AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0936650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0936650 MtrunA17_Chr6g0452771 84.438 347 19 3 1 312 1 347 0.0 556
Msa0936650 MtrunA17_Chr6g0454261 72.622 347 60 3 1 312 1 347 7.87e-179 503
Msa0936650 MtrunA17_Chr6g0454141 73.199 347 58 3 1 312 1 347 3.18e-178 501
Msa0936650 MtrunA17_Chr6g0453961 70.115 348 68 3 1 312 10 357 6.52e-173 488
Msa0936650 MtrunA17_Chr6g0454151 70.317 347 66 4 1 312 1 345 5.46e-162 460
Msa0936650 MtrunA17_Chr6g0454191 68.678 348 73 3 1 312 1 348 9.25e-162 459
Msa0936650 MtrunA17_Chr6g0454181 66.571 347 81 3 1 312 1 347 4.26e-160 455
Msa0936650 MtrunA17_Chr6g0454401 66.379 348 81 3 1 312 1 348 6.47e-158 450
Msa0936650 MtrunA17_Chr7g0217881 69.301 329 84 2 1 312 1 329 5.32e-154 439
Msa0936650 MtrunA17_Chr5g0423981 68.389 329 70 5 1 312 1 312 1.50e-153 437
Msa0936650 MtrunA17_Chr8g0359821 65.507 345 86 3 1 312 1 345 1.63e-153 438
Msa0936650 MtrunA17_Chr6g0454131 68.876 347 72 4 1 312 1 346 5.55e-153 437
Msa0936650 MtrunA17_Chr6g0454361 67.241 348 78 4 1 312 1 348 5.92e-152 434
Msa0936650 MtrunA17_Chr6g0453951 64.655 348 87 4 1 312 47 394 5.98e-152 436
Msa0936650 MtrunA17_Chr6g0454121 67.147 347 78 4 1 312 1 346 6.31e-151 432
Msa0936650 MtrunA17_Chr6g0454331 62.428 346 93 3 4 312 1 346 8.48e-151 432
Msa0936650 MtrunA17_Chr6g0454251 61.047 344 99 3 4 312 1 344 5.35e-149 424
Msa0936650 MtrunA17_Chr6g0454351 61.891 349 79 5 1 312 1 332 1.03e-144 416
Msa0936650 MtrunA17_Chr6g0454201 65.805 348 83 4 1 312 1 348 5.98e-144 414
Msa0936650 MtrunA17_Chr6g0454341 61.207 348 96 5 1 312 1 345 2.62e-141 407
Msa0936650 MtrunA17_Chr6g0454291 63.663 344 90 3 4 312 1 344 7.88e-141 406
Msa0936650 MtrunA17_Chr3g0078841 61.207 348 96 5 1 312 1 345 8.49e-141 406
Msa0936650 MtrunA17_Chr6g0454211 63.584 346 91 3 2 312 289 634 1.04e-139 413
Msa0936650 MtrunA17_Chr6g0454211 63.426 216 42 3 117 311 1 200 2.39e-79 256
Msa0936650 MtrunA17_Chr8g0336331 60.519 347 99 5 1 312 1 344 5.64e-139 401
Msa0936650 MtrunA17_Chr6g0454301 61.207 348 96 5 1 312 254 598 9.37e-139 409
Msa0936650 MtrunA17_Chr6g0454301 77.320 97 19 1 219 312 1 97 1.89e-42 155
Msa0936650 MtrunA17_Chr6g0454321 60.345 348 99 5 1 312 1 345 5.33e-135 397
Msa0936650 MtrunA17_Chr6g0454321 62.400 125 33 1 2 112 496 620 1.86e-44 160
Msa0936650 MtrunA17_Chr3g0092641 49.706 340 134 6 5 310 7 343 1.39e-105 316
Msa0936650 MtrunA17_Chr5g0426431 49.128 344 134 7 3 310 5 343 7.93e-103 309
Msa0936650 MtrunA17_Chr2g0278711 47.493 339 136 4 7 310 8 339 3.37e-98 297
Msa0936650 MtrunA17_Chr6g0453941 54.799 323 82 10 1 312 1 270 1.52e-96 286
Msa0936650 MtrunA17_Chr6g0453981 63.594 217 58 2 117 312 1 217 2.92e-91 271
Msa0936650 MtrunA17_Chr8g0336271 53.846 247 80 3 1 216 1 244 2.17e-84 255
Msa0936650 MtrunA17_Chr4g0050341 43.440 343 154 7 8 312 17 357 1.96e-82 257
Msa0936650 MtrunA17_Chr3g0118751 41.493 335 158 5 7 306 3 334 3.85e-81 253
Msa0936650 MtrunA17_Chr3g0118671 41.543 337 159 5 7 308 3 336 6.83e-81 253
Msa0936650 MtrunA17_Chr3g0118771 41.018 334 159 5 7 305 18 348 6.78e-79 248
Msa0936650 MtrunA17_Chr3g0118711 40.476 336 162 5 5 305 8 340 2.59e-78 246
Msa0936650 MtrunA17_Chr3g0118661 40.533 338 169 4 7 312 10 347 1.09e-77 244
Msa0936650 MtrunA17_Chr3g0118691 39.528 339 167 6 2 305 7 342 1.65e-77 244
Msa0936650 MtrunA17_Chr6g0454281 65.517 174 46 1 1 160 1 174 2.63e-77 235
Msa0936650 MtrunA17_Chr6g0454231 54.167 240 75 3 1 208 241 477 1.31e-76 242
Msa0936650 MtrunA17_Chr6g0454231 59.770 87 29 2 195 278 3 86 1.99e-22 97.1
Msa0936650 MtrunA17_Chr3g0118701 38.938 339 169 5 2 305 7 342 2.26e-76 241
Msa0936650 MtrunA17_Chr6g0454171 63.054 203 42 4 117 312 1 177 2.76e-73 228
Msa0936650 MtrunA17_Chr6g0454111 74.667 150 29 2 154 294 33 182 7.95e-73 222
Msa0936650 MtrunA17_Chr6g0454271 69.481 154 44 1 162 312 1 154 9.50e-73 226
Msa0936650 MtrunA17_Chr8g0355011 46.218 238 70 4 93 312 32 229 9.27e-57 187
Msa0936650 MtrunA17_Chr5g0426401 55.195 154 64 2 162 310 23 176 2.73e-49 166
Msa0936650 MtrunA17_Chr5g0412111 32.308 325 184 8 9 303 4 322 4.65e-46 162
Msa0936650 MtrunA17_Chr5g0412131 32.727 330 183 8 6 303 8 330 1.24e-44 158
Msa0936650 MtrunA17_Chr3g0112771 34.286 315 168 9 12 305 14 310 3.39e-44 156
Msa0936650 MtrunA17_Chr5g0412101 31.515 330 188 7 6 303 8 331 1.79e-43 155
Msa0936650 MtrunA17_Chr5g0426411 46.286 175 76 5 1 160 1 172 2.19e-43 147
Msa0936650 MtrunA17_Chr6g0454381 54.225 142 44 2 117 237 1 142 1.07e-42 144
Msa0936650 MtrunA17_Chr6g0454221 78.571 98 17 2 219 312 1 98 1.08e-42 149
Msa0936650 MtrunA17_Chr3g0112761 34.921 315 167 10 12 305 10 307 1.42e-42 152
Msa0936650 MtrunA17_Chr3g0118721 44.966 149 77 2 162 305 1 149 3.27e-38 137
Msa0936650 MtrunA17_Chr7g0249981 31.090 312 183 9 8 299 23 322 1.45e-36 136
Msa0936650 MtrunA17_Chr7g0218831 29.870 308 185 8 9 300 5 297 3.25e-35 132
Msa0936650 MtrunA17_Chr7g0218811 31.169 308 182 8 9 300 14 307 1.46e-34 130
Msa0936650 MtrunA17_Chr7g0218821 29.206 315 190 7 9 300 4 308 4.71e-34 129
Msa0936650 MtrunA17_Chr7g0218841 30.421 309 183 10 9 300 5 298 5.90e-34 129
Msa0936650 MtrunA17_Chr4g0032331 30.793 328 179 10 12 312 10 316 1.60e-33 127
Msa0936650 MtrunA17_Chr6g0464881 29.430 316 183 9 9 299 10 310 1.17e-31 122
Msa0936650 MtrunA17_Chr1g0207981 27.300 337 204 11 6 311 9 335 2.87e-31 122
Msa0936650 MtrunA17_Chr5g0414331 29.808 312 181 11 10 299 13 308 6.30e-31 120
Msa0936650 MtrunA17_Chr5g0414321 29.712 313 180 12 10 299 11 306 7.53e-31 120
Msa0936650 MtrunA17_Chr1g0161351 27.796 313 200 7 10 300 37 345 2.00e-30 120
Msa0936650 MtrunA17_Chr5g0431441 29.936 314 186 10 10 299 18 321 7.96e-30 117
Msa0936650 MtrunA17_Chr1g0207861 28.391 317 203 8 5 300 3 316 1.68e-29 117
Msa0936650 MtrunA17_Chr6g0464871 30.063 316 179 10 10 299 23 322 4.22e-28 113
Msa0936650 MtrunA17_Chr5g0401721 27.329 322 208 12 5 302 3 322 4.42e-28 113
Msa0936650 MtrunA17_Chr4g0053501 24.127 315 209 8 6 300 7 311 5.83e-28 113
Msa0936650 MtrunA17_Chr6g0464921 28.261 322 196 11 1 299 1 310 1.19e-27 111
Msa0936650 MtrunA17_Chr5g0393591 28.896 308 180 8 10 300 17 302 3.66e-27 110
Msa0936650 MtrunA17_Chr3g0098111 26.074 326 189 8 10 300 9 317 1.37e-26 108
Msa0936650 MtrunA17_Chr7g0250001 26.667 315 199 9 6 300 2 304 3.35e-26 107
Msa0936650 MtrunA17_Chr8g0380531 28.155 309 193 8 10 298 10 309 7.33e-26 106
Msa0936650 MtrunA17_Chr7g0218791 26.667 315 197 12 9 301 4 306 9.13e-26 106
Msa0936650 MtrunA17_Chr6g0464841 29.503 322 173 13 10 299 11 310 1.34e-25 105
Msa0936650 MtrunA17_Chr1g0207931 27.152 302 161 7 10 300 92 345 2.39e-25 105
Msa0936650 MtrunA17_Chr1g0207951 26.480 321 189 9 10 299 124 428 4.52e-25 105
Msa0936650 MtrunA17_Chr1g0207951 29.126 309 189 9 12 296 658 960 2.73e-24 103
Msa0936650 MtrunA17_Chr8g0365811 25.949 316 210 8 4 299 489 800 4.63e-25 105
Msa0936650 MtrunA17_Chr8g0365811 26.837 313 199 9 12 299 11 318 5.76e-24 102
Msa0936650 MtrunA17_Chr1g0207971 26.490 302 205 7 10 296 8 307 9.91e-25 103
Msa0936650 MtrunA17_Chr4g0053321 25.938 320 201 11 5 300 19 326 1.01e-24 103
Msa0936650 MtrunA17_Chr6g0464861 28.086 324 176 13 9 299 10 309 7.87e-24 100
Msa0936650 MtrunA17_Chr8g0377921 28.528 326 184 12 9 299 2 313 1.54e-23 100
Msa0936650 MtrunA17_Chr7g0250021 26.433 314 192 9 10 299 12 310 1.82e-23 98.2
Msa0936650 MtrunA17_Chr5g0431401 28.477 302 191 8 10 297 10 300 1.85e-23 99.8
Msa0936650 MtrunA17_Chr1g0207831 27.829 327 172 11 12 296 10 314 4.89e-23 99.0
Msa0936650 MtrunA17_Chr5g0431371 28.618 304 188 9 10 297 10 300 1.26e-22 97.4
Msa0936650 MtrunA17_Chr7g0249931 25.155 322 198 10 4 299 34 338 5.25e-22 95.9
Msa0936650 MtrunA17_Chr7g0243951 24.534 322 217 7 2 299 3 322 1.89e-21 94.4
Msa0936650 MtrunA17_Chr7g0243861 25.826 333 205 14 1 301 5 327 4.02e-21 93.6
Msa0936650 MtrunA17_Chr3g0106231 27.362 307 193 11 10 301 18 309 4.09e-21 93.2
Msa0936650 MtrunA17_Chr5g0448551 24.606 317 202 9 7 299 4 307 4.43e-21 93.2
Msa0936650 MtrunA17_Chr5g0431421 27.632 304 195 8 10 299 10 302 5.44e-21 92.8
Msa0936650 MtrunA17_Chr5g0431361 25.879 313 192 8 10 299 12 307 8.41e-21 92.4
Msa0936650 MtrunA17_Chr7g0243681 25.387 323 191 13 10 299 11 316 1.37e-20 92.0
Msa0936650 MtrunA17_Chr7g0243631 25.000 324 196 12 10 299 13 323 1.64e-20 91.7
Msa0936650 MtrunA17_Chr4g0011051 25.466 322 206 11 8 299 7 324 7.00e-20 89.7
Msa0936650 MtrunA17_Chr7g0243931 26.606 327 208 10 2 301 9 330 2.16e-19 88.2
Msa0936650 MtrunA17_Chr3g0118741 61.404 57 22 0 7 63 3 59 2.39e-19 80.9
Msa0936650 MtrunA17_Chr7g0275681 28.797 316 194 14 9 299 11 320 3.94e-19 87.4
Msa0936650 MtrunA17_Chr7g0265041 24.606 317 216 8 9 302 10 326 9.59e-18 83.6
Msa0936650 MtrunA17_Chr3g0122001 24.224 322 211 7 10 304 486 801 1.23e-17 83.6
Msa0936650 MtrunA17_Chr7g0243771 23.676 321 201 10 10 299 6 313 2.58e-17 82.0
Msa0936650 MtrunA17_Chr7g0232391 29.703 202 128 5 107 299 108 304 4.12e-17 81.6
Msa0936650 MtrunA17_Chr7g0232401 23.003 313 205 6 10 299 6 305 5.92e-17 81.3
Msa0936650 MtrunA17_Chr4g0044511 24.759 311 207 11 10 299 40 344 5.96e-17 81.3
Msa0936650 MtrunA17_Chr2g0329111 26.087 322 200 12 7 300 3 314 6.94e-17 80.9
Msa0936650 MtrunA17_Chr5g0401851 25.076 331 211 10 1 301 1 324 7.41e-17 80.9
Msa0936650 MtrunA17_Chr4g0060511 24.478 335 208 13 2 301 3 327 8.06e-17 80.9
Msa0936650 MtrunA17_Chr7g0243761 24.625 333 190 12 10 301 11 323 8.39e-17 80.5
Msa0936650 MtrunA17_Chr3g0121991 25.938 320 198 11 10 299 79 389 9.03e-17 80.9
Msa0936650 MtrunA17_Chr8g0347281 26.866 201 128 4 108 299 119 309 9.19e-17 80.5
Msa0936650 MtrunA17_Chr7g0243781 24.606 317 202 11 15 306 14 318 9.80e-17 80.5
Msa0936650 MtrunA17_Chr5g0440421 24.855 346 200 10 1 300 1 332 1.01e-16 80.5
Msa0936650 MtrunA17_Chr6g0462521 29.630 189 113 4 122 302 124 300 1.23e-16 80.1
Msa0936650 MtrunA17_Chr7g0243801 24.845 322 186 11 15 299 12 314 1.29e-16 80.1
Msa0936650 MtrunA17_Chr7g0265101 25.301 332 194 14 8 299 7 324 1.46e-16 80.1
Msa0936650 MtrunA17_Chr7g0235051 24.841 314 183 13 10 301 11 293 2.56e-16 79.3
Msa0936650 MtrunA17_Chr7g0265051 24.012 329 200 12 8 299 7 322 2.92e-16 79.0
Msa0936650 MtrunA17_Chr5g0419761 23.171 328 208 10 4 298 3 319 3.79e-16 78.6
Msa0936650 MtrunA17_Chr5g0428081 24.752 303 202 10 15 298 16 311 9.76e-16 77.4
Msa0936650 MtrunA17_Chr7g0232331 28.079 203 130 7 107 299 108 304 1.66e-15 76.6
Msa0936650 MtrunA17_Chr8g0366391 25.460 326 196 13 10 299 9 323 1.73e-15 76.6
Msa0936650 MtrunA17_Chr5g0416741 22.492 329 198 10 12 301 15 325 2.41e-15 76.3
Msa0936650 MtrunA17_Chr6g0463891 25.786 318 200 11 11 299 13 323 2.76e-15 76.3
Msa0936650 MtrunA17_Chr1g0159551 24.038 312 200 14 5 299 9 300 4.54e-15 75.5
Msa0936650 MtrunA17_Chr7g0232311 37.226 137 73 5 165 299 175 300 6.41e-15 75.1
Msa0936650 MtrunA17_Chr1g0207881 26.119 268 170 7 10 265 8 259 9.41e-15 74.3
Msa0936650 MtrunA17_Chr7g0232341 24.500 200 141 2 107 299 108 304 1.42e-14 73.9
Msa0936650 MtrunA17_Chr8g0373301 28.230 209 121 7 107 299 111 306 2.73e-14 73.2
Msa0936650 MtrunA17_Chr7g0243871 24.390 328 190 12 7 299 6 310 3.11e-14 72.8
Msa0936650 MtrunA17_Chr8g0336691 25.157 318 206 10 2 299 5 310 4.41e-14 73.2
Msa0936650 MtrunA17_Chr8g0336691 25.616 203 134 4 107 299 1021 1216 1.67e-12 68.2
Msa0936650 MtrunA17_Chr7g0265141 25.714 315 209 7 8 298 7 320 4.75e-14 72.4
Msa0936650 MtrunA17_Chr4g0072761 25.328 229 144 5 83 301 101 312 4.86e-14 72.4
Msa0936650 MtrunA17_Chr2g0294921 23.607 305 205 10 15 298 165 462 5.12e-14 72.4
Msa0936650 MtrunA17_Chr7g0232411 27.273 209 124 6 107 299 108 304 5.93e-14 72.0
Msa0936650 MtrunA17_Chr7g0265151 24.242 330 191 13 10 299 9 319 6.12e-14 72.0
Msa0936650 MtrunA17_Chr8g0361371 23.148 324 195 12 6 299 3 302 6.77e-14 72.0
Msa0936650 MtrunA17_Chr6g0462531 26.396 197 118 4 122 302 129 314 7.41e-14 71.6
Msa0936650 MtrunA17_Chr8g0336261 81.579 38 7 0 275 312 1 38 7.50e-14 67.8
Msa0936650 MtrunA17_Chr8g0347271 25.871 201 130 4 108 299 120 310 8.16e-14 71.6
Msa0936650 MtrunA17_Chr5g0419771 22.981 322 206 9 10 299 36 347 8.82e-14 71.6
Msa0936650 MtrunA17_Chr8g0377941 28.165 316 191 10 12 299 9 316 1.02e-13 71.2
Msa0936650 MtrunA17_Chr2g0294931 23.920 301 209 9 15 298 16 313 1.26e-13 71.2
Msa0936650 MtrunA17_Chr4g0044481 25.817 306 190 10 10 299 27 311 1.41e-13 70.9
Msa0936650 MtrunA17_Chr8g0334851 25.592 211 126 7 108 300 112 309 1.93e-13 70.5
Msa0936650 MtrunA17_Chr8g0374931 23.127 307 204 11 15 298 16 313 2.39e-13 70.5
Msa0936650 MtrunA17_Chr6g0449931 25.387 323 193 14 6 300 2 304 2.81e-13 70.1
Msa0936650 MtrunA17_Chr5g0420801 26.562 320 200 13 1 299 1 306 2.84e-13 70.1
Msa0936650 MtrunA17_Chr6g0462571 24.873 197 121 3 122 302 126 311 3.24e-13 69.7
Msa0936650 MtrunA17_Chr8g0335161 33.088 136 81 4 165 299 178 304 3.36e-13 69.7
Msa0936650 MtrunA17_Chr6g0462541 25.381 197 117 4 122 301 129 312 3.56e-13 69.7
Msa0936650 MtrunA17_Chr8g0336741 27.094 203 131 5 107 299 115 310 3.93e-13 69.7
Msa0936650 MtrunA17_Chr7g0243611 28.495 186 122 4 118 299 4 182 4.29e-13 68.6
Msa0936650 MtrunA17_Chr8g0334831 23.197 319 201 12 6 299 2 301 8.34e-13 68.6
Msa0936650 MtrunA17_Chr7g0218311 23.510 302 206 9 15 298 21 315 9.15e-13 68.6
Msa0936650 MtrunA17_Chr6g0459311 35.714 112 59 4 192 299 207 309 1.33e-12 68.2
Msa0936650 MtrunA17_Chr4g0014061 23.948 309 201 12 13 298 12 309 2.28e-12 67.4
Msa0936650 MtrunA17_Chr7g0267931 71.053 38 10 1 14 50 24 61 2.68e-12 61.2
Msa0936650 MtrunA17_Chr4g0066201 24.919 309 185 11 15 298 23 309 7.22e-12 65.9
Msa0936650 MtrunA17_Chr8g0334841 29.630 135 80 4 169 299 11 134 9.65e-12 62.8
Msa0936650 MtrunA17_Chr6g0462551 22.910 323 201 9 12 301 6 313 9.97e-12 65.5
Msa0936650 MtrunA17_Chr6g0486251 30.935 139 79 5 165 299 177 302 1.18e-11 65.1
Msa0936650 MtrunA17_Chr6g0486201 30.935 139 79 5 165 299 177 302 1.18e-11 65.1
Msa0936650 MtrunA17_Chr8g0339631 26.066 211 125 6 107 299 109 306 1.91e-11 64.7
Msa0936650 MtrunA17_Chr7g0243811 23.948 309 181 12 22 299 1 286 1.98e-11 64.3
Msa0936650 MtrunA17_Chr1g0173121 23.750 320 198 11 3 299 7 303 2.07e-11 64.3
Msa0936650 MtrunA17_Chr8g0334861 35.849 106 54 3 199 299 204 300 2.07e-11 64.3
Msa0936650 MtrunA17_Chr6g0454371 73.684 38 10 0 275 312 1 38 4.12e-11 60.8
Msa0936650 MtrunA17_Chr8g0335141 34.711 121 66 5 192 307 203 315 5.91e-11 63.2
Msa0936650 MtrunA17_Chr6g0463861 24.830 294 206 10 15 298 16 304 6.65e-11 62.8
Msa0936650 MtrunA17_Chr4g0066151 22.684 313 188 10 15 298 23 310 7.81e-11 62.8
Msa0936650 MtrunA17_Chr7g0232351 30.435 138 76 4 169 299 179 303 8.43e-11 62.4
Msa0936650 MtrunA17_Chr5g0442601 22.769 325 202 11 7 299 401 708 8.46e-11 62.8
Msa0936650 MtrunA17_Chr7g0265111 25.392 319 204 12 10 299 39 352 8.90e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0936650 AT1G22360.2 44.152 342 159 3 1 310 1 342 6.73e-97 294
Msa0936650 AT1G22360.1 44.152 342 159 3 1 310 1 342 6.94e-97 294
Msa0936650 AT1G22370.2 45.619 331 147 5 5 305 8 335 2.13e-96 293
Msa0936650 AT1G22400.1 45.075 335 145 6 7 305 10 341 5.35e-95 290
Msa0936650 AT1G22340.1 43.695 341 150 5 7 310 10 345 7.46e-95 289
Msa0936650 AT1G22380.1 43.620 337 158 3 6 310 9 345 9.71e-94 286
Msa0936650 AT1G78270.1 41.765 340 161 4 5 310 8 344 8.08e-90 276
Msa0936650 AT1G22370.1 48.322 149 72 2 162 305 17 165 9.12e-45 155
Msa0936650 AT5G05890.1 32.812 320 175 9 10 305 8 311 2.89e-41 149
Msa0936650 AT5G59580.1 34.365 323 164 12 8 305 7 306 5.60e-40 145
Msa0936650 AT5G59590.1 33.739 329 161 13 7 305 7 308 7.38e-40 145
Msa0936650 AT3G46650.1 33.225 307 177 10 5 305 7 291 4.26e-39 143
Msa0936650 AT5G05900.1 31.288 326 177 10 10 309 8 312 2.30e-38 141
Msa0936650 AT5G05860.1 31.875 320 174 10 10 306 9 307 2.76e-38 141
Msa0936650 AT5G05870.1 30.650 323 188 9 6 305 4 313 5.47e-38 140
Msa0936650 AT3G11340.1 32.508 323 167 13 8 305 7 303 5.89e-38 140
Msa0936650 AT3G46670.1 32.915 319 171 11 10 305 9 307 2.50e-37 138
Msa0936650 AT3G02100.1 29.630 324 193 11 2 297 5 321 2.68e-37 138
Msa0936650 AT3G46680.1 31.288 326 176 11 6 305 5 308 6.44e-36 134
Msa0936650 AT5G05880.1 30.503 318 181 9 10 305 8 307 1.36e-35 134
Msa0936650 AT2G36970.1 30.702 342 182 12 1 303 1 326 1.50e-35 134
Msa0936650 AT5G38010.1 31.024 332 189 10 1 308 1 316 9.57e-35 131
Msa0936650 AT3G46660.1 30.887 327 185 10 8 311 12 320 1.65e-33 128
Msa0936650 AT3G55700.1 29.938 324 185 10 6 305 4 309 8.62e-33 126
Msa0936650 AT3G46700.1 31.288 326 179 13 8 311 7 309 1.02e-32 125
Msa0936650 AT3G46690.1 30.625 320 184 10 7 305 6 308 1.40e-32 125
Msa0936650 AT3G46720.1 31.746 315 175 12 7 300 6 301 1.61e-30 120
Msa0936650 AT2G26480.1 29.653 317 187 9 7 305 5 303 3.57e-30 119
Msa0936650 AT5G38040.1 29.582 311 181 12 19 308 19 312 8.85e-30 117
Msa0936650 AT3G55710.1 30.368 326 185 12 6 305 4 313 2.12e-29 117
Msa0936650 AT4G15490.1 26.562 320 207 9 7 302 5 320 2.60e-29 117
Msa0936650 AT4G15500.1 26.266 316 204 8 9 302 8 316 2.05e-28 114
Msa0936650 AT3G21560.1 27.187 320 197 10 9 299 11 323 3.07e-28 114
Msa0936650 AT2G28080.1 27.532 316 193 10 15 303 23 329 1.32e-27 112
Msa0936650 AT4G15480.1 26.316 323 190 10 10 300 19 325 8.68e-27 110
Msa0936650 AT4G34131.1 26.239 343 201 9 1 304 1 330 4.47e-25 105
Msa0936650 AT2G31790.1 26.899 316 197 8 7 299 5 309 4.74e-25 104
Msa0936650 AT2G23250.1 29.431 299 178 12 19 300 7 289 1.31e-24 103
Msa0936650 AT4G34135.2 28.319 339 187 12 2 299 3 326 4.94e-24 100
Msa0936650 AT2G36760.1 27.607 326 186 11 10 299 14 325 6.20e-24 102
Msa0936650 AT4G34135.1 28.319 339 187 12 2 299 3 326 1.69e-23 100
Msa0936650 AT2G43820.1 28.526 312 188 13 7 299 4 299 2.13e-23 100
Msa0936650 AT3G22250.1 23.867 331 198 7 7 298 5 320 2.51e-23 100
Msa0936650 AT2G43840.2 28.165 316 186 14 6 299 3 299 4.08e-23 99.4
Msa0936650 AT2G36800.1 28.319 339 187 14 1 299 2 324 1.45e-22 98.2
Msa0936650 AT2G43840.1 27.848 316 187 14 6 299 3 299 3.71e-22 96.7
Msa0936650 AT2G36770.1 26.300 327 189 14 10 299 14 325 5.67e-22 96.3
Msa0936650 AT1G24100.1 29.607 331 171 16 6 299 7 312 7.46e-22 95.9
Msa0936650 AT4G01070.2 26.667 315 195 8 7 299 5 305 1.73e-21 93.6
Msa0936650 AT2G30140.2 26.710 307 194 10 10 299 13 305 2.10e-21 94.4
Msa0936650 AT5G37950.1 27.632 304 184 8 25 308 1 288 2.55e-21 93.2
Msa0936650 AT2G15480.1 26.190 336 204 13 1 301 1 327 2.73e-21 94.4
Msa0936650 AT2G23260.1 25.938 320 204 11 1 300 1 307 2.88e-21 94.0
Msa0936650 AT2G15480.2 26.190 336 204 13 1 301 1 327 3.15e-21 94.0
Msa0936650 AT2G30140.1 26.623 308 194 9 10 299 13 306 6.29e-21 93.2
Msa0936650 AT2G31750.1 25.962 312 205 11 6 299 4 307 6.96e-21 92.8
Msa0936650 AT4G01070.1 26.667 315 195 8 7 299 5 305 7.38e-21 92.8
Msa0936650 AT2G31750.2 25.962 312 205 11 6 299 4 307 1.13e-20 92.4
Msa0936650 AT5G37950.2 27.667 300 183 8 25 308 1 282 1.40e-20 90.9
Msa0936650 AT1G05675.1 25.641 312 200 10 10 299 6 307 4.86e-20 90.5
Msa0936650 AT1G05560.1 26.230 305 196 9 9 298 4 294 8.77e-20 89.7
Msa0936650 AT1G05560.2 26.230 305 196 9 9 298 54 344 1.01e-19 89.7
Msa0936650 AT4G15550.1 24.841 314 201 9 9 298 12 314 1.40e-19 89.4
Msa0936650 AT2G36750.1 25.994 327 189 11 10 299 10 320 1.83e-19 89.0
Msa0936650 AT2G36780.1 25.532 329 189 13 10 299 14 325 4.26e-19 87.8
Msa0936650 AT1G05680.1 25.633 316 203 11 6 299 2 307 4.41e-19 87.8
Msa0936650 AT2G15490.3 26.727 333 190 13 6 298 3 321 2.60e-18 85.5
Msa0936650 AT2G15490.1 26.727 333 190 13 6 298 3 321 2.78e-18 85.5
Msa0936650 AT3G53160.1 23.676 321 205 11 10 299 8 319 7.40e-18 84.3
Msa0936650 AT2G36790.1 27.439 328 184 11 10 299 13 324 1.98e-17 82.8
Msa0936650 AT4G34138.1 26.444 329 191 12 8 298 9 324 2.16e-17 82.8
Msa0936650 AT4G14090.1 26.115 314 202 11 3 299 6 306 1.11e-16 80.5
Msa0936650 AT1G05530.1 24.920 313 203 10 8 302 3 301 1.62e-16 80.1
Msa0936650 AT3G53150.1 23.795 332 203 12 7 301 19 337 4.31e-16 79.0
Msa0936650 AT1G30530.1 23.750 320 211 10 1 299 1 308 6.80e-16 78.2
Msa0936650 AT2G30150.2 24.595 309 200 10 10 299 13 307 1.36e-15 77.4
Msa0936650 AT3G16520.1 25.854 205 129 6 108 299 113 307 5.23e-15 75.5
Msa0936650 AT3G16520.2 25.854 205 129 6 108 299 113 307 5.26e-15 75.5
Msa0936650 AT3G16520.3 25.854 205 129 6 108 299 113 307 6.28e-15 75.5
Msa0936650 AT5G66690.1 25.776 322 185 12 8 300 5 301 2.34e-14 73.9
Msa0936650 AT1G51210.1 26.398 322 197 12 8 306 18 322 2.80e-14 73.6
Msa0936650 AT2G30150.1 24.342 304 197 10 15 299 2 291 3.25e-14 73.2
Msa0936650 AT1G01390.2 25.538 325 199 11 9 307 24 331 3.28e-14 73.2
Msa0936650 AT1G01390.1 25.538 325 199 11 9 307 7 314 3.34e-14 73.2
Msa0936650 AT5G17050.1 22.293 314 215 7 7 299 9 314 5.54e-14 72.4
Msa0936650 AT5G17040.1 23.333 300 213 7 10 299 5 297 7.71e-14 72.0
Msa0936650 AT2G23210.1 24.731 279 185 8 1 264 1 269 1.74e-13 70.1
Msa0936650 AT1G01420.2 25.078 319 191 10 9 299 10 308 2.92e-13 70.5
Msa0936650 AT3G21800.1 25.079 315 197 10 12 299 7 309 2.96e-13 70.5
Msa0936650 AT1G01420.1 25.078 319 191 10 9 299 7 305 3.19e-13 70.5
Msa0936650 AT1G10400.1 26.627 338 191 16 8 306 5 324 6.59e-12 66.2
Msa0936650 AT3G21780.1 24.051 316 202 10 8 299 2 303 6.78e-12 66.2
Msa0936650 AT4G15280.2 23.364 321 207 10 6 299 32 340 9.47e-12 65.9
Msa0936650 AT5G12890.1 25.672 335 200 14 1 300 1 321 1.29e-11 65.5
Msa0936650 AT4G15280.1 23.197 319 206 10 8 299 2 308 1.83e-11 65.1
Msa0936650 AT3G50740.1 23.853 327 190 12 8 300 5 306 2.98e-11 64.3

Find 50 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATCTTCCTACTTTAATT+AGG 0.231984 6_3:+7522627 Msa0936650:CDS
AGACCATTCTGAAACAATTT+AGG 0.239210 6_3:-7522124 None:intergenic
TCAGCAACTTCTACTGTAAA+TGG 0.239778 6_3:-7522031 None:intergenic
CATCTTTAGATTCTAATCTT+TGG 0.240223 6_3:+7522849 Msa0936650:CDS
ATGTAGTGCTTGTTTCTTCT+TGG 0.269212 6_3:+7522087 Msa0936650:CDS
TTGAAACCATCAAAGGCTTT+TGG 0.275289 6_3:-7521806 None:intergenic
TCTGTTGTTTATGTAAATTT+TGG 0.280760 6_3:+7522920 Msa0936650:CDS
GCAAAACTTCTTCACCTTAG+AGG 0.292624 6_3:+7521722 Msa0936650:CDS
GTTTCAACAATGCATTGATA+TGG 0.308101 6_3:-7521697 None:intergenic
CATGGCGAAAATAGAACAAT+TGG 0.344321 6_3:-7522067 None:intergenic
TCAGAAACAAAGCAAGTTAC+TGG 0.351048 6_3:-7521998 None:intergenic
ATATGGCCTTGAACTGGATA+TGG 0.362063 6_3:-7521680 None:intergenic
AAGGGTCCAAAAGCCTTTGA+TGG 0.381595 6_3:+7521800 Msa0936650:CDS
ATTAGGCCTGATCTTGTCAT+TGG 0.388944 6_3:+7523025 Msa0936650:CDS
AGGTTATGTGAAAGCCTCTA+AGG 0.390826 6_3:-7521736 None:intergenic
TTTCCTTCTCTATACACAAT+TGG 0.399449 6_3:+7522782 Msa0936650:CDS
GAAATTGTTAGAGTTTGCTT+GGG 0.411975 6_3:+7522967 Msa0936650:CDS
AATTCTATCATCAAGTCATT+AGG 0.416224 6_3:-7522659 None:intergenic
AGAAATTGTTAGAGTTTGCT+TGG 0.416951 6_3:+7522966 Msa0936650:CDS
AGTGCTTGTTTCTTCTTGGC+TGG 0.441801 6_3:+7522091 Msa0936650:CDS
TGATCTTGTCATTGGTGGCT+CGG 0.445782 6_3:+7523033 Msa0936650:CDS
AGGCCTGATCTTGTCATTGG+TGG 0.464524 6_3:+7523028 Msa0936650:CDS
ATTCCTAAATTGTTTCAGAA+TGG 0.469533 6_3:+7522121 Msa0936650:CDS
TCCATCGGTGTTAAACCATC+TGG 0.471701 6_3:-7521851 None:intergenic
GCATTGATATGGCCTTGAAC+TGG 0.479128 6_3:-7521686 None:intergenic
AAGATACTAAATGTCTTGAA+TGG 0.490321 6_3:+7522876 Msa0936650:CDS
CAAACGTTTGCTCAAATCAA+AGG 0.494520 6_3:+7521781 Msa0936650:CDS
TTAACTCCATATCCAGTTCA+AGG 0.502163 6_3:+7521674 Msa0936650:CDS
GAGCCACCAATGACAAGATC+AGG 0.503138 6_3:-7523031 None:intergenic
ATAGAATTTATGACTGAAGT+GGG 0.517633 6_3:+7522674 Msa0936650:CDS
ATGGCGAAAATAGAACAATT+GGG 0.520117 6_3:-7522066 None:intergenic
ACCATCTGGTATGGTCTCAA+AGG 0.528576 6_3:-7521837 None:intergenic
CTTCATGAATCTGCTACTGC+TGG 0.533056 6_3:+7521965 Msa0936650:CDS
CGGTGTTAAACCATCTGGTA+TGG 0.538431 6_3:-7521846 None:intergenic
AAACGTTTGCTCAAATCAAA+GGG 0.550312 6_3:+7521782 Msa0936650:CDS
ACCAGATGGTTTAACACCGA+TGG 0.563049 6_3:+7521850 Msa0936650:CDS
AAGAAGAAACAAGCACTACA+TGG 0.574532 6_3:-7522085 None:intergenic
GGACCAATTGTGTATAGAGA+AGG 0.575794 6_3:-7522785 None:intergenic
AAAATCATTGAAACCATCAA+AGG 0.587289 6_3:-7521813 None:intergenic
GATAGAATTTATGACTGAAG+TGG 0.596409 6_3:+7522673 Msa0936650:CDS
ACCTTTGAGACCATACCAGA+TGG 0.602303 6_3:+7521836 Msa0936650:CDS
TAAATGATATTACCTTTGAG+TGG 0.622417 6_3:-7522151 None:intergenic
AAATTGTTAGAGTTTGCTTG+GGG 0.637062 6_3:+7522968 Msa0936650:CDS
AATGGTCTACTACCACTCAA+AGG 0.639842 6_3:+7522139 Msa0936650:CDS
GATGGTTTAACACCGATGGA+AGG 0.648269 6_3:+7521854 Msa0936650:CDS
ACATCACCATCACCTTCCAT+CGG 0.649341 6_3:-7521866 None:intergenic
ATTGTATTCAGTGTTGACAA+AGG 0.675767 6_3:-7521756 None:intergenic
GAAACAAAGCAAGTTACTGG+AGG 0.675827 6_3:-7521995 None:intergenic
TATGGAGTTAACACTGCATG+TGG 0.701369 6_3:-7521662 None:intergenic
TTAACACCGATGGAAGGTGA+TGG 0.721857 6_3:+7521860 Msa0936650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGAAACAAATGGATATT+TGG + chr6_3:7522559-7522578 Msa0936650:intron 20.0%
!!! AATCTAAAGTTTTTCAAAAC+TGG - chr6_3:7522605-7522624 None:intergenic 20.0%
!! TTTGAAAAACTTTAGATTGA+AGG + chr6_3:7522607-7522626 Msa0936650:CDS 20.0%
!!! TCTGTTGTTTATGTAAATTT+TGG + chr6_3:7522920-7522939 Msa0936650:CDS 20.0%
!! TTATGAAACAAATGGATATT+TGG + chr6_3:7522559-7522578 Msa0936650:intron 20.0%
!!! AATCTAAAGTTTTTCAAAAC+TGG - chr6_3:7522605-7522624 None:intergenic 20.0%
!! TTTGAAAAACTTTAGATTGA+AGG + chr6_3:7522607-7522626 Msa0936650:CDS 20.0%
!!! TCTGTTGTTTATGTAAATTT+TGG + chr6_3:7522920-7522939 Msa0936650:CDS 20.0%
! AAAATCATTGAAACCATCAA+AGG - chr6_3:7521816-7521835 None:intergenic 25.0%
!!! AAGAACTTTTGTCACTTTTT+TGG + chr6_3:7521926-7521945 Msa0936650:intron 25.0%
! ATTCCTAAATTGTTTCAGAA+TGG + chr6_3:7522121-7522140 Msa0936650:CDS 25.0%
! TAAATGATATTACCTTTGAG+TGG - chr6_3:7522154-7522173 None:intergenic 25.0%
!! TGTATCAAGGTTCTTTAAAA+AGG + chr6_3:7522224-7522243 Msa0936650:intron 25.0%
! CAAATGCGATTATAAATGTT+CGG - chr6_3:7522269-7522288 None:intergenic 25.0%
! ATTCTCTTCAGTGTTAATTT+GGG + chr6_3:7522450-7522469 Msa0936650:intron 25.0%
!! GAATGTGATTTTATACTTCA+AGG + chr6_3:7522501-7522520 Msa0936650:intron 25.0%
!! TCTTTTGTCCTAATTAAAGT+AGG - chr6_3:7522638-7522657 None:intergenic 25.0%
! AATTCTATCATCAAGTCATT+AGG - chr6_3:7522662-7522681 None:intergenic 25.0%
! ATAGAATTTATGACTGAAGT+GGG + chr6_3:7522674-7522693 Msa0936650:CDS 25.0%
! CATCTTTAGATTCTAATCTT+TGG + chr6_3:7522849-7522868 Msa0936650:CDS 25.0%
! AAGATACTAAATGTCTTGAA+TGG + chr6_3:7522876-7522895 Msa0936650:CDS 25.0%
!!! AACCTTTTTTGTGGATTATT+AGG + chr6_3:7523008-7523027 Msa0936650:CDS 25.0%
! AAAATCATTGAAACCATCAA+AGG - chr6_3:7521816-7521835 None:intergenic 25.0%
!!! AAGAACTTTTGTCACTTTTT+TGG + chr6_3:7521926-7521945 Msa0936650:intron 25.0%
! ATTCCTAAATTGTTTCAGAA+TGG + chr6_3:7522121-7522140 Msa0936650:CDS 25.0%
! TAAATGATATTACCTTTGAG+TGG - chr6_3:7522154-7522173 None:intergenic 25.0%
!! TGTATCAAGGTTCTTTAAAA+AGG + chr6_3:7522224-7522243 Msa0936650:intron 25.0%
! CAAATGCGATTATAAATGTT+CGG - chr6_3:7522269-7522288 None:intergenic 25.0%
! ATTCTCTTCAGTGTTAATTT+GGG + chr6_3:7522450-7522469 Msa0936650:intron 25.0%
!! GAATGTGATTTTATACTTCA+AGG + chr6_3:7522501-7522520 Msa0936650:intron 25.0%
!! TCTTTTGTCCTAATTAAAGT+AGG - chr6_3:7522638-7522657 None:intergenic 25.0%
! AATTCTATCATCAAGTCATT+AGG - chr6_3:7522662-7522681 None:intergenic 25.0%
! ATAGAATTTATGACTGAAGT+GGG + chr6_3:7522674-7522693 Msa0936650:CDS 25.0%
! CATCTTTAGATTCTAATCTT+TGG + chr6_3:7522849-7522868 Msa0936650:CDS 25.0%
! AAGATACTAAATGTCTTGAA+TGG + chr6_3:7522876-7522895 Msa0936650:CDS 25.0%
!!! AACCTTTTTTGTGGATTATT+AGG + chr6_3:7523008-7523027 Msa0936650:CDS 25.0%
! GTTTCAACAATGCATTGATA+TGG - chr6_3:7521700-7521719 None:intergenic 30.0%
!! ATTGTATTCAGTGTTGACAA+AGG - chr6_3:7521759-7521778 None:intergenic 30.0%
AAACGTTTGCTCAAATCAAA+GGG + chr6_3:7521782-7521801 Msa0936650:CDS 30.0%
ATGGCGAAAATAGAACAATT+GGG - chr6_3:7522069-7522088 None:intergenic 30.0%
!! AGACCATTCTGAAACAATTT+AGG - chr6_3:7522127-7522146 None:intergenic 30.0%
GATTCTCTTCAGTGTTAATT+TGG + chr6_3:7522449-7522468 Msa0936650:intron 30.0%
GATGAGAGTTATGAAACAAA+TGG + chr6_3:7522551-7522570 Msa0936650:intron 30.0%
ATTTGGACACTATAGTTGAT+TGG + chr6_3:7522576-7522595 Msa0936650:intron 30.0%
AGGATCTTCCTACTTTAATT+AGG + chr6_3:7522627-7522646 Msa0936650:CDS 30.0%
GATAGAATTTATGACTGAAG+TGG + chr6_3:7522673-7522692 Msa0936650:CDS 30.0%
TTTCCTTCTCTATACACAAT+TGG + chr6_3:7522782-7522801 Msa0936650:CDS 30.0%
TGACTTAAAAACGAAGCAAA+CGG - chr6_3:7522809-7522828 None:intergenic 30.0%
! AAAGATGTCAAGTGATTTTG+CGG - chr6_3:7522836-7522855 None:intergenic 30.0%
! AGAAATTGTTAGAGTTTGCT+TGG + chr6_3:7522966-7522985 Msa0936650:CDS 30.0%
! GAAATTGTTAGAGTTTGCTT+GGG + chr6_3:7522967-7522986 Msa0936650:CDS 30.0%
! AAATTGTTAGAGTTTGCTTG+GGG + chr6_3:7522968-7522987 Msa0936650:CDS 30.0%
! GTTTCAACAATGCATTGATA+TGG - chr6_3:7521700-7521719 None:intergenic 30.0%
!! ATTGTATTCAGTGTTGACAA+AGG - chr6_3:7521759-7521778 None:intergenic 30.0%
AAACGTTTGCTCAAATCAAA+GGG + chr6_3:7521782-7521801 Msa0936650:CDS 30.0%
ATGGCGAAAATAGAACAATT+GGG - chr6_3:7522069-7522088 None:intergenic 30.0%
!! AGACCATTCTGAAACAATTT+AGG - chr6_3:7522127-7522146 None:intergenic 30.0%
GATTCTCTTCAGTGTTAATT+TGG + chr6_3:7522449-7522468 Msa0936650:intron 30.0%
GATGAGAGTTATGAAACAAA+TGG + chr6_3:7522551-7522570 Msa0936650:intron 30.0%
ATTTGGACACTATAGTTGAT+TGG + chr6_3:7522576-7522595 Msa0936650:intron 30.0%
AGGATCTTCCTACTTTAATT+AGG + chr6_3:7522627-7522646 Msa0936650:CDS 30.0%
GATAGAATTTATGACTGAAG+TGG + chr6_3:7522673-7522692 Msa0936650:CDS 30.0%
TTTCCTTCTCTATACACAAT+TGG + chr6_3:7522782-7522801 Msa0936650:CDS 30.0%
TGACTTAAAAACGAAGCAAA+CGG - chr6_3:7522809-7522828 None:intergenic 30.0%
! AAAGATGTCAAGTGATTTTG+CGG - chr6_3:7522836-7522855 None:intergenic 30.0%
! AGAAATTGTTAGAGTTTGCT+TGG + chr6_3:7522966-7522985 Msa0936650:CDS 30.0%
! GAAATTGTTAGAGTTTGCTT+GGG + chr6_3:7522967-7522986 Msa0936650:CDS 30.0%
! AAATTGTTAGAGTTTGCTTG+GGG + chr6_3:7522968-7522987 Msa0936650:CDS 30.0%
TTAACTCCATATCCAGTTCA+AGG + chr6_3:7521674-7521693 Msa0936650:CDS 35.0%
CAAACGTTTGCTCAAATCAA+AGG + chr6_3:7521781-7521800 Msa0936650:CDS 35.0%
! TTGAAACCATCAAAGGCTTT+TGG - chr6_3:7521809-7521828 None:intergenic 35.0%
TCAGAAACAAAGCAAGTTAC+TGG - chr6_3:7522001-7522020 None:intergenic 35.0%
TCAGCAACTTCTACTGTAAA+TGG - chr6_3:7522034-7522053 None:intergenic 35.0%
CATGGCGAAAATAGAACAAT+TGG - chr6_3:7522070-7522089 None:intergenic 35.0%
AAGAAGAAACAAGCACTACA+TGG - chr6_3:7522088-7522107 None:intergenic 35.0%
! ATGTAGTGCTTGTTTCTTCT+TGG + chr6_3:7522087-7522106 Msa0936650:CDS 35.0%
ACATCTCTTTGGTAGAAAAG+GGG - chr6_3:7522181-7522200 None:intergenic 35.0%
CACATCTCTTTGGTAGAAAA+GGG - chr6_3:7522182-7522201 None:intergenic 35.0%
ACACATCTCTTTGGTAGAAA+AGG - chr6_3:7522183-7522202 None:intergenic 35.0%
CATACATACACACATCTCTT+TGG - chr6_3:7522192-7522211 None:intergenic 35.0%
! TCTTCAGTGTTAATTTGGGT+GGG + chr6_3:7522454-7522473 Msa0936650:intron 35.0%
! CAAAAAAGGTTTCTTGCTGT+TGG - chr6_3:7522999-7523018 None:intergenic 35.0%
!!! ACAGCAAGAAACCTTTTTTG+TGG + chr6_3:7522999-7523018 Msa0936650:CDS 35.0%
GGCCTAATAATCCACAAAAA+AGG - chr6_3:7523013-7523032 None:intergenic 35.0%
TTAACTCCATATCCAGTTCA+AGG + chr6_3:7521674-7521693 Msa0936650:CDS 35.0%
CAAACGTTTGCTCAAATCAA+AGG + chr6_3:7521781-7521800 Msa0936650:CDS 35.0%
! TTGAAACCATCAAAGGCTTT+TGG - chr6_3:7521809-7521828 None:intergenic 35.0%
TCAGAAACAAAGCAAGTTAC+TGG - chr6_3:7522001-7522020 None:intergenic 35.0%
TCAGCAACTTCTACTGTAAA+TGG - chr6_3:7522034-7522053 None:intergenic 35.0%
CATGGCGAAAATAGAACAAT+TGG - chr6_3:7522070-7522089 None:intergenic 35.0%
AAGAAGAAACAAGCACTACA+TGG - chr6_3:7522088-7522107 None:intergenic 35.0%
! ATGTAGTGCTTGTTTCTTCT+TGG + chr6_3:7522087-7522106 Msa0936650:CDS 35.0%
ACATCTCTTTGGTAGAAAAG+GGG - chr6_3:7522181-7522200 None:intergenic 35.0%
CACATCTCTTTGGTAGAAAA+GGG - chr6_3:7522182-7522201 None:intergenic 35.0%
ACACATCTCTTTGGTAGAAA+AGG - chr6_3:7522183-7522202 None:intergenic 35.0%
CATACATACACACATCTCTT+TGG - chr6_3:7522192-7522211 None:intergenic 35.0%
! TCTTCAGTGTTAATTTGGGT+GGG + chr6_3:7522454-7522473 Msa0936650:intron 35.0%
! CAAAAAAGGTTTCTTGCTGT+TGG - chr6_3:7522999-7523018 None:intergenic 35.0%
!!! ACAGCAAGAAACCTTTTTTG+TGG + chr6_3:7522999-7523018 Msa0936650:CDS 35.0%
GGCCTAATAATCCACAAAAA+AGG - chr6_3:7523013-7523032 None:intergenic 35.0%
TATGGAGTTAACACTGCATG+TGG - chr6_3:7521665-7521684 None:intergenic 40.0%
! ATATGGCCTTGAACTGGATA+TGG - chr6_3:7521683-7521702 None:intergenic 40.0%
GCAAAACTTCTTCACCTTAG+AGG + chr6_3:7521722-7521741 Msa0936650:CDS 40.0%
AGGTTATGTGAAAGCCTCTA+AGG - chr6_3:7521739-7521758 None:intergenic 40.0%
GAAACAAAGCAAGTTACTGG+AGG - chr6_3:7521998-7522017 None:intergenic 40.0%
AATGGTCTACTACCACTCAA+AGG + chr6_3:7522139-7522158 Msa0936650:CDS 40.0%
CATCTCTTTGGTAGAAAAGG+GGG - chr6_3:7522180-7522199 None:intergenic 40.0%
GTGTGTGTTTGTGTGTATCA+AGG + chr6_3:7522211-7522230 Msa0936650:intron 40.0%
GAAGTTGCATCAGCTTCATT+TGG + chr6_3:7522288-7522307 Msa0936650:intron 40.0%
! CTCTTCAGTGTTAATTTGGG+TGG + chr6_3:7522453-7522472 Msa0936650:intron 40.0%
! CTTCAGTGTTAATTTGGGTG+GGG + chr6_3:7522455-7522474 Msa0936650:intron 40.0%
GGACCAATTGTGTATAGAGA+AGG - chr6_3:7522788-7522807 None:intergenic 40.0%
ATTAGGCCTGATCTTGTCAT+TGG + chr6_3:7523025-7523044 Msa0936650:CDS 40.0%
TATGGAGTTAACACTGCATG+TGG - chr6_3:7521665-7521684 None:intergenic 40.0%
! ATATGGCCTTGAACTGGATA+TGG - chr6_3:7521683-7521702 None:intergenic 40.0%
GCAAAACTTCTTCACCTTAG+AGG + chr6_3:7521722-7521741 Msa0936650:CDS 40.0%
AGGTTATGTGAAAGCCTCTA+AGG - chr6_3:7521739-7521758 None:intergenic 40.0%
GAAACAAAGCAAGTTACTGG+AGG - chr6_3:7521998-7522017 None:intergenic 40.0%
AATGGTCTACTACCACTCAA+AGG + chr6_3:7522139-7522158 Msa0936650:CDS 40.0%
CATCTCTTTGGTAGAAAAGG+GGG - chr6_3:7522180-7522199 None:intergenic 40.0%
GTGTGTGTTTGTGTGTATCA+AGG + chr6_3:7522211-7522230 Msa0936650:intron 40.0%
GAAGTTGCATCAGCTTCATT+TGG + chr6_3:7522288-7522307 Msa0936650:intron 40.0%
! CTCTTCAGTGTTAATTTGGG+TGG + chr6_3:7522453-7522472 Msa0936650:intron 40.0%
! CTTCAGTGTTAATTTGGGTG+GGG + chr6_3:7522455-7522474 Msa0936650:intron 40.0%
GGACCAATTGTGTATAGAGA+AGG - chr6_3:7522788-7522807 None:intergenic 40.0%
ATTAGGCCTGATCTTGTCAT+TGG + chr6_3:7523025-7523044 Msa0936650:CDS 40.0%
! GCATTGATATGGCCTTGAAC+TGG - chr6_3:7521689-7521708 None:intergenic 45.0%
AAGGGTCCAAAAGCCTTTGA+TGG + chr6_3:7521800-7521819 Msa0936650:CDS 45.0%
!! ACCTTTGAGACCATACCAGA+TGG + chr6_3:7521836-7521855 Msa0936650:CDS 45.0%
ACCATCTGGTATGGTCTCAA+AGG - chr6_3:7521840-7521859 None:intergenic 45.0%
! CGGTGTTAAACCATCTGGTA+TGG - chr6_3:7521849-7521868 None:intergenic 45.0%
ACCAGATGGTTTAACACCGA+TGG + chr6_3:7521850-7521869 Msa0936650:CDS 45.0%
!! TCCATCGGTGTTAAACCATC+TGG - chr6_3:7521854-7521873 None:intergenic 45.0%
GATGGTTTAACACCGATGGA+AGG + chr6_3:7521854-7521873 Msa0936650:CDS 45.0%
TTAACACCGATGGAAGGTGA+TGG + chr6_3:7521860-7521879 Msa0936650:CDS 45.0%
ACATCACCATCACCTTCCAT+CGG - chr6_3:7521869-7521888 None:intergenic 45.0%
CTTCATGAATCTGCTACTGC+TGG + chr6_3:7521965-7521984 Msa0936650:CDS 45.0%
! AGTGCTTGTTTCTTCTTGGC+TGG + chr6_3:7522091-7522110 Msa0936650:CDS 45.0%
AAAGGTCCTCGAACGCAATA+TGG + chr6_3:7522242-7522261 Msa0936650:intron 45.0%
TAAACCCACTTGAGTTAGCC+CGG + chr6_3:7522375-7522394 Msa0936650:intron 45.0%
!! TTAGCCCGGTGGTATTGATT+TGG + chr6_3:7522389-7522408 Msa0936650:intron 45.0%
!! TAGCCCGGTGGTATTGATTT+GGG + chr6_3:7522390-7522409 Msa0936650:intron 45.0%
AGGTCCCAAATCAATACCAC+CGG - chr6_3:7522397-7522416 None:intergenic 45.0%
!! GTGGTATTGATTTGGGACCT+GGG + chr6_3:7522397-7522416 Msa0936650:intron 45.0%
! TGATCTTGTCATTGGTGGCT+CGG + chr6_3:7523033-7523052 Msa0936650:CDS 45.0%
! GCATTGATATGGCCTTGAAC+TGG - chr6_3:7521689-7521708 None:intergenic 45.0%
AAGGGTCCAAAAGCCTTTGA+TGG + chr6_3:7521800-7521819 Msa0936650:CDS 45.0%
!! ACCTTTGAGACCATACCAGA+TGG + chr6_3:7521836-7521855 Msa0936650:CDS 45.0%
ACCATCTGGTATGGTCTCAA+AGG - chr6_3:7521840-7521859 None:intergenic 45.0%
! CGGTGTTAAACCATCTGGTA+TGG - chr6_3:7521849-7521868 None:intergenic 45.0%
ACCAGATGGTTTAACACCGA+TGG + chr6_3:7521850-7521869 Msa0936650:CDS 45.0%
!! TCCATCGGTGTTAAACCATC+TGG - chr6_3:7521854-7521873 None:intergenic 45.0%
GATGGTTTAACACCGATGGA+AGG + chr6_3:7521854-7521873 Msa0936650:CDS 45.0%
TTAACACCGATGGAAGGTGA+TGG + chr6_3:7521860-7521879 Msa0936650:CDS 45.0%
ACATCACCATCACCTTCCAT+CGG - chr6_3:7521869-7521888 None:intergenic 45.0%
CTTCATGAATCTGCTACTGC+TGG + chr6_3:7521965-7521984 Msa0936650:CDS 45.0%
! AGTGCTTGTTTCTTCTTGGC+TGG + chr6_3:7522091-7522110 Msa0936650:CDS 45.0%
AAAGGTCCTCGAACGCAATA+TGG + chr6_3:7522242-7522261 Msa0936650:intron 45.0%
TAAACCCACTTGAGTTAGCC+CGG + chr6_3:7522375-7522394 Msa0936650:intron 45.0%
!! TTAGCCCGGTGGTATTGATT+TGG + chr6_3:7522389-7522408 Msa0936650:intron 45.0%
!! TAGCCCGGTGGTATTGATTT+GGG + chr6_3:7522390-7522409 Msa0936650:intron 45.0%
AGGTCCCAAATCAATACCAC+CGG - chr6_3:7522397-7522416 None:intergenic 45.0%
!! GTGGTATTGATTTGGGACCT+GGG + chr6_3:7522397-7522416 Msa0936650:intron 45.0%
! TGATCTTGTCATTGGTGGCT+CGG + chr6_3:7523033-7523052 Msa0936650:CDS 45.0%
TTCGGTCCATATTGCGTTCG+AGG - chr6_3:7522251-7522270 None:intergenic 50.0%
GGTCCCAAATCAATACCACC+GGG - chr6_3:7522396-7522415 None:intergenic 50.0%
!! GGTGGTATTGATTTGGGACC+TGG + chr6_3:7522396-7522415 Msa0936650:intron 50.0%
AGGCCTGATCTTGTCATTGG+TGG + chr6_3:7523028-7523047 Msa0936650:CDS 50.0%
GAGCCACCAATGACAAGATC+AGG - chr6_3:7523034-7523053 None:intergenic 50.0%
TTCGGTCCATATTGCGTTCG+AGG - chr6_3:7522251-7522270 None:intergenic 50.0%
GGTCCCAAATCAATACCACC+GGG - chr6_3:7522396-7522415 None:intergenic 50.0%
!! GGTGGTATTGATTTGGGACC+TGG + chr6_3:7522396-7522415 Msa0936650:intron 50.0%
AGGCCTGATCTTGTCATTGG+TGG + chr6_3:7523028-7523047 Msa0936650:CDS 50.0%
GAGCCACCAATGACAAGATC+AGG - chr6_3:7523034-7523053 None:intergenic 50.0%
ACCACCGGGCTAACTCAAGT+GGG - chr6_3:7522382-7522401 None:intergenic 55.0%
TACCACCGGGCTAACTCAAG+TGG - chr6_3:7522383-7522402 None:intergenic 55.0%
GAATCGAACCTGAGACCTCG+AGG - chr6_3:7522434-7522453 None:intergenic 55.0%
ACCACCGGGCTAACTCAAGT+GGG - chr6_3:7522382-7522401 None:intergenic 55.0%
TACCACCGGGCTAACTCAAG+TGG - chr6_3:7522383-7522402 None:intergenic 55.0%
GAATCGAACCTGAGACCTCG+AGG - chr6_3:7522434-7522453 None:intergenic 55.0%
ACCCACTTGAGTTAGCCCGG+TGG + chr6_3:7522378-7522397 Msa0936650:intron 60.0%
! TCGAGGAGGAGCATACTCCC+AGG - chr6_3:7522417-7522436 None:intergenic 60.0%
! TGGGAGTATGCTCCTCCTCG+AGG + chr6_3:7522416-7522435 Msa0936650:intron 60.0%
ATGCTCCTCCTCGAGGTCTC+AGG + chr6_3:7522423-7522442 Msa0936650:intron 60.0%
TCGAACCTGAGACCTCGAGG+AGG - chr6_3:7522431-7522450 None:intergenic 60.0%
ACCCACTTGAGTTAGCCCGG+TGG + chr6_3:7522378-7522397 Msa0936650:intron 60.0%
! TCGAGGAGGAGCATACTCCC+AGG - chr6_3:7522417-7522436 None:intergenic 60.0%
! TGGGAGTATGCTCCTCCTCG+AGG + chr6_3:7522416-7522435 Msa0936650:intron 60.0%
ATGCTCCTCCTCGAGGTCTC+AGG + chr6_3:7522423-7522442 Msa0936650:intron 60.0%
TCGAACCTGAGACCTCGAGG+AGG - chr6_3:7522431-7522450 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 7521638 7523069 7521638 ID=Msa0936650;Name=Msa0936650
chr6_3 mRNA 7521638 7523069 7521638 ID=Msa0936650-mRNA-1;Parent=Msa0936650;Name=Msa0936650-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|0.33|0|4|0|312
chr6_3 exon 7521638 7521886 7521638 ID=Msa0936650-mRNA-1:exon:2442;Parent=Msa0936650-mRNA-1
chr6_3 exon 7521929 7522160 7521929 ID=Msa0936650-mRNA-1:exon:2443;Parent=Msa0936650-mRNA-1
chr6_3 exon 7522606 7522816 7522606 ID=Msa0936650-mRNA-1:exon:2444;Parent=Msa0936650-mRNA-1
chr6_3 exon 7522826 7523069 7522826 ID=Msa0936650-mRNA-1:exon:2445;Parent=Msa0936650-mRNA-1
chr6_3 CDS 7521638 7521886 7521638 ID=Msa0936650-mRNA-1:cds;Parent=Msa0936650-mRNA-1
chr6_3 CDS 7521929 7522160 7521929 ID=Msa0936650-mRNA-1:cds;Parent=Msa0936650-mRNA-1
chr6_3 CDS 7522606 7522816 7522606 ID=Msa0936650-mRNA-1:cds;Parent=Msa0936650-mRNA-1
chr6_3 CDS 7522826 7523069 7522826 ID=Msa0936650-mRNA-1:cds;Parent=Msa0936650-mRNA-1
Gene Sequence

>Msa0936650

ATGAGTAACTTTGCAAAGAGAAAACCACATGCAGTGTTAACTCCATATCCAGTTCAAGGCCATATCAATGCATTGTTGAAACTAGCAAAACTTCTTCACCTTAGAGGCTTTCACATAACCTTTGTCAACACTGAATACAATCACAAACGTTTGCTCAAATCAAAGGGTCCAAAAGCCTTTGATGGTTTCAATGATTTTACCTTTGAGACCATACCAGATGGTTTAACACCGATGGAAGGTGATGGTGATAACTTTTGTCACTTTTTTGGTGAACTTTTTGCTAAACTTCATGAATCTGCTACTGCTGGTTATATACCTCCAGTAACTTGCTTTGTTTCTGATTGCTATATGCCATTTACAGTAGAAGTTGCTGAAGAACATTCACTCCCAATTGTTCTATTTTCGCCATGTAGTGCTTGTTTCTTCTTGGCTGGTTTTCATATTCCTAAATTGTTTCAGAATGGTCTACTACCACTCAAAGTTTTGAAAAACTTTAGATTGAAGGATCTTCCTACTTTAATTAGGACAAAAGATCCTAATGACTTGATGATAGAATTTATGACTGAAGTGGGAGATAAATGTCACAAAGCTTCTGCTATTGTTTTCAACACTTCTTATGAACTTGAGAGTGATGTTATGAATGCTCTTAGTTCTATATTTCCTTCTCTATACACAATTGGTCCGTTTGCTTCTCAAAGTCCGCAAAATCACTTGACATCTTTAGATTCTAATCTTTGGAAAGAAGATACTAAATGTCTTGAATGGCTTGAATCAAAAGAATCAAAATCTGTTGTTTATGTAAATTTTGGCAGCATCATAGTTATGTCTCAAGAGAAATTGTTAGAGTTTGCTTGGGGTTTAGCCAACAGCAAGAAACCTTTTTTGTGGATTATTAGGCCTGATCTTGTCATTGGTGGCTCGGTTGTTTTGTCATCG
Protein sequence

>Msa0936650

MSNFAKRKPHAVLTPYPVQGHINALLKLAKLLHLRGFHITFVNTEYNHKRLLKSKGPKAFDGFNDFTFETIPDGLTPMEGDGDNFCHFFGELFAKLHESATAGYIPPVTCFVSDCYMPFTVEVAEEHSLPIVLFSPCSACFFLAGFHIPKLFQNGLLPLKVLKNFRLKDLPTLIRTKDPNDLMIEFMTEVGDKCHKASAIVFNTSYELESDVMNALSSIFPSLYTIGPFASQSPQNHLTSLDSNLWKEDTKCLEWLESKESKSVVYVNFGSIIVMSQEKLLEFAWGLANSKKPFLWIIRPDLVIGGSVVLSS