Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501770 | XP_013459848.1 | 99.180 | 244 | 2 | 0 | 1 | 244 | 1 | 244 | 0.0 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501770 | sp|O94903|PLPHP_HUMAN | 50.806 | 248 | 110 | 7 | 7 | 243 | 9 | 255 | 1.51e-71 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501770 | A0A072UVQ6 | 99.180 | 244 | 2 | 0 | 1 | 244 | 1 | 244 | 0.0 | 505 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005190 | Msa0501770 | 0.822163 | 2.743899e-53 | -8.615850e-47 |
| Msa0008700 | Msa0501770 | 0.810505 | 1.114820e-50 | -8.615850e-47 |
| Msa0017980 | Msa0501770 | 0.807560 | 4.762643e-50 | -8.615850e-47 |
| Msa0032990 | Msa0501770 | 0.802382 | 5.760738e-49 | -8.615850e-47 |
| Msa0036990 | Msa0501770 | 0.829722 | 4.389970e-55 | -8.615850e-47 |
| Msa0079100 | Msa0501770 | 0.808056 | 3.735628e-50 | -8.615850e-47 |
| Msa0092390 | Msa0501770 | 0.829316 | 5.512046e-55 | -8.615850e-47 |
| Msa0097730 | Msa0501770 | 0.801007 | 1.103227e-48 | -8.615850e-47 |
| Msa0098960 | Msa0501770 | 0.851885 | 6.631627e-61 | -8.615850e-47 |
| Msa0121080 | Msa0501770 | 0.800427 | 1.448520e-48 | -8.615850e-47 |
| Msa0135400 | Msa0501770 | 0.818087 | 2.353419e-52 | -8.615850e-47 |
| Msa0146110 | Msa0501770 | 0.815070 | 1.116053e-51 | -8.615850e-47 |
| Msa0199160 | Msa0501770 | 0.800515 | 1.390322e-48 | -8.615850e-47 |
| Msa0208710 | Msa0501770 | 0.806873 | 6.656629e-50 | -8.615850e-47 |
| Msa0211600 | Msa0501770 | 0.856666 | 2.757816e-62 | -8.615850e-47 |
| Msa0413230 | Msa0501770 | 0.813842 | 2.085773e-51 | -8.615850e-47 |
| Msa0453610 | Msa0501770 | 0.866986 | 1.907888e-65 | -8.615850e-47 |
| Msa0252160 | Msa0501770 | 0.810371 | 1.191406e-50 | -8.615850e-47 |
| Msa0290600 | Msa0501770 | 0.811085 | 8.349327e-51 | -8.615850e-47 |
| Msa0309670 | Msa0501770 | 0.822817 | 1.933919e-53 | -8.615850e-47 |
| Msa0317360 | Msa0501770 | 0.833343 | 5.631732e-56 | -8.615850e-47 |
| Msa0330240 | Msa0501770 | 0.800863 | 1.180171e-48 | -8.615850e-47 |
| Msa0501770 | Msa0504640 | 0.800102 | 1.687306e-48 | -8.615850e-47 |
| Msa0501770 | Msa0532750 | 0.801319 | 9.525867e-49 | -8.615850e-47 |
| Msa0501770 | Msa0550760 | 0.820201 | 7.774428e-53 | -8.615850e-47 |
| Msa0501770 | Msa0575460 | 0.804412 | 2.187494e-49 | -8.615850e-47 |
| Msa0501770 | Msa0581490 | 0.802280 | 6.046247e-49 | -8.615850e-47 |
| Msa0501770 | Msa0597300 | 0.833364 | 5.564234e-56 | -8.615850e-47 |
| Msa0501770 | Msa0604000 | 0.808789 | 2.606103e-50 | -8.615850e-47 |
| Msa0501770 | Msa0606380 | 0.822866 | 1.883188e-53 | -8.615850e-47 |
| Msa0501770 | Msa0616000 | 0.825139 | 5.517419e-54 | -8.615850e-47 |
| Msa0501770 | Msa0625900 | 0.806465 | 8.117484e-50 | -8.615850e-47 |
| Msa0501770 | Msa0644220 | 0.832391 | 9.708330e-56 | -8.615850e-47 |
| Msa0501770 | Msa0655360 | 0.843069 | 1.757831e-58 | -8.615850e-47 |
| Msa0501770 | Msa0657820 | 0.808720 | 2.695629e-50 | -8.615850e-47 |
| Msa0501770 | Msa0658280 | 0.846431 | 2.181897e-59 | -8.615850e-47 |
| Msa0501770 | Msa0663690 | 0.803096 | 4.102786e-49 | -8.615850e-47 |
| Msa0501770 | Msa0707270 | 0.801449 | 8.959443e-49 | -8.615850e-47 |
| Msa0501770 | Msa0745010 | 0.803852 | 2.859745e-49 | -8.615850e-47 |
| Msa0501770 | Msa0765190 | 0.829034 | 6.452611e-55 | -8.615850e-47 |
| Msa0501770 | Msa0774360 | 0.811283 | 7.565916e-51 | -8.615850e-47 |
| Msa0501770 | Msa0807950 | 0.801311 | 9.559785e-49 | -8.615850e-47 |
| Msa0501770 | Msa0876030 | 0.822749 | 2.005830e-53 | -8.615850e-47 |
| Msa0501770 | Msa0902810 | 0.830345 | 3.095178e-55 | -8.615850e-47 |
| Msa0501770 | Msa0917630 | 0.808290 | 3.331199e-50 | -8.615850e-47 |
| Msa0501770 | Msa0928060 | 0.810392 | 1.179137e-50 | -8.615850e-47 |
| Msa0501770 | Msa0928840 | 0.819280 | 1.261871e-52 | -8.615850e-47 |
| Msa0501770 | Msa0975440 | 0.828025 | 1.130931e-54 | -8.615850e-47 |
| Msa0501770 | Msa1039860 | 0.817182 | 3.765285e-52 | -8.615850e-47 |
| Msa0501770 | Msa1056790 | 0.810349 | 1.204497e-50 | -8.615850e-47 |
| Msa0501770 | Msa1084210 | 0.800676 | 1.289131e-48 | -8.615850e-47 |
| Msa0501770 | Msa1093250 | 0.804928 | 1.707023e-49 | -8.615850e-47 |
| Msa0501770 | Msa1121290 | 0.819716 | 1.003515e-52 | -8.615850e-47 |
| Msa0501770 | Msa1150130 | 0.824256 | 8.905384e-54 | -8.615850e-47 |
| Msa0501770 | Msa1156480 | 0.813727 | 2.210610e-51 | -8.615850e-47 |
| Msa0501770 | Msa1158540 | 0.806152 | 9.449192e-50 | -8.615850e-47 |
| Msa0501770 | Msa1206500 | 0.803557 | 3.293142e-49 | -8.615850e-47 |
| Msa0501770 | Msa1228600 | 0.801430 | 9.038040e-49 | -8.615850e-47 |
| Msa0501770 | Msa1288380 | 0.805471 | 1.313561e-49 | -8.615850e-47 |
| Msa0501770 | Msa1313690 | 0.813606 | 2.350311e-51 | -8.615850e-47 |
| Msa0501770 | Msa1338600 | 0.814522 | 1.475859e-51 | -8.615850e-47 |
| Msa0501770 | Msa1346220 | 0.823263 | 1.522086e-53 | -8.615850e-47 |
| Msa0501770 | Msa1346340 | 0.822501 | 2.290617e-53 | -8.615850e-47 |
| Msa0501770 | Msa1368150 | 0.841640 | 4.202675e-58 | -8.615850e-47 |
| Msa0501770 | Msa1393550 | 0.821116 | 4.789585e-53 | -8.615850e-47 |
| Msa0501770 | Msa1426310 | 0.821974 | 3.034968e-53 | -8.615850e-47 |
| Msa0501770 | Msa1430630 | 0.801720 | 7.882066e-49 | -8.615850e-47 |
| Msa0501770 | Msa1455180 | 0.832914 | 7.203340e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501770 | MtrunA17_Chr3g0099621 | 99.180 | 244 | 2 | 0 | 1 | 244 | 1 | 244 | 0.0 | 505 |
| Msa0501770 | MtrunA17_Chr2g0288961 | 65.164 | 244 | 83 | 1 | 1 | 244 | 1 | 242 | 1.28e-119 | 340 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0501770 | AT4G26860.1 | 75.720 | 243 | 58 | 1 | 1 | 243 | 1 | 242 | 9.78e-140 | 392 |
| Msa0501770 | AT4G26860.2 | 72.727 | 253 | 58 | 2 | 1 | 243 | 1 | 252 | 1.52e-136 | 384 |
| Msa0501770 | AT1G11930.2 | 73.333 | 240 | 62 | 1 | 6 | 243 | 16 | 255 | 8.12e-130 | 367 |
| Msa0501770 | AT1G11930.1 | 72.727 | 242 | 62 | 2 | 6 | 243 | 16 | 257 | 7.59e-128 | 362 |
Find 99 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTGGGTCAACAATATT+TGG | 0.176506 | 3_4:-43317434 | Msa0501770:CDS |
| CCCTCTACCATGGCCAAATT+TGG | 0.185635 | 3_4:+43320468 | None:intergenic |
| CATGGAAATGGGTTTGGTTT+TGG | 0.200720 | 3_4:+43322060 | None:intergenic |
| TGCAGGCGGAGTTCCAAATT+TGG | 0.235525 | 3_4:-43320481 | Msa0501770:intron |
| GAGCTTTCTCAACGATTTCT+TGG | 0.267769 | 3_4:+43321987 | None:intergenic |
| CTCAACTCCGCAGAACTTTC+GGG | 0.271171 | 3_4:-43318875 | Msa0501770:intron |
| GACGCTGGTCATAGAGTCTT+TGG | 0.279588 | 3_4:-43322022 | Msa0501770:CDS |
| AAGCATACTCAGAAGTGTTT+TGG | 0.293617 | 3_4:+43321053 | None:intergenic |
| CTTCAGTCCTGCAATTTGAT+AGG | 0.293960 | 3_4:+43318661 | None:intergenic |
| CCTCAACTCCGCAGAACTTT+CGG | 0.295923 | 3_4:-43318876 | Msa0501770:CDS |
| TCTTACAGATTGCTTGTTCA+TGG | 0.299912 | 3_4:-43317153 | Msa0501770:three_prime_UTR |
| ATCTTCAAAATACTATTTGC+AGG | 0.306015 | 3_4:-43317005 | Msa0501770:three_prime_UTR |
| CGGATCTTTCCGCCGCTTGT+TGG | 0.314049 | 3_4:+43322119 | None:intergenic |
| ACAAGCAACACAGAATAAAA+TGG | 0.317289 | 3_4:+43322257 | None:intergenic |
| AAGAAATCGTCTGAGGGTTT+TGG | 0.327681 | 3_4:-43320108 | Msa0501770:CDS |
| GGTAGTACTAATGTGAGAAT+TGG | 0.335377 | 3_4:-43317449 | Msa0501770:CDS |
| GATATTCAGTGGCACTTCAT+TGG | 0.337723 | 3_4:-43321096 | Msa0501770:CDS |
| GATTGCTTGTTCATGGTACT+TGG | 0.342639 | 3_4:-43317146 | Msa0501770:three_prime_UTR |
| TCCAAATTTGGCCATGGTAG+AGG | 0.346805 | 3_4:-43320469 | Msa0501770:CDS |
| AAGCAGACATGCTTAGATTA+TGG | 0.351186 | 3_4:-43317347 | Msa0501770:three_prime_UTR |
| TACCATTGTAATTGATGTAA+TGG | 0.355022 | 3_4:-43317293 | Msa0501770:three_prime_UTR |
| AACTCGATCGGGTTTAGTTC+CGG | 0.356458 | 3_4:+43322099 | None:intergenic |
| CGTGACTATTCTTAATAATC+TGG | 0.359128 | 3_4:-43316971 | Msa0501770:three_prime_UTR |
| GGAAGGATCAACACCAGATT+TGG | 0.364216 | 3_4:+43318987 | None:intergenic |
| AAGCCAGAGAATTCTAAGTT+TGG | 0.370526 | 3_4:+43318925 | None:intergenic |
| AAACACTAGTTACAATTGTT+TGG | 0.375904 | 3_4:+43317039 | None:intergenic |
| GAACTAAACCCGATCGAGTT+CGG | 0.386699 | 3_4:-43322096 | Msa0501770:CDS |
| AATAAAACACAATACCATTC+AGG | 0.389063 | 3_4:+43317315 | None:intergenic |
| AACTAAACCCGATCGAGTTC+GGG | 0.394096 | 3_4:-43322095 | Msa0501770:CDS |
| CCCTCAGACGATTTCTTCCC+AGG | 0.401232 | 3_4:+43320114 | None:intergenic |
| TGTAGACCCTATCAAATTGC+AGG | 0.402948 | 3_4:-43318668 | Msa0501770:intron |
| GCGAATCATGGAAATGGGTT+TGG | 0.406661 | 3_4:+43322054 | None:intergenic |
| AGTTTGCAAGGCACTTGAAA+TGG | 0.408160 | 3_4:-43318640 | Msa0501770:CDS |
| AATATTGTTGCAGCCAAATC+TGG | 0.415629 | 3_4:-43319000 | Msa0501770:intron |
| ACGCTGGTCATAGAGTCTTT+GGG | 0.415706 | 3_4:-43322021 | Msa0501770:CDS |
| GAGTTGGCGAATCATGGAAA+TGG | 0.416981 | 3_4:+43322048 | None:intergenic |
| ATATTCAGTGGCACTTCATT+GGG | 0.425650 | 3_4:-43321095 | Msa0501770:CDS |
| GGAGCAATGTGAACTGTCAA+TGG | 0.426611 | 3_4:-43318613 | Msa0501770:CDS |
| CAACAAGCGGCGGAAAGATC+CGG | 0.431700 | 3_4:-43322118 | Msa0501770:CDS |
| TTTATAAATAGCATCCAGTT+AGG | 0.437688 | 3_4:+43316913 | None:intergenic |
| TGACCGTATGGTTTCAAACC+TGG | 0.441164 | 3_4:-43320132 | Msa0501770:CDS |
| GGCAAATAACCTTGACCGTA+TGG | 0.454246 | 3_4:-43320144 | Msa0501770:CDS |
| TGTCCAAACTTAGAATTCTC+TGG | 0.463779 | 3_4:-43318928 | Msa0501770:CDS |
| GTCATAGAGTTGGCGAATCA+TGG | 0.468873 | 3_4:+43322042 | None:intergenic |
| TTCTCTGGCTTAATGACAAT+AGG | 0.469053 | 3_4:-43318913 | Msa0501770:CDS |
| AGTTGGCGAATCATGGAAAT+GGG | 0.484870 | 3_4:+43322049 | None:intergenic |
| GAACTGTCAATGGGCATGTC+TGG | 0.485338 | 3_4:-43318603 | Msa0501770:CDS |
| GTAGTACTAATGTGAGAATT+GGG | 0.489318 | 3_4:-43317448 | Msa0501770:CDS |
| TTCAGTCCTGCAATTTGATA+GGG | 0.493507 | 3_4:+43318662 | None:intergenic |
| AGATGGTCACTGTGTAATAA+TGG | 0.494911 | 3_4:+43317073 | None:intergenic |
| CCAAATTTGGCCATGGTAGA+GGG | 0.498295 | 3_4:-43320468 | Msa0501770:CDS |
| GCAACGACCCGAACTCGATC+GGG | 0.502938 | 3_4:+43322088 | None:intergenic |
| GAACTTACATTCTTCTCCAC+TGG | 0.504248 | 3_4:+43320073 | None:intergenic |
| GGTGGTGTGTTTGTCTGTTG+AGG | 0.506548 | 3_4:+43322227 | None:intergenic |
| TGCGGAGTTGAGGTATAGTC+TGG | 0.506981 | 3_4:+43318886 | None:intergenic |
| ACCAATGACATCTCCGGTGA+TGG | 0.514487 | 3_4:-43322188 | Msa0501770:exon |
| TTTGGCCATGGTAGAGGGCG+TGG | 0.514870 | 3_4:-43320463 | Msa0501770:CDS |
| GCAGCTGCTTCCGCCATCAC+CGG | 0.520200 | 3_4:+43322175 | None:intergenic |
| TGTTCATGGTACTTGGAAAG+AGG | 0.521464 | 3_4:-43317139 | Msa0501770:three_prime_UTR |
| AATCGTTGAGAAAGCTCCTC+AGG | 0.525653 | 3_4:-43321981 | Msa0501770:intron |
| TTTCCGCCGCTTGTTGGACA+CGG | 0.529093 | 3_4:+43322125 | None:intergenic |
| TGCAACGACCCGAACTCGAT+CGG | 0.532215 | 3_4:+43322087 | None:intergenic |
| TTCCCAGGTTTGAAACCATA+CGG | 0.534502 | 3_4:+43320129 | None:intergenic |
| TCTTCAAAATACTATTTGCA+GGG | 0.536371 | 3_4:-43317004 | Msa0501770:three_prime_UTR |
| TCTTCCACCAATGACATCTC+CGG | 0.537309 | 3_4:-43322194 | Msa0501770:intron |
| GCCATCACCGGAGATGTCAT+TGG | 0.538406 | 3_4:+43322187 | None:intergenic |
| GGTGTGTTTGTCTGTTGAGG+TGG | 0.538756 | 3_4:+43322230 | None:intergenic |
| CCGAAAGTTCTGCGGAGTTG+AGG | 0.549382 | 3_4:+43318876 | None:intergenic |
| CGCTGGTCATAGAGTCTTTG+GGG | 0.550567 | 3_4:-43322020 | Msa0501770:CDS |
| GAGCAATGTGAACTGTCAAT+GGG | 0.553747 | 3_4:-43318612 | Msa0501770:CDS |
| CGGAGTTCCAAATTTGGCCA+TGG | 0.557054 | 3_4:-43320475 | Msa0501770:CDS |
| GACCGTATGGTTTCAAACCT+GGG | 0.557992 | 3_4:-43320131 | Msa0501770:CDS |
| TATGGCACAGATCTCCTGAA+TGG | 0.561303 | 3_4:-43317329 | Msa0501770:three_prime_UTR |
| GTTCATGGTACTTGGAAAGA+GGG | 0.565902 | 3_4:-43317138 | Msa0501770:three_prime_UTR |
| CAAGGCACTTGAAATGGACG+AGG | 0.572444 | 3_4:-43318634 | Msa0501770:CDS |
| ATTCGCCAACTCTATGACGC+TGG | 0.577025 | 3_4:-43322037 | Msa0501770:CDS |
| TGGTACTTGGAAAGAGGGAA+AGG | 0.578391 | 3_4:-43317133 | Msa0501770:three_prime_UTR |
| GGTTTGAAACCATACGGTCA+AGG | 0.578649 | 3_4:+43320135 | None:intergenic |
| TTGCAGGACTGAAGTTTGCA+AGG | 0.579031 | 3_4:-43318652 | Msa0501770:CDS |
| TACTGATCGGAAAGCTAAGA+CGG | 0.579948 | 3_4:+43322153 | None:intergenic |
| TATGACCAGCGTCATAGAGT+TGG | 0.589921 | 3_4:+43322032 | None:intergenic |
| ATTGTCCACGCCCTCTACCA+TGG | 0.592629 | 3_4:+43320458 | None:intergenic |
| GCAAGATCAACACAATCGGA+AGG | 0.593111 | 3_4:+43318970 | None:intergenic |
| CCTGGGAAGAAATCGTCTGA+GGG | 0.593514 | 3_4:-43320114 | Msa0501770:CDS |
| ACCTGGGAAGAAATCGTCTG+AGG | 0.602661 | 3_4:-43320115 | Msa0501770:CDS |
| AATGACATCTCCGGTGATGG+CGG | 0.614760 | 3_4:-43322185 | Msa0501770:CDS |
| GGTACTTGGAAAGAGGGAAA+GGG | 0.617711 | 3_4:-43317132 | Msa0501770:three_prime_UTR |
| CAGATTATTAAGAATAGTCA+CGG | 0.624546 | 3_4:+43316972 | None:intergenic |
| AGAGGGCGTGGACAATCAGA+AGG | 0.625830 | 3_4:-43320451 | Msa0501770:intron |
| GTCCATTACATCAATTACAA+TGG | 0.626162 | 3_4:+43317291 | None:intergenic |
| TAGACAGAGGAAGAAAGAGA+TGG | 0.643797 | 3_4:+43317370 | None:intergenic |
| AAGTGCCACTGAATATCTTG+CGG | 0.648199 | 3_4:+43321102 | None:intergenic |
| AGCATGTCTGCTTTAGACAG+AGG | 0.654730 | 3_4:+43317357 | None:intergenic |
| AGCTTCCGCAAGATATTCAG+TGG | 0.656965 | 3_4:-43321107 | Msa0501770:CDS |
| GGACACGGAGCATTACTGAT+CGG | 0.662757 | 3_4:+43322140 | None:intergenic |
| AATGCTCCGTGTCCAACAAG+CGG | 0.669810 | 3_4:-43322131 | Msa0501770:CDS |
| TTGGTGCAAGTAAATACCAG+TGG | 0.675365 | 3_4:-43320089 | Msa0501770:CDS |
| GCTCCGTGTCCAACAAGCGG+CGG | 0.683370 | 3_4:-43322128 | Msa0501770:CDS |
| ACTATTACCCGAAAGTTCTG+CGG | 0.684747 | 3_4:+43318868 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTACAAATAATTTTTAAGT+AGG | - | chr3_4:43317543-43317562 | Msa0501770:intron | 10.0% |
| !!! | TTTGTCAATTTCTTAATTTT+AGG | - | chr3_4:43317856-43317875 | Msa0501770:intron | 15.0% |
| !!! | TTGTCAATTTCTTAATTTTA+GGG | - | chr3_4:43317857-43317876 | Msa0501770:intron | 15.0% |
| !! | TAAATATGTTTCTTGTTAAT+TGG | - | chr3_4:43318168-43318187 | Msa0501770:intron | 15.0% |
| !!! | CATTTATTCTAAGTTATTTT+AGG | + | chr3_4:43318448-43318467 | None:intergenic | 15.0% |
| !! | TTTAATTATATTCTGACTTA+TGG | + | chr3_4:43319706-43319725 | None:intergenic | 15.0% |
| !! | TAATAGAAAAGTAAACAATA+TGG | + | chr3_4:43320034-43320053 | None:intergenic | 15.0% |
| !!! | TTTACTTTTCTATTATGTAT+TGG | - | chr3_4:43320039-43320058 | Msa0501770:intron | 15.0% |
| !!! | ATTTTTTAGAATCATTACAT+TGG | - | chr3_4:43320395-43320414 | Msa0501770:intron | 15.0% |
| !! | CAAATTATTAGTGAAAAAAT+AGG | - | chr3_4:43320887-43320906 | Msa0501770:intron | 15.0% |
| !! | TCATATTATCATATAATGCT+TGG | - | chr3_4:43317413-43317432 | Msa0501770:CDS | 20.0% |
| !!! | TCTTTTAGCAATATTTTTAG+TGG | - | chr3_4:43317488-43317507 | Msa0501770:intron | 20.0% |
| !!! | ATAATTTTAGGGACAAATTT+GGG | - | chr3_4:43317898-43317917 | Msa0501770:intron | 20.0% |
| !!! | AAGTTCTAATAATTTGGTTT+TGG | - | chr3_4:43318019-43318038 | Msa0501770:intron | 20.0% |
| !!! | AGTTCTAATAATTTGGTTTT+GGG | - | chr3_4:43318020-43318039 | Msa0501770:intron | 20.0% |
| !! | AACATCCTTCATATTTATAA+AGG | - | chr3_4:43318581-43318600 | Msa0501770:intron | 20.0% |
| !! | TAACTCCTTTATAAATATGA+AGG | + | chr3_4:43318589-43318608 | None:intergenic | 20.0% |
| !!! | TTTAGTATTTTCTGTTGATA+AGG | - | chr3_4:43318864-43318883 | Msa0501770:intron | 20.0% |
| !! | ATAAATAACCAAATACAACA+AGG | + | chr3_4:43319141-43319160 | None:intergenic | 20.0% |
| !! | TTGTATTTGGTTATTTATGA+GGG | - | chr3_4:43319143-43319162 | Msa0501770:intron | 20.0% |
| !! | AAGTGATGTTAGTAAAATAT+AGG | - | chr3_4:43319272-43319291 | Msa0501770:intron | 20.0% |
| !! | TTAGTAAAATATAGGAAAGA+GGG | - | chr3_4:43319280-43319299 | Msa0501770:intron | 20.0% |
| !!! | CTTTTCTATTAGAACTATAA+AGG | - | chr3_4:43319395-43319414 | Msa0501770:intron | 20.0% |
| !!! | GAGAGATTTATCTTTTTTTT+AGG | - | chr3_4:43319427-43319446 | Msa0501770:intron | 20.0% |
| !! | ATTATCTATTTAGACATGTA+AGG | + | chr3_4:43320125-43320144 | None:intergenic | 20.0% |
| !! | CTTGAAATATCTGATAATTA+TGG | - | chr3_4:43320668-43320687 | Msa0501770:intron | 20.0% |
| !!! | TACCATCTTTTTTAGAATAA+GGG | + | chr3_4:43320918-43320937 | None:intergenic | 20.0% |
| !! | ATGTATATTTGAAAATGACT+TGG | - | chr3_4:43321262-43321281 | Msa0501770:intron | 20.0% |
| !! | TAACTAACCATATATTCAAA+CGG | - | chr3_4:43321418-43321437 | Msa0501770:intron | 20.0% |
| !! | AAAAAAAGTTTTCATACCTG+AGG | + | chr3_4:43317199-43317218 | None:intergenic | 25.0% |
| ! | ACGTAATTCAGTATAATCAT+AGG | + | chr3_4:43317346-43317365 | None:intergenic | 25.0% |
| ! | ACGAAAAAATTGTTTGCATA+AGG | - | chr3_4:43317591-43317610 | Msa0501770:intron | 25.0% |
| ! | AAATTGTTTGCATAAGGTTT+AGG | - | chr3_4:43317597-43317616 | Msa0501770:intron | 25.0% |
| !! | TAATTTGAAATATTCGCCAA+TGG | - | chr3_4:43317783-43317802 | Msa0501770:intron | 25.0% |
| ! | ACAATTTACAATTTCAGAGA+CGG | - | chr3_4:43317832-43317851 | Msa0501770:intron | 25.0% |
| !! | TTGCTAGCAAACATAATTTT+AGG | - | chr3_4:43317886-43317905 | Msa0501770:intron | 25.0% |
| !! | TGCTAGCAAACATAATTTTA+GGG | - | chr3_4:43317887-43317906 | Msa0501770:intron | 25.0% |
| !!! | CATAATTTTAGGGACAAATT+TGG | - | chr3_4:43317897-43317916 | Msa0501770:intron | 25.0% |
| !!! | TAATTTTAGGGACAAATTTG+GGG | - | chr3_4:43317899-43317918 | Msa0501770:intron | 25.0% |
| !! | GCTGTAAAGTTCTAATAATT+TGG | - | chr3_4:43318013-43318032 | Msa0501770:intron | 25.0% |
| !!! | GTTCTAATAATTTGGTTTTG+GGG | - | chr3_4:43318021-43318040 | Msa0501770:intron | 25.0% |
| !!! | GTTTTTTTTGTAGTTTCACT+AGG | - | chr3_4:43318208-43318227 | Msa0501770:intron | 25.0% |
| ! | TAGGATGTTCAATAAAAATG+TGG | - | chr3_4:43318227-43318246 | Msa0501770:intron | 25.0% |
| !! | CATTTATAAGTGCTTGATTT+TGG | - | chr3_4:43318379-43318398 | Msa0501770:intron | 25.0% |
| ! | ATAAAGGAGATACTCTATAT+AGG | + | chr3_4:43318407-43318426 | None:intergenic | 25.0% |
| !!! | ACTAAGTTGATTATCTAAAC+AGG | - | chr3_4:43318472-43318491 | Msa0501770:intron | 25.0% |
| ! | AGTATAAAAATCAGAAACAG+TGG | + | chr3_4:43318548-43318567 | None:intergenic | 25.0% |
| ! | TTCTTTATCATCCTTATAGT+AGG | - | chr3_4:43318630-43318649 | Msa0501770:CDS | 25.0% |
| ! | GTTGTGCTCAATTATAATTT+AGG | - | chr3_4:43318840-43318859 | Msa0501770:intron | 25.0% |
| !! | ATTCCTTTTAGATAACTAGT+TGG | - | chr3_4:43318890-43318909 | Msa0501770:CDS | 25.0% |
| ! | TAAAGGTTTGTCAAATGATA+TGG | + | chr3_4:43318966-43318985 | None:intergenic | 25.0% |
| ! | GTTGTATTTGGTTATTTATG+AGG | - | chr3_4:43319142-43319161 | Msa0501770:intron | 25.0% |
| ! | GTTAGTAAAATATAGGAAAG+AGG | - | chr3_4:43319279-43319298 | Msa0501770:intron | 25.0% |
| ! | GTGACCAATTATGTTATAAA+TGG | - | chr3_4:43319345-43319364 | Msa0501770:intron | 25.0% |
| ! | CACACCATTTATAACATAAT+TGG | + | chr3_4:43319352-43319371 | None:intergenic | 25.0% |
| ! | TCTATTAGAACTATAAAGGT+TGG | - | chr3_4:43319399-43319418 | Msa0501770:intron | 25.0% |
| ! | CTATTAGAACTATAAAGGTT+GGG | - | chr3_4:43319400-43319419 | Msa0501770:intron | 25.0% |
| !! | ATATATTCTCCTCTTATTTG+AGG | - | chr3_4:43319516-43319535 | Msa0501770:intron | 25.0% |
| ! | TTTGTCTATCAAAATAAGAG+AGG | + | chr3_4:43319736-43319755 | None:intergenic | 25.0% |
| !! | AGTGATTATGTTAGTTTCTA+AGG | - | chr3_4:43319768-43319787 | Msa0501770:intron | 25.0% |
| !!! | TAGTTATATTCTAAAGCATG+TGG | - | chr3_4:43320312-43320331 | Msa0501770:intron | 25.0% |
| ! | ATAATATGAACTCAAGAAAC+AGG | + | chr3_4:43320355-43320374 | None:intergenic | 25.0% |
| !! | ATCTGATAATTATGGTCTTA+TGG | - | chr3_4:43320676-43320695 | Msa0501770:intron | 25.0% |
| ! | TTAGTTATGTCATGATAGAT+CGG | - | chr3_4:43320838-43320857 | Msa0501770:intron | 25.0% |
| !!! | CTACCATCTTTTTTAGAATA+AGG | + | chr3_4:43320919-43320938 | None:intergenic | 25.0% |
| !! | ATGTGTTTTACTTTCCTTAT+TGG | + | chr3_4:43320992-43321011 | None:intergenic | 25.0% |
| ! | AACAAAATTTGACGACAATT+TGG | - | chr3_4:43321057-43321076 | Msa0501770:intron | 25.0% |
| ! | GTTAATGCAATTCAAATACA+TGG | - | chr3_4:43321083-43321102 | Msa0501770:CDS | 25.0% |
| !!! | GTGTTATGTTGATGATAAAT+AGG | + | chr3_4:43321156-43321175 | None:intergenic | 25.0% |
| ! | ATCTATGACATTCAAAATTG+TGG | + | chr3_4:43321193-43321212 | None:intergenic | 25.0% |
| !! | ATATTTGAAAATGACTTGGA+TGG | - | chr3_4:43321266-43321285 | Msa0501770:intron | 25.0% |
| ! | ACTATCATGGTTCAAAATTA+TGG | - | chr3_4:43321326-43321345 | Msa0501770:intron | 25.0% |
| !! | ATATGGTTAGTTACATTAAG+TGG | + | chr3_4:43321411-43321430 | None:intergenic | 25.0% |
| ! | GATTCATGAATCATATCTAA+AGG | + | chr3_4:43321563-43321582 | None:intergenic | 25.0% |
| ! | AATAAAACACAATACCATTC+AGG | + | chr3_4:43321849-43321868 | None:intergenic | 25.0% |
| ! | TACCATTGTAATTGATGTAA+TGG | - | chr3_4:43321868-43321887 | Msa0501770:intron | 25.0% |
| ! | GAAATAATCACTTTCATAGT+TGG | - | chr3_4:43321931-43321950 | Msa0501770:intron | 25.0% |
| !!! | TTTTCTATGTAGTTTGTTCT+TGG | + | chr3_4:43321965-43321984 | None:intergenic | 25.0% |
| ! | AAACACTAGTTACAATTGTT+TGG | + | chr3_4:43322125-43322144 | None:intergenic | 25.0% |
| ! | ATCTTCAAAATACTATTTGC+AGG | - | chr3_4:43322156-43322175 | Msa0501770:CDS | 25.0% |
| ! | TCTTCAAAATACTATTTGCA+GGG | - | chr3_4:43322157-43322176 | Msa0501770:CDS | 25.0% |
| ! | CAGATTATTAAGAATAGTCA+CGG | + | chr3_4:43322192-43322211 | None:intergenic | 25.0% |
| !!! | TTTATTTTTTGTCACCTAAC+TGG | - | chr3_4:43322234-43322253 | Msa0501770:five_prime_UTR | 25.0% |
| ! | TTTATAAATAGCATCCAGTT+AGG | + | chr3_4:43322251-43322270 | None:intergenic | 25.0% |
| ACAAGCAACACAGAATAAAA+TGG | + | chr3_4:43316907-43316926 | None:intergenic | 30.0% | |
| TGGTAAATGATAAAGATACG+AGG | - | chr3_4:43317508-43317527 | Msa0501770:intron | 30.0% | |
| !! | AATTTTAGGGACAAATTTGG+GGG | - | chr3_4:43317900-43317919 | Msa0501770:intron | 30.0% |
| ! | ACTAAACTCAAAGTATTCCA+AGG | + | chr3_4:43318253-43318272 | None:intergenic | 30.0% |
| ! | AGAAGTTGAAATCAGCTTTT+GGG | + | chr3_4:43318335-43318354 | None:intergenic | 30.0% |
| ! | AAGAAGTTGAAATCAGCTTT+TGG | + | chr3_4:43318336-43318355 | None:intergenic | 30.0% |
| CCAAAATCAAGCACTTATAA+AGG | + | chr3_4:43318382-43318401 | None:intergenic | 30.0% | |
| ! | CCTTTATAAGTGCTTGATTT+TGG | - | chr3_4:43318420-43318439 | Msa0501770:intron | 30.0% |
| !! | TTATCTAAACAGGTTCTAAG+TGG | - | chr3_4:43318482-43318501 | Msa0501770:intron | 30.0% |
| !! | AAAGGAGTTATCTTGTTGTT+TGG | - | chr3_4:43318599-43318618 | Msa0501770:CDS | 30.0% |
| GTTAACGTTAACCTACTATA+AGG | + | chr3_4:43318644-43318663 | None:intergenic | 30.0% | |
| ACCTAGATAAAATGATCTTC+AGG | - | chr3_4:43318818-43318837 | Msa0501770:intron | 30.0% | |
| ! | ACCTGAAGATCATTTTATCT+AGG | + | chr3_4:43318822-43318841 | None:intergenic | 30.0% |
| ACTCCAACTAGTTATCTAAA+AGG | + | chr3_4:43318896-43318915 | None:intergenic | 30.0% | |
| AGCTTATTGAAATCACAGTT+TGG | + | chr3_4:43318920-43318939 | None:intergenic | 30.0% | |
| GAAGTACAAGAACACTTTAA+AGG | + | chr3_4:43318983-43319002 | None:intergenic | 30.0% | |
| ! | CTCTAAATCCTTGTTGTATT+TGG | - | chr3_4:43319130-43319149 | Msa0501770:intron | 30.0% |
| AAAATATAGGAAAGAGGGAA+AGG | - | chr3_4:43319285-43319304 | Msa0501770:intron | 30.0% | |
| TATAAATGGTGTGAAAAGAG+AGG | - | chr3_4:43319359-43319378 | Msa0501770:intron | 30.0% | |
| ATAAATGGTGTGAAAAGAGA+GGG | - | chr3_4:43319360-43319379 | Msa0501770:intron | 30.0% | |
| AGATATGCAGAATATGTGAT+AGG | + | chr3_4:43319544-43319563 | None:intergenic | 30.0% | |
| AGTCACAACATACACAATAA+GGG | + | chr3_4:43319571-43319590 | None:intergenic | 30.0% | |
| AAGTCACAACATACACAATA+AGG | + | chr3_4:43319572-43319591 | None:intergenic | 30.0% | |
| TTCCTGACACTAAATTAAGA+AGG | + | chr3_4:43319645-43319664 | None:intergenic | 30.0% | |
| ACAATAACTTGGCAATAAGA+GGG | + | chr3_4:43319910-43319929 | None:intergenic | 30.0% | |
| TACAATAACTTGGCAATAAG+AGG | + | chr3_4:43319911-43319930 | None:intergenic | 30.0% | |
| TTATTGCCAAGTTATTGTAG+TGG | - | chr3_4:43319912-43319931 | Msa0501770:intron | 30.0% | |
| TAAAAGCCACTACAATAACT+TGG | + | chr3_4:43319921-43319940 | None:intergenic | 30.0% | |
| ATTCTTTGCAGATAATGACA+TGG | - | chr3_4:43319951-43319970 | Msa0501770:intron | 30.0% | |
| TAGTTCAACAGCTATTAGAT+TGG | - | chr3_4:43319993-43320012 | Msa0501770:intron | 30.0% | |
| ! | TTTTGCAAGATCAACACAAT+CGG | + | chr3_4:43320198-43320217 | None:intergenic | 30.0% |
| ! | ACTCTAATGTCTATTTGCTA+AGG | - | chr3_4:43320452-43320471 | Msa0501770:CDS | 30.0% |
| ! | AATGAATTGACTCCTAATAC+TGG | - | chr3_4:43320720-43320739 | Msa0501770:intron | 30.0% |
| AAAAATCCCATTCCAGTATT+AGG | + | chr3_4:43320735-43320754 | None:intergenic | 30.0% | |
| ! | AATACTGGAATGGGATTTTT+CGG | - | chr3_4:43320735-43320754 | Msa0501770:intron | 30.0% |
| ! | AGCCCTTATTCTAAAAAAGA+TGG | - | chr3_4:43320913-43320932 | Msa0501770:intron | 30.0% |
| CACATAGAAGATAGTCTAAT+AGG | - | chr3_4:43321007-43321026 | Msa0501770:intron | 30.0% | |
| AAATTTGACGACAATTTGGA+TGG | - | chr3_4:43321061-43321080 | Msa0501770:CDS | 30.0% | |
| ! | TGTCATAGATCGCAATTTTT+AGG | - | chr3_4:43321203-43321222 | Msa0501770:intron | 30.0% |
| TTATGGTTTATTACGTTCAG+TGG | - | chr3_4:43321343-43321362 | Msa0501770:intron | 30.0% | |
| GTTAACACCGTTTGAATATA+TGG | + | chr3_4:43321428-43321447 | None:intergenic | 30.0% | |
| TTTCTCATCTAATTGTTCAG+AGG | - | chr3_4:43321487-43321506 | Msa0501770:intron | 30.0% | |
| AGATGATTAAGGAAAACAGT+AGG | - | chr3_4:43321514-43321533 | Msa0501770:intron | 30.0% | |
| AGGCTAAAAATATAAGACCA+AGG | - | chr3_4:43321534-43321553 | Msa0501770:intron | 30.0% | |
| ATCATATCTAAAGGTTTCCT+TGG | + | chr3_4:43321554-43321573 | None:intergenic | 30.0% | |
| GTAGTACTAATGTGAGAATT+GGG | - | chr3_4:43321713-43321732 | Msa0501770:intron | 30.0% | |
| AGAATTGGGTCAACAATATT+TGG | - | chr3_4:43321727-43321746 | Msa0501770:intron | 30.0% | |
| !!! | TGTTTTTTTGCATACTCTCT+TGG | + | chr3_4:43321754-43321773 | None:intergenic | 30.0% |
| TGCAAAAAAACAATGATAGC+AGG | - | chr3_4:43321762-43321781 | Msa0501770:intron | 30.0% | |
| GTCCATTACATCAATTACAA+TGG | + | chr3_4:43321873-43321892 | None:intergenic | 30.0% | |
| CGTGACTATTCTTAATAATC+TGG | - | chr3_4:43322190-43322209 | Msa0501770:intron | 30.0% | |
| TTAAGTAGGTAGTTCGATTG+TGG | - | chr3_4:43317557-43317576 | Msa0501770:intron | 35.0% | |
| TTAAACGCAATCACATGAGT+TGG | + | chr3_4:43317701-43317720 | None:intergenic | 35.0% | |
| ! | TAATGAAGCTCTGACACATA+CGG | + | chr3_4:43317765-43317784 | None:intergenic | 35.0% |
| !!! | TGTGTTGTTTTTGTTCTGTC+TGG | - | chr3_4:43317991-43318010 | Msa0501770:intron | 35.0% |
| ATATTCAGTGGCACTTCATT+GGG | - | chr3_4:43318066-43318085 | Msa0501770:intron | 35.0% | |
| !!! | AAGCATACTCAGAAGTGTTT+TGG | + | chr3_4:43318111-43318130 | None:intergenic | 35.0% |
| GTTCAATAAAAATGTGGCCT+TGG | - | chr3_4:43318233-43318252 | Msa0501770:intron | 35.0% | |
| !!! | GGGCATGTCATTGTTTTTAT+AGG | + | chr3_4:43318315-43318334 | None:intergenic | 35.0% |
| TCCCAAGAAAAAGTTTATCC+CGG | + | chr3_4:43318508-43318527 | None:intergenic | 35.0% | |
| ! | TTCATATCTCTAAGAGCTAC+TGG | + | chr3_4:43318758-43318777 | None:intergenic | 35.0% |
| TTGTCAAATGATATGGCAAG+TGG | + | chr3_4:43318959-43318978 | None:intergenic | 35.0% | |
| TGTTCTTGTACTTCTGTAAC+TGG | - | chr3_4:43318989-43319008 | Msa0501770:CDS | 35.0% | |
| AATATGGGATCCTAACAGTA+TGG | + | chr3_4:43319198-43319217 | None:intergenic | 35.0% | |
| TAGGATCCCATATTTGAATG+TGG | - | chr3_4:43319204-43319223 | Msa0501770:intron | 35.0% | |
| AGGATCCCATATTTGAATGT+GGG | - | chr3_4:43319205-43319224 | Msa0501770:intron | 35.0% | |
| TTGCACCCACATTCAAATAT+GGG | + | chr3_4:43319213-43319232 | None:intergenic | 35.0% | |
| TTTGCACCCACATTCAAATA+TGG | + | chr3_4:43319214-43319233 | None:intergenic | 35.0% | |
| ATTTGAATGTGGGTGCAAAT+AGG | - | chr3_4:43319215-43319234 | Msa0501770:intron | 35.0% | |
| GGCATGCAAGAATTAACTAA+CGG | + | chr3_4:43319241-43319260 | None:intergenic | 35.0% | |
| ATTCTTGCATGCCTATTATG+TGG | - | chr3_4:43319248-43319267 | Msa0501770:intron | 35.0% | |
| TTCTTGCATGCCTATTATGT+GGG | - | chr3_4:43319249-43319268 | Msa0501770:intron | 35.0% | |
| AACATCACTTCCCACATAAT+AGG | + | chr3_4:43319262-43319281 | None:intergenic | 35.0% | |
| !! | TTTTTAGGAGCAATAGCTCT+TGG | - | chr3_4:43319442-43319461 | Msa0501770:intron | 35.0% |
| !! | TTTTAGGAGCAATAGCTCTT+GGG | - | chr3_4:43319443-43319462 | Msa0501770:intron | 35.0% |
| TGATAGGAACCTCAAATAAG+AGG | + | chr3_4:43319528-43319547 | None:intergenic | 35.0% | |
| ! | TCTGCATCACTGTAATTTTG+TGG | - | chr3_4:43319599-43319618 | Msa0501770:intron | 35.0% |
| AGCCTTCTTAATTTAGTGTC+AGG | - | chr3_4:43319640-43319659 | Msa0501770:intron | 35.0% | |
| GTCTATCAAAATAAGAGAGG+TGG | + | chr3_4:43319733-43319752 | None:intergenic | 35.0% | |
| !! | TTGAAGGAGTTTTAACCAAG+AGG | + | chr3_4:43319807-43319826 | None:intergenic | 35.0% |
| AATATTGTTGCAGCCAAATC+TGG | - | chr3_4:43320161-43320180 | Msa0501770:intron | 35.0% | |
| TGTCCAAACTTAGAATTCTC+TGG | - | chr3_4:43320233-43320252 | Msa0501770:intron | 35.0% | |
| AAGCCAGAGAATTCTAAGTT+TGG | + | chr3_4:43320239-43320258 | None:intergenic | 35.0% | |
| ! | TTCTCTGGCTTAATGACAAT+AGG | - | chr3_4:43320248-43320267 | Msa0501770:intron | 35.0% |
| !! | GAATCATTACATTGGTTTCG+TGG | - | chr3_4:43320403-43320422 | Msa0501770:intron | 35.0% |
| TTCAGTCCTGCAATTTGATA+GGG | + | chr3_4:43320502-43320521 | None:intergenic | 35.0% | |
| !!! | TGGATGCTTTTTAGCTCATA+AGG | - | chr3_4:43320696-43320715 | Msa0501770:intron | 35.0% |
| !!! | GGATGCTTTTTAGCTCATAA+GGG | - | chr3_4:43320697-43320716 | Msa0501770:intron | 35.0% |
| ! | ATTGACTCCTAATACTGGAA+TGG | - | chr3_4:43320725-43320744 | Msa0501770:intron | 35.0% |
| TTGACTCCTAATACTGGAAT+GGG | - | chr3_4:43320726-43320745 | Msa0501770:intron | 35.0% | |
| !! | CTGACTCGTTTTCTTTTCTA+AGG | - | chr3_4:43320807-43320826 | Msa0501770:intron | 35.0% |
| TGCACAAACTACATAAAACG+AGG | + | chr3_4:43320944-43320963 | None:intergenic | 35.0% | |
| TCCTTATTGGCACTTCTAAT+GGG | + | chr3_4:43320979-43320998 | None:intergenic | 35.0% | |
| TTCCTTATTGGCACTTCTAA+TGG | + | chr3_4:43320980-43320999 | None:intergenic | 35.0% | |
| AAGATAGTCTAATAGGAGCT+GGG | - | chr3_4:43321014-43321033 | Msa0501770:intron | 35.0% | |
| GATTGATCACTTGACTATCA+TGG | - | chr3_4:43321313-43321332 | Msa0501770:intron | 35.0% | |
| ! | GGTTAGTTACATTAAGTGGA+TGG | + | chr3_4:43321407-43321426 | None:intergenic | 35.0% |
| AAATCAACCAACACTTTGAC+TGG | + | chr3_4:43321450-43321469 | None:intergenic | 35.0% | |
| TCATCTAATTGTTCAGAGGT+AGG | - | chr3_4:43321491-43321510 | Msa0501770:intron | 35.0% | |
| GGTAGTACTAATGTGAGAAT+TGG | - | chr3_4:43321712-43321731 | Msa0501770:intron | 35.0% | |
| AAGCAGACATGCTTAGATTA+TGG | - | chr3_4:43321814-43321833 | Msa0501770:intron | 35.0% | |
| TCTTACAGATTGCTTGTTCA+TGG | - | chr3_4:43322008-43322027 | Msa0501770:CDS | 35.0% | |
| AGATGGTCACTGTGTAATAA+TGG | + | chr3_4:43322091-43322110 | None:intergenic | 35.0% | |
| !! | GTTTGGTTTCTTTTTGCAGA+TGG | + | chr3_4:43322108-43322127 | None:intergenic | 35.0% |
| TACTGATCGGAAAGCTAAGA+CGG | + | chr3_4:43317011-43317030 | None:intergenic | 40.0% | |
| !! | CATGGAAATGGGTTTGGTTT+TGG | + | chr3_4:43317104-43317123 | None:intergenic | 40.0% |
| AGTTGGCGAATCATGGAAAT+GGG | + | chr3_4:43317115-43317134 | None:intergenic | 40.0% | |
| GAGCTTTCTCAACGATTTCT+TGG | + | chr3_4:43317177-43317196 | None:intergenic | 40.0% | |
| TCCTCAGATTAGATGTGTCT+CGG | - | chr3_4:43317289-43317308 | Msa0501770:three_prime_UTR | 40.0% | |
| ACACCTTCGATCAGAAATGT+TGG | + | chr3_4:43317636-43317655 | None:intergenic | 40.0% | |
| TACGGACACTAAACATGAAC+TGG | + | chr3_4:43317747-43317766 | None:intergenic | 40.0% | |
| ATATTCGCCAATGGAAGTGA+TGG | - | chr3_4:43317792-43317811 | Msa0501770:intron | 40.0% | |
| ! | AAGTGCCACTGAATATCTTG+CGG | + | chr3_4:43318062-43318081 | None:intergenic | 40.0% |
| GATATTCAGTGGCACTTCAT+TGG | - | chr3_4:43318065-43318084 | Msa0501770:intron | 40.0% | |
| !! | GCCGGGATAAACTTTTTCTT+GGG | - | chr3_4:43318504-43318523 | Msa0501770:intron | 40.0% |
| ! | CTGTGCATGCTTTATTATGC+AGG | - | chr3_4:43318663-43318682 | Msa0501770:CDS | 40.0% |
| ! | TGCATGCTTTATTATGCAGG+CGG | - | chr3_4:43318666-43318685 | Msa0501770:CDS | 40.0% |
| ! | TTCCCAGGTTTGAAACCATA+CGG | + | chr3_4:43319035-43319054 | None:intergenic | 40.0% |
| ! | AAGAAATCGTCTGAGGGTTT+TGG | - | chr3_4:43319053-43319072 | Msa0501770:intron | 40.0% |
| TTGGTGCAAGTAAATACCAG+TGG | - | chr3_4:43319072-43319091 | Msa0501770:intron | 40.0% | |
| GAACTTACATTCTTCTCCAC+TGG | + | chr3_4:43319091-43319110 | None:intergenic | 40.0% | |
| ATTGCTCAACTCCTTCAACT+TGG | - | chr3_4:43319871-43319890 | Msa0501770:intron | 40.0% | |
| TTGCTCAACTCCTTCAACTT+GGG | - | chr3_4:43319872-43319891 | Msa0501770:intron | 40.0% | |
| AACTTGGCAATAAGAGGGAA+AGG | + | chr3_4:43319905-43319924 | None:intergenic | 40.0% | |
| ACTATTACCCGAAAGTTCTG+CGG | + | chr3_4:43320296-43320315 | None:intergenic | 40.0% | |
| TGTAGACCCTATCAAATTGC+AGG | - | chr3_4:43320493-43320512 | Msa0501770:intron | 40.0% | |
| CTTCAGTCCTGCAATTTGAT+AGG | + | chr3_4:43320503-43320522 | None:intergenic | 40.0% | |
| ! | AGTTTGCAAGGCACTTGAAA+TGG | - | chr3_4:43320521-43320540 | Msa0501770:intron | 40.0% |
| GAGCAATGTGAACTGTCAAT+GGG | - | chr3_4:43320549-43320568 | Msa0501770:intron | 40.0% | |
| GTTATGTCATGATAGATCGG+TGG | - | chr3_4:43320841-43320860 | Msa0501770:intron | 40.0% | |
| !! | ACCCATTAGAAGTGCCAATA+AGG | - | chr3_4:43320975-43320994 | Msa0501770:intron | 40.0% |
| GAAGATAGTCTAATAGGAGC+TGG | - | chr3_4:43321013-43321032 | Msa0501770:intron | 40.0% | |
| !!! | CTGGGTTATTTTAACGCAGT+GGG | - | chr3_4:43321032-43321051 | Msa0501770:intron | 40.0% |
| GTGTTAACCAGTCAAAGTGT+TGG | - | chr3_4:43321440-43321459 | Msa0501770:intron | 40.0% | |
| TCAGAGGTAGGAGATGATTA+AGG | - | chr3_4:43321503-43321522 | Msa0501770:intron | 40.0% | |
| ! | CTTGCCTTTTCAGATCGAAT+CGG | - | chr3_4:43321690-43321709 | Msa0501770:intron | 40.0% |
| ! | TTGCCTTTTCAGATCGAATC+GGG | - | chr3_4:43321691-43321710 | Msa0501770:intron | 40.0% |
| TAGACAGAGGAAGAAAGAGA+TGG | + | chr3_4:43321794-43321813 | None:intergenic | 40.0% | |
| GATTGCTTGTTCATGGTACT+TGG | - | chr3_4:43322015-43322034 | Msa0501770:CDS | 40.0% | |
| TGTTCATGGTACTTGGAAAG+AGG | - | chr3_4:43322022-43322041 | Msa0501770:CDS | 40.0% | |
| GTTCATGGTACTTGGAAAGA+GGG | - | chr3_4:43322023-43322042 | Msa0501770:CDS | 40.0% | |
| TTGGTGGAAGATGAGACAAG+TGG | + | chr3_4:43316958-43316977 | None:intergenic | 45.0% | |
| TCTTCCACCAATGACATCTC+CGG | - | chr3_4:43316967-43316986 | Msa0501770:three_prime_UTR | 45.0% | |
| ! | AACTCGATCGGGTTTAGTTC+CGG | + | chr3_4:43317065-43317084 | None:intergenic | 45.0% |
| GAACTAAACCCGATCGAGTT+CGG | - | chr3_4:43317065-43317084 | Msa0501770:three_prime_UTR | 45.0% | |
| AACTAAACCCGATCGAGTTC+GGG | - | chr3_4:43317066-43317085 | Msa0501770:three_prime_UTR | 45.0% | |
| ! | GCGAATCATGGAAATGGGTT+TGG | + | chr3_4:43317110-43317129 | None:intergenic | 45.0% |
| GAGTTGGCGAATCATGGAAA+TGG | + | chr3_4:43317116-43317135 | None:intergenic | 45.0% | |
| GTCATAGAGTTGGCGAATCA+TGG | + | chr3_4:43317122-43317141 | None:intergenic | 45.0% | |
| TATGACCAGCGTCATAGAGT+TGG | + | chr3_4:43317132-43317151 | None:intergenic | 45.0% | |
| ACGCTGGTCATAGAGTCTTT+GGG | - | chr3_4:43317140-43317159 | Msa0501770:three_prime_UTR | 45.0% | |
| AATCGTTGAGAAAGCTCCTC+AGG | - | chr3_4:43317180-43317199 | Msa0501770:three_prime_UTR | 45.0% | |
| ACCGAGACACATCTAATCTG+AGG | + | chr3_4:43317293-43317312 | None:intergenic | 45.0% | |
| AGTAGGTAGTTCGATTGTGG+AGG | - | chr3_4:43317560-43317579 | Msa0501770:intron | 45.0% | |
| ! | CGATCAGAAATGTTGGTGCT+AGG | + | chr3_4:43317629-43317648 | None:intergenic | 45.0% |
| GCACCAACATTTCTGATCGA+AGG | - | chr3_4:43317630-43317649 | Msa0501770:intron | 45.0% | |
| ! | TTTCTGATCGAAGGTGTGCT+TGG | - | chr3_4:43317639-43317658 | Msa0501770:intron | 45.0% |
| AGTTCCACCATCACTTCCAT+TGG | + | chr3_4:43317802-43317821 | None:intergenic | 45.0% | |
| AGCTTCCGCAAGATATTCAG+TGG | - | chr3_4:43318054-43318073 | Msa0501770:intron | 45.0% | |
| !! | CTAAACAGGTTCTAAGTGGC+CGG | - | chr3_4:43318486-43318505 | Msa0501770:intron | 45.0% |
| !! | TAAACAGGTTCTAAGTGGCC+GGG | - | chr3_4:43318487-43318506 | Msa0501770:intron | 45.0% |
| !! | GGCCGGGATAAACTTTTTCT+TGG | - | chr3_4:43318503-43318522 | Msa0501770:intron | 45.0% |
| TCCAAATTTGGCCATGGTAG+AGG | - | chr3_4:43318692-43318711 | Msa0501770:intron | 45.0% | |
| CCAAATTTGGCCATGGTAGA+GGG | - | chr3_4:43318693-43318712 | Msa0501770:intron | 45.0% | |
| CTTGTACTTCTGTAACTGGC+AGG | - | chr3_4:43318993-43319012 | Msa0501770:intron | 45.0% | |
| GGCAAATAACCTTGACCGTA+TGG | - | chr3_4:43319017-43319036 | Msa0501770:intron | 45.0% | |
| ! | GGTTTGAAACCATACGGTCA+AGG | + | chr3_4:43319029-43319048 | None:intergenic | 45.0% |
| TGACCGTATGGTTTCAAACC+TGG | - | chr3_4:43319029-43319048 | Msa0501770:intron | 45.0% | |
| GACCGTATGGTTTCAAACCT+GGG | - | chr3_4:43319030-43319049 | Msa0501770:intron | 45.0% | |
| ATGAGGGTTTCCAACATCCT+TGG | - | chr3_4:43319159-43319178 | Msa0501770:intron | 45.0% | |
| TGAGGGTTTCCAACATCCTT+GGG | - | chr3_4:43319160-43319179 | Msa0501770:intron | 45.0% | |
| TGTAGCTGAGCCATACTGTT+AGG | - | chr3_4:43319185-43319204 | Msa0501770:intron | 45.0% | |
| AGAGGGAAAGGATTATGACC+TGG | - | chr3_4:43319297-43319316 | Msa0501770:intron | 45.0% | |
| AAAGGATTATGACCTGGCAG+AGG | - | chr3_4:43319303-43319322 | Msa0501770:intron | 45.0% | |
| AGCAATAGCTCTTGGGTTAC+AGG | - | chr3_4:43319450-43319469 | Msa0501770:intron | 45.0% | |
| GCAATAGCTCTTGGGTTACA+GGG | - | chr3_4:43319451-43319470 | Msa0501770:intron | 45.0% | |
| !! | GGAGTTTTAACCAAGAGGTC+TGG | + | chr3_4:43319802-43319821 | None:intergenic | 45.0% |
| GATGAGCTGAGCAATGTTGA+AGG | + | chr3_4:43319823-43319842 | None:intergenic | 45.0% | |
| ! | GCAATGTTGATGAGCCAAGT+AGG | + | chr3_4:43319856-43319875 | None:intergenic | 45.0% |
| TGCTCAACTCCTTCAACTTG+GGG | - | chr3_4:43319873-43319892 | Msa0501770:intron | 45.0% | |
| GGAAGGATCAACACCAGATT+TGG | + | chr3_4:43320177-43320196 | None:intergenic | 45.0% | |
| GCAAGATCAACACAATCGGA+AGG | + | chr3_4:43320194-43320213 | None:intergenic | 45.0% | |
| GACATTAGAGTTCAGCATCG+AGG | + | chr3_4:43320443-43320462 | None:intergenic | 45.0% | |
| TTGCAGGACTGAAGTTTGCA+AGG | - | chr3_4:43320509-43320528 | Msa0501770:intron | 45.0% | |
| GGAGCAATGTGAACTGTCAA+TGG | - | chr3_4:43320548-43320567 | Msa0501770:intron | 45.0% | |
| !!! | GTCTGGCGATTTTGAGTTAG+CGG | - | chr3_4:43320575-43320594 | Msa0501770:intron | 45.0% |
| !!! | GCGATTTTGAGTTAGCGGTA+TGG | - | chr3_4:43320580-43320599 | Msa0501770:intron | 45.0% |
| !!! | GCTGGGTTATTTTAACGCAG+TGG | - | chr3_4:43321031-43321050 | Msa0501770:intron | 45.0% |
| ! | CTACCCGATTCGATCTGAAA+AGG | + | chr3_4:43321697-43321716 | None:intergenic | 45.0% |
| ! | AGCATGTCTGCTTTAGACAG+AGG | + | chr3_4:43321807-43321826 | None:intergenic | 45.0% |
| TATGGCACAGATCTCCTGAA+TGG | - | chr3_4:43321832-43321851 | Msa0501770:intron | 45.0% | |
| TGGTACTTGGAAAGAGGGAA+AGG | - | chr3_4:43322028-43322047 | Msa0501770:CDS | 45.0% | |
| GGTACTTGGAAAGAGGGAAA+GGG | - | chr3_4:43322029-43322048 | Msa0501770:CDS | 45.0% | |
| GGTGTGTTTGTCTGTTGAGG+TGG | + | chr3_4:43316934-43316953 | None:intergenic | 50.0% | |
| GGTGGTGTGTTTGTCTGTTG+AGG | + | chr3_4:43316937-43316956 | None:intergenic | 50.0% | |
| GTGGAAGATGAGACAAGTGG+TGG | + | chr3_4:43316955-43316974 | None:intergenic | 50.0% | |
| ATCACCGGAGATGTCATTGG+TGG | + | chr3_4:43316974-43316993 | None:intergenic | 50.0% | |
| ACCAATGACATCTCCGGTGA+TGG | - | chr3_4:43316973-43316992 | Msa0501770:three_prime_UTR | 50.0% | |
| ! | AATGACATCTCCGGTGATGG+CGG | - | chr3_4:43316976-43316995 | Msa0501770:three_prime_UTR | 50.0% |
| ! | GGACACGGAGCATTACTGAT+CGG | + | chr3_4:43317024-43317043 | None:intergenic | 50.0% |
| AATGCTCCGTGTCCAACAAG+CGG | - | chr3_4:43317030-43317049 | Msa0501770:three_prime_UTR | 50.0% | |
| ATTCGCCAACTCTATGACGC+TGG | - | chr3_4:43317124-43317143 | Msa0501770:three_prime_UTR | 50.0% | |
| GACGCTGGTCATAGAGTCTT+TGG | - | chr3_4:43317139-43317158 | Msa0501770:three_prime_UTR | 50.0% | |
| CGCTGGTCATAGAGTCTTTG+GGG | - | chr3_4:43317141-43317160 | Msa0501770:three_prime_UTR | 50.0% | |
| ! | TGATCGAAGGTGTGCTTGGT+TGG | - | chr3_4:43317643-43317662 | Msa0501770:intron | 50.0% |
| ! | TTGGTGTTTGCCACACGTGT+CGG | - | chr3_4:43317662-43317681 | Msa0501770:intron | 50.0% |
| TTCGCCAATGGAAGTGATGG+TGG | - | chr3_4:43317795-43317814 | Msa0501770:intron | 50.0% | |
| TGCAGGCGGAGTTCCAAATT+TGG | - | chr3_4:43318680-43318699 | Msa0501770:intron | 50.0% | |
| CGGAGTTCCAAATTTGGCCA+TGG | - | chr3_4:43318686-43318705 | Msa0501770:intron | 50.0% | |
| CCCTCTACCATGGCCAAATT+TGG | + | chr3_4:43318696-43318715 | None:intergenic | 50.0% | |
| GTACTTCTGTAACTGGCAGG+TGG | - | chr3_4:43318996-43319015 | Msa0501770:intron | 50.0% | |
| ACCTGGGAAGAAATCGTCTG+AGG | - | chr3_4:43319046-43319065 | Msa0501770:intron | 50.0% | |
| CCTGGGAAGAAATCGTCTGA+GGG | - | chr3_4:43319047-43319066 | Msa0501770:intron | 50.0% | |
| AGCTACATGCCCAAGGATGT+TGG | + | chr3_4:43319172-43319191 | None:intergenic | 50.0% | |
| TTATGACCTGGCAGAGGCTA+AGG | - | chr3_4:43319309-43319328 | Msa0501770:intron | 50.0% | |
| TATGACCTGGCAGAGGCTAA+GGG | - | chr3_4:43319310-43319329 | Msa0501770:intron | 50.0% | |
| GGTTAGTACTCCAGACCTCT+TGG | - | chr3_4:43319789-43319808 | Msa0501770:intron | 50.0% | |
| TGCGGAGTTGAGGTATAGTC+TGG | + | chr3_4:43320278-43320297 | None:intergenic | 50.0% | |
| CCTCAACTCCGCAGAACTTT+CGG | - | chr3_4:43320285-43320304 | Msa0501770:intron | 50.0% | |
| CTCAACTCCGCAGAACTTTC+GGG | - | chr3_4:43320286-43320305 | Msa0501770:intron | 50.0% | |
| ! | CAAGGCACTTGAAATGGACG+AGG | - | chr3_4:43320527-43320546 | Msa0501770:intron | 50.0% |
| GAACTGTCAATGGGCATGTC+TGG | - | chr3_4:43320558-43320577 | Msa0501770:intron | 50.0% | |
| GCCATCACCGGAGATGTCAT+TGG | + | chr3_4:43316977-43316996 | None:intergenic | 55.0% | |
| ! | TTTCCGCCGCTTGTTGGACA+CGG | + | chr3_4:43317039-43317058 | None:intergenic | 55.0% |
| CAACAAGCGGCGGAAAGATC+CGG | - | chr3_4:43317043-43317062 | Msa0501770:three_prime_UTR | 55.0% | |
| TGCAACGACCCGAACTCGAT+CGG | + | chr3_4:43317077-43317096 | None:intergenic | 55.0% | |
| !! | TCTCGGTGTCAGACACGCAT+CGG | - | chr3_4:43317306-43317325 | Msa0501770:three_prime_UTR | 55.0% |
| ATTGTCCACGCCCTCTACCA+TGG | + | chr3_4:43318706-43318725 | None:intergenic | 55.0% | |
| ! | AGAGGGCGTGGACAATCAGA+AGG | - | chr3_4:43318710-43318729 | Msa0501770:intron | 55.0% |
| CCCTCAGACGATTTCTTCCC+AGG | + | chr3_4:43319050-43319069 | None:intergenic | 55.0% | |
| ATGGCTCAGCTACATGCCCA+AGG | + | chr3_4:43319179-43319198 | None:intergenic | 55.0% | |
| CATCAACCGAGCTGCCTACT+TGG | - | chr3_4:43319839-43319858 | Msa0501770:intron | 55.0% | |
| GATGAGCCAAGTAGGCAGCT+CGG | + | chr3_4:43319848-43319867 | None:intergenic | 55.0% | |
| ! | AGGTGTGAGCCCCAAGTTGA+AGG | + | chr3_4:43319885-43319904 | None:intergenic | 55.0% |
| CCGAAAGTTCTGCGGAGTTG+AGG | + | chr3_4:43320288-43320307 | None:intergenic | 55.0% | |
| CGGATCTTTCCGCCGCTTGT+TGG | + | chr3_4:43317045-43317064 | None:intergenic | 60.0% | |
| GCAACGACCCGAACTCGATC+GGG | + | chr3_4:43317076-43317095 | None:intergenic | 60.0% | |
| GTGTCAGACACCGACACGTG+TGG | + | chr3_4:43317675-43317694 | None:intergenic | 60.0% | |
| TTTGGCCATGGTAGAGGGCG+TGG | - | chr3_4:43318698-43318717 | Msa0501770:intron | 60.0% | |
| GCAGCTGCTTCCGCCATCAC+CGG | + | chr3_4:43316989-43317008 | None:intergenic | 65.0% | |
| GCTCCGTGTCCAACAAGCGG+CGG | - | chr3_4:43317033-43317052 | Msa0501770:three_prime_UTR | 65.0% | |
| GTGCACCCTTAGCCTCTGCC+AGG | + | chr3_4:43319318-43319337 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 43316862 | 43322321 | 43316862 | ID=Msa0501770;Name=Msa0501770 |
| chr3_4 | mRNA | 43316862 | 43322321 | 43316862 | ID=Msa0501770-mRNA-1;Parent=Msa0501770;Name=Msa0501770-mRNA-1;_AED=0.03;_eAED=0.03;_QI=95|1|1|1|0.62|0.55|9|509|244 |
| chr3_4 | exon | 43316862 | 43317233 | 43316862 | ID=Msa0501770-mRNA-1:exon:9206;Parent=Msa0501770-mRNA-1 |
| chr3_4 | exon | 43317269 | 43317480 | 43317269 | ID=Msa0501770-mRNA-1:exon:9205;Parent=Msa0501770-mRNA-1 |
| chr3_4 | exon | 43318587 | 43318685 | 43318587 | ID=Msa0501770-mRNA-1:exon:9204;Parent=Msa0501770-mRNA-1 |
| chr3_4 | exon | 43318876 | 43319009 | 43318876 | ID=Msa0501770-mRNA-1:exon:9203;Parent=Msa0501770-mRNA-1 |
| chr3_4 | exon | 43320081 | 43320168 | 43320081 | ID=Msa0501770-mRNA-1:exon:9202;Parent=Msa0501770-mRNA-1 |
| chr3_4 | exon | 43320452 | 43320498 | 43320452 | ID=Msa0501770-mRNA-1:exon:9201;Parent=Msa0501770-mRNA-1 |
| chr3_4 | exon | 43321061 | 43321127 | 43321061 | ID=Msa0501770-mRNA-1:exon:9200;Parent=Msa0501770-mRNA-1 |
| chr3_4 | exon | 43321982 | 43322208 | 43321982 | ID=Msa0501770-mRNA-1:exon:9199;Parent=Msa0501770-mRNA-1 |
| chr3_4 | exon | 43322229 | 43322321 | 43322229 | ID=Msa0501770-mRNA-1:exon:9198;Parent=Msa0501770-mRNA-1 |
| chr3_4 | five_prime_UTR | 43322229 | 43322321 | 43322229 | ID=Msa0501770-mRNA-1:five_prime_utr;Parent=Msa0501770-mRNA-1 |
| chr3_4 | five_prime_UTR | 43322207 | 43322208 | 43322207 | ID=Msa0501770-mRNA-1:five_prime_utr;Parent=Msa0501770-mRNA-1 |
| chr3_4 | CDS | 43321982 | 43322206 | 43321982 | ID=Msa0501770-mRNA-1:cds;Parent=Msa0501770-mRNA-1 |
| chr3_4 | CDS | 43321061 | 43321127 | 43321061 | ID=Msa0501770-mRNA-1:cds;Parent=Msa0501770-mRNA-1 |
| chr3_4 | CDS | 43320452 | 43320498 | 43320452 | ID=Msa0501770-mRNA-1:cds;Parent=Msa0501770-mRNA-1 |
| chr3_4 | CDS | 43320081 | 43320168 | 43320081 | ID=Msa0501770-mRNA-1:cds;Parent=Msa0501770-mRNA-1 |
| chr3_4 | CDS | 43318876 | 43319009 | 43318876 | ID=Msa0501770-mRNA-1:cds;Parent=Msa0501770-mRNA-1 |
| chr3_4 | CDS | 43318587 | 43318685 | 43318587 | ID=Msa0501770-mRNA-1:cds;Parent=Msa0501770-mRNA-1 |
| chr3_4 | CDS | 43317406 | 43317480 | 43317406 | ID=Msa0501770-mRNA-1:cds;Parent=Msa0501770-mRNA-1 |
| chr3_4 | three_prime_UTR | 43317269 | 43317405 | 43317269 | ID=Msa0501770-mRNA-1:three_prime_utr;Parent=Msa0501770-mRNA-1 |
| chr3_4 | three_prime_UTR | 43316862 | 43317233 | 43316862 | ID=Msa0501770-mRNA-1:three_prime_utr;Parent=Msa0501770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
