Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382740 | XP_003603428.2 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 2.37e-104 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382740 | G7JB51 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 1.13e-104 | 306 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa0382740 | 0.819818 | 9.513196e-53 | -8.615850e-47 |
| Msa0025580 | Msa0382740 | 0.838734 | 2.412140e-57 | -8.615850e-47 |
| Msa0029960 | Msa0382740 | 0.829634 | 4.612691e-55 | -8.615850e-47 |
| Msa0032970 | Msa0382740 | 0.808997 | 2.351843e-50 | -8.615850e-47 |
| Msa0032980 | Msa0382740 | 0.815607 | 8.476627e-52 | -8.615850e-47 |
| Msa0033780 | Msa0382740 | 0.824855 | 6.439142e-54 | -8.615850e-47 |
| Msa0050660 | Msa0382740 | 0.825897 | 3.647634e-54 | -8.615850e-47 |
| Msa0050700 | Msa0382740 | 0.824434 | 8.088788e-54 | -8.615850e-47 |
| Msa0050790 | Msa0382740 | 0.812696 | 3.722752e-51 | -8.615850e-47 |
| Msa0057540 | Msa0382740 | 0.817678 | 2.912035e-52 | -8.615850e-47 |
| Msa0067060 | Msa0382740 | 0.812855 | 3.437052e-51 | -8.615850e-47 |
| Msa0073120 | Msa0382740 | 0.816139 | 6.448907e-52 | -8.615850e-47 |
| Msa0091350 | Msa0382740 | 0.828909 | 6.915014e-55 | -8.615850e-47 |
| Msa0091360 | Msa0382740 | 0.803868 | 2.838217e-49 | -8.615850e-47 |
| Msa0093860 | Msa0382740 | 0.840863 | 6.730173e-58 | -8.615850e-47 |
| Msa0098410 | Msa0382740 | 0.801636 | 8.202163e-49 | -8.615850e-47 |
| Msa0113340 | Msa0382740 | 0.806840 | 6.764905e-50 | -8.615850e-47 |
| Msa0115550 | Msa0382740 | 0.824261 | 8.881657e-54 | -8.615850e-47 |
| Msa0121330 | Msa0382740 | 0.836502 | 9.012364e-57 | -8.615850e-47 |
| Msa0127340 | Msa0382740 | 0.826708 | 2.338951e-54 | -8.615850e-47 |
| Msa0128570 | Msa0382740 | 0.817028 | 4.077055e-52 | -8.615850e-47 |
| Msa0140130 | Msa0382740 | 0.807257 | 5.522818e-50 | -8.615850e-47 |
| Msa0140380 | Msa0382740 | 0.819068 | 1.410437e-52 | -8.615850e-47 |
| Msa0141640 | Msa0382740 | 0.820394 | 7.022097e-53 | -8.615850e-47 |
| Msa0146650 | Msa0382740 | 0.826921 | 2.080882e-54 | -8.615850e-47 |
| Msa0154620 | Msa0382740 | 0.800136 | 1.660173e-48 | -8.615850e-47 |
| Msa0156050 | Msa0382740 | 0.810400 | 1.174821e-50 | -8.615850e-47 |
| Msa0156090 | Msa0382740 | 0.801976 | 6.982315e-49 | -8.615850e-47 |
| Msa0161930 | Msa0382740 | 0.805137 | 1.543794e-49 | -8.615850e-47 |
| Msa0165830 | Msa0382740 | 0.815635 | 8.356069e-52 | -8.615850e-47 |
| Msa0166170 | Msa0382740 | 0.848480 | 5.966934e-60 | -8.615850e-47 |
| Msa0170070 | Msa0382740 | 0.802237 | 6.171999e-49 | -8.615850e-47 |
| Msa0188610 | Msa0382740 | 0.802390 | 5.738268e-49 | -8.615850e-47 |
| Msa0213610 | Msa0382740 | 0.805201 | 1.496722e-49 | -8.615850e-47 |
| Msa0367520 | Msa0382740 | 0.808831 | 2.553240e-50 | -8.615850e-47 |
| Msa0368860 | Msa0382740 | 0.801703 | 7.945538e-49 | -8.615850e-47 |
| Msa0371190 | Msa0382740 | 0.805930 | 1.052276e-49 | -8.615850e-47 |
| Msa0373170 | Msa0382740 | 0.815674 | 8.189060e-52 | -8.615850e-47 |
| Msa0380540 | Msa0382740 | 0.817874 | 2.629813e-52 | -8.615850e-47 |
| Msa0381730 | Msa0382740 | 0.844675 | 6.528940e-59 | -8.615850e-47 |
| Msa0382740 | Msa0382770 | 0.982566 | 2.006899e-155 | -8.615850e-47 |
| Msa0382740 | Msa0415140 | 0.822471 | 2.327151e-53 | -8.615850e-47 |
| Msa0382740 | Msa0415450 | 0.813043 | 3.124510e-51 | -8.615850e-47 |
| Msa0382740 | Msa0419450 | 0.801842 | 7.438432e-49 | -8.615850e-47 |
| Msa0382740 | Msa0420670 | 0.843590 | 1.275991e-58 | -8.615850e-47 |
| Msa0382740 | Msa0421750 | 0.813190 | 2.901188e-51 | -8.615850e-47 |
| Msa0382740 | Msa0422050 | 0.802538 | 5.350473e-49 | -8.615850e-47 |
| Msa0382740 | Msa0430080 | 0.833840 | 4.231172e-56 | -8.615850e-47 |
| Msa0382740 | Msa0430170 | 0.830217 | 3.326014e-55 | -8.615850e-47 |
| Msa0382740 | Msa0430480 | 0.810051 | 1.396771e-50 | -8.615850e-47 |
| Msa0382740 | Msa0431200 | 0.837309 | 5.610306e-57 | -8.615850e-47 |
| Msa0382740 | Msa0433150 | 0.801021 | 1.095753e-48 | -8.615850e-47 |
| Msa0382740 | Msa0433760 | 0.809202 | 2.125911e-50 | -8.615850e-47 |
| Msa0382740 | Msa0443410 | 0.822037 | 2.934286e-53 | -8.615850e-47 |
| Msa0382740 | Msa0460070 | 0.815553 | 8.716522e-52 | -8.615850e-47 |
| Msa0382740 | Msa0466520 | 0.846924 | 1.599450e-59 | -8.615850e-47 |
| Msa0382740 | Msa0467690 | 0.817444 | 3.286693e-52 | -8.615850e-47 |
| Msa0382740 | Msa0476280 | 0.843476 | 1.368803e-58 | -8.615850e-47 |
| Msa0382740 | Msa0477630 | 0.811423 | 7.054254e-51 | -8.615850e-47 |
| Msa0382740 | Msa0482080 | 0.821871 | 3.207105e-53 | -8.615850e-47 |
| Msa0382740 | Msa0500450 | 0.825331 | 4.969996e-54 | -8.615850e-47 |
| Msa0382740 | Msa0507920 | 0.800361 | 1.494168e-48 | -8.615850e-47 |
| Msa0382740 | Msa0512530 | 0.841565 | 4.398211e-58 | -8.615850e-47 |
| Msa0382740 | Msa0513080 | 0.834978 | 2.191934e-56 | -8.615850e-47 |
| Msa0382740 | Msa0513560 | 0.829757 | 4.304685e-55 | -8.615850e-47 |
| Msa0382740 | Msa0514020 | 0.807682 | 4.486925e-50 | -8.615850e-47 |
| Msa0382740 | Msa0520260 | 0.840406 | 8.862565e-58 | -8.615850e-47 |
| Msa0382740 | Msa0520870 | 0.822818 | 1.932466e-53 | -8.615850e-47 |
| Msa0382740 | Msa0521320 | 0.815113 | 1.091668e-51 | -8.615850e-47 |
| Msa0382740 | Msa0521680 | 0.809051 | 2.290729e-50 | -8.615850e-47 |
| Msa0382740 | Msa0524320 | 0.816999 | 4.140115e-52 | -8.615850e-47 |
| Msa0382740 | Msa0524430 | 0.817157 | 3.813686e-52 | -8.615850e-47 |
| Msa0382740 | Msa0524520 | 0.811647 | 6.306669e-51 | -8.615850e-47 |
| Msa0382740 | Msa0524800 | 0.985736 | 1.669940e-164 | -8.615850e-47 |
| Msa0382740 | Msa0525000 | 0.998979 | 1.786027e-284 | -8.615850e-47 |
| Msa0382740 | Msa0534100 | 0.840617 | 7.804051e-58 | -8.615850e-47 |
| Msa0382740 | Msa0537990 | 0.817433 | 3.305983e-52 | -8.615850e-47 |
| Msa0382740 | Msa0554300 | 0.820706 | 5.953755e-53 | -8.615850e-47 |
| Msa0382740 | Msa0557850 | 0.802940 | 4.420438e-49 | -8.615850e-47 |
| Msa0382740 | Msa0561560 | 0.853169 | 2.853092e-61 | -8.615850e-47 |
| Msa0382740 | Msa0563740 | 0.820712 | 5.935019e-53 | -8.615850e-47 |
| Msa0382740 | Msa0563900 | 0.809780 | 1.597718e-50 | -8.615850e-47 |
| Msa0382740 | Msa0563940 | 0.828334 | 9.526543e-55 | -8.615850e-47 |
| Msa0382740 | Msa0563980 | 0.813639 | 2.311527e-51 | -8.615850e-47 |
| Msa0382740 | Msa0564980 | 0.813641 | 2.309909e-51 | -8.615850e-47 |
| Msa0382740 | Msa0570010 | 0.807168 | 5.766801e-50 | -8.615850e-47 |
| Msa0382740 | Msa0571620 | 0.804274 | 2.337181e-49 | -8.615850e-47 |
| Msa0382740 | Msa0577280 | 0.820869 | 5.459992e-53 | -8.615850e-47 |
| Msa0382740 | Msa0577330 | 0.822746 | 2.008809e-53 | -8.615850e-47 |
| Msa0382740 | Msa0585340 | 0.807719 | 4.405901e-50 | -8.615850e-47 |
| Msa0382740 | Msa0590200 | 0.825883 | 3.676630e-54 | -8.615850e-47 |
| Msa0382740 | Msa0606100 | 0.838608 | 2.599490e-57 | -8.615850e-47 |
| Msa0382740 | Msa0606920 | 0.805427 | 1.341663e-49 | -8.615850e-47 |
| Msa0382740 | Msa0608350 | 0.814759 | 1.307988e-51 | -8.615850e-47 |
| Msa0382740 | Msa0612520 | 0.830398 | 3.003459e-55 | -8.615850e-47 |
| Msa0382740 | Msa0613630 | 0.807766 | 4.305049e-50 | -8.615850e-47 |
| Msa0382740 | Msa0615630 | 0.802319 | 5.936089e-49 | -8.615850e-47 |
| Msa0382740 | Msa0620500 | 0.829213 | 5.838557e-55 | -8.615850e-47 |
| Msa0382740 | Msa0622920 | 0.820239 | 7.618603e-53 | -8.615850e-47 |
| Msa0382740 | Msa0630660 | 0.831253 | 1.853372e-55 | -8.615850e-47 |
| Msa0382740 | Msa0645340 | 0.839308 | 1.712844e-57 | -8.615850e-47 |
| Msa0382740 | Msa0647050 | 0.846967 | 1.557218e-59 | -8.615850e-47 |
| Msa0382740 | Msa0647440 | 0.811216 | 7.821066e-51 | -8.615850e-47 |
| Msa0382740 | Msa0648760 | 0.821548 | 3.808725e-53 | -8.615850e-47 |
| Msa0382740 | Msa0653160 | 0.832260 | 1.046333e-55 | -8.615850e-47 |
| Msa0382740 | Msa0654740 | 0.825232 | 5.245539e-54 | -8.615850e-47 |
| Msa0382740 | Msa0668900 | 0.846738 | 1.798545e-59 | -8.615850e-47 |
| Msa0382740 | Msa0687090 | 0.844335 | 8.055378e-59 | -8.615850e-47 |
| Msa0382740 | Msa0690320 | 0.815413 | 9.366045e-52 | -8.615850e-47 |
| Msa0382740 | Msa0691270 | 0.835673 | 1.463127e-56 | -8.615850e-47 |
| Msa0382740 | Msa0695560 | 0.819142 | 1.356758e-52 | -8.615850e-47 |
| Msa0382740 | Msa0698730 | 0.818908 | 1.533439e-52 | -8.615850e-47 |
| Msa0382740 | Msa0700500 | 0.802185 | 6.324731e-49 | -8.615850e-47 |
| Msa0382740 | Msa0711010 | 0.840253 | 9.721803e-58 | -8.615850e-47 |
| Msa0382740 | Msa0713960 | 0.827658 | 1.385632e-54 | -8.615850e-47 |
| Msa0382740 | Msa0714520 | 0.801385 | 9.230792e-49 | -8.615850e-47 |
| Msa0382740 | Msa0717900 | 0.809765 | 1.609854e-50 | -8.615850e-47 |
| Msa0382740 | Msa0718040 | 0.818586 | 1.814333e-52 | -8.615850e-47 |
| Msa0382740 | Msa0736890 | 0.806483 | 8.049657e-50 | -8.615850e-47 |
| Msa0382740 | Msa0740710 | 0.805444 | 1.331040e-49 | -8.615850e-47 |
| Msa0382740 | Msa0747740 | 0.808329 | 3.267593e-50 | -8.615850e-47 |
| Msa0382740 | Msa0758650 | 0.801815 | 7.536790e-49 | -8.615850e-47 |
| Msa0382740 | Msa0778550 | 0.816328 | 5.851747e-52 | -8.615850e-47 |
| Msa0382740 | Msa0816080 | 0.812396 | 4.329190e-51 | -8.615850e-47 |
| Msa0382740 | Msa0835350 | 0.846134 | 2.627569e-59 | -8.615850e-47 |
| Msa0382740 | Msa0901150 | 0.837938 | 3.868371e-57 | -8.615850e-47 |
| Msa0382740 | Msa0909760 | 0.846344 | 2.304648e-59 | -8.615850e-47 |
| Msa0382740 | Msa0931590 | 0.804934 | 1.702212e-49 | -8.615850e-47 |
| Msa0382740 | Msa0966710 | 0.841480 | 4.631420e-58 | -8.615850e-47 |
| Msa0382740 | Msa1000970 | 0.847999 | 8.103927e-60 | -8.615850e-47 |
| Msa0382740 | Msa1008670 | 0.816477 | 5.420518e-52 | -8.615850e-47 |
| Msa0382740 | Msa1008680 | 0.803950 | 2.729576e-49 | -8.615850e-47 |
| Msa0382740 | Msa1033920 | 0.821630 | 3.644810e-53 | -8.615850e-47 |
| Msa0382740 | Msa1035650 | 0.802952 | 4.394591e-49 | -8.615850e-47 |
| Msa0382740 | Msa1042160 | 0.811513 | 6.742024e-51 | -8.615850e-47 |
| Msa0382740 | Msa1042190 | 0.807510 | 4.880164e-50 | -8.615850e-47 |
| Msa0382740 | Msa1060900 | 0.819617 | 1.056907e-52 | -8.615850e-47 |
| Msa0382740 | Msa1070210 | 0.800653 | 1.302929e-48 | -8.615850e-47 |
| Msa0382740 | Msa1076020 | 0.808593 | 2.870572e-50 | -8.615850e-47 |
| Msa0382740 | Msa1076820 | 0.829229 | 5.785213e-55 | -8.615850e-47 |
| Msa0382740 | Msa1078880 | 0.838999 | 2.059060e-57 | -8.615850e-47 |
| Msa0382740 | Msa1078970 | 0.838807 | 2.309104e-57 | -8.615850e-47 |
| Msa0382740 | Msa1079640 | 0.819024 | 1.443116e-52 | -8.615850e-47 |
| Msa0382740 | Msa1082380 | 0.838138 | 3.436652e-57 | -8.615850e-47 |
| Msa0382740 | Msa1116190 | 0.817492 | 3.206067e-52 | -8.615850e-47 |
| Msa0382740 | Msa1116660 | 0.838121 | 3.471201e-57 | -8.615850e-47 |
| Msa0382740 | Msa1116740 | 0.832305 | 1.019973e-55 | -8.615850e-47 |
| Msa0382740 | Msa1124470 | 0.812872 | 3.407319e-51 | -8.615850e-47 |
| Msa0382740 | Msa1127280 | 0.824542 | 7.629903e-54 | -8.615850e-47 |
| Msa0382740 | Msa1139050 | 0.801464 | 8.894351e-49 | -8.615850e-47 |
| Msa0382740 | Msa1148630 | 0.800381 | 1.480161e-48 | -8.615850e-47 |
| Msa0382740 | Msa1149450 | 0.819070 | 1.408520e-52 | -8.615850e-47 |
| Msa0382740 | Msa1162880 | 0.846887 | 1.637813e-59 | -8.615850e-47 |
| Msa0382740 | Msa1165480 | 0.828744 | 7.583160e-55 | -8.615850e-47 |
| Msa0382740 | Msa1167470 | 0.805915 | 1.060020e-49 | -8.615850e-47 |
| Msa0382740 | Msa1169190 | 0.837309 | 5.607081e-57 | -8.615850e-47 |
| Msa0382740 | Msa1209320 | 0.828554 | 8.430645e-55 | -8.615850e-47 |
| Msa0382740 | Msa1209720 | 0.801295 | 9.630990e-49 | -8.615850e-47 |
| Msa0382740 | Msa1212700 | 0.826611 | 2.466325e-54 | -8.615850e-47 |
| Msa0382740 | Msa1212920 | 0.833857 | 4.190609e-56 | -8.615850e-47 |
| Msa0382740 | Msa1213830 | 0.826369 | 2.817268e-54 | -8.615850e-47 |
| Msa0382740 | Msa1214350 | 0.838107 | 3.499238e-57 | -8.615850e-47 |
| Msa0382740 | Msa1215980 | 0.830570 | 2.726832e-55 | -8.615850e-47 |
| Msa0382740 | Msa1228630 | 0.810281 | 1.246168e-50 | -8.615850e-47 |
| Msa0382740 | Msa1254540 | 0.825058 | 5.765449e-54 | -8.615850e-47 |
| Msa0382740 | Msa1260710 | 0.802330 | 5.904464e-49 | -8.615850e-47 |
| Msa0382740 | Msa1262570 | 0.815329 | 9.772844e-52 | -8.615850e-47 |
| Msa0382740 | Msa1263740 | 0.817909 | 2.581517e-52 | -8.615850e-47 |
| Msa0382740 | Msa1263780 | 0.838229 | 3.254839e-57 | -8.615850e-47 |
| Msa0382740 | Msa1268630 | 0.819803 | 9.588146e-53 | -8.615850e-47 |
| Msa0382740 | Msa1294790 | 0.815911 | 7.253740e-52 | -8.615850e-47 |
| Msa0382740 | Msa1299980 | 0.840646 | 7.672838e-58 | -8.615850e-47 |
| Msa0382740 | Msa1300460 | 0.811769 | 5.932689e-51 | -8.615850e-47 |
| Msa0382740 | Msa1331650 | 0.831829 | 1.337015e-55 | -8.615850e-47 |
| Msa0382740 | Msa1339170 | 0.820725 | 5.893852e-53 | -8.615850e-47 |
| Msa0382740 | Msa1342810 | 0.840849 | 6.787889e-58 | -8.615850e-47 |
| Msa0382740 | Msa1359980 | 0.822918 | 1.831655e-53 | -8.615850e-47 |
| Msa0382740 | Msa1361930 | 0.826927 | 2.073139e-54 | -8.615850e-47 |
| Msa0382740 | Msa1364410 | 0.843897 | 1.055971e-58 | -8.615850e-47 |
| Msa0382740 | Msa1367520 | 0.802923 | 4.456041e-49 | -8.615850e-47 |
| Msa0382740 | Msa1367840 | 0.814968 | 1.175526e-51 | -8.615850e-47 |
| Msa0382740 | Msa1377530 | 0.813434 | 2.564777e-51 | -8.615850e-47 |
| Msa0382740 | Msa1383310 | 0.829586 | 4.737382e-55 | -8.615850e-47 |
| Msa0382740 | Msa1400010 | 0.837479 | 5.073943e-57 | -8.615850e-47 |
| Msa0382740 | Msa1404150 | 0.800837 | 1.194849e-48 | -8.615850e-47 |
| Msa0382740 | Msa1406720 | 0.845984 | 2.887347e-59 | -8.615850e-47 |
| Msa0382740 | Msa1409410 | 0.813555 | 2.411765e-51 | -8.615850e-47 |
| Msa0382740 | Msa1424590 | 0.808923 | 2.439822e-50 | -8.615850e-47 |
| Msa0382740 | Msa1434640 | 0.849484 | 3.138557e-60 | -8.615850e-47 |
| Msa0382740 | Msa1440630 | 0.812127 | 4.956052e-51 | -8.615850e-47 |
| Msa0341680 | Msa0382740 | 0.834697 | 2.580686e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382740 | MtrunA17_Chr3g0138031 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 2.18e-108 | 306 |
| Msa0382740 | MtrunA17_Chr4g0003701 | 61.111 | 162 | 47 | 4 | 1 | 162 | 1 | 146 | 1.64e-55 | 172 |
| Msa0382740 | MtrunA17_Chr4g0063351 | 43.030 | 165 | 51 | 6 | 5 | 161 | 6 | 135 | 3.60e-33 | 114 |
| Msa0382740 | MtrunA17_Chr2g0306881 | 36.943 | 157 | 58 | 3 | 5 | 160 | 6 | 122 | 6.33e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382740 | AT3G15680.2 | 60.819 | 171 | 58 | 5 | 1 | 169 | 1 | 164 | 4.49e-61 | 187 |
| Msa0382740 | AT3G15680.1 | 60.819 | 171 | 58 | 5 | 1 | 169 | 1 | 164 | 4.49e-61 | 187 |
| Msa0382740 | AT5G25490.2 | 62.791 | 172 | 50 | 5 | 1 | 164 | 1 | 166 | 1.43e-55 | 173 |
| Msa0382740 | AT5G25490.1 | 62.791 | 172 | 50 | 5 | 1 | 164 | 1 | 166 | 1.43e-55 | 173 |
| Msa0382740 | AT2G26695.1 | 40.764 | 157 | 65 | 5 | 5 | 161 | 6 | 134 | 2.05e-32 | 113 |
| Msa0382740 | AT2G26695.2 | 40.764 | 157 | 65 | 5 | 5 | 161 | 6 | 134 | 2.05e-32 | 113 |
| Msa0382740 | AT2G17975.1 | 30.769 | 169 | 80 | 6 | 3 | 157 | 5 | 150 | 4.69e-16 | 73.9 |
Find 86 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGGCGGCGCCGTTGATTT+TGG | 0.178200 | 3_1:-85494496 | Msa0382740:CDS |
| AGGAGGGACTTGAATAATTT+TGG | 0.217231 | 3_1:-85494869 | None:intergenic |
| CTCTCTCAATTATCTCTTCT+TGG | 0.242787 | 3_1:+85493603 | None:intergenic |
| GAGAAGAGTAATTGAGATTA+AGG | 0.253953 | 3_1:+85494832 | None:intergenic |
| TTGAGATCACCATACGGTTT+TGG | 0.292602 | 3_1:-85494274 | Msa0382740:CDS |
| TTTACTTACCTCACTTAGTT+TGG | 0.293285 | 3_1:+85494733 | None:intergenic |
| CCAGCTAGCTAGGAATCTTT+AGG | 0.320270 | 3_1:-85493498 | Msa0382740:three_prime_UTR |
| GGGGAGTCAAGAATGATTTC+TGG | 0.322815 | 3_1:-85494520 | Msa0382740:CDS |
| TTGAGAAGTTCACGATAAAT+AGG | 0.332528 | 3_1:+85493799 | None:intergenic |
| TCGGTAGCATTCCATTCTAT+TGG | 0.379779 | 3_1:+85493859 | None:intergenic |
| GGCTCCTTTCTTGGTGGAAG+AGG | 0.386495 | 3_1:-85494472 | Msa0382740:CDS |
| GAGAAGGTATCAATATCCTT+AGG | 0.387497 | 3_1:+85494325 | None:intergenic |
| ACTCGCCCCGGCTGGAAATC+CGG | 0.405258 | 3_1:-85494223 | Msa0382740:CDS |
| GTGCCTCCACTCGCCCCGGC+TGG | 0.416254 | 3_1:-85494231 | Msa0382740:CDS |
| TTATCGTGAACTTCTCAATC+TGG | 0.418523 | 3_1:-85493794 | Msa0382740:intron |
| GGGCCGGTGGTGAAAGGAAA+AGG | 0.421977 | 3_1:+85494439 | None:intergenic |
| CAGTCACCAGGACGGACATC+AGG | 0.429559 | 3_1:+85494418 | None:intergenic |
| CTGATGTCCGTCCTGGTGAC+TGG | 0.431260 | 3_1:-85494417 | Msa0382740:CDS |
| AGATGAGCAGACCAGGAGAT+TGG | 0.434758 | 3_1:-85494600 | Msa0382740:CDS |
| GTCCTGCAGTTCCAATCTCC+TGG | 0.444104 | 3_1:+85494589 | None:intergenic |
| CTCTTCTTTGAAAGTTGAGG+TGG | 0.445847 | 3_1:+85494560 | None:intergenic |
| GGCACCACATTTGAAGCAGC+TGG | 0.455963 | 3_1:+85494348 | None:intergenic |
| GGAGGAGGCAGCGCCGGTGG+TGG | 0.457413 | 3_1:-85494253 | Msa0382740:CDS |
| TTTGAAGCAGCTGGAGCGGC+TGG | 0.457465 | 3_1:+85494357 | None:intergenic |
| CGCTCCAGCTGCTTCAAATG+TGG | 0.474359 | 3_1:-85494352 | Msa0382740:CDS |
| CCTAAAGATTCCTAGCTAGC+TGG | 0.477217 | 3_1:+85493498 | None:intergenic |
| TTTCTTGTATCCAGCTAGCT+AGG | 0.477621 | 3_1:-85493508 | Msa0382740:three_prime_UTR |
| CTTCAAATGTGGTGCCCCTA+AGG | 0.478199 | 3_1:-85494341 | Msa0382740:CDS |
| CAGTCACCGGATTTCCAGCC+GGG | 0.479965 | 3_1:+85494217 | None:intergenic |
| CCGGCTGGAAATCCGGTGAC+TGG | 0.485260 | 3_1:-85494216 | Msa0382740:CDS |
| AGAGCCTCTTCCACCAAGAA+AGG | 0.496788 | 3_1:+85494468 | None:intergenic |
| GCATAACTTCGCCAATAGAA+TGG | 0.497407 | 3_1:-85493870 | Msa0382740:CDS |
| CTTCCAGTACTAGATTCCCT+TGG | 0.497781 | 3_1:+85493827 | None:intergenic |
| ATTCTCTTCTTTGAAAGTTG+AGG | 0.498262 | 3_1:+85494557 | None:intergenic |
| TTTGGTGGCTCCTTTCTTGG+TGG | 0.500076 | 3_1:-85494478 | Msa0382740:CDS |
| AGCAGAAAGATGAGCAGACC+AGG | 0.504369 | 3_1:-85494607 | Msa0382740:exon |
| CACATTTGAAGCAGCTGGAG+CGG | 0.504933 | 3_1:+85494353 | None:intergenic |
| GGCCGGTGGTGAAAGGAAAA+GGG | 0.509497 | 3_1:+85494440 | None:intergenic |
| AGAAGGTATCAATATCCTTA+GGG | 0.509984 | 3_1:+85494326 | None:intergenic |
| GACCAGGAGATTGGAACTGC+AGG | 0.511105 | 3_1:-85494591 | Msa0382740:CDS |
| GCTACCGATGCAACGGTCCA+AGG | 0.513927 | 3_1:-85493844 | Msa0382740:CDS |
| GGATTTCCAGCCGGGGCGAG+TGG | 0.514801 | 3_1:+85494225 | None:intergenic |
| AGAATGATTTCTGGCGGCGG+CGG | 0.516918 | 3_1:-85494511 | Msa0382740:CDS |
| GCGAGTGGAGGCACCACCAC+CGG | 0.520780 | 3_1:+85494240 | None:intergenic |
| CTTACCTCACTTAGTTTGGA+AGG | 0.522107 | 3_1:+85494737 | None:intergenic |
| GTCTGAGGAGTCAGAGGAGA+AGG | 0.523791 | 3_1:+85494309 | None:intergenic |
| CCAGTCACCGGATTTCCAGC+CGG | 0.530047 | 3_1:+85494216 | None:intergenic |
| TTCTTGACTCCCCACATCGT+TGG | 0.531867 | 3_1:+85494530 | None:intergenic |
| ACCGGCCCTGATGTCCGTCC+TGG | 0.532481 | 3_1:-85494424 | Msa0382740:CDS |
| GGTCCAAGGGAATCTAGTAC+TGG | 0.534715 | 3_1:-85493830 | Msa0382740:CDS |
| TTTGGAGGAGGCAGCGCCGG+TGG | 0.535377 | 3_1:-85494256 | Msa0382740:CDS |
| GAGAATCTTGCCAACGATGT+GGG | 0.536610 | 3_1:-85494540 | Msa0382740:CDS |
| CTAGCTAGGAATCTTTAGGT+TGG | 0.539572 | 3_1:-85493494 | Msa0382740:three_prime_UTR |
| GGTGACTGGTATTGTACTGT+TGG | 0.542639 | 3_1:-85494403 | Msa0382740:CDS |
| TGGCGCTGATTAGTGTATCT+CGG | 0.545741 | 3_1:-85493448 | Msa0382740:three_prime_UTR |
| ACATCAGGGCCGGTGGTGAA+AGG | 0.548866 | 3_1:+85494433 | None:intergenic |
| ATTCCCTTGGACCGTTGCAT+CGG | 0.549976 | 3_1:+85493840 | None:intergenic |
| TTTCCAGCCGGGGCGAGTGG+AGG | 0.551998 | 3_1:+85494228 | None:intergenic |
| CTTAGTTTGGAAGGTAGTGA+TGG | 0.553592 | 3_1:+85494746 | None:intergenic |
| AAGAGTAATTGAGATTAAGG+TGG | 0.559698 | 3_1:+85494835 | None:intergenic |
| CCGGTGACTGGATATGCACC+AGG | 0.562370 | 3_1:-85494204 | Msa0382740:intron |
| CTGCCTCCTCCAAAACCGTA+TGG | 0.574316 | 3_1:+85494265 | None:intergenic |
| ACCAGGACGGACATCAGGGC+CGG | 0.576233 | 3_1:+85494423 | None:intergenic |
| AAAGGAGCCACCAAAATCAA+CGG | 0.591777 | 3_1:+85494486 | None:intergenic |
| CTACCGATGCAACGGTCCAA+GGG | 0.596798 | 3_1:-85493843 | Msa0382740:CDS |
| GGTGGTGCCTCCACTCGCCC+CGG | 0.597153 | 3_1:-85494235 | Msa0382740:CDS |
| CCTGGTGCATATCCAGTCAC+CGG | 0.599174 | 3_1:+85494204 | None:intergenic |
| AGAGAATCTTGCCAACGATG+TGG | 0.600788 | 3_1:-85494541 | Msa0382740:CDS |
| AGAATCTTGCCAACGATGTG+GGG | 0.604150 | 3_1:-85494539 | Msa0382740:CDS |
| CAATAATCGTGGCATGTCTG+AGG | 0.609735 | 3_1:+85494294 | None:intergenic |
| TGGCATGTCTGAGGAGTCAG+AGG | 0.612841 | 3_1:+85494303 | None:intergenic |
| AGGACGGACATCAGGGCCGG+TGG | 0.617823 | 3_1:+85494426 | None:intergenic |
| TCAAGAATGATTTCTGGCGG+CGG | 0.619694 | 3_1:-85494514 | Msa0382740:CDS |
| ATGGAATGCTACCGATGCAA+CGG | 0.621720 | 3_1:-85493851 | Msa0382740:CDS |
| TATTGTACTGTTGGAAACTG+TGG | 0.623871 | 3_1:-85494394 | Msa0382740:CDS |
| CGATTATTGAGATCACCATA+CGG | 0.625229 | 3_1:-85494280 | Msa0382740:CDS |
| CAAGAAGAGATAATTGAGAG+AGG | 0.626553 | 3_1:-85493602 | Msa0382740:three_prime_UTR |
| AGTCACCAGGACGGACATCA+GGG | 0.629819 | 3_1:+85494419 | None:intergenic |
| GCCGGTGGTGAAAGGAAAAG+GGG | 0.632818 | 3_1:+85494441 | None:intergenic |
| ACTACCTTCCAAACTAAGTG+AGG | 0.639319 | 3_1:-85494741 | Msa0382740:intron |
| ACAGTACAATACCAGTCACC+AGG | 0.642353 | 3_1:+85494406 | None:intergenic |
| GAGTCAAGAATGATTTCTGG+CGG | 0.656995 | 3_1:-85494517 | Msa0382740:CDS |
| TACAATACCAGTCACCAGGA+CGG | 0.657561 | 3_1:+85494410 | None:intergenic |
| TATGGTGATCTCAATAATCG+TGG | 0.671531 | 3_1:+85494283 | None:intergenic |
| GAAGGTATCAATATCCTTAG+GGG | 0.684912 | 3_1:+85494327 | None:intergenic |
| AGTCACCGGATTTCCAGCCG+GGG | 0.690621 | 3_1:+85494218 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTATAAGTTCCAAATT+AGG | + | chr3_1:85494084-85494103 | None:intergenic | 15.0% |
| !! | ATATACATCTAAAAATGAAT+TGG | + | chr3_1:85494477-85494496 | None:intergenic | 15.0% |
| !! | CTGGAATTAAAAATAAAAAA+AGG | + | chr3_1:85494588-85494607 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATTTTTAATTCC+AGG | - | chr3_1:85494586-85494605 | Msa0382740:CDS | 15.0% |
| !! | TATATTATAAGTTCCAAATT+AGG | + | chr3_1:85494084-85494103 | None:intergenic | 15.0% |
| !! | ATATACATCTAAAAATGAAT+TGG | + | chr3_1:85494477-85494496 | None:intergenic | 15.0% |
| !! | CTGGAATTAAAAATAAAAAA+AGG | + | chr3_1:85494588-85494607 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATTTTTAATTCC+AGG | - | chr3_1:85494586-85494605 | Msa0382740:CDS | 15.0% |
| !! | GATACTTCTTATAAATATTG+TGG | - | chr3_1:85494151-85494170 | Msa0382740:intron | 20.0% |
| !!! | CATTTTTATGAGATTTTGTT+AGG | + | chr3_1:85494182-85494201 | None:intergenic | 20.0% |
| !! | CTAACAAAATCTCATAAAAA+TGG | - | chr3_1:85494180-85494199 | Msa0382740:intron | 20.0% |
| !! | TTTCATTTGTCTCATTATAA+GGG | + | chr3_1:85494280-85494299 | None:intergenic | 20.0% |
| !! | TGCATAAAAAATATCAGAAT+TGG | + | chr3_1:85494500-85494519 | None:intergenic | 20.0% |
| !! | AAAAATAAGTAACTATCTCT+AGG | + | chr3_1:85494655-85494674 | None:intergenic | 20.0% |
| !!! | TAGAGATAGTTACTTATTTT+TGG | - | chr3_1:85494654-85494673 | Msa0382740:intron | 20.0% |
| !!! | GAATATTTTGATTTTGAGTA+TGG | - | chr3_1:85494748-85494767 | Msa0382740:five_prime_UTR | 20.0% |
| !! | GATACTTCTTATAAATATTG+TGG | - | chr3_1:85494151-85494170 | Msa0382740:intron | 20.0% |
| !!! | CATTTTTATGAGATTTTGTT+AGG | + | chr3_1:85494182-85494201 | None:intergenic | 20.0% |
| !! | CTAACAAAATCTCATAAAAA+TGG | - | chr3_1:85494180-85494199 | Msa0382740:intron | 20.0% |
| !! | TTTCATTTGTCTCATTATAA+GGG | + | chr3_1:85494280-85494299 | None:intergenic | 20.0% |
| !! | TGCATAAAAAATATCAGAAT+TGG | + | chr3_1:85494500-85494519 | None:intergenic | 20.0% |
| !! | AAAAATAAGTAACTATCTCT+AGG | + | chr3_1:85494655-85494674 | None:intergenic | 20.0% |
| !!! | TAGAGATAGTTACTTATTTT+TGG | - | chr3_1:85494654-85494673 | Msa0382740:intron | 20.0% |
| !!! | GAATATTTTGATTTTGAGTA+TGG | - | chr3_1:85494748-85494767 | Msa0382740:five_prime_UTR | 20.0% |
| ! | CTTCTTATAAATATTGTGGT+TGG | - | chr3_1:85494155-85494174 | Msa0382740:intron | 25.0% |
| ! | GTTTCATTTGTCTCATTATA+AGG | + | chr3_1:85494281-85494300 | None:intergenic | 25.0% |
| !!! | ATTTTGATTTTGAGTATGGT+TGG | - | chr3_1:85494752-85494771 | Msa0382740:five_prime_UTR | 25.0% |
| !! | GATACTGAAAAAAAGTACAT+GGG | + | chr3_1:85494821-85494840 | None:intergenic | 25.0% |
| !! | TGATACTGAAAAAAAGTACA+TGG | + | chr3_1:85494822-85494841 | None:intergenic | 25.0% |
| ! | CTTCTTATAAATATTGTGGT+TGG | - | chr3_1:85494155-85494174 | Msa0382740:intron | 25.0% |
| ! | GTTTCATTTGTCTCATTATA+AGG | + | chr3_1:85494281-85494300 | None:intergenic | 25.0% |
| !!! | ATTTTGATTTTGAGTATGGT+TGG | - | chr3_1:85494752-85494771 | Msa0382740:five_prime_UTR | 25.0% |
| !! | GATACTGAAAAAAAGTACAT+GGG | + | chr3_1:85494821-85494840 | None:intergenic | 25.0% |
| !! | TGATACTGAAAAAAAGTACA+TGG | + | chr3_1:85494822-85494841 | None:intergenic | 25.0% |
| AAGAGTAATTGAGATTAAGG+TGG | + | chr3_1:85493388-85493407 | None:intergenic | 30.0% | |
| GAGAAGAGTAATTGAGATTA+AGG | + | chr3_1:85493391-85493410 | None:intergenic | 30.0% | |
| TTTACTTACCTCACTTAGTT+TGG | + | chr3_1:85493490-85493509 | None:intergenic | 30.0% | |
| ! | ATTCTCTTCTTTGAAAGTTG+AGG | + | chr3_1:85493666-85493685 | None:intergenic | 30.0% |
| !! | AGAAGGTATCAATATCCTTA+GGG | + | chr3_1:85493897-85493916 | None:intergenic | 30.0% |
| ACATGACACTTATAATGAGA+CGG | + | chr3_1:85494125-85494144 | None:intergenic | 30.0% | |
| TTGAGAAGTTCACGATAAAT+AGG | + | chr3_1:85494424-85494443 | None:intergenic | 30.0% | |
| AAGAGTAATTGAGATTAAGG+TGG | + | chr3_1:85493388-85493407 | None:intergenic | 30.0% | |
| GAGAAGAGTAATTGAGATTA+AGG | + | chr3_1:85493391-85493410 | None:intergenic | 30.0% | |
| TTTACTTACCTCACTTAGTT+TGG | + | chr3_1:85493490-85493509 | None:intergenic | 30.0% | |
| ! | ATTCTCTTCTTTGAAAGTTG+AGG | + | chr3_1:85493666-85493685 | None:intergenic | 30.0% |
| !! | AGAAGGTATCAATATCCTTA+GGG | + | chr3_1:85493897-85493916 | None:intergenic | 30.0% |
| ACATGACACTTATAATGAGA+CGG | + | chr3_1:85494125-85494144 | None:intergenic | 30.0% | |
| TTGAGAAGTTCACGATAAAT+AGG | + | chr3_1:85494424-85494443 | None:intergenic | 30.0% | |
| TATTGTACTGTTGGAAACTG+TGG | - | chr3_1:85493826-85493845 | Msa0382740:CDS | 35.0% | |
| !! | GAAGGTATCAATATCCTTAG+GGG | + | chr3_1:85493896-85493915 | None:intergenic | 35.0% |
| !! | GAGAAGGTATCAATATCCTT+AGG | + | chr3_1:85493898-85493917 | None:intergenic | 35.0% |
| TATGGTGATCTCAATAATCG+TGG | + | chr3_1:85493940-85493959 | None:intergenic | 35.0% | |
| CGATTATTGAGATCACCATA+CGG | - | chr3_1:85493940-85493959 | Msa0382740:intron | 35.0% | |
| GAAATGATTGACATGAAACC+TGG | + | chr3_1:85494037-85494056 | None:intergenic | 35.0% | |
| TACCGAGAATTGAAATGTGT+AGG | - | chr3_1:85494313-85494332 | Msa0382740:CDS | 35.0% | |
| GACCTACACATTTCAATTCT+CGG | + | chr3_1:85494318-85494337 | None:intergenic | 35.0% | |
| AGAATTGAAATGTGTAGGTC+TGG | - | chr3_1:85494318-85494337 | Msa0382740:CDS | 35.0% | |
| GAATTGAAATGTGTAGGTCT+GGG | - | chr3_1:85494319-85494338 | Msa0382740:CDS | 35.0% | |
| TTATCGTGAACTTCTCAATC+TGG | - | chr3_1:85494426-85494445 | Msa0382740:CDS | 35.0% | |
| CTCTCTCAATTATCTCTTCT+TGG | + | chr3_1:85494620-85494639 | None:intergenic | 35.0% | |
| CAAGAAGAGATAATTGAGAG+AGG | - | chr3_1:85494618-85494637 | Msa0382740:intron | 35.0% | |
| TATTGTACTGTTGGAAACTG+TGG | - | chr3_1:85493826-85493845 | Msa0382740:CDS | 35.0% | |
| !! | GAAGGTATCAATATCCTTAG+GGG | + | chr3_1:85493896-85493915 | None:intergenic | 35.0% |
| !! | GAGAAGGTATCAATATCCTT+AGG | + | chr3_1:85493898-85493917 | None:intergenic | 35.0% |
| TATGGTGATCTCAATAATCG+TGG | + | chr3_1:85493940-85493959 | None:intergenic | 35.0% | |
| CGATTATTGAGATCACCATA+CGG | - | chr3_1:85493940-85493959 | Msa0382740:intron | 35.0% | |
| GAAATGATTGACATGAAACC+TGG | + | chr3_1:85494037-85494056 | None:intergenic | 35.0% | |
| TACCGAGAATTGAAATGTGT+AGG | - | chr3_1:85494313-85494332 | Msa0382740:CDS | 35.0% | |
| GACCTACACATTTCAATTCT+CGG | + | chr3_1:85494318-85494337 | None:intergenic | 35.0% | |
| AGAATTGAAATGTGTAGGTC+TGG | - | chr3_1:85494318-85494337 | Msa0382740:CDS | 35.0% | |
| GAATTGAAATGTGTAGGTCT+GGG | - | chr3_1:85494319-85494338 | Msa0382740:CDS | 35.0% | |
| TTATCGTGAACTTCTCAATC+TGG | - | chr3_1:85494426-85494445 | Msa0382740:CDS | 35.0% | |
| CTCTCTCAATTATCTCTTCT+TGG | + | chr3_1:85494620-85494639 | None:intergenic | 35.0% | |
| CAAGAAGAGATAATTGAGAG+AGG | - | chr3_1:85494618-85494637 | Msa0382740:intron | 35.0% | |
| ! | CTTAGTTTGGAAGGTAGTGA+TGG | + | chr3_1:85493477-85493496 | None:intergenic | 40.0% |
| ACTACCTTCCAAACTAAGTG+AGG | - | chr3_1:85493479-85493498 | Msa0382740:three_prime_UTR | 40.0% | |
| ! | CTTACCTCACTTAGTTTGGA+AGG | + | chr3_1:85493486-85493505 | None:intergenic | 40.0% |
| ! | CTCTTCTTTGAAAGTTGAGG+TGG | + | chr3_1:85493663-85493682 | None:intergenic | 40.0% |
| ! | GAGTCAAGAATGATTTCTGG+CGG | - | chr3_1:85493703-85493722 | Msa0382740:intron | 40.0% |
| AAAGGAGCCACCAAAATCAA+CGG | + | chr3_1:85493737-85493756 | None:intergenic | 40.0% | |
| ! | TTGAGATCACCATACGGTTT+TGG | - | chr3_1:85493946-85493965 | Msa0382740:intron | 40.0% |
| CAAATTAGGACGAAGTAGCA+AGG | + | chr3_1:85494070-85494089 | None:intergenic | 40.0% | |
| ! | CTTGCTACTTCGTCCTAATT+TGG | - | chr3_1:85494068-85494087 | Msa0382740:intron | 40.0% |
| CAATTCTCGGTAATGTCAGT+AGG | + | chr3_1:85494305-85494324 | None:intergenic | 40.0% | |
| GCATAACTTCGCCAATAGAA+TGG | - | chr3_1:85494350-85494369 | Msa0382740:CDS | 40.0% | |
| TCGGTAGCATTCCATTCTAT+TGG | + | chr3_1:85494364-85494383 | None:intergenic | 40.0% | |
| TTTCTTGTATCCAGCTAGCT+AGG | - | chr3_1:85494712-85494731 | Msa0382740:intron | 40.0% | |
| CTAGCTAGGAATCTTTAGGT+TGG | - | chr3_1:85494726-85494745 | Msa0382740:intron | 40.0% | |
| ! | CTTAGTTTGGAAGGTAGTGA+TGG | + | chr3_1:85493477-85493496 | None:intergenic | 40.0% |
| ACTACCTTCCAAACTAAGTG+AGG | - | chr3_1:85493479-85493498 | Msa0382740:three_prime_UTR | 40.0% | |
| ! | CTTACCTCACTTAGTTTGGA+AGG | + | chr3_1:85493486-85493505 | None:intergenic | 40.0% |
| ! | CTCTTCTTTGAAAGTTGAGG+TGG | + | chr3_1:85493663-85493682 | None:intergenic | 40.0% |
| ! | GAGTCAAGAATGATTTCTGG+CGG | - | chr3_1:85493703-85493722 | Msa0382740:intron | 40.0% |
| AAAGGAGCCACCAAAATCAA+CGG | + | chr3_1:85493737-85493756 | None:intergenic | 40.0% | |
| ! | TTGAGATCACCATACGGTTT+TGG | - | chr3_1:85493946-85493965 | Msa0382740:intron | 40.0% |
| CAAATTAGGACGAAGTAGCA+AGG | + | chr3_1:85494070-85494089 | None:intergenic | 40.0% | |
| ! | CTTGCTACTTCGTCCTAATT+TGG | - | chr3_1:85494068-85494087 | Msa0382740:intron | 40.0% |
| CAATTCTCGGTAATGTCAGT+AGG | + | chr3_1:85494305-85494324 | None:intergenic | 40.0% | |
| GCATAACTTCGCCAATAGAA+TGG | - | chr3_1:85494350-85494369 | Msa0382740:CDS | 40.0% | |
| TCGGTAGCATTCCATTCTAT+TGG | + | chr3_1:85494364-85494383 | None:intergenic | 40.0% | |
| TTTCTTGTATCCAGCTAGCT+AGG | - | chr3_1:85494712-85494731 | Msa0382740:intron | 40.0% | |
| CTAGCTAGGAATCTTTAGGT+TGG | - | chr3_1:85494726-85494745 | Msa0382740:intron | 40.0% | |
| AGAGAATCTTGCCAACGATG+TGG | - | chr3_1:85493679-85493698 | Msa0382740:intron | 45.0% | |
| GAGAATCTTGCCAACGATGT+GGG | - | chr3_1:85493680-85493699 | Msa0382740:intron | 45.0% | |
| AGAATCTTGCCAACGATGTG+GGG | - | chr3_1:85493681-85493700 | Msa0382740:intron | 45.0% | |
| GGGGAGTCAAGAATGATTTC+TGG | - | chr3_1:85493700-85493719 | Msa0382740:intron | 45.0% | |
| !! | TCAAGAATGATTTCTGGCGG+CGG | - | chr3_1:85493706-85493725 | Msa0382740:intron | 45.0% |
| !! | GATTTTGGTGGCTCCTTTCT+TGG | - | chr3_1:85493739-85493758 | Msa0382740:intron | 45.0% |
| TACAATACCAGTCACCAGGA+CGG | + | chr3_1:85493813-85493832 | None:intergenic | 45.0% | |
| ACAGTACAATACCAGTCACC+AGG | + | chr3_1:85493817-85493836 | None:intergenic | 45.0% | |
| GGTGACTGGTATTGTACTGT+TGG | - | chr3_1:85493817-85493836 | Msa0382740:CDS | 45.0% | |
| CAATAATCGTGGCATGTCTG+AGG | + | chr3_1:85493929-85493948 | None:intergenic | 45.0% | |
| !! | AGATCACCATACGGTTTTGG+AGG | - | chr3_1:85493949-85493968 | Msa0382740:intron | 45.0% |
| ATGGAATGCTACCGATGCAA+CGG | - | chr3_1:85494369-85494388 | Msa0382740:CDS | 45.0% | |
| CTTCCAGTACTAGATTCCCT+TGG | + | chr3_1:85494396-85494415 | None:intergenic | 45.0% | |
| CTCTTCTTGGACATCAAACC+TGG | + | chr3_1:85494607-85494626 | None:intergenic | 45.0% | |
| CCTAAAGATTCCTAGCTAGC+TGG | + | chr3_1:85494725-85494744 | None:intergenic | 45.0% | |
| CCAGCTAGCTAGGAATCTTT+AGG | - | chr3_1:85494722-85494741 | Msa0382740:intron | 45.0% | |
| !! | TGGCGCTGATTAGTGTATCT+CGG | - | chr3_1:85494772-85494791 | Msa0382740:five_prime_UTR | 45.0% |
| AGAGAATCTTGCCAACGATG+TGG | - | chr3_1:85493679-85493698 | Msa0382740:intron | 45.0% | |
| GAGAATCTTGCCAACGATGT+GGG | - | chr3_1:85493680-85493699 | Msa0382740:intron | 45.0% | |
| AGAATCTTGCCAACGATGTG+GGG | - | chr3_1:85493681-85493700 | Msa0382740:intron | 45.0% | |
| GGGGAGTCAAGAATGATTTC+TGG | - | chr3_1:85493700-85493719 | Msa0382740:intron | 45.0% | |
| !! | TCAAGAATGATTTCTGGCGG+CGG | - | chr3_1:85493706-85493725 | Msa0382740:intron | 45.0% |
| !! | GATTTTGGTGGCTCCTTTCT+TGG | - | chr3_1:85493739-85493758 | Msa0382740:intron | 45.0% |
| TACAATACCAGTCACCAGGA+CGG | + | chr3_1:85493813-85493832 | None:intergenic | 45.0% | |
| ACAGTACAATACCAGTCACC+AGG | + | chr3_1:85493817-85493836 | None:intergenic | 45.0% | |
| GGTGACTGGTATTGTACTGT+TGG | - | chr3_1:85493817-85493836 | Msa0382740:CDS | 45.0% | |
| CAATAATCGTGGCATGTCTG+AGG | + | chr3_1:85493929-85493948 | None:intergenic | 45.0% | |
| !! | AGATCACCATACGGTTTTGG+AGG | - | chr3_1:85493949-85493968 | Msa0382740:intron | 45.0% |
| ATGGAATGCTACCGATGCAA+CGG | - | chr3_1:85494369-85494388 | Msa0382740:CDS | 45.0% | |
| CTTCCAGTACTAGATTCCCT+TGG | + | chr3_1:85494396-85494415 | None:intergenic | 45.0% | |
| CTCTTCTTGGACATCAAACC+TGG | + | chr3_1:85494607-85494626 | None:intergenic | 45.0% | |
| CCTAAAGATTCCTAGCTAGC+TGG | + | chr3_1:85494725-85494744 | None:intergenic | 45.0% | |
| CCAGCTAGCTAGGAATCTTT+AGG | - | chr3_1:85494722-85494741 | Msa0382740:intron | 45.0% | |
| !! | TGGCGCTGATTAGTGTATCT+CGG | - | chr3_1:85494772-85494791 | Msa0382740:five_prime_UTR | 45.0% |
| AGCAGAAAGATGAGCAGACC+AGG | - | chr3_1:85493613-85493632 | Msa0382740:three_prime_UTR | 50.0% | |
| AGATGAGCAGACCAGGAGAT+TGG | - | chr3_1:85493620-85493639 | Msa0382740:intron | 50.0% | |
| TTCTTGACTCCCCACATCGT+TGG | + | chr3_1:85493693-85493712 | None:intergenic | 50.0% | |
| ! | TTTGGTGGCTCCTTTCTTGG+TGG | - | chr3_1:85493742-85493761 | Msa0382740:intron | 50.0% |
| AGAGCCTCTTCCACCAAGAA+AGG | + | chr3_1:85493755-85493774 | None:intergenic | 50.0% | |
| ! | TCCCCTTTTCCTTTCACCAC+CGG | - | chr3_1:85493778-85493797 | Msa0382740:intron | 50.0% |
| ! | CACATTTGAAGCAGCTGGAG+CGG | + | chr3_1:85493870-85493889 | None:intergenic | 50.0% |
| CTTCAAATGTGGTGCCCCTA+AGG | - | chr3_1:85493879-85493898 | Msa0382740:CDS | 50.0% | |
| !!! | TCACCATACGGTTTTGGAGG+AGG | - | chr3_1:85493952-85493971 | Msa0382740:intron | 50.0% |
| ATTCCCTTGGACCGTTGCAT+CGG | + | chr3_1:85494383-85494402 | None:intergenic | 50.0% | |
| GGTCCAAGGGAATCTAGTAC+TGG | - | chr3_1:85494390-85494409 | Msa0382740:CDS | 50.0% | |
| AGCAGAAAGATGAGCAGACC+AGG | - | chr3_1:85493613-85493632 | Msa0382740:three_prime_UTR | 50.0% | |
| AGATGAGCAGACCAGGAGAT+TGG | - | chr3_1:85493620-85493639 | Msa0382740:intron | 50.0% | |
| TTCTTGACTCCCCACATCGT+TGG | + | chr3_1:85493693-85493712 | None:intergenic | 50.0% | |
| ! | TTTGGTGGCTCCTTTCTTGG+TGG | - | chr3_1:85493742-85493761 | Msa0382740:intron | 50.0% |
| AGAGCCTCTTCCACCAAGAA+AGG | + | chr3_1:85493755-85493774 | None:intergenic | 50.0% | |
| ! | TCCCCTTTTCCTTTCACCAC+CGG | - | chr3_1:85493778-85493797 | Msa0382740:intron | 50.0% |
| ! | CACATTTGAAGCAGCTGGAG+CGG | + | chr3_1:85493870-85493889 | None:intergenic | 50.0% |
| CTTCAAATGTGGTGCCCCTA+AGG | - | chr3_1:85493879-85493898 | Msa0382740:CDS | 50.0% | |
| !!! | TCACCATACGGTTTTGGAGG+AGG | - | chr3_1:85493952-85493971 | Msa0382740:intron | 50.0% |
| ATTCCCTTGGACCGTTGCAT+CGG | + | chr3_1:85494383-85494402 | None:intergenic | 50.0% | |
| GGTCCAAGGGAATCTAGTAC+TGG | - | chr3_1:85494390-85494409 | Msa0382740:CDS | 50.0% | |
| GACCAGGAGATTGGAACTGC+AGG | - | chr3_1:85493629-85493648 | Msa0382740:intron | 55.0% | |
| GTCCTGCAGTTCCAATCTCC+TGG | + | chr3_1:85493634-85493653 | None:intergenic | 55.0% | |
| !! | AGAATGATTTCTGGCGGCGG+CGG | - | chr3_1:85493709-85493728 | Msa0382740:intron | 55.0% |
| GGCTCCTTTCTTGGTGGAAG+AGG | - | chr3_1:85493748-85493767 | Msa0382740:intron | 55.0% | |
| GCCGGTGGTGAAAGGAAAAG+GGG | + | chr3_1:85493782-85493801 | None:intergenic | 55.0% | |
| GGCCGGTGGTGAAAGGAAAA+GGG | + | chr3_1:85493783-85493802 | None:intergenic | 55.0% | |
| AGTCACCAGGACGGACATCA+GGG | + | chr3_1:85493804-85493823 | None:intergenic | 55.0% | |
| CGCTCCAGCTGCTTCAAATG+TGG | - | chr3_1:85493868-85493887 | Msa0382740:CDS | 55.0% | |
| ! | GGCACCACATTTGAAGCAGC+TGG | + | chr3_1:85493875-85493894 | None:intergenic | 55.0% |
| GTCTGAGGAGTCAGAGGAGA+AGG | + | chr3_1:85493914-85493933 | None:intergenic | 55.0% | |
| TGGCATGTCTGAGGAGTCAG+AGG | + | chr3_1:85493920-85493939 | None:intergenic | 55.0% | |
| CTGCCTCCTCCAAAACCGTA+TGG | + | chr3_1:85493958-85493977 | None:intergenic | 55.0% | |
| CCTGGTGCATATCCAGTCAC+CGG | + | chr3_1:85494019-85494038 | None:intergenic | 55.0% | |
| CTACCGATGCAACGGTCCAA+GGG | - | chr3_1:85494377-85494396 | Msa0382740:CDS | 55.0% | |
| GACCAGGAGATTGGAACTGC+AGG | - | chr3_1:85493629-85493648 | Msa0382740:intron | 55.0% | |
| GTCCTGCAGTTCCAATCTCC+TGG | + | chr3_1:85493634-85493653 | None:intergenic | 55.0% | |
| !! | AGAATGATTTCTGGCGGCGG+CGG | - | chr3_1:85493709-85493728 | Msa0382740:intron | 55.0% |
| GGCTCCTTTCTTGGTGGAAG+AGG | - | chr3_1:85493748-85493767 | Msa0382740:intron | 55.0% | |
| GCCGGTGGTGAAAGGAAAAG+GGG | + | chr3_1:85493782-85493801 | None:intergenic | 55.0% | |
| GGCCGGTGGTGAAAGGAAAA+GGG | + | chr3_1:85493783-85493802 | None:intergenic | 55.0% | |
| AGTCACCAGGACGGACATCA+GGG | + | chr3_1:85493804-85493823 | None:intergenic | 55.0% | |
| CGCTCCAGCTGCTTCAAATG+TGG | - | chr3_1:85493868-85493887 | Msa0382740:CDS | 55.0% | |
| ! | GGCACCACATTTGAAGCAGC+TGG | + | chr3_1:85493875-85493894 | None:intergenic | 55.0% |
| GTCTGAGGAGTCAGAGGAGA+AGG | + | chr3_1:85493914-85493933 | None:intergenic | 55.0% | |
| TGGCATGTCTGAGGAGTCAG+AGG | + | chr3_1:85493920-85493939 | None:intergenic | 55.0% | |
| CTGCCTCCTCCAAAACCGTA+TGG | + | chr3_1:85493958-85493977 | None:intergenic | 55.0% | |
| CCTGGTGCATATCCAGTCAC+CGG | + | chr3_1:85494019-85494038 | None:intergenic | 55.0% | |
| CTACCGATGCAACGGTCCAA+GGG | - | chr3_1:85494377-85494396 | Msa0382740:CDS | 55.0% | |
| GGGCCGGTGGTGAAAGGAAA+AGG | + | chr3_1:85493784-85493803 | None:intergenic | 60.0% | |
| ACATCAGGGCCGGTGGTGAA+AGG | + | chr3_1:85493790-85493809 | None:intergenic | 60.0% | |
| CAGTCACCAGGACGGACATC+AGG | + | chr3_1:85493805-85493824 | None:intergenic | 60.0% | |
| CTGATGTCCGTCCTGGTGAC+TGG | - | chr3_1:85493803-85493822 | Msa0382740:exon | 60.0% | |
| ! | TTTGAAGCAGCTGGAGCGGC+TGG | + | chr3_1:85493866-85493885 | None:intergenic | 60.0% |
| AGTCACCGGATTTCCAGCCG+GGG | + | chr3_1:85494005-85494024 | None:intergenic | 60.0% | |
| CAGTCACCGGATTTCCAGCC+GGG | + | chr3_1:85494006-85494025 | None:intergenic | 60.0% | |
| CCAGTCACCGGATTTCCAGC+CGG | + | chr3_1:85494007-85494026 | None:intergenic | 60.0% | |
| CCGGTGACTGGATATGCACC+AGG | - | chr3_1:85494016-85494035 | Msa0382740:intron | 60.0% | |
| GCTACCGATGCAACGGTCCA+AGG | - | chr3_1:85494376-85494395 | Msa0382740:CDS | 60.0% | |
| GGGCCGGTGGTGAAAGGAAA+AGG | + | chr3_1:85493784-85493803 | None:intergenic | 60.0% | |
| ACATCAGGGCCGGTGGTGAA+AGG | + | chr3_1:85493790-85493809 | None:intergenic | 60.0% | |
| CAGTCACCAGGACGGACATC+AGG | + | chr3_1:85493805-85493824 | None:intergenic | 60.0% | |
| CTGATGTCCGTCCTGGTGAC+TGG | - | chr3_1:85493803-85493822 | Msa0382740:exon | 60.0% | |
| ! | TTTGAAGCAGCTGGAGCGGC+TGG | + | chr3_1:85493866-85493885 | None:intergenic | 60.0% |
| AGTCACCGGATTTCCAGCCG+GGG | + | chr3_1:85494005-85494024 | None:intergenic | 60.0% | |
| CAGTCACCGGATTTCCAGCC+GGG | + | chr3_1:85494006-85494025 | None:intergenic | 60.0% | |
| CCAGTCACCGGATTTCCAGC+CGG | + | chr3_1:85494007-85494026 | None:intergenic | 60.0% | |
| CCGGTGACTGGATATGCACC+AGG | - | chr3_1:85494016-85494035 | Msa0382740:intron | 60.0% | |
| GCTACCGATGCAACGGTCCA+AGG | - | chr3_1:85494376-85494395 | Msa0382740:CDS | 60.0% | |
| !!! | GGCGGCGCCGTTGATTTTGG+TGG | - | chr3_1:85493727-85493746 | Msa0382740:intron | 65.0% |
| ACCAGGACGGACATCAGGGC+CGG | + | chr3_1:85493800-85493819 | None:intergenic | 65.0% | |
| !!! | GGTTTTGGAGGAGGCAGCGC+CGG | - | chr3_1:85493961-85493980 | Msa0382740:intron | 65.0% |
| ACTCGCCCCGGCTGGAAATC+CGG | - | chr3_1:85493997-85494016 | Msa0382740:intron | 65.0% | |
| CCGGCTGGAAATCCGGTGAC+TGG | - | chr3_1:85494004-85494023 | Msa0382740:intron | 65.0% | |
| !!! | GGCGGCGCCGTTGATTTTGG+TGG | - | chr3_1:85493727-85493746 | Msa0382740:intron | 65.0% |
| ACCAGGACGGACATCAGGGC+CGG | + | chr3_1:85493800-85493819 | None:intergenic | 65.0% | |
| !!! | GGTTTTGGAGGAGGCAGCGC+CGG | - | chr3_1:85493961-85493980 | Msa0382740:intron | 65.0% |
| ACTCGCCCCGGCTGGAAATC+CGG | - | chr3_1:85493997-85494016 | Msa0382740:intron | 65.0% | |
| CCGGCTGGAAATCCGGTGAC+TGG | - | chr3_1:85494004-85494023 | Msa0382740:intron | 65.0% | |
| !!! | GGCGGCGGCGCCGTTGATTT+TGG | - | chr3_1:85493724-85493743 | Msa0382740:intron | 70.0% |
| AGGACGGACATCAGGGCCGG+TGG | + | chr3_1:85493797-85493816 | None:intergenic | 70.0% | |
| ACCGGCCCTGATGTCCGTCC+TGG | - | chr3_1:85493796-85493815 | Msa0382740:exon | 70.0% | |
| ! | TTTGGAGGAGGCAGCGCCGG+TGG | - | chr3_1:85493964-85493983 | Msa0382740:intron | 70.0% |
| !! | GCGAGTGGAGGCACCACCAC+CGG | + | chr3_1:85493983-85494002 | None:intergenic | 70.0% |
| TTTCCAGCCGGGGCGAGTGG+AGG | + | chr3_1:85493995-85494014 | None:intergenic | 70.0% | |
| GGATTTCCAGCCGGGGCGAG+TGG | + | chr3_1:85493998-85494017 | None:intergenic | 70.0% | |
| !!! | GGCGGCGGCGCCGTTGATTT+TGG | - | chr3_1:85493724-85493743 | Msa0382740:intron | 70.0% |
| AGGACGGACATCAGGGCCGG+TGG | + | chr3_1:85493797-85493816 | None:intergenic | 70.0% | |
| ACCGGCCCTGATGTCCGTCC+TGG | - | chr3_1:85493796-85493815 | Msa0382740:exon | 70.0% | |
| ! | TTTGGAGGAGGCAGCGCCGG+TGG | - | chr3_1:85493964-85493983 | Msa0382740:intron | 70.0% |
| !! | GCGAGTGGAGGCACCACCAC+CGG | + | chr3_1:85493983-85494002 | None:intergenic | 70.0% |
| TTTCCAGCCGGGGCGAGTGG+AGG | + | chr3_1:85493995-85494014 | None:intergenic | 70.0% | |
| GGATTTCCAGCCGGGGCGAG+TGG | + | chr3_1:85493998-85494017 | None:intergenic | 70.0% | |
| GGTGGTGCCTCCACTCGCCC+CGG | - | chr3_1:85493985-85494004 | Msa0382740:intron | 75.0% | |
| GGTGGTGCCTCCACTCGCCC+CGG | - | chr3_1:85493985-85494004 | Msa0382740:intron | 75.0% | |
| !!! | GGAGGAGGCAGCGCCGGTGG+TGG | - | chr3_1:85493967-85493986 | Msa0382740:intron | 80.0% |
| ! | GTGCCTCCACTCGCCCCGGC+TGG | - | chr3_1:85493989-85494008 | Msa0382740:intron | 80.0% |
| !!! | GGAGGAGGCAGCGCCGGTGG+TGG | - | chr3_1:85493967-85493986 | Msa0382740:intron | 80.0% |
| ! | GTGCCTCCACTCGCCCCGGC+TGG | - | chr3_1:85493989-85494008 | Msa0382740:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 85493365 | 85494877 | 85493365 | ID=Msa0382740;Name=Msa0382740 |
| chr3_1 | mRNA | 85493365 | 85494877 | 85493365 | ID=Msa0382740-mRNA-1;Parent=Msa0382740;Name=Msa0382740-mRNA-1;_AED=0.12;_eAED=0.12;_QI=150|1|1|1|0.33|0.25|4|283|171 |
| chr3_1 | exon | 85493365 | 85493634 | 85493365 | ID=Msa0382740-mRNA-1:exon:22446;Parent=Msa0382740-mRNA-1 |
| chr3_1 | exon | 85493795 | 85493907 | 85493795 | ID=Msa0382740-mRNA-1:exon:22445;Parent=Msa0382740-mRNA-1 |
| chr3_1 | exon | 85494205 | 85494634 | 85494205 | ID=Msa0382740-mRNA-1:exon:22444;Parent=Msa0382740-mRNA-1 |
| chr3_1 | exon | 85494742 | 85494877 | 85494742 | ID=Msa0382740-mRNA-1:exon:22443;Parent=Msa0382740-mRNA-1 |
| chr3_1 | five_prime_UTR | 85494742 | 85494877 | 85494742 | ID=Msa0382740-mRNA-1:five_prime_utr;Parent=Msa0382740-mRNA-1 |
| chr3_1 | five_prime_UTR | 85494621 | 85494634 | 85494621 | ID=Msa0382740-mRNA-1:five_prime_utr;Parent=Msa0382740-mRNA-1 |
| chr3_1 | CDS | 85494205 | 85494620 | 85494205 | ID=Msa0382740-mRNA-1:cds;Parent=Msa0382740-mRNA-1 |
| chr3_1 | CDS | 85493808 | 85493907 | 85493808 | ID=Msa0382740-mRNA-1:cds;Parent=Msa0382740-mRNA-1 |
| chr3_1 | three_prime_UTR | 85493795 | 85493807 | 85493795 | ID=Msa0382740-mRNA-1:three_prime_utr;Parent=Msa0382740-mRNA-1 |
| chr3_1 | three_prime_UTR | 85493365 | 85493634 | 85493365 | ID=Msa0382740-mRNA-1:three_prime_utr;Parent=Msa0382740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
