AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0688110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688110 MtrunA17_Chr4g0033061 97.449 588 15 0 1 588 1 588 0.0 1195
Msa0688110 MtrunA17_Chr2g0329091 69.118 612 140 18 1 586 1 589 0.0 786
Msa0688110 MtrunA17_Chr8g0392321 38.889 324 176 4 265 584 150 455 1.38e-71 238
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688110 AT5G12900.1 51.946 591 218 15 24 588 12 562 0.0 563
Msa0688110 AT1G12330.1 34.459 444 247 11 150 583 63 472 2.75e-69 233

Find 126 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGACGGTCAATGAATTT+TGG 0.121316 4_4:-53371165 None:intergenic
TCTTCAGATTCTGCTCTATT+TGG 0.170887 4_4:-53370577 None:intergenic
TGTTTCTCTGTTCTGTTTCA+TGG 0.173434 4_4:+53369014 Msa0688110:exon
GCATTACCACTACTCTAAAT+TGG 0.198308 4_4:+53371313 Msa0688110:CDS
TTTCTTCAATGTTGTTTATA+AGG 0.223578 4_4:-53370981 None:intergenic
ACATGTTTCCTAGTTTATTT+AGG 0.258740 4_4:-53371601 None:intergenic
TCTCGTCATTCGTTGCTCTT+AGG 0.269047 4_4:+53371205 Msa0688110:CDS
TTGCTTGGACCCTGTGACCT+TGG 0.298273 4_4:-53371495 None:intergenic
CAGAACTGCCTTTGAGTACT+TGG 0.306166 4_4:-53371067 None:intergenic
ATGTTAAGGATAGGGTATTA+AGG 0.314700 4_4:+53371547 Msa0688110:CDS
CTTACTCCTGTAGCTTTCAT+TGG 0.318767 4_4:-53370332 None:intergenic
AACTACAAGACAGGAAATTA+AGG 0.323447 4_4:+53369092 Msa0688110:CDS
GATTTATGAAAGCTTCAAAA+TGG 0.324347 4_4:-53371092 None:intergenic
ACAAGAGCCGGTTACGGATT+TGG 0.324635 4_4:-53370275 None:intergenic
AACTCACTAGTTATGATTGC+AGG 0.324702 4_4:-53370409 None:intergenic
TTCTGAGATGCGATGTTCAT+TGG 0.343847 4_4:+53370702 Msa0688110:CDS
AACAGAGAAACAGAACAAAA+TGG 0.345493 4_4:-53369003 None:intergenic
TATTAATTATCACATAGATT+TGG 0.345494 4_4:-53371643 None:intergenic
CCCAACTTTCAGATATTGTT+AGG 0.351274 4_4:-53370120 None:intergenic
CGGGACATATGTGAGATTCT+TGG 0.356352 4_4:-53370243 None:intergenic
AGTTGGGATGAAGGAGAGTC+AGG 0.360043 4_4:+53370136 Msa0688110:CDS
TAAGAGAAGAAACAGTTTAG+AGG 0.360943 4_4:+53370351 Msa0688110:CDS
CCACTACTCTAAATTGGATT+AGG 0.362270 4_4:+53371319 Msa0688110:CDS
TTAGGCATTTCGTGTGGTTC+TGG 0.364717 4_4:-53370102 None:intergenic
AGCTCTTAGTTCCACTGCTT+TGG 0.367605 4_4:-53369124 None:intergenic
AACCTTTGATCATCGCTATA+TGG 0.369774 4_4:+53371461 Msa0688110:CDS
ACCATGATCTTAACTTTGCT+TGG 0.370606 4_4:-53371510 None:intergenic
GAATTTAGAGACAGCTTATA+CGG 0.371940 4_4:-53371045 None:intergenic
TGCAGGGTTACATTTATTGC+AGG 0.374680 4_4:-53370392 None:intergenic
ATTCTCACAGGTGTGAAAAC+AGG 0.375466 4_4:-53369249 None:intergenic
CTCTAAATTGGATTAGGCCT+TGG 0.377636 4_4:+53371325 Msa0688110:CDS
AAACCAGTGTACAAGATTAC+AGG 0.381028 4_4:+53370170 Msa0688110:CDS
GCCTAACAATATCTGAAAGT+TGG 0.386328 4_4:+53370119 Msa0688110:CDS
TGATTTCGTGGTTGTTTCCT+CGG 0.394790 4_4:+53370524 Msa0688110:CDS
ATCCCTGTAATCTTGTACAC+TGG 0.401675 4_4:-53370173 None:intergenic
CGTGGCAGGAACAACAATAT+TGG 0.408732 4_4:-53370458 None:intergenic
CCTAACAATATCTGAAAGTT+GGG 0.413549 4_4:+53370120 Msa0688110:CDS
ACGGATTTGGTGTCATCAAC+GGG 0.414851 4_4:-53370262 None:intergenic
TAGTTCCACTGCTTTGGCTA+TGG 0.416631 4_4:-53369118 None:intergenic
TTCCTAGTTTATTTAGGCTG+TGG 0.418321 4_4:-53371595 None:intergenic
GTTAAGATCATGGTTAATCC+AGG 0.427966 4_4:+53371519 Msa0688110:CDS
TAAGGTGTAAGGTCCTTTGC+AGG 0.436843 4_4:+53371565 Msa0688110:CDS
GCTTCTTCAAGCTTTCTTTG+TGG 0.438315 4_4:+53371356 Msa0688110:CDS
TCTGAGATGCGATGTTCATT+GGG 0.440475 4_4:+53370703 Msa0688110:CDS
GATAAACCAAGTTCAAGAAA+AGG 0.442732 4_4:+53370193 Msa0688110:CDS
GAGACAGAAGATGGAGTACT+TGG 0.456731 4_4:+53370732 Msa0688110:CDS
AAAGCTTGAAGAAGCTGCTC+AGG 0.463394 4_4:-53371348 None:intergenic
CTCCTGTAGCTTTCATTGGT+AGG 0.467705 4_4:-53370328 None:intergenic
CTGGAATGAAGTACTGAGAA+AGG 0.467976 4_4:+53371236 Msa0688110:CDS
GATGACACCAAATCCGTAAC+CGG 0.470105 4_4:+53370268 Msa0688110:CDS
TACGGATTTGGTGTCATCAA+CGG 0.471382 4_4:-53370263 None:intergenic
CAGAGAGGGAAATCAATTGA+TGG 0.474699 4_4:+53370856 Msa0688110:CDS
GAATGAGGAAGTAATGATAG+AGG 0.484289 4_4:+53370903 Msa0688110:CDS
ATAAACCAAGTTCAAGAAAA+GGG 0.488864 4_4:+53370194 Msa0688110:CDS
GAATAGAGATGTGGCGTTGG+TGG 0.489658 4_4:+53370675 Msa0688110:CDS
ATCATTACTTCCTCATTCAC+AGG 0.490591 4_4:-53370898 None:intergenic
AGATATGAGTCCAAGGTCAC+AGG 0.493415 4_4:+53371485 Msa0688110:CDS
ATATCTGAAAGTTGGGATGA+AGG 0.496923 4_4:+53370127 Msa0688110:CDS
ATCCCTTGCCTGCGTCTGCA+TGG 0.501502 4_4:-53370794 None:intergenic
ATTTGCACAAGAGCCGGTTA+CGG 0.506731 4_4:-53370281 None:intergenic
AAATGCAATTCTCAAAGTCT+TGG 0.511355 4_4:-53371125 None:intergenic
CAATATTGTTGTTCCTGCCA+CGG 0.511774 4_4:+53370459 Msa0688110:CDS
GGATAGGGTATTAAGGTGTA+AGG 0.513410 4_4:+53371554 Msa0688110:CDS
AGTCTGAAACGAAAAGCAAA+GGG 0.516834 4_4:+53370500 Msa0688110:CDS
TATATGATTTGCACAAGAGC+CGG 0.520360 4_4:-53370287 None:intergenic
GGGAGAGTTGAGACAGAAGA+TGG 0.523009 4_4:+53370723 Msa0688110:CDS
AAAGCAAAGGGGTGATTTCG+TGG 0.524133 4_4:+53370512 Msa0688110:CDS
ATGACGAGAATTTCGCTTGG+CGG 0.524799 4_4:-53371191 None:intergenic
TGCAATCATAACTAGTGAGT+TGG 0.525610 4_4:+53370411 Msa0688110:CDS
GACGAGTGGGAATCCGTGGC+AGG 0.527984 4_4:-53370472 None:intergenic
TCACAGGTTCTCAAGGACAT+AGG 0.529862 4_4:+53370604 Msa0688110:CDS
TTGCTCTTAGGAATTTGAGC+TGG 0.530381 4_4:+53371217 Msa0688110:CDS
CCCTTAAAACTCCCAATGGT+GGG 0.532372 4_4:-53371425 None:intergenic
CACCTACCAATGAAAGCTAC+AGG 0.535955 4_4:+53370326 Msa0688110:CDS
ACCCTTAAAACTCCCAATGG+TGG 0.537328 4_4:-53371426 None:intergenic
TGAAGAAGCTGCTCAGGCCA+AGG 0.537390 4_4:-53371342 None:intergenic
AGAATCTGAAGATGTTTCAC+AGG 0.541515 4_4:+53370588 Msa0688110:CDS
TCCAAGCAAAGTTAAGATCA+TGG 0.542194 4_4:+53371509 Msa0688110:CDS
TTATGCTTCTTCTTTAACCG+AGG 0.546831 4_4:-53370541 None:intergenic
AGGAGATAGAAACTTTGCAT+TGG 0.549596 4_4:-53369181 None:intergenic
TCTAAATTCCAAGTACTCAA+AGG 0.555958 4_4:+53371059 Msa0688110:CDS
AGATGTTTCACAGGTTCTCA+AGG 0.558948 4_4:+53370597 Msa0688110:CDS
CATAGGAATAATGTCGATTG+AGG 0.560971 4_4:+53370621 Msa0688110:CDS
AATCCATGCAGACGCAGGCA+AGG 0.561183 4_4:+53370791 Msa0688110:CDS
CCTAATCCAATTTAGAGTAG+TGG 0.563144 4_4:-53371319 None:intergenic
TTCTCACAGGTGTGAAAACA+GGG 0.567671 4_4:-53369248 None:intergenic
AAATTCAATGCCTGTGAATG+AGG 0.569144 4_4:+53370888 Msa0688110:CDS
TCGCTTGGCGGTCTTCATGA+CGG 0.569448 4_4:-53371179 None:intergenic
CAGTCTGAAACGAAAAGCAA+AGG 0.571815 4_4:+53370499 Msa0688110:CDS
AAACTCAGAAACTACAAGAC+AGG 0.574537 4_4:+53369083 Msa0688110:CDS
TTAAGATCATGGTTAATCCA+GGG 0.574929 4_4:+53371520 Msa0688110:CDS
CTGTGGATTTGTACCTGCAA+AGG 0.576366 4_4:-53371578 None:intergenic
TTCAGACTGAAACGACGAGT+GGG 0.579873 4_4:-53370485 None:intergenic
CGAGAATAGAGATGTGGCGT+TGG 0.582736 4_4:+53370672 Msa0688110:CDS
TTCTGGTTGTACGATACAAG+TGG 0.583451 4_4:-53370085 None:intergenic
ACTCACTAGTTATGATTGCA+GGG 0.584367 4_4:-53370408 None:intergenic
TTGTGGCTGCAAAGTGCATG+TGG 0.589553 4_4:+53371373 Msa0688110:CDS
TTCCATATAGCGATGATCAA+AGG 0.589637 4_4:-53371463 None:intergenic
CTAGTGAGTTGGAGAGTGCA+AGG 0.589873 4_4:+53370422 Msa0688110:CDS
CTTCATGCTGCTTTAATGCG+AGG 0.590460 4_4:+53369147 Msa0688110:CDS
TGGAATGAAGTACTGAGAAA+GGG 0.593329 4_4:+53371237 Msa0688110:CDS
CGAATGACGAGAATTTCGCT+TGG 0.594200 4_4:-53371194 None:intergenic
AGAAACAGAGCGTGAAACAG+AGG 0.597034 4_4:-53369205 None:intergenic
GATATGAGTCCAAGGTCACA+GGG 0.597366 4_4:+53371486 Msa0688110:CDS
ATCCATGCAGACGCAGGCAA+GGG 0.597592 4_4:+53370792 Msa0688110:CDS
ATCCACAGCCTAAATAAACT+AGG 0.598571 4_4:+53371593 Msa0688110:exon
GAAACAATCCATGCAGACGC+AGG 0.600891 4_4:+53370786 Msa0688110:CDS
TCAGTAATCTTCCTCAGAGA+GGG 0.603053 4_4:+53370842 Msa0688110:CDS
AATGAGGAAGTAATGATAGA+GGG 0.603683 4_4:+53370904 Msa0688110:CDS
AACCAGTGTACAAGATTACA+GGG 0.611795 4_4:+53370171 Msa0688110:CDS
CTCAGTAATCTTCCTCAGAG+AGG 0.618938 4_4:+53370841 Msa0688110:CDS
CTATCCTTAACATAAAACCC+TGG 0.620148 4_4:-53371537 None:intergenic
ACAGAGCGTGAAACAGAGGA+AGG 0.620860 4_4:-53369201 None:intergenic
ACATATGTGAGATTCTTGGT+TGG 0.621634 4_4:-53370239 None:intergenic
AAACGACGAGTGGGAATCCG+TGG 0.621697 4_4:-53370476 None:intergenic
TCAACCCTTAAAACTCCCAA+TGG 0.624174 4_4:-53371429 None:intergenic
TCAATTGATTTCCCTCTCTG+AGG 0.633408 4_4:-53370853 None:intergenic
ATATGGAAGATATGAGTCCA+AGG 0.637824 4_4:+53371478 Msa0688110:CDS
TTTCAGACTGAAACGACGAG+TGG 0.641833 4_4:-53370486 None:intergenic
AGCGAACGAGAATAGAGATG+TGG 0.657156 4_4:+53370666 Msa0688110:CDS
GGTTGCCATAGCCAAAGCAG+TGG 0.663368 4_4:+53369113 Msa0688110:CDS
ATATTGTTAGGCATTTCGTG+TGG 0.667524 4_4:-53370108 None:intergenic
TCTGGTTGTACGATACAAGT+GGG 0.669806 4_4:-53370084 None:intergenic
TCTTGGTTGGTAAAACCACA+AGG 0.671271 4_4:-53370226 None:intergenic
AAAGGGATACTACTACCTTG+TGG 0.671368 4_4:+53370211 Msa0688110:CDS
GTCTGAAACGAAAAGCAAAG+GGG 0.723496 4_4:+53370501 Msa0688110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATTATCACATAGATT+TGG - chr4_4:53371646-53371665 None:intergenic 15.0%
!! ATCAAGAAAATCAAAATTGA+AGG - chr4_4:53369285-53369304 None:intergenic 20.0%
!!! TTTTGATTTTCTTGATGAAA+AGG + chr4_4:53369289-53369308 Msa0688110:intron 20.0%
!!! TTTGATTTTCTTGATGAAAA+GGG + chr4_4:53369290-53369309 Msa0688110:intron 20.0%
!!! AAGAAAAGTTACTTTTGATT+TGG + chr4_4:53369358-53369377 Msa0688110:intron 20.0%
!! AGAATAAATAAGATAGAGAA+AGG - chr4_4:53369576-53369595 None:intergenic 20.0%
!!! TCATTGTCATGTAAATTTTA+AGG + chr4_4:53369652-53369671 Msa0688110:intron 20.0%
!! AGATAATAAACATCATCATT+AGG - chr4_4:53369718-53369737 None:intergenic 20.0%
!!! GCATTTTCTCAAATTATTAT+TGG - chr4_4:53369862-53369881 None:intergenic 20.0%
!!! TAAAAAGATTAATTTTGGAG+TGG - chr4_4:53369995-53370014 None:intergenic 20.0%
!! TTTCTAAACATGAGAATTAT+TGG + chr4_4:53370044-53370063 Msa0688110:intron 20.0%
!!! TTTCTTCAATGTTGTTTATA+AGG - chr4_4:53370984-53371003 None:intergenic 20.0%
!!! AATTGCATTTTTCAAAAGAA+CGG + chr4_4:53371138-53371157 Msa0688110:CDS 20.0%
! TTGTTACTGTTATCATTGAT+AGG + chr4_4:53369402-53369421 Msa0688110:intron 25.0%
! TGTTACTGTTATCATTGATA+GGG + chr4_4:53369403-53369422 Msa0688110:intron 25.0%
! ATTGCATATTCCATAAATTC+AGG - chr4_4:53369445-53369464 None:intergenic 25.0%
!! TCATAATTTGTGAGAATTAC+AGG - chr4_4:53369483-53369502 None:intergenic 25.0%
!! TTTATTCCTTGTTTATAGCT+TGG + chr4_4:53369505-53369524 Msa0688110:intron 25.0%
! AAACTTTAAACTCTCATTCT+AGG - chr4_4:53369612-53369631 None:intergenic 25.0%
! CTGAGAACAATTATAAAGTT+GGG - chr4_4:53369765-53369784 None:intergenic 25.0%
! TCTGAGAACAATTATAAAGT+TGG - chr4_4:53369766-53369785 None:intergenic 25.0%
! ATAAACCAAGTTCAAGAAAA+GGG + chr4_4:53370194-53370213 Msa0688110:CDS 25.0%
!! AGTTCAAATTTTCTGTCAAT+GGG - chr4_4:53371014-53371033 None:intergenic 25.0%
! GATTTATGAAAGCTTCAAAA+TGG - chr4_4:53371095-53371114 None:intergenic 25.0%
!!! TTTTGAAGCTTTCATAAATC+AGG + chr4_4:53371095-53371114 Msa0688110:CDS 25.0%
! ACATGTTTCCTAGTTTATTT+AGG - chr4_4:53371604-53371623 None:intergenic 25.0%
AACAGAGAAACAGAACAAAA+TGG - chr4_4:53369006-53369025 None:intergenic 30.0%
AACTACAAGACAGGAAATTA+AGG + chr4_4:53369092-53369111 Msa0688110:CDS 30.0%
TTCCATAAATTCAGGTACTT+CGG - chr4_4:53369437-53369456 None:intergenic 30.0%
TTTAAACTCTCATTCTAGGT+TGG - chr4_4:53369608-53369627 None:intergenic 30.0%
!!! TTAATTTTGGAGTGGAAGTT+GGG - chr4_4:53369987-53370006 None:intergenic 30.0%
!!! ATTAATTTTGGAGTGGAAGT+TGG - chr4_4:53369988-53370007 None:intergenic 30.0%
CCTAACAATATCTGAAAGTT+GGG + chr4_4:53370120-53370139 Msa0688110:CDS 30.0%
GATAAACCAAGTTCAAGAAA+AGG + chr4_4:53370193-53370212 Msa0688110:CDS 30.0%
TAAGAGAAGAAACAGTTTAG+AGG + chr4_4:53370351-53370370 Msa0688110:CDS 30.0%
AATGAGGAAGTAATGATAGA+GGG + chr4_4:53370904-53370923 Msa0688110:CDS 30.0%
! GAGTTCAAATTTTCTGTCAA+TGG - chr4_4:53371015-53371034 None:intergenic 30.0%
GAATTTAGAGACAGCTTATA+CGG - chr4_4:53371048-53371067 None:intergenic 30.0%
TCTAAATTCCAAGTACTCAA+AGG + chr4_4:53371059-53371078 Msa0688110:CDS 30.0%
AAATGCAATTCTCAAAGTCT+TGG - chr4_4:53371128-53371147 None:intergenic 30.0%
TTAAGATCATGGTTAATCCA+GGG + chr4_4:53371520-53371539 Msa0688110:CDS 30.0%
!! TAATCCAGGGTTTTATGTTA+AGG + chr4_4:53371533-53371552 Msa0688110:CDS 30.0%
!! AGGGTTTTATGTTAAGGATA+GGG + chr4_4:53371539-53371558 Msa0688110:CDS 30.0%
! ATGTTAAGGATAGGGTATTA+AGG + chr4_4:53371547-53371566 Msa0688110:CDS 30.0%
TGTTTCTCTGTTCTGTTTCA+TGG + chr4_4:53369014-53369033 Msa0688110:exon 35.0%
! GTTTTCAAAGACAACAACAG+TGG + chr4_4:53369060-53369079 Msa0688110:CDS 35.0%
AAACTCAGAAACTACAAGAC+AGG + chr4_4:53369083-53369102 Msa0688110:CDS 35.0%
AGGAGATAGAAACTTTGCAT+TGG - chr4_4:53369184-53369203 None:intergenic 35.0%
GGAAAGAAAGAAATTCTCAC+AGG - chr4_4:53369264-53369283 None:intergenic 35.0%
! ATCCGAAGTACCTGAATTTA+TGG + chr4_4:53369432-53369451 Msa0688110:intron 35.0%
! TTCCTTGTTTATAGCTTGGT+TGG + chr4_4:53369509-53369528 Msa0688110:intron 35.0%
TACCAACCAAGCTATAAACA+AGG - chr4_4:53369514-53369533 None:intergenic 35.0%
TTAAATGTAACCACGTGTGT+TGG + chr4_4:53369887-53369906 Msa0688110:intron 35.0%
!!! TAATTTTGGAGTGGAAGTTG+GGG - chr4_4:53369986-53370005 None:intergenic 35.0%
ATATTGTTAGGCATTTCGTG+TGG - chr4_4:53370111-53370130 None:intergenic 35.0%
GCCTAACAATATCTGAAAGT+TGG + chr4_4:53370119-53370138 Msa0688110:CDS 35.0%
CCCAACTTTCAGATATTGTT+AGG - chr4_4:53370123-53370142 None:intergenic 35.0%
ATATCTGAAAGTTGGGATGA+AGG + chr4_4:53370127-53370146 Msa0688110:CDS 35.0%
AAACCAGTGTACAAGATTAC+AGG + chr4_4:53370170-53370189 Msa0688110:CDS 35.0%
AACCAGTGTACAAGATTACA+GGG + chr4_4:53370171-53370190 Msa0688110:CDS 35.0%
! AGTATCCCTTTTCTTGAACT+TGG - chr4_4:53370202-53370221 None:intergenic 35.0%
ACATATGTGAGATTCTTGGT+TGG - chr4_4:53370242-53370261 None:intergenic 35.0%
! TATATGATTTGCACAAGAGC+CGG - chr4_4:53370290-53370309 None:intergenic 35.0%
ACTCACTAGTTATGATTGCA+GGG - chr4_4:53370411-53370430 None:intergenic 35.0%
AACTCACTAGTTATGATTGC+AGG - chr4_4:53370412-53370431 None:intergenic 35.0%
TGCAATCATAACTAGTGAGT+TGG + chr4_4:53370411-53370430 Msa0688110:CDS 35.0%
! AGTCTGAAACGAAAAGCAAA+GGG + chr4_4:53370500-53370519 Msa0688110:CDS 35.0%
TTATGCTTCTTCTTTAACCG+AGG - chr4_4:53370544-53370563 None:intergenic 35.0%
TCTTCAGATTCTGCTCTATT+TGG - chr4_4:53370580-53370599 None:intergenic 35.0%
AGAATCTGAAGATGTTTCAC+AGG + chr4_4:53370588-53370607 Msa0688110:CDS 35.0%
! CATAGGAATAATGTCGATTG+AGG + chr4_4:53370621-53370640 Msa0688110:CDS 35.0%
AAATTCAATGCCTGTGAATG+AGG + chr4_4:53370888-53370907 Msa0688110:CDS 35.0%
ATCATTACTTCCTCATTCAC+AGG - chr4_4:53370901-53370920 None:intergenic 35.0%
GAATGAGGAAGTAATGATAG+AGG + chr4_4:53370903-53370922 Msa0688110:CDS 35.0%
! CATGACGGTCAATGAATTTT+GGG - chr4_4:53371167-53371186 None:intergenic 35.0%
! TCATGACGGTCAATGAATTT+TGG - chr4_4:53371168-53371187 None:intergenic 35.0%
!! TGGAATGAAGTACTGAGAAA+GGG + chr4_4:53371237-53371256 Msa0688110:CDS 35.0%
GCATTACCACTACTCTAAAT+TGG + chr4_4:53371313-53371332 Msa0688110:CDS 35.0%
! CCTAATCCAATTTAGAGTAG+TGG - chr4_4:53371322-53371341 None:intergenic 35.0%
CCACTACTCTAAATTGGATT+AGG + chr4_4:53371319-53371338 Msa0688110:CDS 35.0%
! ATTTTCTTTCAACCCACCAT+TGG + chr4_4:53371413-53371432 Msa0688110:CDS 35.0%
! TTTTCTTTCAACCCACCATT+GGG + chr4_4:53371414-53371433 Msa0688110:CDS 35.0%
AACCTTTGATCATCGCTATA+TGG + chr4_4:53371461-53371480 Msa0688110:CDS 35.0%
TTCCATATAGCGATGATCAA+AGG - chr4_4:53371466-53371485 None:intergenic 35.0%
ATATGGAAGATATGAGTCCA+AGG + chr4_4:53371478-53371497 Msa0688110:CDS 35.0%
TCCAAGCAAAGTTAAGATCA+TGG + chr4_4:53371509-53371528 Msa0688110:CDS 35.0%
ACCATGATCTTAACTTTGCT+TGG - chr4_4:53371513-53371532 None:intergenic 35.0%
GTTAAGATCATGGTTAATCC+AGG + chr4_4:53371519-53371538 Msa0688110:CDS 35.0%
CTATCCTTAACATAAAACCC+TGG - chr4_4:53371540-53371559 None:intergenic 35.0%
!! CAGGGTTTTATGTTAAGGAT+AGG + chr4_4:53371538-53371557 Msa0688110:CDS 35.0%
ATCCACAGCCTAAATAAACT+AGG + chr4_4:53371593-53371612 Msa0688110:exon 35.0%
TTCCTAGTTTATTTAGGCTG+TGG - chr4_4:53371598-53371617 None:intergenic 35.0%
TTCTCACAGGTGTGAAAACA+GGG - chr4_4:53369251-53369270 None:intergenic 40.0%
ATTCTCACAGGTGTGAAAAC+AGG - chr4_4:53369252-53369271 None:intergenic 40.0%
GAATTCTGAACTGAATCCTG+TGG + chr4_4:53369686-53369705 Msa0688110:intron 40.0%
CATCATTAGGAATTTGCCAC+AGG - chr4_4:53369705-53369724 None:intergenic 40.0%
TCATGAGTCAGTATTGTGTC+CGG - chr4_4:53369836-53369855 None:intergenic 40.0%
ACACCTTCAACCTAAAGTGT+CGG + chr4_4:53369947-53369966 Msa0688110:intron 40.0%
TCTGGTTGTACGATACAAGT+GGG - chr4_4:53370087-53370106 None:intergenic 40.0%
! TTCTGGTTGTACGATACAAG+TGG - chr4_4:53370088-53370107 None:intergenic 40.0%
ATCCCTGTAATCTTGTACAC+TGG - chr4_4:53370176-53370195 None:intergenic 40.0%
AAAGGGATACTACTACCTTG+TGG + chr4_4:53370211-53370230 Msa0688110:CDS 40.0%
!! TCTTGGTTGGTAAAACCACA+AGG - chr4_4:53370229-53370248 None:intergenic 40.0%
!! TACGGATTTGGTGTCATCAA+CGG - chr4_4:53370266-53370285 None:intergenic 40.0%
CTTACTCCTGTAGCTTTCAT+TGG - chr4_4:53370335-53370354 None:intergenic 40.0%
TGCAGGGTTACATTTATTGC+AGG - chr4_4:53370395-53370414 None:intergenic 40.0%
! CAATATTGTTGTTCCTGCCA+CGG + chr4_4:53370459-53370478 Msa0688110:CDS 40.0%
! CAGTCTGAAACGAAAAGCAA+AGG + chr4_4:53370499-53370518 Msa0688110:CDS 40.0%
! GTCTGAAACGAAAAGCAAAG+GGG + chr4_4:53370501-53370520 Msa0688110:CDS 40.0%
! TGATTTCGTGGTTGTTTCCT+CGG + chr4_4:53370524-53370543 Msa0688110:CDS 40.0%
AGATGTTTCACAGGTTCTCA+AGG + chr4_4:53370597-53370616 Msa0688110:CDS 40.0%
!! TTCTGAGATGCGATGTTCAT+TGG + chr4_4:53370702-53370721 Msa0688110:CDS 40.0%
! TCTGAGATGCGATGTTCATT+GGG + chr4_4:53370703-53370722 Msa0688110:CDS 40.0%
TCAGTAATCTTCCTCAGAGA+GGG + chr4_4:53370842-53370861 Msa0688110:CDS 40.0%
! TCAATTGATTTCCCTCTCTG+AGG - chr4_4:53370856-53370875 None:intergenic 40.0%
CAGAGAGGGAAATCAATTGA+TGG + chr4_4:53370856-53370875 Msa0688110:CDS 40.0%
TTGCTCTTAGGAATTTGAGC+TGG + chr4_4:53371217-53371236 Msa0688110:CDS 40.0%
!! CTGGAATGAAGTACTGAGAA+AGG + chr4_4:53371236-53371255 Msa0688110:CDS 40.0%
! CTCTAAATTGGATTAGGCCT+TGG + chr4_4:53371325-53371344 Msa0688110:CDS 40.0%
GCTTCTTCAAGCTTTCTTTG+TGG + chr4_4:53371356-53371375 Msa0688110:CDS 40.0%
TCAACCCTTAAAACTCCCAA+TGG - chr4_4:53371432-53371451 None:intergenic 40.0%
! GGATAGGGTATTAAGGTGTA+AGG + chr4_4:53371554-53371573 Msa0688110:CDS 40.0%
TAGTTCCACTGCTTTGGCTA+TGG - chr4_4:53369121-53369140 None:intergenic 45.0%
AGCTCTTAGTTCCACTGCTT+TGG - chr4_4:53369127-53369146 None:intergenic 45.0%
!! CTTCATGCTGCTTTAATGCG+AGG + chr4_4:53369147-53369166 Msa0688110:CDS 45.0%
AGAAACAGAGCGTGAAACAG+AGG - chr4_4:53369208-53369227 None:intergenic 45.0%
GAAGAGCAGACACAAAACAC+CGG + chr4_4:53369814-53369833 Msa0688110:intron 45.0%
!! AGACCGACACTTTAGGTTGA+AGG - chr4_4:53369953-53369972 None:intergenic 45.0%
AGTGGAAGTTGGGGAATTAC+AGG - chr4_4:53369977-53369996 None:intergenic 45.0%
TTAGGCATTTCGTGTGGTTC+TGG - chr4_4:53370105-53370124 None:intergenic 45.0%
CGGGACATATGTGAGATTCT+TGG - chr4_4:53370246-53370265 None:intergenic 45.0%
!! ACGGATTTGGTGTCATCAAC+GGG - chr4_4:53370265-53370284 None:intergenic 45.0%
GATGACACCAAATCCGTAAC+CGG + chr4_4:53370268-53370287 Msa0688110:CDS 45.0%
ATTTGCACAAGAGCCGGTTA+CGG - chr4_4:53370284-53370303 None:intergenic 45.0%
CACCTACCAATGAAAGCTAC+AGG + chr4_4:53370326-53370345 Msa0688110:CDS 45.0%
CTCCTGTAGCTTTCATTGGT+AGG - chr4_4:53370331-53370350 None:intergenic 45.0%
CGTGGCAGGAACAACAATAT+TGG - chr4_4:53370461-53370480 None:intergenic 45.0%
TTCAGACTGAAACGACGAGT+GGG - chr4_4:53370488-53370507 None:intergenic 45.0%
TTTCAGACTGAAACGACGAG+TGG - chr4_4:53370489-53370508 None:intergenic 45.0%
AAAGCAAAGGGGTGATTTCG+TGG + chr4_4:53370512-53370531 Msa0688110:CDS 45.0%
TCACAGGTTCTCAAGGACAT+AGG + chr4_4:53370604-53370623 Msa0688110:CDS 45.0%
AGCGAACGAGAATAGAGATG+TGG + chr4_4:53370666-53370685 Msa0688110:CDS 45.0%
! GAGACAGAAGATGGAGTACT+TGG + chr4_4:53370732-53370751 Msa0688110:CDS 45.0%
CTCAGTAATCTTCCTCAGAG+AGG + chr4_4:53370841-53370860 Msa0688110:CDS 45.0%
CAGAACTGCCTTTGAGTACT+TGG - chr4_4:53371070-53371089 None:intergenic 45.0%
ATGACGAGAATTTCGCTTGG+CGG - chr4_4:53371194-53371213 None:intergenic 45.0%
CGAATGACGAGAATTTCGCT+TGG - chr4_4:53371197-53371216 None:intergenic 45.0%
TCTCGTCATTCGTTGCTCTT+AGG + chr4_4:53371205-53371224 Msa0688110:CDS 45.0%
AAAGCTTGAAGAAGCTGCTC+AGG - chr4_4:53371351-53371370 None:intergenic 45.0%
! ACCCACCATTGGGAGTTTTA+AGG + chr4_4:53371424-53371443 Msa0688110:CDS 45.0%
CCCTTAAAACTCCCAATGGT+GGG - chr4_4:53371428-53371447 None:intergenic 45.0%
!! CCCACCATTGGGAGTTTTAA+GGG + chr4_4:53371425-53371444 Msa0688110:CDS 45.0%
ACCCTTAAAACTCCCAATGG+TGG - chr4_4:53371429-53371448 None:intergenic 45.0%
AGATATGAGTCCAAGGTCAC+AGG + chr4_4:53371485-53371504 Msa0688110:CDS 45.0%
GATATGAGTCCAAGGTCACA+GGG + chr4_4:53371486-53371505 Msa0688110:CDS 45.0%
TAAGGTGTAAGGTCCTTTGC+AGG + chr4_4:53371565-53371584 Msa0688110:CDS 45.0%
CTGTGGATTTGTACCTGCAA+AGG - chr4_4:53371581-53371600 None:intergenic 45.0%
!!! AAAATTAAAAAGATTAATTT+TGG - chr4_4:53370000-53370019 None:intergenic 5.0%
!!! TAATTTTTTTTTTATTTTGA+TGG + chr4_4:53370013-53370032 Msa0688110:intron 5.0%
ACAGAGCGTGAAACAGAGGA+AGG - chr4_4:53369204-53369223 None:intergenic 50.0%
!! CACGTGTGTTGGTGTTGTGT+CGG + chr4_4:53369898-53369917 Msa0688110:intron 50.0%
TACAGGCAGACCGACACTTT+AGG - chr4_4:53369960-53369979 None:intergenic 50.0%
AGTTGGGATGAAGGAGAGTC+AGG + chr4_4:53370136-53370155 Msa0688110:CDS 50.0%
ACAAGAGCCGGTTACGGATT+TGG - chr4_4:53370278-53370297 None:intergenic 50.0%
! CTAGTGAGTTGGAGAGTGCA+AGG + chr4_4:53370422-53370441 Msa0688110:CDS 50.0%
CGAGAATAGAGATGTGGCGT+TGG + chr4_4:53370672-53370691 Msa0688110:CDS 50.0%
! GAATAGAGATGTGGCGTTGG+TGG + chr4_4:53370675-53370694 Msa0688110:CDS 50.0%
GGGAGAGTTGAGACAGAAGA+TGG + chr4_4:53370723-53370742 Msa0688110:CDS 50.0%
GAAACAATCCATGCAGACGC+AGG + chr4_4:53370786-53370805 Msa0688110:CDS 50.0%
TTGTGGCTGCAAAGTGCATG+TGG + chr4_4:53371373-53371392 Msa0688110:CDS 50.0%
GGTTGCCATAGCCAAAGCAG+TGG + chr4_4:53369113-53369132 Msa0688110:CDS 55.0%
CGACACAACACCAACACACG+TGG - chr4_4:53369900-53369919 None:intergenic 55.0%
GCCTGACACATGTCAGACGT+CGG + chr4_4:53369922-53369941 Msa0688110:intron 55.0%
TCCGACGTCTGACATGTGTC+AGG - chr4_4:53369926-53369945 None:intergenic 55.0%
AAACGACGAGTGGGAATCCG+TGG - chr4_4:53370479-53370498 None:intergenic 55.0%
AATCCATGCAGACGCAGGCA+AGG + chr4_4:53370791-53370810 Msa0688110:CDS 55.0%
ATCCATGCAGACGCAGGCAA+GGG + chr4_4:53370792-53370811 Msa0688110:CDS 55.0%
TCGCTTGGCGGTCTTCATGA+CGG - chr4_4:53371182-53371201 None:intergenic 55.0%
TGAAGAAGCTGCTCAGGCCA+AGG - chr4_4:53371345-53371364 None:intergenic 55.0%
TTGCTTGGACCCTGTGACCT+TGG - chr4_4:53371498-53371517 None:intergenic 55.0%
ATCCCTTGCCTGCGTCTGCA+TGG - chr4_4:53370797-53370816 None:intergenic 60.0%
GACGAGTGGGAATCCGTGGC+AGG - chr4_4:53370475-53370494 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 53368963 53371745 53368963 ID=Msa0688110;Name=Msa0688110
chr4_4 mRNA 53368963 53371745 53368963 ID=Msa0688110-mRNA-1;Parent=Msa0688110;Name=Msa0688110-mRNA-1;_AED=0.00;_eAED=0.00;_QI=70|1|1|1|1|1|2|140|588
chr4_4 exon 53368963 53369263 53368963 ID=Msa0688110-mRNA-1:exon:14121;Parent=Msa0688110-mRNA-1
chr4_4 exon 53370070 53371745 53370070 ID=Msa0688110-mRNA-1:exon:14122;Parent=Msa0688110-mRNA-1
chr4_4 five_prime_UTR 53368963 53369032 53368963 ID=Msa0688110-mRNA-1:five_prime_utr;Parent=Msa0688110-mRNA-1
chr4_4 CDS 53369033 53369263 53369033 ID=Msa0688110-mRNA-1:cds;Parent=Msa0688110-mRNA-1
chr4_4 CDS 53370070 53371605 53370070 ID=Msa0688110-mRNA-1:cds;Parent=Msa0688110-mRNA-1
chr4_4 three_prime_UTR 53371606 53371745 53371606 ID=Msa0688110-mRNA-1:three_prime_utr;Parent=Msa0688110-mRNA-1
Gene Sequence

>Msa0688110

ATGGCTGCAACAAATACTTCAACACAAGTTTTCAAAGACAACAACAGTGGAAACTCAGAAACTACAAGACAGGAAATTAAGGTTGCCATAGCCAAAGCAGTGGAACTAAGAGCTCTTCATGCTGCTTTAATGCGAGGAAATAGCTCAACCAATGCAAAGTTTCTATCTCCTTCCTCTGTTTCACGCTCTGTTTCTCAGTTCTCTGCTCATGATTACCCTGTTTTCACACCTAGTTATGAAGATGACCCACTTGTATCGTACAACCAGAACCACACGAAATGCCTAACAATATCTGAAAGTTGGGATGAAGGAGAGTCAGGAAACAGCATAGAAACCAGTGTACAAGATTACAGGGATAAACCAAGTTCAAGAAAAGGGATACTACTACCTTGTGGTTTTACCAACCAAGAATCTCACATATGTCCCGTTGATGACACCAAATCCGTAACCGGCTCTTGTGCAAATCATATAACTGTTCTTCAAACATCACCTACCAATGAAAGCTACAGGAGTAAGAGAAGAAACAGTTTAGAGGATTCTAAATCAGTGTCATCCTGCAATAAATGTAACCCTGCAATCATAACTAGTGAGTTGGAGAGTGCAAGGAACAGCAAGAGCTCCAATATTGTTGTTCCTGCCACGGATTCCCACTCGTCGTTTCAGTCTGAAACGAAAAGCAAAGGGGTGATTTCGTGGTTGTTTCCTCGGTTAAAGAAGAAGCATAAGAATGAGAATTCTCCAAATAGAGCAGAATCTGAAGATGTTTCACAGGTTCTCAAGGACATAGGAATAATGTCGATTGAGGCATTGAAGAAAGAGTTGATAGAAGCGAACGAGAATAGAGATGTGGCGTTGGTGGAAGTTTCTGAGATGCGATGTTCATTGGGAGAGTTGAGACAGAAGATGGAGTACTTGGAGAATTACTGTGAAGAGCTGAAGAAAGCTTTGAAACAATCCATGCAGACGCAGGCAAGGGATTCTCAACTTTGTGAACAGATTAAGCTCAGTAATCTTCCTCAGAGAGGGAAATCAATTGATGGAAATGATGAAAATTCAATGCCTGTGAATGAGGAAGTAATGATAGAGGGATTTTTGCAGATAGTGTCAGAGTCAAGATTATCAGTGAAGCAGTTCTGTAAGAACCTTATAAACAACATTGAAGAAACTGATCACCCATTGACAGAAAATTTGAACTCGCTTCTTCAACCGTATAAGCTGTCTCTAAATTCCAAGTACTCAAAGGCAGTTCTGTACCATTTTGAAGCTTTCATAAATCAGGCTCTCTACCAAGACTTTGAGAATTGCATTTTTCAAAAGAACGGATGCCCAAAATTCATTGACCGTCATGAAGACCGCCAAGCGAAATTCTCGTCATTCGTTGCTCTTAGGAATTTGAGCTGGAATGAAGTACTGAGAAAGGGAACAAAATATTACAGTGAAGAGTTTAGCAAGTTTTGTGATCAGAAAATGAGTTGCATTACCACTACTCTAAATTGGATTAGGCCTTGGCCTGAGCAGCTTCTTCAAGCTTTCTTTGTGGCTGCAAAGTGCATGTGGTTGCTACATTTGCTTGCATTTTCTTTCAACCCACCATTGGGAGTTTTAAGGGTTGAAGAGAATAGAACCTTTGATCATCGCTATATGGAAGATATGAGTCCAAGGTCACAGGGTCCAAGCAAAGTTAAGATCATGGTTAATCCAGGGTTTTATGTTAAGGATAGGGTATTAAGGTGTAAGGTCCTTTGCAGGTACAAATCCACAGCCTAA

Protein sequence

>Msa0688110

MAATNTSTQVFKDNNSGNSETTRQEIKVAIAKAVELRALHAALMRGNSSTNAKFLSPSSVSRSVSQFSAHDYPVFTPSYEDDPLVSYNQNHTKCLTISESWDEGESGNSIETSVQDYRDKPSSRKGILLPCGFTNQESHICPVDDTKSVTGSCANHITVLQTSPTNESYRSKRRNSLEDSKSVSSCNKCNPAIITSELESARNSKSSNIVVPATDSHSSFQSETKSKGVISWLFPRLKKKHKNENSPNRAESEDVSQVLKDIGIMSIEALKKELIEANENRDVALVEVSEMRCSLGELRQKMEYLENYCEELKKALKQSMQTQARDSQLCEQIKLSNLPQRGKSIDGNDENSMPVNEEVMIEGFLQIVSESRLSVKQFCKNLINNIEETDHPLTENLNSLLQPYKLSLNSKYSKAVLYHFEAFINQALYQDFENCIFQKNGCPKFIDRHEDRQAKFSSFVALRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCITTTLNWIRPWPEQLLQAFFVAAKCMWLLHLLAFSFNPPLGVLRVEENRTFDHRYMEDMSPRSQGPSKVKIMVNPGFYVKDRVLRCKVLCRYKSTA*