Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606920 | XP_013456483.1 | 99.592 | 490 | 2 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1008 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606920 | sp|Q8L883|LAX5_MEDTR | 99.592 | 490 | 2 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1008 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606920 | A0A072UL82 | 99.592 | 490 | 2 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1008 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0606920 | Msa0687090 | 0.829369 | 5.350544e-55 | -8.615850e-47 |
| Msa0606920 | Msa1082380 | 0.800172 | 1.632540e-48 | -8.615850e-47 |
| Msa0606920 | Msa1127280 | 0.802094 | 6.603661e-49 | -8.615850e-47 |
| Msa0606920 | Msa1132530 | 0.802802 | 4.718421e-49 | -8.615850e-47 |
| Msa0606920 | Msa1165480 | 0.805988 | 1.023170e-49 | -8.615850e-47 |
| Msa0606920 | Msa1167470 | 0.804406 | 2.193183e-49 | -8.615850e-47 |
| Msa0606920 | Msa1214350 | 0.802577 | 5.252071e-49 | -8.615850e-47 |
| Msa0606920 | Msa1342810 | 0.804774 | 1.838377e-49 | -8.615850e-47 |
| Msa0606920 | Msa1361930 | 0.807549 | 4.788228e-50 | -8.615850e-47 |
| Msa0382740 | Msa0606920 | 0.805427 | 1.341663e-49 | -8.615850e-47 |
| Msa0525000 | Msa0606920 | 0.807783 | 4.269825e-50 | -8.615850e-47 |
| Msa0561560 | Msa0606920 | 0.806221 | 9.139180e-50 | -8.615850e-47 |
| Msa0563940 | Msa0606920 | 0.808163 | 3.544441e-50 | -8.615850e-47 |
| Msa0602430 | Msa0606920 | 0.805057 | 1.604423e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606920 | MtrunA17_Chr4g0037361 | 99.592 | 490 | 2 | 0 | 1 | 490 | 1 | 490 | 0.0 | 1008 |
| Msa0606920 | MtrunA17_Chr4g0006031 | 78.158 | 467 | 96 | 2 | 3 | 463 | 1 | 467 | 0.0 | 770 |
| Msa0606920 | MtrunA17_Chr7g0241841 | 77.516 | 467 | 99 | 1 | 3 | 463 | 1 | 467 | 0.0 | 764 |
| Msa0606920 | MtrunA17_Chr3g0114951 | 80.778 | 463 | 76 | 2 | 3 | 465 | 1 | 450 | 0.0 | 761 |
| Msa0606920 | MtrunA17_Chr5g0436811 | 80.137 | 438 | 87 | 0 | 32 | 469 | 35 | 472 | 0.0 | 751 |
| Msa0606920 | MtrunA17_Chr1g0198081 | 23.355 | 471 | 308 | 13 | 15 | 459 | 37 | 480 | 2.35e-16 | 81.6 |
| Msa0606920 | MtrunA17_Chr4g0027241 | 24.500 | 400 | 265 | 14 | 28 | 400 | 29 | 418 | 4.52e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0606920 | AT2G21050.1 | 89.956 | 458 | 45 | 1 | 6 | 463 | 5 | 461 | 0.0 | 868 |
| Msa0606920 | AT1G77690.1 | 81.741 | 471 | 80 | 2 | 3 | 468 | 1 | 470 | 0.0 | 776 |
| Msa0606920 | AT2G38120.1 | 78.834 | 463 | 96 | 2 | 3 | 465 | 9 | 469 | 0.0 | 768 |
| Msa0606920 | AT5G01240.1 | 77.004 | 474 | 95 | 3 | 3 | 463 | 1 | 473 | 0.0 | 763 |
| Msa0606920 | AT5G01240.2 | 81.679 | 393 | 71 | 1 | 72 | 463 | 1 | 393 | 0.0 | 684 |
| Msa0606920 | AT2G38120.2 | 80.149 | 403 | 78 | 2 | 3 | 405 | 9 | 409 | 0.0 | 675 |
Find 157 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCAGCTGGGAATGCTTTC+TGG | 0.079548 | 4_2:-53609916 | Msa0606920:CDS |
| TCTTTCTATTTATAGCTTTA+AGG | 0.112491 | 4_2:-53606219 | Msa0606920:three_prime_UTR |
| CATCGGCTACAGCAGTTTAT+TGG | 0.184376 | 4_2:-53607648 | Msa0606920:CDS |
| GCTATTATATTCCCTTTCTT+TGG | 0.196497 | 4_2:-53607294 | Msa0606920:CDS |
| GTTCAAGGCCATATATTTAA+TGG | 0.240066 | 4_2:-53607701 | Msa0606920:CDS |
| GGTTATTCCAATTTGGTTCT+TGG | 0.243473 | 4_2:-53607316 | Msa0606920:CDS |
| CCAAGTTATCAAACTTCTTA+TGG | 0.248960 | 4_2:-53610154 | Msa0606920:CDS |
| ATGTCACGGAAGGGTGATTT+TGG | 0.254534 | 4_2:+53607577 | None:intergenic |
| GGTTTCACTCTATCTTTATA+TGG | 0.257792 | 4_2:+53610353 | None:intergenic |
| TGCCAGTGGTTATTCCAATT+TGG | 0.262524 | 4_2:-53607323 | Msa0606920:CDS |
| TTTCAGAAGCCATGTTATTC+AGG | 0.267443 | 4_2:-53609788 | Msa0606920:intron |
| TGGGTCCTAATTGTGGGATT+TGG | 0.273221 | 4_2:-53606605 | Msa0606920:CDS |
| CTAATTGTGGGATTTGGATT+TGG | 0.277225 | 4_2:-53606599 | Msa0606920:CDS |
| GAATTGCAGTTTATAACATT+TGG | 0.281358 | 4_2:-53607435 | Msa0606920:intron |
| ATTTGGTGGGTGGGCCAGTA+TGG | 0.324045 | 4_2:-53606582 | Msa0606920:CDS |
| CCATAAGAAGTTTGATAACT+TGG | 0.326039 | 4_2:+53610154 | None:intergenic |
| ATCGGCTACAGCAGTTTATT+GGG | 0.330718 | 4_2:-53607647 | Msa0606920:CDS |
| TAGGGTAGCCATTAAATATA+TGG | 0.336979 | 4_2:+53607693 | None:intergenic |
| ATAATAGCCAAGAACCAAAT+TGG | 0.338476 | 4_2:+53607309 | None:intergenic |
| TTGCTTTCCACTCTCTAATA+AGG | 0.342436 | 4_2:+53610309 | None:intergenic |
| CAAATCCAAATCCCACAATT+AGG | 0.343301 | 4_2:+53606600 | None:intergenic |
| GGTCATAACAAGACCCAAAA+AGG | 0.348177 | 4_2:+53609110 | None:intergenic |
| ACAGCAGTTTATTGGGCATT+TGG | 0.349797 | 4_2:-53607640 | Msa0606920:CDS |
| CAAACATTCTCTACACATTC+GGG | 0.350387 | 4_2:-53608847 | Msa0606920:CDS |
| CATTTCACAACTATAGAATA+TGG | 0.355943 | 4_2:-53609134 | Msa0606920:CDS |
| TTCTCCCACACAAAGTATAA+TGG | 0.356078 | 4_2:+53607399 | None:intergenic |
| TCGAGCAGAGGATGATTTAA+AGG | 0.360379 | 4_2:+53607194 | None:intergenic |
| AATTGCAGTTTATAACATTT+GGG | 0.362124 | 4_2:-53607434 | Msa0606920:intron |
| GGCTTCGATGAATCGATTAA+TGG | 0.362173 | 4_2:-53606386 | Msa0606920:three_prime_UTR |
| CAGTGGTTTGAGGTTCTTGA+TGG | 0.365848 | 4_2:-53609587 | Msa0606920:CDS |
| CAACTCTTCTATGGTATACT+TGG | 0.385796 | 4_2:-53609883 | Msa0606920:CDS |
| TGTGATCAACGTATTTATAG+TGG | 0.392537 | 4_2:-53606630 | Msa0606920:CDS |
| CACTGGAGAAACGTGGGCTT+GGG | 0.398985 | 4_2:-53609551 | Msa0606920:CDS |
| TGAAGAAGGATTAATACATA+TGG | 0.400673 | 4_2:+53606245 | None:intergenic |
| ACAAACATTCTCTACACATT+CGG | 0.401564 | 4_2:-53608848 | Msa0606920:CDS |
| TTGTCAGTGTCAGCACATAT+AGG | 0.402063 | 4_2:+53607674 | None:intergenic |
| GTACACCAGATTGATACATT+TGG | 0.407861 | 4_2:-53606551 | Msa0606920:CDS |
| GTGGTTCTGCTTATGATGCT+TGG | 0.409331 | 4_2:-53610127 | Msa0606920:CDS |
| CCCAGCTGGGAAAATGAGTA+TGG | 0.409707 | 4_2:+53609928 | None:intergenic |
| CTCCCAAGTTTGTTGGAAGA+TGG | 0.410587 | 4_2:-53606664 | Msa0606920:CDS |
| TACCCATCTTCCAACAAACT+TGG | 0.411247 | 4_2:+53606661 | None:intergenic |
| AGATCCAACGGTGGAATTGA+TGG | 0.413693 | 4_2:+53607269 | None:intergenic |
| AGTTGGGAACTATGTAGAAA+TGG | 0.427037 | 4_2:-53610210 | Msa0606920:CDS |
| ATCCTGCATTTGTTATGTAT+TGG | 0.432011 | 4_2:-53606293 | Msa0606920:three_prime_UTR |
| GAGGTTCTTGATGGACTCCT+AGG | 0.432953 | 4_2:-53609578 | Msa0606920:CDS |
| TGGGATTTGGATTTGGTGGG+TGG | 0.437598 | 4_2:-53606592 | Msa0606920:CDS |
| GTTGCTGAAACGGTAATAGT+TGG | 0.438938 | 4_2:-53610227 | Msa0606920:CDS |
| TTGTGGGATTTGGATTTGGT+GGG | 0.440060 | 4_2:-53606595 | Msa0606920:CDS |
| TGCAGCTGTTCTTCACGGTC+AGG | 0.440570 | 4_2:-53609061 | Msa0606920:intron |
| ACAATTGCAGCTGTTCTTCA+CGG | 0.442390 | 4_2:-53609066 | Msa0606920:CDS |
| AAGGAAGAGAGGCTTGAGAT+TGG | 0.442497 | 4_2:+53610447 | None:intergenic |
| GTGGAAGGAGTGAAGCATTC+GGG | 0.443204 | 4_2:-53608905 | Msa0606920:CDS |
| TGTCAGTGTCAGCACATATA+GGG | 0.444170 | 4_2:+53607675 | None:intergenic |
| GTGAAGATGTGAGCAAGGGC+TGG | 0.448315 | 4_2:+53607216 | None:intergenic |
| AAATGATAAAGTTGCTGAAA+CGG | 0.455587 | 4_2:-53610237 | Msa0606920:CDS |
| ACACTGGAGAAACGTGGGCT+TGG | 0.457439 | 4_2:-53609552 | Msa0606920:CDS |
| TTTCTAGTAGAGAATGGAAA+TGG | 0.457978 | 4_2:-53610261 | Msa0606920:exon |
| TAATTATATGCAGTGGTTTG+AGG | 0.462228 | 4_2:-53609597 | Msa0606920:intron |
| TAAATCATCCTCTGCTCGAC+AGG | 0.465339 | 4_2:-53607190 | Msa0606920:intron |
| ATTGTGGGATTTGGATTTGG+TGG | 0.469072 | 4_2:-53606596 | Msa0606920:CDS |
| TTATGACCACTTACACTGCT+TGG | 0.469304 | 4_2:-53609095 | Msa0606920:CDS |
| ATTCTATAGTTGTGAAATGA+AGG | 0.472883 | 4_2:+53609138 | None:intergenic |
| TGCCAGAAAGCATTCCCAGC+TGG | 0.473037 | 4_2:+53609914 | None:intergenic |
| GTGTACAAAATTCACCATAC+TGG | 0.475447 | 4_2:+53606568 | None:intergenic |
| GAACAACCTCCCAAGTTTGT+TGG | 0.478358 | 4_2:-53606671 | Msa0606920:CDS |
| AGCTGGTGAGGTGGCATGGT+TGG | 0.482884 | 4_2:+53606482 | None:intergenic |
| CGTTTCTCCAGTGTTTCCCT+AGG | 0.484151 | 4_2:+53609561 | None:intergenic |
| CATGTGTTCTACTTGTTATG+TGG | 0.484152 | 4_2:-53606352 | Msa0606920:three_prime_UTR |
| ACCTTGCACAAGCTATAAGT+TGG | 0.485131 | 4_2:+53609492 | None:intergenic |
| TCCCAAGTTTGTTGGAAGAT+GGG | 0.489723 | 4_2:-53606663 | Msa0606920:CDS |
| TCTATGGTATACTTGGTAGC+TGG | 0.491449 | 4_2:-53609876 | Msa0606920:CDS |
| GGACCCATCAATTCCACCGT+TGG | 0.491878 | 4_2:-53607273 | Msa0606920:CDS |
| TATATATTTCTAGTAGAGAA+TGG | 0.492267 | 4_2:-53610267 | Msa0606920:exon |
| GGGATTTGGATTTGGTGGGT+GGG | 0.492530 | 4_2:-53606591 | Msa0606920:CDS |
| TTGCTGAAACGGTAATAGTT+GGG | 0.497503 | 4_2:-53610226 | Msa0606920:CDS |
| GGTGGAAGGAGTGAAGCATT+CGG | 0.499283 | 4_2:-53608906 | Msa0606920:CDS |
| AGTGGTGTGGGTCCTAATTG+TGG | 0.502825 | 4_2:-53606612 | Msa0606920:CDS |
| CAACATAGAGTATGCTAATG+AGG | 0.506143 | 4_2:+53609845 | None:intergenic |
| AGAGTCCAAATGTATCAATC+TGG | 0.507999 | 4_2:+53606546 | None:intergenic |
| GTTTAGCTGTGCTTCCAACC+AGG | 0.508117 | 4_2:-53610105 | Msa0606920:intron |
| TGGTGGTGGTGATGCGGTGA+AGG | 0.508127 | 4_2:+53606446 | None:intergenic |
| GAATTGATGGGTCCAAAGAA+AGG | 0.509696 | 4_2:+53607282 | None:intergenic |
| AAGGCGCGGTTGCATTCAGC+TGG | 0.510713 | 4_2:+53606465 | None:intergenic |
| AAGTTTATGCAAACGTGCAT+TGG | 0.511403 | 4_2:-53607352 | Msa0606920:CDS |
| AACCAATACATAACAAATGC+AGG | 0.512298 | 4_2:+53606291 | None:intergenic |
| GCCAGAAAGCATTCCCAGCT+GGG | 0.513864 | 4_2:+53609915 | None:intergenic |
| GTGGAAGCCACAAAAGTTCA+AGG | 0.514058 | 4_2:-53607716 | Msa0606920:CDS |
| GCACACCATTATACTTTGTG+TGG | 0.519101 | 4_2:-53607404 | Msa0606920:CDS |
| AACTTGGACTTTATGTCCTG+TGG | 0.525467 | 4_2:+53610170 | None:intergenic |
| ATTCAGCTGGTGAGGTGGCA+TGG | 0.528958 | 4_2:+53606478 | None:intergenic |
| ATAATCTTGACAAGAGGACT+TGG | 0.530895 | 4_2:-53609203 | Msa0606920:CDS |
| TGGAAGAAGAGCAAAAGCAT+TGG | 0.532720 | 4_2:+53607597 | None:intergenic |
| TCTTAACTCTTGTTTCCTTG+TGG | 0.533242 | 4_2:+53610332 | None:intergenic |
| GTTAAGACCTTATTAGAGAG+TGG | 0.537057 | 4_2:-53610316 | Msa0606920:five_prime_UTR |
| TTGGACTTTATGTCCTGTGG+TGG | 0.540219 | 4_2:+53610173 | None:intergenic |
| TTATCAAACTTCTTATGGCA+TGG | 0.541090 | 4_2:-53610149 | Msa0606920:CDS |
| ACTCAATATATCAGTGGTGG+TGG | 0.547534 | 4_2:+53606432 | None:intergenic |
| AAGGGCTGGGATGATGTAAA+CGG | 0.549825 | 4_2:+53607230 | None:intergenic |
| AAGATACCAAGCAGTGTAAG+TGG | 0.551218 | 4_2:+53609089 | None:intergenic |
| AGGTTCTTGATGGACTCCTA+GGG | 0.551440 | 4_2:-53609577 | Msa0606920:CDS |
| AAGTTTGTTGGAAGATGGGT+AGG | 0.551616 | 4_2:-53606659 | Msa0606920:CDS |
| CAATAAACTGCTGTAGCCGA+TGG | 0.552857 | 4_2:+53607649 | None:intergenic |
| AAATAGAAAGAAATTGAAGA+AGG | 0.554499 | 4_2:+53606231 | None:intergenic |
| CAACGTATTTATAGTGGTGT+GGG | 0.556269 | 4_2:-53606624 | Msa0606920:CDS |
| ACCCATCTTCCAACAAACTT+GGG | 0.556973 | 4_2:+53606662 | None:intergenic |
| TGAAGATGTGAGCAAGGGCT+GGG | 0.560605 | 4_2:+53607217 | None:intergenic |
| GATCCAACGGTGGAATTGAT+GGG | 0.560821 | 4_2:+53607270 | None:intergenic |
| AATAACAGCCATGTCACGGA+AGG | 0.562241 | 4_2:+53607567 | None:intergenic |
| GTGGTGTGGGTCCTAATTGT+GGG | 0.562345 | 4_2:-53606611 | Msa0606920:CDS |
| GTTGGAACAGAAGGTGTTGG+TGG | 0.562882 | 4_2:+53606500 | None:intergenic |
| GGAACAGAAGGTGTTGGTGG+AGG | 0.565236 | 4_2:+53606503 | None:intergenic |
| AAAATCACCCTTCCGTGACA+TGG | 0.573703 | 4_2:-53607575 | Msa0606920:CDS |
| GAATGTGTAGAGAATGTTTG+TGG | 0.575502 | 4_2:+53608850 | None:intergenic |
| ATGGACTCCTAGGGAAACAC+TGG | 0.577201 | 4_2:-53609568 | Msa0606920:CDS |
| TCAACGTATTTATAGTGGTG+TGG | 0.578406 | 4_2:-53606625 | Msa0606920:CDS |
| TTTGTGTGGGAGAAAACAGT+AGG | 0.580837 | 4_2:-53607390 | Msa0606920:CDS |
| AATTGATGGGTCCAAAGAAA+GGG | 0.585820 | 4_2:+53607283 | None:intergenic |
| TTAAAATAACAGCCATGTCA+CGG | 0.586272 | 4_2:+53607563 | None:intergenic |
| GTTGCATTCAGCTGGTGAGG+TGG | 0.587950 | 4_2:+53606473 | None:intergenic |
| GGTGGCATGGTTGGAACAGA+AGG | 0.588974 | 4_2:+53606491 | None:intergenic |
| TAAAGGTGAAGATGTGAGCA+AGG | 0.591344 | 4_2:+53607211 | None:intergenic |
| TGATGAGAAACTAACCTGGT+TGG | 0.592816 | 4_2:+53610091 | None:intergenic |
| TATGTAGAAATGGAAAGTGA+AGG | 0.594281 | 4_2:-53610200 | Msa0606920:CDS |
| TGTATTGCACGATCTTGATG+AGG | 0.595414 | 4_2:-53606407 | Msa0606920:three_prime_UTR |
| AACCAAATTGGAATAACCAC+TGG | 0.595756 | 4_2:+53607321 | None:intergenic |
| TAAATGATAATCTTGACAAG+AGG | 0.596044 | 4_2:-53609209 | Msa0606920:CDS |
| GGGAAATAATGCATGCGATG+TGG | 0.596207 | 4_2:-53607735 | Msa0606920:CDS |
| TCCAACTTATAGCTTGTGCA+AGG | 0.600608 | 4_2:-53609493 | Msa0606920:intron |
| GTGGTGATGCGGTGAAGGCG+CGG | 0.601503 | 4_2:+53606451 | None:intergenic |
| ATGGTTGGAACAGAAGGTGT+TGG | 0.602151 | 4_2:+53606497 | None:intergenic |
| GATATTGTCTTACACAGTAA+CGG | 0.603545 | 4_2:+53608817 | None:intergenic |
| GCGGTTGCATTCAGCTGGTG+AGG | 0.603989 | 4_2:+53606470 | None:intergenic |
| CATCTTCCAACAAACTTGGG+AGG | 0.605458 | 4_2:+53606665 | None:intergenic |
| CACACCATTATACTTTGTGT+GGG | 0.607429 | 4_2:-53607403 | Msa0606920:CDS |
| TGTTGTGGTGTATAGGTGGA+AGG | 0.609859 | 4_2:-53608920 | Msa0606920:intron |
| AAGTGAAGGAAAACCACCAC+AGG | 0.618329 | 4_2:-53610186 | Msa0606920:CDS |
| AACATTCTCTACACATTCGG+GGG | 0.631658 | 4_2:-53608845 | Msa0606920:CDS |
| TACAATACTCAATATATCAG+TGG | 0.635352 | 4_2:+53606426 | None:intergenic |
| TCAAACTTCTTATGGCATGG+TGG | 0.636835 | 4_2:-53610146 | Msa0606920:CDS |
| ATATTATACCTGTCGAGCAG+AGG | 0.646001 | 4_2:+53607182 | None:intergenic |
| GCTGACACTGACAATTCCAT+CGG | 0.648246 | 4_2:-53607665 | Msa0606920:CDS |
| ATAACAGCCATGTCACGGAA+GGG | 0.649738 | 4_2:+53607568 | None:intergenic |
| AAGGTGTTGGTGGAGGACAT+TGG | 0.653915 | 4_2:+53606510 | None:intergenic |
| AAAGGTGAAGATGTGAGCAA+GGG | 0.654013 | 4_2:+53607212 | None:intergenic |
| AGGGAAACACTGGAGAAACG+TGG | 0.658358 | 4_2:-53609558 | Msa0606920:CDS |
| AATACTCAATATATCAGTGG+TGG | 0.659414 | 4_2:+53606429 | None:intergenic |
| TTGTGTGGGAGAAAACAGTA+GGG | 0.665602 | 4_2:-53607389 | Msa0606920:CDS |
| AAACATTCTCTACACATTCG+GGG | 0.672769 | 4_2:-53608846 | Msa0606920:CDS |
| ACTGACAAGGAGAGATCCAA+CGG | 0.673567 | 4_2:+53607257 | None:intergenic |
| TGGTGTGATGCAGAATGCTG+TGG | 0.682003 | 4_2:-53606693 | Msa0606920:intron |
| TGTAAACGGTGAAACTGACA+AGG | 0.685282 | 4_2:+53607244 | None:intergenic |
| GGGAAACACTGGAGAAACGT+GGG | 0.686097 | 4_2:-53609557 | Msa0606920:CDS |
| TGCATTGGTGAGATTGCCAG+TGG | 0.691338 | 4_2:-53607337 | Msa0606920:CDS |
| AAAGATAGAGTGAAACCACA+AGG | 0.695407 | 4_2:-53610347 | Msa0606920:five_prime_UTR |
| TATCAGTGGTGGTGGTGATG+CGG | 0.696565 | 4_2:+53606440 | None:intergenic |
| TAAGTATTACCTGAATAACA+TGG | 0.718760 | 4_2:+53609779 | None:intergenic |
| GACAAGGAGAGATCCAACGG+TGG | 0.757962 | 4_2:+53607260 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTTATATATTGTGATA+TGG | - | chr4_2:53606547-53606566 | Msa0606920:CDS | 10.0% |
| !!! | AAAATAATTCTATATTTTAC+AGG | - | chr4_2:53607706-53607725 | Msa0606920:CDS | 10.0% |
| !!! | AAATAATTCTATATTTTACA+GGG | - | chr4_2:53607707-53607726 | Msa0606920:CDS | 10.0% |
| !!! | ATTAATTTATTTTCTTCATT+TGG | + | chr4_2:53608793-53608812 | None:intergenic | 10.0% |
| !! | CACATAACAATTAAATTTAA+TGG | + | chr4_2:53606843-53606862 | None:intergenic | 15.0% |
| !! | GATTCTGATAATTATTTATT+AGG | + | chr4_2:53607568-53607587 | None:intergenic | 15.0% |
| !!! | AATAATTCTATATTTTACAG+GGG | - | chr4_2:53607708-53607727 | Msa0606920:CDS | 15.0% |
| !!! | TTTTGGATATTATATACATA+AGG | + | chr4_2:53608134-53608153 | None:intergenic | 15.0% |
| !! | AATATCCAAAACTTAAAAAT+AGG | - | chr4_2:53608143-53608162 | Msa0606920:intron | 15.0% |
| !!! | AAAATAGAATGTCAATATTT+TGG | + | chr4_2:53608418-53608437 | None:intergenic | 15.0% |
| !! | AAATTGATTAACATGTTAAT+TGG | - | chr4_2:53609116-53609135 | Msa0606920:CDS | 15.0% |
| !! | ACTTTACTTAGAATAATAAA+TGG | + | chr4_2:53609632-53609651 | None:intergenic | 15.0% |
| !!! | TTTTTATTATTGAATTGAAC+TGG | - | chr4_2:53609861-53609880 | Msa0606920:CDS | 15.0% |
| !! | AAAAACAAAAAAAATGTTCA+TGG | - | chr4_2:53610432-53610451 | Msa0606920:five_prime_UTR | 15.0% |
| !!! | ATAAGTAACTTGTTTTTGTA+AGG | + | chr4_2:53606156-53606175 | None:intergenic | 20.0% |
| !!! | TATATATTTCTAGTAGAGAA+TGG | - | chr4_2:53606314-53606333 | Msa0606920:three_prime_UTR | 20.0% |
| !! | ACAATTAAATTTAATGGAGT+TGG | + | chr4_2:53606837-53606856 | None:intergenic | 20.0% |
| !! | ATTTAATTGTTATGTGTGTT+CGG | - | chr4_2:53606847-53606866 | Msa0606920:intron | 20.0% |
| !! | TTATGATTAATTATATGCAG+TGG | - | chr4_2:53606977-53606996 | Msa0606920:intron | 20.0% |
| !! | ATTTATGTAATATATGTTGC+TGG | + | chr4_2:53607357-53607376 | None:intergenic | 20.0% |
| !! | TAAATAAATTCAGTACTAGT+TGG | - | chr4_2:53607889-53607908 | Msa0606920:intron | 20.0% |
| !!! | AGTAACCTATTTTTAAGTTT+TGG | + | chr4_2:53608151-53608170 | None:intergenic | 20.0% |
| !!! | ATGATGAAAATACCATTTTT+GGG | + | chr4_2:53608456-53608475 | None:intergenic | 20.0% |
| !!! | ATTGTCTTTTTTGGATTTTA+AGG | - | chr4_2:53608737-53608756 | Msa0606920:intron | 20.0% |
| !! | AATTGCAGTTTATAACATTT+GGG | - | chr4_2:53609147-53609166 | Msa0606920:CDS | 20.0% |
| !! | TAATAATGCAGAAATTAATG+TGG | + | chr4_2:53609789-53609808 | None:intergenic | 20.0% |
| !! | AAATAGAAAGAAATTGAAGA+AGG | + | chr4_2:53610353-53610372 | None:intergenic | 20.0% |
| !!! | TCTTTCTATTTATAGCTTTA+AGG | - | chr4_2:53610362-53610381 | Msa0606920:five_prime_UTR | 20.0% |
| ! | AAATGATAAAGTTGCTGAAA+CGG | - | chr4_2:53606344-53606363 | Msa0606920:three_prime_UTR | 25.0% |
| !! | GATATGGTTTTTCATTTATG+AGG | - | chr4_2:53606563-53606582 | Msa0606920:CDS | 25.0% |
| !!! | ATACTTTTTCAACTCTTCTA+TGG | - | chr4_2:53606689-53606708 | Msa0606920:intron | 25.0% |
| ! | TAAGTATTACCTGAATAACA+TGG | + | chr4_2:53606805-53606824 | None:intergenic | 25.0% |
| !! | AAATTTAATGGAGTTGGTTA+GGG | + | chr4_2:53606831-53606850 | None:intergenic | 25.0% |
| !! | TAAATTTAATGGAGTTGGTT+AGG | + | chr4_2:53606832-53606851 | None:intergenic | 25.0% |
| ! | AAGATGATAAAGTCTATGTT+TGG | + | chr4_2:53606936-53606955 | None:intergenic | 25.0% |
| ! | AGACTTTATCATCTTATAGA+TGG | - | chr4_2:53606941-53606960 | Msa0606920:intron | 25.0% |
| ! | TTTATCATCTTATAGATGGT+TGG | - | chr4_2:53606945-53606964 | Msa0606920:intron | 25.0% |
| !! | AATTGCACATTTCTTTTGTT+TGG | - | chr4_2:53607057-53607076 | Msa0606920:intron | 25.0% |
| ! | TAAATGATAATCTTGACAAG+AGG | - | chr4_2:53607372-53607391 | Msa0606920:CDS | 25.0% |
| ! | AAATGAAGGAATAAAAACAG+TGG | + | chr4_2:53607432-53607451 | None:intergenic | 25.0% |
| ! | ATTCTATAGTTGTGAAATGA+AGG | + | chr4_2:53607446-53607465 | None:intergenic | 25.0% |
| ! | CATTTCACAACTATAGAATA+TGG | - | chr4_2:53607447-53607466 | Msa0606920:intron | 25.0% |
| !! | TATAGAATATGGTCCTTTTT+GGG | - | chr4_2:53607458-53607477 | Msa0606920:intron | 25.0% |
| !!! | TTTTGGTTTATATGTTGTTG+TGG | - | chr4_2:53607646-53607665 | Msa0606920:CDS | 25.0% |
| ! | GTGAAAATAAAAAACACATG+GGG | + | chr4_2:53607831-53607850 | None:intergenic | 25.0% |
| ! | GGTGAAAATAAAAAACACAT+GGG | + | chr4_2:53607832-53607851 | None:intergenic | 25.0% |
| ! | ATTTATAATGATACGTCCAA+AGG | + | chr4_2:53607874-53607893 | None:intergenic | 25.0% |
| ! | TTAACCTCTTTAGACATAAT+CGG | - | chr4_2:53608069-53608088 | Msa0606920:intron | 25.0% |
| ! | AAATGCTAAAAGAAAACTCA+TGG | + | chr4_2:53608254-53608273 | None:intergenic | 25.0% |
| !! | ATAATTTTAGACCCCAAAAA+TGG | - | chr4_2:53608441-53608460 | Msa0606920:intron | 25.0% |
| !!! | TGATGAAAATACCATTTTTG+GGG | + | chr4_2:53608455-53608474 | None:intergenic | 25.0% |
| !! | GATGATGAAAATACCATTTT+TGG | + | chr4_2:53608457-53608476 | None:intergenic | 25.0% |
| !!! | GCTACTTTTCTATTTACTAT+AGG | + | chr4_2:53608551-53608570 | None:intergenic | 25.0% |
| ! | GAGAGACATTTGATATATTA+AGG | - | chr4_2:53608670-53608689 | Msa0606920:intron | 25.0% |
| !!! | ACAAGAGTTATTGTCTTTTT+TGG | - | chr4_2:53608728-53608747 | Msa0606920:intron | 25.0% |
| ! | TGAGATGATGATAAATGTAT+TGG | - | chr4_2:53608815-53608834 | Msa0606920:intron | 25.0% |
| !! | ATGATGATAAATGTATTGGT+TGG | - | chr4_2:53608819-53608838 | Msa0606920:intron | 25.0% |
| !!! | TATTTTAATGCTCATTCATC+AGG | - | chr4_2:53609033-53609052 | Msa0606920:intron | 25.0% |
| ! | GAATTGCAGTTTATAACATT+TGG | - | chr4_2:53609146-53609165 | Msa0606920:CDS | 25.0% |
| !!! | ATTTTTTTGGAGAAAGTTTC+GGG | + | chr4_2:53609740-53609759 | None:intergenic | 25.0% |
| !!! | GATTTTTTTGGAGAAAGTTT+CGG | + | chr4_2:53609741-53609760 | None:intergenic | 25.0% |
| !!! | TAAAAAGGATCGGATTTTTT+TGG | + | chr4_2:53609753-53609772 | None:intergenic | 25.0% |
| !! | GTAAAAAGTGTAAAAAGGAT+CGG | + | chr4_2:53609763-53609782 | None:intergenic | 25.0% |
| ! | TATTGAATTGAACTGGTATA+TGG | - | chr4_2:53609868-53609887 | Msa0606920:CDS | 25.0% |
| ! | TACAATACTCAATATATCAG+TGG | + | chr4_2:53610158-53610177 | None:intergenic | 25.0% |
| ! | TGAAGAAGGATTAATACATA+TGG | + | chr4_2:53610339-53610358 | None:intergenic | 25.0% |
| ! | TCTTATTCTCTTTTGTGGTA+GGG | + | chr4_2:53606200-53606219 | None:intergenic | 30.0% |
| ! | TTCTTATTCTCTTTTGTGGT+AGG | + | chr4_2:53606201-53606220 | None:intergenic | 30.0% |
| ! | CTTGTTCTTATTCTCTTTTG+TGG | + | chr4_2:53606205-53606224 | None:intergenic | 30.0% |
| GGTTTCACTCTATCTTTATA+TGG | + | chr4_2:53606231-53606250 | None:intergenic | 30.0% | |
| ! | TTTCTAGTAGAGAATGGAAA+TGG | - | chr4_2:53606320-53606339 | Msa0606920:three_prime_UTR | 30.0% |
| TATGTAGAAATGGAAAGTGA+AGG | - | chr4_2:53606381-53606400 | Msa0606920:three_prime_UTR | 30.0% | |
| ! | CCATAAGAAGTTTGATAACT+TGG | + | chr4_2:53606430-53606449 | None:intergenic | 30.0% |
| CCAAGTTATCAAACTTCTTA+TGG | - | chr4_2:53606427-53606446 | Msa0606920:exon | 30.0% | |
| TTATCAAACTTCTTATGGCA+TGG | - | chr4_2:53606432-53606451 | Msa0606920:exon | 30.0% | |
| CATTATATGATATGTGACTC+AGG | - | chr4_2:53606607-53606626 | Msa0606920:CDS | 30.0% | |
| AAAGTCTATGTTTGGTATCA+CGG | + | chr4_2:53606928-53606947 | None:intergenic | 30.0% | |
| TAATTATATGCAGTGGTTTG+AGG | - | chr4_2:53606984-53607003 | Msa0606920:intron | 30.0% | |
| CAAGAAAGAGTTAAAGAAAG+AGG | + | chr4_2:53607133-53607152 | None:intergenic | 30.0% | |
| CTGCAACACCAATATTTATT+GGG | - | chr4_2:53607283-53607302 | Msa0606920:CDS | 30.0% | |
| TGCAACACCAATATTTATTG+GGG | - | chr4_2:53607284-53607303 | Msa0606920:CDS | 30.0% | |
| ! | CTATAGAATATGGTCCTTTT+TGG | - | chr4_2:53607457-53607476 | Msa0606920:intron | 30.0% |
| TATATGTTGTTGTGGTGTAT+AGG | - | chr4_2:53607654-53607673 | Msa0606920:CDS | 30.0% | |
| ACAAACATTCTCTACACATT+CGG | - | chr4_2:53607733-53607752 | Msa0606920:CDS | 30.0% | |
| GATATTGTCTTACACAGTAA+CGG | + | chr4_2:53607767-53607786 | None:intergenic | 30.0% | |
| GTGTATGTGTTAAAACGTAA+AGG | + | chr4_2:53607809-53607828 | None:intergenic | 30.0% | |
| GGGTGAAAATAAAAAACACA+TGG | + | chr4_2:53607833-53607852 | None:intergenic | 30.0% | |
| !!! | TTTTTTATTTTCACCCCTCA+TGG | - | chr4_2:53607837-53607856 | Msa0606920:intron | 30.0% |
| AAAGTAGTACAATACCATAG+TGG | - | chr4_2:53607932-53607951 | Msa0606920:intron | 30.0% | |
| GAAATAACCATGCAACAATT+GGG | - | chr4_2:53607960-53607979 | Msa0606920:intron | 30.0% | |
| AAATAACCATGCAACAATTG+GGG | - | chr4_2:53607961-53607980 | Msa0606920:intron | 30.0% | |
| GATTATGTCTAGAGAAGTTA+AGG | + | chr4_2:53608014-53608033 | None:intergenic | 30.0% | |
| GATTATGTCTAAAGAGGTTA+AGG | + | chr4_2:53608070-53608089 | None:intergenic | 30.0% | |
| TCATGGAGTTTAAGGAAAAA+GGG | + | chr4_2:53608237-53608256 | None:intergenic | 30.0% | |
| AAGAAAACTCATGGAGTTTA+AGG | + | chr4_2:53608245-53608264 | None:intergenic | 30.0% | |
| CATTATTCACTGTAAAAAGC+TGG | + | chr4_2:53608366-53608385 | None:intergenic | 30.0% | |
| GTAAATAGAAAAGTAGCTCT+TGG | - | chr4_2:53608554-53608573 | Msa0606920:intron | 30.0% | |
| ! | ATTTTTAACCAAGTGACCTT+AGG | + | chr4_2:53608581-53608600 | None:intergenic | 30.0% |
| !! | ATAAATGTATTGGTTGGTAC+AGG | - | chr4_2:53608825-53608844 | Msa0606920:intron | 30.0% |
| !! | TAAATGTATTGGTTGGTACA+GGG | - | chr4_2:53608826-53608845 | Msa0606920:intron | 30.0% |
| GTTCAAGGCCATATATTTAA+TGG | - | chr4_2:53608880-53608899 | Msa0606920:CDS | 30.0% | |
| TAGGGTAGCCATTAAATATA+TGG | + | chr4_2:53608891-53608910 | None:intergenic | 30.0% | |
| TTAAAATAACAGCCATGTCA+CGG | + | chr4_2:53609021-53609040 | None:intergenic | 30.0% | |
| ATAATAGCCAAGAACCAAAT+TGG | + | chr4_2:53609275-53609294 | None:intergenic | 30.0% | |
| GCTATTATATTCCCTTTCTT+TGG | - | chr4_2:53609287-53609306 | Msa0606920:intron | 30.0% | |
| CACACGAAATAATTAATGTC+AGG | + | chr4_2:53609527-53609546 | None:intergenic | 30.0% | |
| AATTTGCCAACAGAAAGAAT+AGG | - | chr4_2:53609652-53609671 | Msa0606920:intron | 30.0% | |
| CATATACCTATTCTTTCTGT+TGG | + | chr4_2:53609661-53609680 | None:intergenic | 30.0% | |
| CAACAGAAAGAATAGGTATA+TGG | - | chr4_2:53609659-53609678 | Msa0606920:intron | 30.0% | |
| ! | GGTCAGTAAAAAGTGTAAAA+AGG | + | chr4_2:53609768-53609787 | None:intergenic | 30.0% |
| TGTGATCAACGTATTTATAG+TGG | - | chr4_2:53609951-53609970 | Msa0606920:CDS | 30.0% | |
| AATACTCAATATATCAGTGG+TGG | + | chr4_2:53610155-53610174 | None:intergenic | 30.0% | |
| !! | ATCCTGCATTTGTTATGTAT+TGG | - | chr4_2:53610288-53610307 | Msa0606920:five_prime_UTR | 30.0% |
| AACCAATACATAACAAATGC+AGG | + | chr4_2:53610293-53610312 | None:intergenic | 30.0% | |
| !!! | CTTGTTTTTGTAAGGAAGAG+AGG | + | chr4_2:53606148-53606167 | None:intergenic | 35.0% |
| ! | CTTATTCTCTTTTGTGGTAG+GGG | + | chr4_2:53606199-53606218 | None:intergenic | 35.0% |
| AAAGATAGAGTGAAACCACA+AGG | - | chr4_2:53606234-53606253 | Msa0606920:three_prime_UTR | 35.0% | |
| ! | TCTTAACTCTTGTTTCCTTG+TGG | + | chr4_2:53606252-53606271 | None:intergenic | 35.0% |
| GTTAAGACCTTATTAGAGAG+TGG | - | chr4_2:53606265-53606284 | Msa0606920:three_prime_UTR | 35.0% | |
| TTGCTTTCCACTCTCTAATA+AGG | + | chr4_2:53606275-53606294 | None:intergenic | 35.0% | |
| TTGCTGAAACGGTAATAGTT+GGG | - | chr4_2:53606355-53606374 | Msa0606920:three_prime_UTR | 35.0% | |
| AGTTGGGAACTATGTAGAAA+TGG | - | chr4_2:53606371-53606390 | Msa0606920:three_prime_UTR | 35.0% | |
| TGATTGATGAGAAACTAACC+TGG | + | chr4_2:53606497-53606516 | None:intergenic | 35.0% | |
| TATATGATATGTGACTCAGG+TGG | - | chr4_2:53606610-53606629 | Msa0606920:CDS | 35.0% | |
| CAACTCTTCTATGGTATACT+TGG | - | chr4_2:53606698-53606717 | Msa0606920:intron | 35.0% | |
| CAACATAGAGTATGCTAATG+AGG | + | chr4_2:53606739-53606758 | None:intergenic | 35.0% | |
| TTTCAGAAGCCATGTTATTC+AGG | - | chr4_2:53606793-53606812 | Msa0606920:intron | 35.0% | |
| TTAAAGAAAGAGGTCAGAGT+AGG | + | chr4_2:53607123-53607142 | None:intergenic | 35.0% | |
| !! | ATAAATATTGGTGTTGCAGG+TGG | + | chr4_2:53607282-53607301 | None:intergenic | 35.0% |
| !! | CCAATAAATATTGGTGTTGC+AGG | + | chr4_2:53607285-53607304 | None:intergenic | 35.0% |
| CCTGCAACACCAATATTTAT+TGG | - | chr4_2:53607282-53607301 | Msa0606920:CDS | 35.0% | |
| ATGCACACCCCAATAAATAT+TGG | + | chr4_2:53607294-53607313 | None:intergenic | 35.0% | |
| ATAATCTTGACAAGAGGACT+TGG | - | chr4_2:53607378-53607397 | Msa0606920:CDS | 35.0% | |
| ! | AGGACTTGGACTTACATTTT+CGG | - | chr4_2:53607392-53607411 | Msa0606920:CDS | 35.0% |
| TGAAGGAATAAAAACAGTGG+TGG | + | chr4_2:53607429-53607448 | None:intergenic | 35.0% | |
| GAATGTGTAGAGAATGTTTG+TGG | + | chr4_2:53607734-53607753 | None:intergenic | 35.0% | |
| CAAACATTCTCTACACATTC+GGG | - | chr4_2:53607734-53607753 | Msa0606920:CDS | 35.0% | |
| AAACATTCTCTACACATTCG+GGG | - | chr4_2:53607735-53607754 | Msa0606920:CDS | 35.0% | |
| AGGCAAGTAAAATACCATGA+GGG | + | chr4_2:53607854-53607873 | None:intergenic | 35.0% | |
| AAGGCAAGTAAAATACCATG+AGG | + | chr4_2:53607855-53607874 | None:intergenic | 35.0% | |
| ! | CATGGTATTTTACTTGCCTT+TGG | - | chr4_2:53607855-53607874 | Msa0606920:intron | 35.0% |
| CGAAATAACCATGCAACAAT+TGG | - | chr4_2:53607959-53607978 | Msa0606920:intron | 35.0% | |
| CTAAAGAGGTTAAGGACTTA+AGG | + | chr4_2:53608062-53608081 | None:intergenic | 35.0% | |
| TGTTCCGATTATGTCTAAAG+AGG | + | chr4_2:53608076-53608095 | None:intergenic | 35.0% | |
| ! | TTTTAACCCCAAAATACCCT+TGG | - | chr4_2:53608188-53608207 | Msa0606920:intron | 35.0% |
| CTCATGGAGTTTAAGGAAAA+AGG | + | chr4_2:53608238-53608257 | None:intergenic | 35.0% | |
| CCATTTCAAAGAAAGAACCT+TGG | + | chr4_2:53608287-53608306 | None:intergenic | 35.0% | |
| ! | CCAAGGTTCTTTCTTTGAAA+TGG | - | chr4_2:53608284-53608303 | Msa0606920:intron | 35.0% |
| ! | TAACCTTTTACTCTCTGAGT+CGG | + | chr4_2:53608645-53608664 | None:intergenic | 35.0% |
| !!! | GGATTTTAAGGCAACATACA+TGG | - | chr4_2:53608749-53608768 | Msa0606920:intron | 35.0% |
| !! | TATATGGCCTTGAACTTTTG+TGG | + | chr4_2:53608875-53608894 | None:intergenic | 35.0% |
| ! | TGAATGAATGTGTTGCTACT+AGG | + | chr4_2:53609061-53609080 | None:intergenic | 35.0% |
| CACACCATTATACTTTGTGT+GGG | - | chr4_2:53609178-53609197 | Msa0606920:CDS | 35.0% | |
| TTCTCCCACACAAAGTATAA+TGG | + | chr4_2:53609185-53609204 | None:intergenic | 35.0% | |
| AAGTTTATGCAAACGTGCAT+TGG | - | chr4_2:53609229-53609248 | Msa0606920:intron | 35.0% | |
| AACCAAATTGGAATAACCAC+TGG | + | chr4_2:53609263-53609282 | None:intergenic | 35.0% | |
| !! | GGTTATTCCAATTTGGTTCT+TGG | - | chr4_2:53609265-53609284 | Msa0606920:intron | 35.0% |
| ! | AATTGATGGGTCCAAAGAAA+GGG | + | chr4_2:53609301-53609320 | None:intergenic | 35.0% |
| CTCAGTCAAACTATTGGAAA+AGG | + | chr4_2:53609569-53609588 | None:intergenic | 35.0% | |
| TCAACGTATTTATAGTGGTG+TGG | - | chr4_2:53609956-53609975 | Msa0606920:intron | 35.0% | |
| CAACGTATTTATAGTGGTGT+GGG | - | chr4_2:53609957-53609976 | Msa0606920:intron | 35.0% | |
| CAAATCCAAATCCCACAATT+AGG | + | chr4_2:53609984-53610003 | None:intergenic | 35.0% | |
| CTAATTGTGGGATTTGGATT+TGG | - | chr4_2:53609982-53610001 | Msa0606920:intron | 35.0% | |
| GTGTACAAAATTCACCATAC+TGG | + | chr4_2:53610016-53610035 | None:intergenic | 35.0% | |
| GTACACCAGATTGATACATT+TGG | - | chr4_2:53610030-53610049 | Msa0606920:intron | 35.0% | |
| AGAGTCCAAATGTATCAATC+TGG | + | chr4_2:53610038-53610057 | None:intergenic | 35.0% | |
| !! | CATGTGTTCTACTTGTTATG+TGG | - | chr4_2:53610229-53610248 | Msa0606920:CDS | 35.0% |
| !!! | GGTAGTTGAGTTTTTTGTCA+TGG | - | chr4_2:53610383-53610402 | Msa0606920:five_prime_UTR | 35.0% |
| GTTGCTGAAACGGTAATAGT+TGG | - | chr4_2:53606354-53606373 | Msa0606920:three_prime_UTR | 40.0% | |
| AACTTGGACTTTATGTCCTG+TGG | + | chr4_2:53606414-53606433 | None:intergenic | 40.0% | |
| TCAAACTTCTTATGGCATGG+TGG | - | chr4_2:53606435-53606454 | Msa0606920:exon | 40.0% | |
| TGATGAGAAACTAACCTGGT+TGG | + | chr4_2:53606493-53606512 | None:intergenic | 40.0% | |
| ! | TCTATGGTATACTTGGTAGC+TGG | - | chr4_2:53606705-53606724 | Msa0606920:intron | 40.0% |
| GTTATGTGTGTTCGGTATCA+CGG | - | chr4_2:53606855-53606874 | Msa0606920:intron | 40.0% | |
| ATGTCAGAATCAAGACGACT+CGG | - | chr4_2:53606883-53606902 | Msa0606920:intron | 40.0% | |
| ! | TCCAACTTATAGCTTGTGCA+AGG | - | chr4_2:53607088-53607107 | Msa0606920:intron | 40.0% |
| ACCTTGCACAAGCTATAAGT+TGG | + | chr4_2:53607092-53607111 | None:intergenic | 40.0% | |
| GGTCATAACAAGACCCAAAA+AGG | + | chr4_2:53607474-53607493 | None:intergenic | 40.0% | |
| TTATGACCACTTACACTGCT+TGG | - | chr4_2:53607486-53607505 | Msa0606920:intron | 40.0% | |
| AAGATACCAAGCAGTGTAAG+TGG | + | chr4_2:53607495-53607514 | None:intergenic | 40.0% | |
| ACAATTGCAGCTGTTCTTCA+CGG | - | chr4_2:53607515-53607534 | Msa0606920:intron | 40.0% | |
| ATGTTGTTGTGGTGTATAGG+TGG | - | chr4_2:53607657-53607676 | Msa0606920:CDS | 40.0% | |
| AACATTCTCTACACATTCGG+GGG | - | chr4_2:53607736-53607755 | Msa0606920:CDS | 40.0% | |
| GGCAAGTAAAATACCATGAG+GGG | + | chr4_2:53607853-53607872 | None:intergenic | 40.0% | |
| ! | GGTTATTTCGCTTTCCACTA+TGG | + | chr4_2:53607949-53607968 | None:intergenic | 40.0% |
| TTTAAGCCCCAATTGTTGCA+TGG | + | chr4_2:53607970-53607989 | None:intergenic | 40.0% | |
| AGCATTTAGCTAGAAAGCCA+AGG | - | chr4_2:53608267-53608286 | Msa0606920:intron | 40.0% | |
| AAGAAGACCCTCATAGATTC+AGG | - | chr4_2:53608337-53608356 | Msa0606920:intron | 40.0% | |
| AAAAGTAGCTCTTGGACCTA+AGG | - | chr4_2:53608562-53608581 | Msa0606920:intron | 40.0% | |
| ! | AACCTTTTACTCTCTGAGTC+GGG | + | chr4_2:53608644-53608663 | None:intergenic | 40.0% |
| GAAGTGAAGTGAAGAACCAA+GGG | + | chr4_2:53608708-53608727 | None:intergenic | 40.0% | |
| TGAAGTGAAGTGAAGAACCA+AGG | + | chr4_2:53608709-53608728 | None:intergenic | 40.0% | |
| TGTCAGTGTCAGCACATATA+GGG | + | chr4_2:53608909-53608928 | None:intergenic | 40.0% | |
| TTGTCAGTGTCAGCACATAT+AGG | + | chr4_2:53608910-53608929 | None:intergenic | 40.0% | |
| ATCGGCTACAGCAGTTTATT+GGG | - | chr4_2:53608934-53608953 | Msa0606920:intron | 40.0% | |
| ACAGCAGTTTATTGGGCATT+TGG | - | chr4_2:53608941-53608960 | Msa0606920:intron | 40.0% | |
| ! | TGGAAGAAGAGCAAAAGCAT+TGG | + | chr4_2:53608987-53609006 | None:intergenic | 40.0% |
| GCACACCATTATACTTTGTG+TGG | - | chr4_2:53609177-53609196 | Msa0606920:CDS | 40.0% | |
| TTTGTGTGGGAGAAAACAGT+AGG | - | chr4_2:53609191-53609210 | Msa0606920:CDS | 40.0% | |
| TTGTGTGGGAGAAAACAGTA+GGG | - | chr4_2:53609192-53609211 | Msa0606920:CDS | 40.0% | |
| TGCCAGTGGTTATTCCAATT+TGG | - | chr4_2:53609258-53609277 | Msa0606920:intron | 40.0% | |
| ! | GAATTGATGGGTCCAAAGAA+AGG | + | chr4_2:53609302-53609321 | None:intergenic | 40.0% |
| TGTAAACGGTGAAACTGACA+AGG | + | chr4_2:53609340-53609359 | None:intergenic | 40.0% | |
| AAAGGTGAAGATGTGAGCAA+GGG | + | chr4_2:53609372-53609391 | None:intergenic | 40.0% | |
| TAAAGGTGAAGATGTGAGCA+AGG | + | chr4_2:53609373-53609392 | None:intergenic | 40.0% | |
| TCGAGCAGAGGATGATTTAA+AGG | + | chr4_2:53609390-53609409 | None:intergenic | 40.0% | |
| ATATTATACCTGTCGAGCAG+AGG | + | chr4_2:53609402-53609421 | None:intergenic | 40.0% | |
| CTACTGCTCAGTCAAACTAT+TGG | + | chr4_2:53609575-53609594 | None:intergenic | 40.0% | |
| !! | TCCCAAGTTTGTTGGAAGAT+GGG | - | chr4_2:53609918-53609937 | Msa0606920:CDS | 40.0% |
| ACCCATCTTCCAACAAACTT+GGG | + | chr4_2:53609922-53609941 | None:intergenic | 40.0% | |
| TACCCATCTTCCAACAAACT+TGG | + | chr4_2:53609923-53609942 | None:intergenic | 40.0% | |
| !! | AAGTTTGTTGGAAGATGGGT+AGG | - | chr4_2:53609922-53609941 | Msa0606920:CDS | 40.0% |
| ATTGTGGGATTTGGATTTGG+TGG | - | chr4_2:53609985-53610004 | Msa0606920:intron | 40.0% | |
| ! | TTGTGGGATTTGGATTTGGT+GGG | - | chr4_2:53609986-53610005 | Msa0606920:intron | 40.0% |
| ACTCAATATATCAGTGGTGG+TGG | + | chr4_2:53610152-53610171 | None:intergenic | 40.0% | |
| TGTATTGCACGATCTTGATG+AGG | - | chr4_2:53610174-53610193 | Msa0606920:CDS | 40.0% | |
| GGCTTCGATGAATCGATTAA+TGG | - | chr4_2:53610195-53610214 | Msa0606920:CDS | 40.0% | |
| AAGTGAAGGAAAACCACCAC+AGG | - | chr4_2:53606395-53606414 | Msa0606920:three_prime_UTR | 45.0% | |
| TTGGACTTTATGTCCTGTGG+TGG | + | chr4_2:53606411-53606430 | None:intergenic | 45.0% | |
| ! | GTGGTTCTGCTTATGATGCT+TGG | - | chr4_2:53606454-53606473 | Msa0606920:CDS | 45.0% |
| ! | ACCATACTCATTTTCCCAGC+TGG | - | chr4_2:53606652-53606671 | Msa0606920:CDS | 45.0% |
| ! | CCATACTCATTTTCCCAGCT+GGG | - | chr4_2:53606653-53606672 | Msa0606920:CDS | 45.0% |
| ! | CAGTGGTTTGAGGTTCTTGA+TGG | - | chr4_2:53606994-53607013 | Msa0606920:intron | 45.0% |
| !! | AGGTTCTTGATGGACTCCTA+GGG | - | chr4_2:53607004-53607023 | Msa0606920:intron | 45.0% |
| AAGAAAGAGGTCAGAGTAGG+TGG | + | chr4_2:53607120-53607139 | None:intergenic | 45.0% | |
| TGTTGTGGTGTATAGGTGGA+AGG | - | chr4_2:53607661-53607680 | Msa0606920:CDS | 45.0% | |
| AACCCCAAAATACCCTTGGT+AGG | - | chr4_2:53608192-53608211 | Msa0606920:intron | 45.0% | |
| !!! | ACGCCTACCAAGGGTATTTT+GGG | + | chr4_2:53608198-53608217 | None:intergenic | 45.0% |
| AAAATACCCTTGGTAGGCGT+GGG | - | chr4_2:53608198-53608217 | Msa0606920:intron | 45.0% | |
| CTGGATGCCTGAATCTATGA+GGG | + | chr4_2:53608347-53608366 | None:intergenic | 45.0% | |
| ATCCCGACTCAGAGAGTAAA+AGG | - | chr4_2:53608639-53608658 | Msa0606920:intron | 45.0% | |
| GGGAAATAATGCATGCGATG+TGG | - | chr4_2:53608846-53608865 | Msa0606920:CDS | 45.0% | |
| GTGGAAGCCACAAAAGTTCA+AGG | - | chr4_2:53608865-53608884 | Msa0606920:CDS | 45.0% | |
| GCTGACACTGACAATTCCAT+CGG | - | chr4_2:53608916-53608935 | Msa0606920:intron | 45.0% | |
| CAATAAACTGCTGTAGCCGA+TGG | + | chr4_2:53608935-53608954 | None:intergenic | 45.0% | |
| ! | CATCGGCTACAGCAGTTTAT+TGG | - | chr4_2:53608933-53608952 | Msa0606920:intron | 45.0% |
| ! | ATGTCACGGAAGGGTGATTT+TGG | + | chr4_2:53609007-53609026 | None:intergenic | 45.0% |
| AAAATCACCCTTCCGTGACA+TGG | - | chr4_2:53609006-53609025 | Msa0606920:intron | 45.0% | |
| ATAACAGCCATGTCACGGAA+GGG | + | chr4_2:53609016-53609035 | None:intergenic | 45.0% | |
| AATAACAGCCATGTCACGGA+AGG | + | chr4_2:53609017-53609036 | None:intergenic | 45.0% | |
| GATCCAACGGTGGAATTGAT+GGG | + | chr4_2:53609314-53609333 | None:intergenic | 45.0% | |
| AGATCCAACGGTGGAATTGA+TGG | + | chr4_2:53609315-53609334 | None:intergenic | 45.0% | |
| ACTGACAAGGAGAGATCCAA+CGG | + | chr4_2:53609327-53609346 | None:intergenic | 45.0% | |
| AAGGGCTGGGATGATGTAAA+CGG | + | chr4_2:53609354-53609373 | None:intergenic | 45.0% | |
| TAAATCATCCTCTGCTCGAC+AGG | - | chr4_2:53609391-53609410 | Msa0606920:intron | 45.0% | |
| ! | TTTGGAGAAAGTTTCGGGTC+TGG | + | chr4_2:53609735-53609754 | None:intergenic | 45.0% |
| GAACAACCTCCCAAGTTTGT+TGG | - | chr4_2:53609910-53609929 | Msa0606920:CDS | 45.0% | |
| CATCTTCCAACAAACTTGGG+AGG | + | chr4_2:53609919-53609938 | None:intergenic | 45.0% | |
| !! | CTCCCAAGTTTGTTGGAAGA+TGG | - | chr4_2:53609917-53609936 | Msa0606920:CDS | 45.0% |
| TGGGTCCTAATTGTGGGATT+TGG | - | chr4_2:53609976-53609995 | Msa0606920:intron | 45.0% | |
| ! | ATGGTTGGAACAGAAGGTGT+TGG | + | chr4_2:53610087-53610106 | None:intergenic | 45.0% |
| !! | CAAAATTAATTAATTAATAT+TGG | + | chr4_2:53607631-53607650 | None:intergenic | 5.0% |
| !!! | CAATATTAATTAATTAATTT+TGG | - | chr4_2:53607629-53607648 | Msa0606920:CDS | 5.0% |
| !!! | AAATATAGAATTATTTTATT+TGG | + | chr4_2:53607703-53607722 | None:intergenic | 5.0% |
| GTTTAGCTGTGCTTCCAACC+AGG | - | chr4_2:53606476-53606495 | Msa0606920:CDS | 50.0% | |
| CCCAGCTGGGAAAATGAGTA+TGG | + | chr4_2:53606656-53606675 | None:intergenic | 50.0% | |
| !! | GAGGTTCTTGATGGACTCCT+AGG | - | chr4_2:53607003-53607022 | Msa0606920:intron | 50.0% |
| ATGGACTCCTAGGGAAACAC+TGG | - | chr4_2:53607013-53607032 | Msa0606920:intron | 50.0% | |
| CGTTTCTCCAGTGTTTCCCT+AGG | + | chr4_2:53607023-53607042 | None:intergenic | 50.0% | |
| AGGGAAACACTGGAGAAACG+TGG | - | chr4_2:53607023-53607042 | Msa0606920:intron | 50.0% | |
| GGGAAACACTGGAGAAACGT+GGG | - | chr4_2:53607024-53607043 | Msa0606920:intron | 50.0% | |
| ! | GGTGGAAGGAGTGAAGCATT+CGG | - | chr4_2:53607675-53607694 | Msa0606920:CDS | 50.0% |
| ! | GTGGAAGGAGTGAAGCATTC+GGG | - | chr4_2:53607676-53607695 | Msa0606920:CDS | 50.0% |
| !!! | CGCCTACCAAGGGTATTTTG+GGG | + | chr4_2:53608197-53608216 | None:intergenic | 50.0% |
| !!! | CACGCCTACCAAGGGTATTT+TGG | + | chr4_2:53608199-53608218 | None:intergenic | 50.0% |
| CAAAATACCCTTGGTAGGCG+TGG | - | chr4_2:53608197-53608216 | Msa0606920:intron | 50.0% | |
| GCTGGATGCCTGAATCTATG+AGG | + | chr4_2:53608348-53608367 | None:intergenic | 50.0% | |
| CTCTTGGACCTAAGGTCACT+TGG | - | chr4_2:53608570-53608589 | Msa0606920:intron | 50.0% | |
| AAGGTGCAAGTTCGAACCCT+TGG | - | chr4_2:53608689-53608708 | Msa0606920:intron | 50.0% | |
| ! | TGCATTGGTGAGATTGCCAG+TGG | - | chr4_2:53609244-53609263 | Msa0606920:intron | 50.0% |
| TGAAGATGTGAGCAAGGGCT+GGG | + | chr4_2:53609367-53609386 | None:intergenic | 50.0% | |
| ! | AGAAAGTTTCGGGTCTGGTC+TGG | + | chr4_2:53609730-53609749 | None:intergenic | 50.0% |
| TGGTGTGATGCAGAATGCTG+TGG | - | chr4_2:53609888-53609907 | Msa0606920:CDS | 50.0% | |
| AGTGGTGTGGGTCCTAATTG+TGG | - | chr4_2:53609969-53609988 | Msa0606920:intron | 50.0% | |
| GTGGTGTGGGTCCTAATTGT+GGG | - | chr4_2:53609970-53609989 | Msa0606920:intron | 50.0% | |
| !! | TGGGATTTGGATTTGGTGGG+TGG | - | chr4_2:53609989-53610008 | Msa0606920:intron | 50.0% |
| !! | GGGATTTGGATTTGGTGGGT+GGG | - | chr4_2:53609990-53610009 | Msa0606920:intron | 50.0% |
| !! | AAGGTGTTGGTGGAGGACAT+TGG | + | chr4_2:53610074-53610093 | None:intergenic | 50.0% |
| !! | GTTGGAACAGAAGGTGTTGG+TGG | + | chr4_2:53610084-53610103 | None:intergenic | 50.0% |
| !! | TATCAGTGGTGGTGGTGATG+CGG | + | chr4_2:53610144-53610163 | None:intergenic | 50.0% |
| TCCCAGCTGGGAATGCTTTC+TGG | - | chr4_2:53606665-53606684 | Msa0606920:CDS | 55.0% | |
| !! | GCCAGAAAGCATTCCCAGCT+GGG | + | chr4_2:53606669-53606688 | None:intergenic | 55.0% |
| !! | TGCCAGAAAGCATTCCCAGC+TGG | + | chr4_2:53606670-53606689 | None:intergenic | 55.0% |
| ACACTGGAGAAACGTGGGCT+TGG | - | chr4_2:53607029-53607048 | Msa0606920:intron | 55.0% | |
| CACTGGAGAAACGTGGGCTT+GGG | - | chr4_2:53607030-53607049 | Msa0606920:intron | 55.0% | |
| TGCAGCTGTTCTTCACGGTC+AGG | - | chr4_2:53607520-53607539 | Msa0606920:intron | 55.0% | |
| GGACCCATCAATTCCACCGT+TGG | - | chr4_2:53609308-53609327 | Msa0606920:intron | 55.0% | |
| GACAAGGAGAGATCCAACGG+TGG | + | chr4_2:53609324-53609343 | None:intergenic | 55.0% | |
| GTGAAGATGTGAGCAAGGGC+TGG | + | chr4_2:53609368-53609387 | None:intergenic | 55.0% | |
| GTCTGGTCTGGTCTGGTAGA+CGG | + | chr4_2:53609713-53609732 | None:intergenic | 55.0% | |
| ! | ATTTGGTGGGTGGGCCAGTA+TGG | - | chr4_2:53609999-53610018 | Msa0606920:intron | 55.0% |
| !! | GGAACAGAAGGTGTTGGTGG+AGG | + | chr4_2:53610081-53610100 | None:intergenic | 55.0% |
| GGTGGCATGGTTGGAACAGA+AGG | + | chr4_2:53610093-53610112 | None:intergenic | 55.0% | |
| ATTCAGCTGGTGAGGTGGCA+TGG | + | chr4_2:53610106-53610125 | None:intergenic | 55.0% | |
| GTTGCATTCAGCTGGTGAGG+TGG | + | chr4_2:53610111-53610130 | None:intergenic | 55.0% | |
| ATACCCTTGGTAGGCGTGGG+AGG | - | chr4_2:53608201-53608220 | Msa0606920:intron | 60.0% | |
| TTGCCTCCCACGCCTACCAA+GGG | + | chr4_2:53608207-53608226 | None:intergenic | 60.0% | |
| TTTGCCTCCCACGCCTACCA+AGG | + | chr4_2:53608208-53608227 | None:intergenic | 60.0% | |
| ! | GTTTCGGGTCTGGTCTGGTC+TGG | + | chr4_2:53609725-53609744 | None:intergenic | 60.0% |
| AGCTGGTGAGGTGGCATGGT+TGG | + | chr4_2:53610102-53610121 | None:intergenic | 60.0% | |
| GCGGTTGCATTCAGCTGGTG+AGG | + | chr4_2:53610114-53610133 | None:intergenic | 60.0% | |
| AAGGCGCGGTTGCATTCAGC+TGG | + | chr4_2:53610119-53610138 | None:intergenic | 60.0% | |
| !! | TGGTGGTGGTGATGCGGTGA+AGG | + | chr4_2:53610138-53610157 | None:intergenic | 60.0% |
| GGGTCTGGTCTGGTCTGGTC+TGG | + | chr4_2:53609720-53609739 | None:intergenic | 65.0% | |
| ! | GTGGTGATGCGGTGAAGGCG+CGG | + | chr4_2:53610133-53610152 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 53606136 | 53610467 | 53606136 | ID=Msa0606920;Name=Msa0606920 |
| chr4_2 | mRNA | 53606136 | 53610467 | 53606136 | ID=Msa0606920-mRNA-1;Parent=Msa0606920;Name=Msa0606920-mRNA-1;_AED=0.04;_eAED=0.04;_QI=197|1|1|1|1|1|8|306|490 |
| chr4_2 | exon | 53606136 | 53606702 | 53606136 | ID=Msa0606920-mRNA-1:exon:13268;Parent=Msa0606920-mRNA-1 |
| chr4_2 | exon | 53607191 | 53607448 | 53607191 | ID=Msa0606920-mRNA-1:exon:13267;Parent=Msa0606920-mRNA-1 |
| chr4_2 | exon | 53607549 | 53607756 | 53607549 | ID=Msa0606920-mRNA-1:exon:13266;Parent=Msa0606920-mRNA-1 |
| chr4_2 | exon | 53608830 | 53608927 | 53608830 | ID=Msa0606920-mRNA-1:exon:13265;Parent=Msa0606920-mRNA-1 |
| chr4_2 | exon | 53609062 | 53609245 | 53609062 | ID=Msa0606920-mRNA-1:exon:13264;Parent=Msa0606920-mRNA-1 |
| chr4_2 | exon | 53609494 | 53609606 | 53609494 | ID=Msa0606920-mRNA-1:exon:13263;Parent=Msa0606920-mRNA-1 |
| chr4_2 | exon | 53609789 | 53609974 | 53609789 | ID=Msa0606920-mRNA-1:exon:13262;Parent=Msa0606920-mRNA-1 |
| chr4_2 | exon | 53610106 | 53610467 | 53610106 | ID=Msa0606920-mRNA-1:exon:13261;Parent=Msa0606920-mRNA-1 |
| chr4_2 | five_prime_UTR | 53610271 | 53610467 | 53610271 | ID=Msa0606920-mRNA-1:five_prime_utr;Parent=Msa0606920-mRNA-1 |
| chr4_2 | CDS | 53610106 | 53610270 | 53610106 | ID=Msa0606920-mRNA-1:cds;Parent=Msa0606920-mRNA-1 |
| chr4_2 | CDS | 53609789 | 53609974 | 53609789 | ID=Msa0606920-mRNA-1:cds;Parent=Msa0606920-mRNA-1 |
| chr4_2 | CDS | 53609494 | 53609606 | 53609494 | ID=Msa0606920-mRNA-1:cds;Parent=Msa0606920-mRNA-1 |
| chr4_2 | CDS | 53609062 | 53609245 | 53609062 | ID=Msa0606920-mRNA-1:cds;Parent=Msa0606920-mRNA-1 |
| chr4_2 | CDS | 53608830 | 53608927 | 53608830 | ID=Msa0606920-mRNA-1:cds;Parent=Msa0606920-mRNA-1 |
| chr4_2 | CDS | 53607549 | 53607756 | 53607549 | ID=Msa0606920-mRNA-1:cds;Parent=Msa0606920-mRNA-1 |
| chr4_2 | CDS | 53607191 | 53607448 | 53607191 | ID=Msa0606920-mRNA-1:cds;Parent=Msa0606920-mRNA-1 |
| chr4_2 | CDS | 53606442 | 53606702 | 53606442 | ID=Msa0606920-mRNA-1:cds;Parent=Msa0606920-mRNA-1 |
| chr4_2 | three_prime_UTR | 53606136 | 53606441 | 53606136 | ID=Msa0606920-mRNA-1:three_prime_utr;Parent=Msa0606920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
