRGRRNSVLVGRNGFDETYLFSPGSSGIESYSKQSWFREIKDIERGDQPPKKESNEVISIPLDSEDDEHKNLKKMKMKKQFH*