AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342810 MtrunA17_Chr4g0037331 96.552 348 8 1 1 348 1 344 0.0 664
Msa1342810 MtrunA17_Chr5g0405611 67.917 240 72 2 11 248 80 316 1.79e-117 345
Msa1342810 MtrunA17_Chr8g0371771 62.963 270 94 3 14 280 18 284 1.62e-114 334
Msa1342810 MtrunA17_Chr1g0156711 61.977 263 88 6 8 258 3 265 1.09e-104 310
Msa1342810 MtrunA17_Chr3g0142781 53.398 309 125 9 1 296 1 303 1.31e-99 297
Msa1342810 MtrunA17_Chr8g0352471 52.703 296 125 6 9 289 9 304 2.82e-97 291
Msa1342810 MtrunA17_Chr8g0371781 60.996 241 82 4 20 249 23 262 2.28e-95 286
Msa1342810 MtrunA17_Chr5g0405581 54.815 270 110 5 9 266 9 278 1.66e-92 278
Msa1342810 MtrunA17_Chr4g0037351 55.285 246 100 4 3 240 5 248 7.08e-90 272
Msa1342810 MtrunA17_Chr8g0357311 55.777 251 101 6 4 246 7 255 3.01e-89 268
Msa1342810 MtrunA17_Chr6g0482741 52.479 242 108 4 4 240 1 240 4.89e-88 265
Msa1342810 MtrunA17_Chr5g0428801 53.815 249 100 5 4 242 9 252 1.61e-84 258
Msa1342810 MtrunA17_Chr3g0141341 53.165 237 103 5 14 244 1 235 1.83e-84 255
Msa1342810 MtrunA17_Chr8g0351851 53.333 240 105 4 4 239 1 237 1.83e-84 255
Msa1342810 MtrunA17_Chr1g0154591 54.661 236 99 4 15 244 3 236 7.61e-84 254
Msa1342810 MtrunA17_Chr8g0392961 50.612 245 114 4 3 242 5 247 9.92e-83 251
Msa1342810 MtrunA17_Chr7g0265011 49.597 248 118 5 1 242 43 289 4.05e-81 249
Msa1342810 MtrunA17_Chr1g0180121 53.252 246 102 7 4 240 1 242 1.15e-79 243
Msa1342810 MtrunA17_Chr1g0180161 52.419 248 105 7 4 242 1 244 3.12e-79 243
Msa1342810 MtrunA17_Chr1g0180221 52.846 246 107 7 4 242 41 284 5.88e-77 238
Msa1342810 MtrunA17_Chr1g0180231 52.016 248 106 7 4 242 1 244 2.61e-76 234
Msa1342810 MtrunA17_Chr1g0179871 52.016 248 106 7 4 242 1 244 2.61e-76 234
Msa1342810 MtrunA17_Chr2g0312181 50.833 240 108 5 8 240 7 243 5.70e-76 234
Msa1342810 MtrunA17_Chr1g0179851 52.066 242 108 6 7 242 2 241 5.76e-76 234
Msa1342810 MtrunA17_Chr1g0179891 54.185 227 97 5 22 242 14 239 1.21e-75 233
Msa1342810 MtrunA17_Chr5g0424221 48.000 250 119 7 23 269 27 268 3.02e-72 226
Msa1342810 MtrunA17_Chr2g0311561 49.351 231 111 4 21 245 7 237 1.63e-70 221
Msa1342810 MtrunA17_Chr3g0112091 45.570 237 121 5 11 240 2 237 7.23e-70 218
Msa1342810 MtrunA17_Chr2g0311521 50.218 229 106 4 22 242 21 249 1.24e-68 232
Msa1342810 MtrunA17_Chr7g0239131 45.378 238 120 4 8 240 10 242 2.91e-66 209
Msa1342810 MtrunA17_Chr2g0311551 48.889 225 109 4 22 240 20 244 9.27e-66 224
Msa1342810 MtrunA17_Chr6g0452331 43.701 254 129 8 1 241 1 253 1.70e-64 205
Msa1342810 MtrunA17_Chr4g0031221 45.798 238 116 8 13 239 16 251 6.19e-63 201
Msa1342810 MtrunA17_Chr5g0397821 46.575 219 97 10 25 240 24 225 7.03e-50 167
Msa1342810 MtrunA17_Chr2g0311531 42.291 227 101 8 21 242 23 224 6.26e-48 162
Msa1342810 MtrunA17_Chr8g0386341 41.453 234 114 10 11 240 34 248 1.02e-46 159
Msa1342810 MtrunA17_Chr5g0406771 48.864 176 79 6 12 179 3 175 1.49e-46 156
Msa1342810 MtrunA17_Chr5g0397831 38.800 250 129 10 1 240 1 236 6.20e-45 154
Msa1342810 MtrunA17_Chr2g0311501 41.622 185 99 5 66 242 1 184 6.44e-42 145
Msa1342810 MtrunA17_Chr2g0309611 30.705 241 148 7 3 229 4 239 4.86e-34 125
Msa1342810 MtrunA17_Chr1g0179911 30.769 247 149 7 6 241 4 239 8.24e-31 117
Msa1342810 MtrunA17_Chr8g0386351 44.304 158 73 8 9 164 48 192 1.38e-26 105
Msa1342810 MtrunA17_Chr1g0180181 53.571 84 34 2 164 242 18 101 2.29e-20 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342810 AT4G38660.1 63.920 352 100 6 5 345 9 344 6.51e-144 411
Msa1342810 AT4G38660.2 64.881 336 92 5 20 345 3 322 6.93e-141 402
Msa1342810 AT4G24180.2 68.651 252 69 4 5 248 10 259 3.49e-121 352
Msa1342810 AT4G24180.1 68.235 255 70 4 5 248 10 264 1.09e-120 350
Msa1342810 AT4G24180.5 68.826 247 67 4 5 243 10 254 4.55e-119 344
Msa1342810 AT4G24180.6 68.000 250 69 4 5 243 10 259 8.02e-119 344
Msa1342810 AT4G24180.4 67.249 229 65 4 5 225 10 236 1.85e-106 315
Msa1342810 AT4G24180.3 66.379 232 67 4 5 225 10 241 2.02e-106 315
Msa1342810 AT1G75800.1 51.911 314 132 7 1 303 1 306 1.89e-97 292
Msa1342810 AT1G20030.2 64.502 231 72 5 21 241 16 246 7.49e-96 288
Msa1342810 AT1G20030.1 65.487 226 68 5 26 241 4 229 5.48e-95 285
Msa1342810 AT4G36010.1 58.468 248 90 5 21 255 19 266 8.42e-93 279
Msa1342810 AT4G36010.2 58.468 248 90 5 21 255 19 266 8.42e-93 279
Msa1342810 AT1G19320.1 56.452 248 97 5 1 239 1 246 2.41e-91 273
Msa1342810 AT1G75030.1 57.200 250 92 8 1 241 1 244 5.14e-89 268
Msa1342810 AT2G17860.1 54.688 256 102 6 1 245 1 253 7.89e-89 267
Msa1342810 AT1G75040.1 56.148 244 98 6 1 240 1 239 3.27e-86 260
Msa1342810 AT1G75050.1 57.025 242 91 7 9 241 7 244 3.78e-86 260
Msa1342810 AT1G18250.1 56.000 225 92 4 23 242 19 241 2.67e-85 258
Msa1342810 AT1G18250.2 56.502 223 90 4 25 242 22 242 3.91e-85 258
Msa1342810 AT1G73620.1 56.000 225 92 4 23 242 40 262 3.60e-84 256
Msa1342810 AT4G38670.3 55.967 243 96 6 9 240 5 247 1.99e-83 254
Msa1342810 AT4G38670.1 55.967 243 96 6 9 240 5 247 1.99e-83 254
Msa1342810 AT4G38670.2 58.929 224 83 5 26 240 8 231 4.77e-83 253
Msa1342810 AT5G24620.1 52.419 248 102 6 25 257 25 271 9.18e-82 255
Msa1342810 AT5G24620.4 52.419 248 102 6 25 257 80 326 1.33e-81 256
Msa1342810 AT5G24620.3 52.419 248 102 6 25 257 101 347 2.19e-81 256
Msa1342810 AT4G36000.2 54.472 246 68 7 101 345 1 203 1.61e-76 234
Msa1342810 AT4G36000.1 54.472 246 68 7 101 345 1 203 1.61e-76 234
Msa1342810 AT1G77700.3 50.424 236 102 7 14 241 45 273 1.22e-73 231
Msa1342810 AT1G77700.2 49.174 242 112 7 4 241 39 273 2.23e-73 230
Msa1342810 AT1G77700.1 50.901 222 99 6 23 241 87 301 6.51e-73 230
Msa1342810 AT5G38280.1 45.736 258 119 6 12 248 7 264 1.86e-72 237
Msa1342810 AT5G38280.2 47.131 244 113 5 21 248 21 264 4.23e-72 236
Msa1342810 AT5G40020.1 43.426 251 132 4 1 242 1 250 6.95e-68 214
Msa1342810 AT2G28790.2 47.755 245 115 8 4 239 33 273 2.42e-65 208
Msa1342810 AT2G28790.1 47.755 245 115 8 4 239 8 248 2.64e-65 207
Msa1342810 AT5G02140.1 45.992 237 121 5 10 240 6 241 3.41e-64 206
Msa1342810 AT5G02140.2 45.992 237 121 5 10 240 6 241 3.79e-64 204
Msa1342810 AT4G18253.1 39.419 241 137 3 9 245 8 243 3.39e-54 178
Msa1342810 AT4G11650.1 43.846 260 122 12 2 257 3 242 1.02e-52 174
Msa1342810 AT1G70250.1 39.764 254 130 8 26 266 146 389 9.41e-52 183
Msa1342810 AT4G18250.1 40.506 237 132 5 23 254 55 287 2.38e-44 162
Msa1342810 AT5G24620.2 51.429 140 55 4 131 257 15 154 5.27e-39 140
Msa1342810 AT2G24810.1 61.039 77 27 1 166 239 116 192 1.07e-25 102

Find 162 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGGTTGGTCCGGCCGGTTC+TGG 0.121811 tig0006056:+28639 Msa1342810:CDS
TCTGCATTTGTTTACTCTTT+TGG 0.167211 tig0006056:+30065 Msa1342810:CDS
GAAATGAAATGAGGGAACTA+TGG 0.253373 tig0006056:-28031 None:intergenic
GTGAAGTGAGTGAGGAGTTT+AGG 0.274623 tig0006056:-28144 None:intergenic
TTTGTTAAATGAAATGTAAA+TGG 0.314121 tig0006056:+30162 Msa1342810:three_prime_UTR
TATTCAGTTCCCGTAAATTC+AGG 0.318296 tig0006056:+29939 Msa1342810:CDS
TGAGGGAACTATGGGGCTAT+TGG 0.330284 tig0006056:-28022 None:intergenic
GTGAACTCAGCTAGGGTTGC+TGG 0.336395 tig0006056:-28764 None:intergenic
CCAGGAGCAGGGACAGTGAT+AGG 0.340612 tig0006056:+29849 Msa1342810:CDS
TGATCCGGACCCTGAATTTA+CGG 0.349274 tig0006056:-29949 None:intergenic
GCTATTGGATGCCCATGACC+TGG 0.352249 tig0006056:-28007 None:intergenic
ACTGTCCCTGCTCCTGGTAT+TGG 0.357647 tig0006056:-29843 None:intergenic
CCCATGATTGTTGAAGGTTC+TGG 0.359030 tig0006056:+28845 Msa1342810:CDS
CGGTTGGTCCGGCCGGTTCT+GGG 0.371851 tig0006056:+28640 Msa1342810:CDS
CCAGAACCGGCCGGACCAAC+CGG 0.372349 tig0006056:-28639 None:intergenic
TGCTCCCTTAACTAGTGCTC+CGG 0.373581 tig0006056:-30441 None:intergenic
GGTATTGGTGTTGAGGTCAT+TGG 0.375177 tig0006056:-29828 None:intergenic
GTTGAGGTCATTGGAGTTGT+TGG 0.375805 tig0006056:-29819 None:intergenic
TCAACTCCGCCGGACATTGC+TGG 0.377638 tig0006056:-28913 None:intergenic
TAAGCGTAGCTATACGATCT+AGG 0.389947 tig0006056:-29070 None:intergenic
TCCGGATCAGCATCTAATTC+AGG 0.394047 tig0006056:+29963 Msa1342810:CDS
CTCCAGCCGGTTGGTCCGGC+CGG 0.396644 tig0006056:+28633 Msa1342810:CDS
TTTAGGAAGGAGAGTGTTGT+TGG 0.400569 tig0006056:-28127 None:intergenic
TACGACGTGAGTCTCGTTGA+TGG 0.402827 tig0006056:+28812 Msa1342810:CDS
GTTGGAACAGGATCTGAAAA+TGG 0.408945 tig0006056:+29882 Msa1342810:CDS
GATCCGGACCCTGAATTTAC+GGG 0.410876 tig0006056:-29948 None:intergenic
CAAGCTCCAGCCGGTTGGTC+CGG 0.411921 tig0006056:+28629 Msa1342810:CDS
GGCCGGTTCTGGGCTCGAAC+CGG 0.412457 tig0006056:+28650 Msa1342810:CDS
AAGAGTGCGTGTGAGGCTTT+TGG 0.417712 tig0006056:+28959 Msa1342810:CDS
AAGGTGGGTGGTTTACAATA+AGG 0.418882 tig0006056:-30258 None:intergenic
AAACCGGTGCTTCCGAGTGT+TGG 0.422655 tig0006056:-28575 None:intergenic
ACAAATGTGCCTACACAGTA+TGG 0.422746 tig0006056:+28525 Msa1342810:CDS
TCAGATCCTGTTCCAACCTC+AGG 0.424740 tig0006056:-29876 None:intergenic
AACCGGTGCTTCCGAGTGTT+GGG 0.429937 tig0006056:-28574 None:intergenic
ACCAGAACCTTCAACAATCA+TGG 0.434467 tig0006056:-28846 None:intergenic
ATGGTTCACCGGCTACTTGT+AGG 0.436214 tig0006056:+29011 Msa1342810:CDS
TCGGGTATGTGTGAGTCCAC+CGG 0.437031 tig0006056:+28872 Msa1342810:CDS
AATCTACCCATGATTGTTGA+AGG 0.439747 tig0006056:+28839 Msa1342810:CDS
GGCTTGTTGCTCACTAAAGC+TGG 0.439918 tig0006056:+30223 Msa1342810:three_prime_UTR
AACCGGTTCGAGCCCAGAAC+CGG 0.440678 tig0006056:-28652 None:intergenic
GTTGAAGGTTCTGGTGGGTC+GGG 0.448370 tig0006056:+28854 Msa1342810:CDS
CCAGCATTTGCGAGAATACC+TGG 0.448703 tig0006056:-28548 None:intergenic
GCTCCCTTAACTAGTGCTCC+GGG 0.450410 tig0006056:-30440 None:intergenic
TTCTTGTGGAAGCTCGAAAC+CGG 0.455126 tig0006056:-28591 None:intergenic
CCTATCACTGTCCCTGCTCC+TGG 0.456736 tig0006056:-29849 None:intergenic
TGAGGTTCAATGATTGTTGA+GGG 0.458010 tig0006056:+30387 Msa1342810:three_prime_UTR
GAGTTCACTCTTGGCACTAT+AGG 0.458610 tig0006056:+28779 Msa1342810:CDS
TGGATCATATTTAGCTGGAT+TGG 0.461151 tig0006056:+30013 Msa1342810:CDS
AACTTCGACGGATCCGGCTC+CGG 0.467634 tig0006056:+28677 Msa1342810:CDS
AACCGGCCGGACCAACCGGC+TGG 0.468762 tig0006056:-28635 None:intergenic
TTGTAGGCCGTCGATTTACT+CGG 0.469663 tig0006056:+29027 Msa1342810:CDS
CGGGTATGTGTGAGTCCACC+GGG 0.470901 tig0006056:+28873 Msa1342810:CDS
TCAGCATCTAATTCAGGATC+AGG 0.473729 tig0006056:+29969 Msa1342810:CDS
GGTTGCTGGTGGTGCAGCTC+CGG 0.475246 tig0006056:-28750 None:intergenic
GGTTGCAACTTCGACGGATC+CGG 0.475598 tig0006056:+28671 Msa1342810:CDS
TTAGGAAGGAGAGTGTTGTT+GGG 0.477017 tig0006056:-28126 None:intergenic
TTGTTAAATGAAATGTAAAT+GGG 0.477170 tig0006056:+30163 Msa1342810:three_prime_UTR
CCACCCACCTTAAGATTCGT+TGG 0.479262 tig0006056:+30270 Msa1342810:three_prime_UTR
GGGACTCCTGAGGTTGGAAC+AGG 0.482015 tig0006056:+29870 Msa1342810:CDS
CCTTGGAGAAGATGGACAAA+AGG 0.482274 tig0006056:-29143 None:intergenic
TGTTGAAGGTTCTGGTGGGT+CGG 0.482817 tig0006056:+28853 Msa1342810:CDS
GCAGATGGATCATATTTAGC+TGG 0.484088 tig0006056:+30008 Msa1342810:CDS
CGCACTTTCCAAGCTCCAGC+CGG 0.485696 tig0006056:+28620 Msa1342810:CDS
GTTCCCGTAAATTCAGGGTC+CGG 0.490170 tig0006056:+29945 Msa1342810:CDS
CGGACCAACCGGCTGGAGCT+TGG 0.491158 tig0006056:-28628 None:intergenic
AAATGAAATGAGGGAACTAT+GGG 0.491443 tig0006056:-28030 None:intergenic
TCCTGAATTAGATGCTGATC+CGG 0.492799 tig0006056:-29964 None:intergenic
CACCCACCTTAAGATTCGTT+GGG 0.495910 tig0006056:+30271 Msa1342810:three_prime_UTR
TAACCTAGTTAGTTGTTGCT+TGG 0.496269 tig0006056:-28257 None:intergenic
TGAGTGGAGTTAGCAAGAAA+AGG 0.498650 tig0006056:-28094 None:intergenic
CATGTTTGAGCCACAGTCTC+CGG 0.501661 tig0006056:-28711 None:intergenic
GGATCTGAACCAGCAATGTC+CGG 0.501693 tig0006056:+28904 Msa1342810:CDS
TAATCCGTCGACCCAGGTCA+TGG 0.502624 tig0006056:+27995 Msa1342810:five_prime_UTR
TGCTCCTGGTATTGGTGTTG+AGG 0.514274 tig0006056:-29835 None:intergenic
ATTCAGTTCCCGTAAATTCA+GGG 0.523849 tig0006056:+29940 Msa1342810:CDS
TTGAGGTTCAATGATTGTTG+AGG 0.524391 tig0006056:+30386 Msa1342810:three_prime_UTR
GTCTCCGGTGAGACATGAAC+CGG 0.525969 tig0006056:-28696 None:intergenic
ACCCTAGCTGAGTTCACTCT+TGG 0.527571 tig0006056:+28770 Msa1342810:CDS
CCAGGTATTCTCGCAAATGC+TGG 0.530746 tig0006056:+28548 Msa1342810:CDS
AGTGAGTGAGGAGTTTAGGA+AGG 0.533192 tig0006056:-28140 None:intergenic
TGTTATTACCTTTGGGAGTG+AGG 0.533466 tig0006056:-28387 None:intergenic
ACGGGTACAGACACACCCAT+TGG 0.533892 tig0006056:+29915 Msa1342810:CDS
ATGGTAGAATGCAACGGTGC+CGG 0.536138 tig0006056:+28731 Msa1342810:CDS
CGGGTACAGACACACCCATT+GGG 0.537883 tig0006056:+29916 Msa1342810:CDS
GGTGAGACATGAACCGGAGC+CGG 0.538750 tig0006056:-28690 None:intergenic
GGATCCGTCGAAGTTGCAAC+CGG 0.540266 tig0006056:-28669 None:intergenic
AAACCAAGCAACAACTAACT+AGG 0.540465 tig0006056:+28254 Msa1342810:five_prime_UTR
GTGATAGGGACTCCTGAGGT+TGG 0.541020 tig0006056:+29864 Msa1342810:CDS
ACGGGAACTGAATACCCAAT+GGG 0.541906 tig0006056:-29930 None:intergenic
AAGCGTAGCTATACGATCTA+GGG 0.544232 tig0006056:-29069 None:intergenic
AGCCCAACACTCGGAAGCAC+CGG 0.545623 tig0006056:+28572 Msa1342810:CDS
CTTTCCAAGCTCCAGCCGGT+TGG 0.546315 tig0006056:+28624 Msa1342810:CDS
CTATTGGATGCCCATGACCT+GGG 0.549052 tig0006056:-28006 None:intergenic
AAAGAGAGTGATATAAGTTG+AGG 0.549260 tig0006056:-28353 None:intergenic
GGAGAAACCATGCTTGCAGA+TGG 0.549482 tig0006056:+29993 Msa1342810:CDS
TGTTGGGATTTGATAATGAG+TGG 0.550208 tig0006056:-28110 None:intergenic
TATTGTTGTAGTGGCGCGTA+TGG 0.551438 tig0006056:+28992 Msa1342810:CDS
TGCCAAGAGTGAACTCAGCT+AGG 0.556861 tig0006056:-28772 None:intergenic
ATGATTGTTGAAGGTTCTGG+TGG 0.557532 tig0006056:+28848 Msa1342810:CDS
ATGCCCATGACCTGGGTCGA+CGG 0.558345 tig0006056:-27999 None:intergenic
TCAACACCAATACCAGGAGC+AGG 0.558407 tig0006056:+29837 Msa1342810:CDS
ATATGATCCATCTGCAAGCA+TGG 0.561786 tig0006056:-30000 None:intergenic
GCCAAGAGTGAACTCAGCTA+GGG 0.562984 tig0006056:-28771 None:intergenic
CGCGTGTAAGAGTGCGTGTG+AGG 0.564237 tig0006056:+28952 Msa1342810:CDS
TATTTAGCTGGATTGGCCAT+GGG 0.568640 tig0006056:+30020 Msa1342810:CDS
TTTCCCAACGAATCTTAAGG+TGG 0.568778 tig0006056:-30274 None:intergenic
AATCCGTCGACCCAGGTCAT+GGG 0.568964 tig0006056:+27996 Msa1342810:five_prime_UTR
CAGGAGCAGGGACAGTGATA+GGG 0.571920 tig0006056:+29850 Msa1342810:CDS
TCTGAAGCTCTCAACTCCGC+CGG 0.574441 tig0006056:-28923 None:intergenic
CGGAGACTGTGGCTCAAACA+TGG 0.576529 tig0006056:+28712 Msa1342810:CDS
CCAACGAATCTTAAGGTGGG+TGG 0.577670 tig0006056:-30270 None:intergenic
ATTGTGTTGTGGAATGGTGG+CGG 0.578350 tig0006056:-28183 None:intergenic
TGTGCCTACACAGTATGGCC+AGG 0.579329 tig0006056:+28530 Msa1342810:CDS
AACATTTCCGAGTAAATCGA+CGG 0.580067 tig0006056:-29034 None:intergenic
CTCCCTTAACTAGTGCTCCG+GGG 0.580383 tig0006056:-30439 None:intergenic
CTGGACAATGAAATGAAATG+AGG 0.581825 tig0006056:-28040 None:intergenic
TAGTGGCGCGTATGGTTCAC+CGG 0.583066 tig0006056:+29000 Msa1342810:CDS
ATGATGATTGTGTTGTGGAA+TGG 0.583728 tig0006056:-28189 None:intergenic
ATGATTGTGTTGTGGAATGG+TGG 0.586117 tig0006056:-28186 None:intergenic
CCAGAACCTTCAACAATCAT+GGG 0.586909 tig0006056:-28845 None:intergenic
AACCTTTAACCAATAAAAGA+CGG 0.587617 tig0006056:-30303 None:intergenic
TGCAGATGAAGTTGTTGTAG+AGG 0.589695 tig0006056:-30048 None:intergenic
ATATTTAGCTGGATTGGCCA+TGG 0.590981 tig0006056:+30019 Msa1342810:CDS
TCATGTCTCACCGGAGACTG+TGG 0.594100 tig0006056:+28701 Msa1342810:CDS
ATTTATTAATCCGTCGACCC+AGG 0.594647 tig0006056:+27989 Msa1342810:five_prime_UTR
TACGGGAACTGAATACCCAA+TGG 0.595273 tig0006056:-29931 None:intergenic
TTCCCAACGAATCTTAAGGT+GGG 0.596443 tig0006056:-30273 None:intergenic
GTTCAGATCCGACGTACACC+CGG 0.602695 tig0006056:-28891 None:intergenic
GCGGAGTTGAGAGCTTCAGA+TGG 0.605619 tig0006056:+28926 Msa1342810:CDS
TGAATATGATGATTGTGTTG+TGG 0.606360 tig0006056:-28194 None:intergenic
TTAGCTGGATTGGCCATGGG+AGG 0.610887 tig0006056:+30023 Msa1342810:CDS
GGTTCGAGCCCAGAACCGGC+CGG 0.616663 tig0006056:-28648 None:intergenic
ATGACCTCAACACCAATACC+AGG 0.616871 tig0006056:+29831 Msa1342810:CDS
TGTTGTAGAGGAGCCTCCCA+TGG 0.618276 tig0006056:-30036 None:intergenic
AGTAGTTTACATTACACACA+TGG 0.620193 tig0006056:+28321 Msa1342810:exon
GGCTCCGGTTCATGTCTCAC+CGG 0.626577 tig0006056:+28692 Msa1342810:CDS
TCCCTTAACTAGTGCTCCGG+GGG 0.628542 tig0006056:-30438 None:intergenic
AGTCCTGAGTATTGTTGTAG+TGG 0.630959 tig0006056:+28983 Msa1342810:CDS
AATGCTGGTAGCCCAACACT+CGG 0.633231 tig0006056:+28563 Msa1342810:CDS
CGAACCGGTTGCAACTTCGA+CGG 0.637688 tig0006056:+28665 Msa1342810:CDS
TGGACAATGAAATGAAATGA+GGG 0.639363 tig0006056:-28039 None:intergenic
GCATCTAATTCAGGATCAGG+AGG 0.640976 tig0006056:+29972 Msa1342810:CDS
TGGAGCTTGGAAAGTGCGAG+TGG 0.641087 tig0006056:-28615 None:intergenic
GAAATGTTAACCAATGCCCC+CGG 0.642225 tig0006056:+30422 Msa1342810:three_prime_UTR
ATCGACGGCCTACAAGTAGC+CGG 0.644323 tig0006056:-29019 None:intergenic
GCGCCACTACAACAATACTC+AGG 0.648242 tig0006056:-28986 None:intergenic
AATACCTGGCCATACTGTGT+AGG 0.651875 tig0006056:-28534 None:intergenic
TCAAACATGGTAGAATGCAA+CGG 0.654931 tig0006056:+28725 Msa1342810:CDS
AGAAGATGGACAAAAGGTAA+CGG 0.655103 tig0006056:-29137 None:intergenic
TGAGTCCACCGGGTGTACGT+CGG 0.658731 tig0006056:+28883 Msa1342810:CDS
AACTCAGCTAGGGTTGCTGG+TGG 0.659719 tig0006056:-28761 None:intergenic
TGATTGTTGAAGGTTCTGGT+GGG 0.661500 tig0006056:+28849 Msa1342810:CDS
CAACACCAATACCAGGAGCA+GGG 0.663691 tig0006056:+29838 Msa1342810:CDS
TGAAAATGGAGTTCAATACA+CGG 0.669710 tig0006056:+29896 Msa1342810:CDS
AAAGTGCGAGTGGTTTCTTG+TGG 0.674516 tig0006056:-28605 None:intergenic
GTGGGTGGTTTACAATAAGG+AGG 0.682001 tig0006056:-30255 None:intergenic
GAAAATGGAGTTCAATACAC+GGG 0.685341 tig0006056:+29897 Msa1342810:CDS
TGTTACAAGTGAAGTGAGTG+AGG 0.689694 tig0006056:-28152 None:intergenic
GACAGTGATAGGGACTCCTG+AGG 0.705413 tig0006056:+29860 Msa1342810:CDS
TCTGAACCAGCAATGTCCGG+CGG 0.706133 tig0006056:+28907 Msa1342810:CDS
AATGAAATGAGGGAACTATG+GGG 0.733493 tig0006056:-28029 None:intergenic
CAGATCCGACGTACACCCGG+TGG 0.761713 tig0006056:-28888 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTAAAACATAGACAA+AGG - tig0006056:28416-28435 None:intergenic 15.0%
!!! ATGTTAAAAGTATGTTAATT+AGG + tig0006056:29196-29215 Msa1342810:intron 15.0%
!!! TGTTAAAAGTATGTTAATTA+GGG + tig0006056:29197-29216 Msa1342810:intron 15.0%
!! ATTAATAGTAGATTTATTGT+TGG + tig0006056:29522-29541 Msa1342810:intron 15.0%
!! TTTGTTAAATGAAATGTAAA+TGG + tig0006056:30162-30181 Msa1342810:three_prime_UTR 15.0%
!! TTGTTAAATGAAATGTAAAT+GGG + tig0006056:30163-30182 Msa1342810:three_prime_UTR 15.0%
!!! TGTTTTATTAGTATTAATCT+TGG + tig0006056:30333-30352 Msa1342810:three_prime_UTR 15.0%
!!! GTTTTATTAGTATTAATCTT+GGG + tig0006056:30334-30353 Msa1342810:three_prime_UTR 15.0%
!!! TTTTTAACATGTTTTTGTTC+AGG + tig0006056:28473-28492 Msa1342810:intron 20.0%
!!! AATTTTGTGATTGTAGAAAT+TGG + tig0006056:29744-29763 Msa1342810:intron 20.0%
!!! AAAATTATTCCGTCTTTTAT+TGG + tig0006056:30294-30313 Msa1342810:three_prime_UTR 20.0%
!!! TTACTTTTTTTGCTTGTCTT+AGG - tig0006056:28294-28313 None:intergenic 25.0%
!!! AGTGTTGATTAATTTTACCT+TGG - tig0006056:29163-29182 None:intergenic 25.0%
! TAACAACATTGTCGTATAAT+GGG - tig0006056:29224-29243 None:intergenic 25.0%
! TTAACAACATTGTCGTATAA+TGG - tig0006056:29225-29244 None:intergenic 25.0%
! GTCAGAAATTATTCTTCAAA+AGG - tig0006056:29318-29337 None:intergenic 25.0%
!!! TTGTTGGCATTTAATTTGTT+AGG + tig0006056:29538-29557 Msa1342810:intron 25.0%
!! TAAATGGGTACTTAGATTTT+CGG + tig0006056:30178-30197 Msa1342810:three_prime_UTR 25.0%
!!! TTTTTTGGGTTTATGGATTT+TGG + tig0006056:30202-30221 Msa1342810:three_prime_UTR 25.0%
! AACCTTTAACCAATAAAAGA+CGG - tig0006056:30306-30325 None:intergenic 25.0%
!! ATTGTTGAGGGTATAAAAAA+AGG + tig0006056:30399-30418 Msa1342810:three_prime_UTR 25.0%
!! TTGTTGAGGGTATAAAAAAA+GGG + tig0006056:30400-30419 Msa1342810:three_prime_UTR 25.0%
AAATGAAATGAGGGAACTAT+GGG - tig0006056:28033-28052 None:intergenic 30.0%
TGGACAATGAAATGAAATGA+GGG - tig0006056:28042-28061 None:intergenic 30.0%
TGAATATGATGATTGTGTTG+TGG - tig0006056:28197-28216 None:intergenic 30.0%
!!! TGGTTTTTTTGAGTGTTGAA+TGG - tig0006056:28240-28259 None:intergenic 30.0%
AGTAGTTTACATTACACACA+TGG + tig0006056:28321-28340 Msa1342810:exon 30.0%
AAAGAGAGTGATATAAGTTG+AGG - tig0006056:28356-28375 None:intergenic 30.0%
! AAGGTTGTGTTATTACCTTT+GGG - tig0006056:28397-28416 None:intergenic 30.0%
! AAAGGTTGTGTTATTACCTT+TGG - tig0006056:28398-28417 None:intergenic 30.0%
!!! GTTAGCGTTTTTTGTTTTGA+AGG - tig0006056:28443-28462 None:intergenic 30.0%
! TAATTTTACCTTGGAGAAGA+TGG - tig0006056:29154-29173 None:intergenic 30.0%
AAAGTCATGTAATGTCATCA+TGG + tig0006056:29389-29408 Msa1342810:intron 30.0%
ATTTCCACTTTCAGATTTGT+AGG + tig0006056:29440-29459 Msa1342810:intron 30.0%
TTTCCACTTTCAGATTTGTA+GGG + tig0006056:29441-29460 Msa1342810:intron 30.0%
TTAAAAACTAAGTTCCCCTT+TGG - tig0006056:29492-29511 None:intergenic 30.0%
!! AAGGGGAACTTAGTTTTTAA+TGG + tig0006056:29492-29511 Msa1342810:intron 30.0%
AACTAGTCATCTTAAGCAAA+CGG + tig0006056:29581-29600 Msa1342810:intron 30.0%
ATCTTAAGCAAACGGTTAAA+TGG + tig0006056:29589-29608 Msa1342810:intron 30.0%
GATTGTAACAACTTGTGATA+TGG + tig0006056:29769-29788 Msa1342810:intron 30.0%
TGAAAATGGAGTTCAATACA+CGG + tig0006056:29896-29915 Msa1342810:CDS 30.0%
! TCTGCATTTGTTTACTCTTT+TGG + tig0006056:30065-30084 Msa1342810:CDS 30.0%
!!! TTTAGTTTTTAGCTAGCTGT+AGG + tig0006056:30111-30130 Msa1342810:exon 30.0%
! AAATGGGTACTTAGATTTTC+GGG + tig0006056:30179-30198 Msa1342810:three_prime_UTR 30.0%
!!! ACTTAGATTTTCGGGTTTTT+TGG + tig0006056:30187-30206 Msa1342810:three_prime_UTR 30.0%
!!! CTTAGATTTTCGGGTTTTTT+GGG + tig0006056:30188-30207 Msa1342810:three_prime_UTR 30.0%
! AATTTTCCCAACGAATCTTA+AGG - tig0006056:30280-30299 None:intergenic 30.0%
!! TTCCGTCTTTTATTGGTTAA+AGG + tig0006056:30301-30320 Msa1342810:three_prime_UTR 30.0%
! TGAACCTCAAAAAGCTTTAT+GGG - tig0006056:30376-30395 None:intergenic 30.0%
TTGAACCTCAAAAAGCTTTA+TGG - tig0006056:30377-30396 None:intergenic 30.0%
AATGAAATGAGGGAACTATG+GGG - tig0006056:28032-28051 None:intergenic 35.0%
GAAATGAAATGAGGGAACTA+TGG - tig0006056:28034-28053 None:intergenic 35.0%
CTGGACAATGAAATGAAATG+AGG - tig0006056:28043-28062 None:intergenic 35.0%
!!! GACAAAAGAGAGTGTTTTGA+GGG - tig0006056:28075-28094 None:intergenic 35.0%
!! TGTTGGGATTTGATAATGAG+TGG - tig0006056:28113-28132 None:intergenic 35.0%
ATGATGATTGTGTTGTGGAA+TGG - tig0006056:28192-28211 None:intergenic 35.0%
AAACCAAGCAACAACTAACT+AGG + tig0006056:28254-28273 Msa1342810:five_prime_UTR 35.0%
TAACCTAGTTAGTTGTTGCT+TGG - tig0006056:28260-28279 None:intergenic 35.0%
!! TGTTTTTGTTCAGGTATCAC+TGG + tig0006056:28482-28501 Msa1342810:intron 35.0%
TCAAACATGGTAGAATGCAA+CGG + tig0006056:28725-28744 Msa1342810:CDS 35.0%
AATCTACCCATGATTGTTGA+AGG + tig0006056:28839-28858 Msa1342810:CDS 35.0%
AACATTTCCGAGTAAATCGA+CGG - tig0006056:29037-29056 None:intergenic 35.0%
! TACTTTTACTTGTACTGCTG+CGG + tig0006056:29108-29127 Msa1342810:CDS 35.0%
AGAAGATGGACAAAAGGTAA+CGG - tig0006056:29140-29159 None:intergenic 35.0%
AAACCCTACAAATCTGAAAG+TGG - tig0006056:29447-29466 None:intergenic 35.0%
GTTTGTTTCCATGTAACCAT+AGG + tig0006056:29463-29482 Msa1342810:intron 35.0%
ATAAAATCCCACTTGCTCAA+AGG + tig0006056:29682-29701 Msa1342810:intron 35.0%
TAAAATCCCACTTGCTCAAA+GGG + tig0006056:29683-29702 Msa1342810:intron 35.0%
GAAAATGGAGTTCAATACAC+GGG + tig0006056:29897-29916 Msa1342810:CDS 35.0%
TATTCAGTTCCCGTAAATTC+AGG + tig0006056:29939-29958 Msa1342810:CDS 35.0%
ATTCAGTTCCCGTAAATTCA+GGG + tig0006056:29940-29959 Msa1342810:CDS 35.0%
TGGATCATATTTAGCTGGAT+TGG + tig0006056:30013-30032 Msa1342810:CDS 35.0%
!!! TTTCGGGTTTTTTGGGTTTA+TGG + tig0006056:30195-30214 Msa1342810:three_prime_UTR 35.0%
! AACCTCAAAAAGCTTTATGG+GGG - tig0006056:30374-30393 None:intergenic 35.0%
! GAACCTCAAAAAGCTTTATG+GGG - tig0006056:30375-30394 None:intergenic 35.0%
TTGAGGTTCAATGATTGTTG+AGG + tig0006056:30386-30405 Msa1342810:three_prime_UTR 35.0%
TGAGGTTCAATGATTGTTGA+GGG + tig0006056:30387-30406 Msa1342810:three_prime_UTR 35.0%
ATTTATTAATCCGTCGACCC+AGG + tig0006056:27989-28008 Msa1342810:five_prime_UTR 40.0%
!!! GGACAAAAGAGAGTGTTTTG+AGG - tig0006056:28076-28095 None:intergenic 40.0%
TGAGTGGAGTTAGCAAGAAA+AGG - tig0006056:28097-28116 None:intergenic 40.0%
!! TTAGGAAGGAGAGTGTTGTT+GGG - tig0006056:28129-28148 None:intergenic 40.0%
!! TTTAGGAAGGAGAGTGTTGT+TGG - tig0006056:28130-28149 None:intergenic 40.0%
TGTTACAAGTGAAGTGAGTG+AGG - tig0006056:28155-28174 None:intergenic 40.0%
ATGATTGTGTTGTGGAATGG+TGG - tig0006056:28189-28208 None:intergenic 40.0%
! TGTTATTACCTTTGGGAGTG+AGG - tig0006056:28390-28409 None:intergenic 40.0%
ACAAATGTGCCTACACAGTA+TGG + tig0006056:28525-28544 Msa1342810:CDS 40.0%
CCAGAACCTTCAACAATCAT+GGG - tig0006056:28848-28867 None:intergenic 40.0%
ACCAGAACCTTCAACAATCA+TGG - tig0006056:28849-28868 None:intergenic 40.0%
! ATGATTGTTGAAGGTTCTGG+TGG + tig0006056:28848-28867 Msa1342810:CDS 40.0%
! TGATTGTTGAAGGTTCTGGT+GGG + tig0006056:28849-28868 Msa1342810:CDS 40.0%
! AGTCCTGAGTATTGTTGTAG+TGG + tig0006056:28983-29002 Msa1342810:CDS 40.0%
AAGCGTAGCTATACGATCTA+GGG - tig0006056:29072-29091 None:intergenic 40.0%
TAAGCGTAGCTATACGATCT+AGG - tig0006056:29073-29092 None:intergenic 40.0%
TTTGGCTACCTATGGTTACA+TGG - tig0006056:29474-29493 None:intergenic 40.0%
ATGTAACCATAGGTAGCCAA+AGG + tig0006056:29473-29492 Msa1342810:intron 40.0%
TGTAACCATAGGTAGCCAAA+GGG + tig0006056:29474-29493 Msa1342810:intron 40.0%
GTTGGAACAGGATCTGAAAA+TGG + tig0006056:29882-29901 Msa1342810:CDS 40.0%
TCCTGAATTAGATGCTGATC+CGG - tig0006056:29967-29986 None:intergenic 40.0%
TCAGCATCTAATTCAGGATC+AGG + tig0006056:29969-29988 Msa1342810:CDS 40.0%
ATATGATCCATCTGCAAGCA+TGG - tig0006056:30003-30022 None:intergenic 40.0%
GCAGATGGATCATATTTAGC+TGG + tig0006056:30008-30027 Msa1342810:CDS 40.0%
!! ATATTTAGCTGGATTGGCCA+TGG + tig0006056:30019-30038 Msa1342810:CDS 40.0%
!! TATTTAGCTGGATTGGCCAT+GGG + tig0006056:30020-30039 Msa1342810:CDS 40.0%
TGCAGATGAAGTTGTTGTAG+AGG - tig0006056:30051-30070 None:intergenic 40.0%
! GCACTGTTTTCGTGGTATTT+TGG + tig0006056:30139-30158 Msa1342810:three_prime_UTR 40.0%
AAGGTGGGTGGTTTACAATA+AGG - tig0006056:30261-30280 None:intergenic 40.0%
TTCCCAACGAATCTTAAGGT+GGG - tig0006056:30276-30295 None:intergenic 40.0%
TTTCCCAACGAATCTTAAGG+TGG - tig0006056:30277-30296 None:intergenic 40.0%
! ACCTCAAAAAGCTTTATGGG+GGG - tig0006056:30373-30392 None:intergenic 40.0%
!!! GTTTTGAGGGTAAAAGCTGC+TGG - tig0006056:28062-28081 None:intergenic 45.0%
AGTGAGTGAGGAGTTTAGGA+AGG - tig0006056:28143-28162 None:intergenic 45.0%
GTGAAGTGAGTGAGGAGTTT+AGG - tig0006056:28147-28166 None:intergenic 45.0%
ATTGTGTTGTGGAATGGTGG+CGG - tig0006056:28186-28205 None:intergenic 45.0%
! CTTCTTTTCCTCACTCCCAA+AGG + tig0006056:28379-28398 Msa1342810:CDS 45.0%
AATACCTGGCCATACTGTGT+AGG - tig0006056:28537-28556 None:intergenic 45.0%
TTCTTGTGGAAGCTCGAAAC+CGG - tig0006056:28594-28613 None:intergenic 45.0%
AAAGTGCGAGTGGTTTCTTG+TGG - tig0006056:28608-28627 None:intergenic 45.0%
GAGTTCACTCTTGGCACTAT+AGG + tig0006056:28779-28798 Msa1342810:CDS 45.0%
CCCATGATTGTTGAAGGTTC+TGG + tig0006056:28845-28864 Msa1342810:CDS 45.0%
TATTGTTGTAGTGGCGCGTA+TGG + tig0006056:28992-29011 Msa1342810:CDS 45.0%
!! TTGTAGGCCGTCGATTTACT+CGG + tig0006056:29027-29046 Msa1342810:CDS 45.0%
CCTTGGAGAAGATGGACAAA+AGG - tig0006056:29146-29165 None:intergenic 45.0%
! CCTTTTGTCCATCTTCTCCA+AGG + tig0006056:29143-29162 Msa1342810:CDS 45.0%
GTAACCATAGGTAGCCAAAG+GGG + tig0006056:29475-29494 Msa1342810:intron 45.0%
ACACTACCCTTTGAGCAAGT+GGG - tig0006056:29692-29711 None:intergenic 45.0%
TACACTACCCTTTGAGCAAG+TGG - tig0006056:29693-29712 None:intergenic 45.0%
GTTGAGGTCATTGGAGTTGT+TGG - tig0006056:29822-29841 None:intergenic 45.0%
!! GGTATTGGTGTTGAGGTCAT+TGG - tig0006056:29831-29850 None:intergenic 45.0%
ATGACCTCAACACCAATACC+AGG + tig0006056:29831-29850 Msa1342810:CDS 45.0%
ACGGGAACTGAATACCCAAT+GGG - tig0006056:29933-29952 None:intergenic 45.0%
TACGGGAACTGAATACCCAA+TGG - tig0006056:29934-29953 None:intergenic 45.0%
TGATCCGGACCCTGAATTTA+CGG - tig0006056:29952-29971 None:intergenic 45.0%
TCCGGATCAGCATCTAATTC+AGG + tig0006056:29963-29982 Msa1342810:CDS 45.0%
GCATCTAATTCAGGATCAGG+AGG + tig0006056:29972-29991 Msa1342810:CDS 45.0%
GTGGGTGGTTTACAATAAGG+AGG - tig0006056:30258-30277 None:intergenic 45.0%
CACCCACCTTAAGATTCGTT+GGG + tig0006056:30271-30290 Msa1342810:three_prime_UTR 45.0%
! CTCAAAAAGCTTTATGGGGG+GGG - tig0006056:30371-30390 None:intergenic 45.0%
! CCTCAAAAAGCTTTATGGGG+GGG - tig0006056:30372-30391 None:intergenic 45.0%
GAAATGTTAACCAATGCCCC+CGG + tig0006056:30422-30441 Msa1342810:three_prime_UTR 45.0%
CTATTGGATGCCCATGACCT+GGG - tig0006056:28009-28028 None:intergenic 50.0%
TGAGGGAACTATGGGGCTAT+TGG - tig0006056:28025-28044 None:intergenic 50.0%
CCAGCATTTGCGAGAATACC+TGG - tig0006056:28551-28570 None:intergenic 50.0%
CCAGGTATTCTCGCAAATGC+TGG + tig0006056:28548-28567 Msa1342810:CDS 50.0%
AATGCTGGTAGCCCAACACT+CGG + tig0006056:28563-28582 Msa1342810:CDS 50.0%
CATGTTTGAGCCACAGTCTC+CGG - tig0006056:28714-28733 None:intergenic 50.0%
ATGGTAGAATGCAACGGTGC+CGG + tig0006056:28731-28750 Msa1342810:CDS 50.0%
ACCCTAGCTGAGTTCACTCT+TGG + tig0006056:28770-28789 Msa1342810:CDS 50.0%
GCCAAGAGTGAACTCAGCTA+GGG - tig0006056:28774-28793 None:intergenic 50.0%
TGCCAAGAGTGAACTCAGCT+AGG - tig0006056:28775-28794 None:intergenic 50.0%
TACGACGTGAGTCTCGTTGA+TGG + tig0006056:28812-28831 Msa1342810:CDS 50.0%
! TGTTGAAGGTTCTGGTGGGT+CGG + tig0006056:28853-28872 Msa1342810:CDS 50.0%
GGATCTGAACCAGCAATGTC+CGG + tig0006056:28904-28923 Msa1342810:CDS 50.0%
!! AAGAGTGCGTGTGAGGCTTT+TGG + tig0006056:28959-28978 Msa1342810:CDS 50.0%
GCGCCACTACAACAATACTC+AGG - tig0006056:28989-29008 None:intergenic 50.0%
! ATGGTTCACCGGCTACTTGT+AGG + tig0006056:29011-29030 Msa1342810:CDS 50.0%
AGTTCCCCTTTGGCTACCTA+TGG - tig0006056:29482-29501 None:intergenic 50.0%
!! TGCTCCTGGTATTGGTGTTG+AGG - tig0006056:29838-29857 None:intergenic 50.0%
TCAACACCAATACCAGGAGC+AGG + tig0006056:29837-29856 Msa1342810:CDS 50.0%
CAACACCAATACCAGGAGCA+GGG + tig0006056:29838-29857 Msa1342810:CDS 50.0%
TCAGATCCTGTTCCAACCTC+AGG - tig0006056:29879-29898 None:intergenic 50.0%
GTTCCCGTAAATTCAGGGTC+CGG + tig0006056:29945-29964 Msa1342810:CDS 50.0%
GATCCGGACCCTGAATTTAC+GGG - tig0006056:29951-29970 None:intergenic 50.0%
GGAGAAACCATGCTTGCAGA+TGG + tig0006056:29993-30012 Msa1342810:CDS 50.0%
! AGGCTGTAGCACTGTTTTCG+TGG + tig0006056:30131-30150 Msa1342810:three_prime_UTR 50.0%
!! GGCTTGTTGCTCACTAAAGC+TGG + tig0006056:30223-30242 Msa1342810:three_prime_UTR 50.0%
CCAACGAATCTTAAGGTGGG+TGG - tig0006056:30273-30292 None:intergenic 50.0%
CCACCCACCTTAAGATTCGT+TGG + tig0006056:30270-30289 Msa1342810:three_prime_UTR 50.0%
! CCCCCCCATAAAGCTTTTTG+AGG + tig0006056:30369-30388 Msa1342810:three_prime_UTR 50.0%
TGCTCCCTTAACTAGTGCTC+CGG - tig0006056:30444-30463 None:intergenic 50.0%
TAATCCGTCGACCCAGGTCA+TGG + tig0006056:27995-28014 Msa1342810:five_prime_UTR 55.0%
AATCCGTCGACCCAGGTCAT+GGG + tig0006056:27996-28015 Msa1342810:five_prime_UTR 55.0%
GCTATTGGATGCCCATGACC+TGG - tig0006056:28010-28029 None:intergenic 55.0%
TGTGCCTACACAGTATGGCC+AGG + tig0006056:28530-28549 Msa1342810:CDS 55.0%
AACCGGTGCTTCCGAGTGTT+GGG - tig0006056:28577-28596 None:intergenic 55.0%
AAACCGGTGCTTCCGAGTGT+TGG - tig0006056:28578-28597 None:intergenic 55.0%
! TGGAGCTTGGAAAGTGCGAG+TGG - tig0006056:28618-28637 None:intergenic 55.0%
CGAACCGGTTGCAACTTCGA+CGG + tig0006056:28665-28684 Msa1342810:CDS 55.0%
GGATCCGTCGAAGTTGCAAC+CGG - tig0006056:28672-28691 None:intergenic 55.0%
GGTTGCAACTTCGACGGATC+CGG + tig0006056:28671-28690 Msa1342810:CDS 55.0%
GTCTCCGGTGAGACATGAAC+CGG - tig0006056:28699-28718 None:intergenic 55.0%
TCATGTCTCACCGGAGACTG+TGG + tig0006056:28701-28720 Msa1342810:CDS 55.0%
CGGAGACTGTGGCTCAAACA+TGG + tig0006056:28712-28731 Msa1342810:CDS 55.0%
AACTCAGCTAGGGTTGCTGG+TGG - tig0006056:28764-28783 None:intergenic 55.0%
GTGAACTCAGCTAGGGTTGC+TGG - tig0006056:28767-28786 None:intergenic 55.0%
! GTTGAAGGTTCTGGTGGGTC+GGG + tig0006056:28854-28873 Msa1342810:CDS 55.0%
TCGGGTATGTGTGAGTCCAC+CGG + tig0006056:28872-28891 Msa1342810:CDS 55.0%
GTTCAGATCCGACGTACACC+CGG - tig0006056:28894-28913 None:intergenic 55.0%
TCTGAACCAGCAATGTCCGG+CGG + tig0006056:28907-28926 Msa1342810:CDS 55.0%
! TCTGAAGCTCTCAACTCCGC+CGG - tig0006056:28926-28945 None:intergenic 55.0%
GCGGAGTTGAGAGCTTCAGA+TGG + tig0006056:28926-28945 Msa1342810:CDS 55.0%
TAGTGGCGCGTATGGTTCAC+CGG + tig0006056:29000-29019 Msa1342810:CDS 55.0%
ATCGACGGCCTACAAGTAGC+CGG - tig0006056:29022-29041 None:intergenic 55.0%
ACTGTCCCTGCTCCTGGTAT+TGG - tig0006056:29846-29865 None:intergenic 55.0%
CAGGAGCAGGGACAGTGATA+GGG + tig0006056:29850-29869 Msa1342810:CDS 55.0%
GACAGTGATAGGGACTCCTG+AGG + tig0006056:29860-29879 Msa1342810:CDS 55.0%
GTGATAGGGACTCCTGAGGT+TGG + tig0006056:29864-29883 Msa1342810:CDS 55.0%
ACGGGTACAGACACACCCAT+TGG + tig0006056:29915-29934 Msa1342810:CDS 55.0%
CGGGTACAGACACACCCATT+GGG + tig0006056:29916-29935 Msa1342810:CDS 55.0%
!! TTAGCTGGATTGGCCATGGG+AGG + tig0006056:30023-30042 Msa1342810:CDS 55.0%
TGTTGTAGAGGAGCCTCCCA+TGG - tig0006056:30039-30058 None:intergenic 55.0%
TCCCTTAACTAGTGCTCCGG+GGG - tig0006056:30441-30460 None:intergenic 55.0%
CTCCCTTAACTAGTGCTCCG+GGG - tig0006056:30442-30461 None:intergenic 55.0%
GCTCCCTTAACTAGTGCTCC+GGG - tig0006056:30443-30462 None:intergenic 55.0%
ATGCCCATGACCTGGGTCGA+CGG - tig0006056:28002-28021 None:intergenic 60.0%
! AGCCCAACACTCGGAAGCAC+CGG + tig0006056:28572-28591 Msa1342810:CDS 60.0%
CGCACTTTCCAAGCTCCAGC+CGG + tig0006056:28620-28639 Msa1342810:CDS 60.0%
CTTTCCAAGCTCCAGCCGGT+TGG + tig0006056:28624-28643 Msa1342810:CDS 60.0%
!! AACCGGTTCGAGCCCAGAAC+CGG - tig0006056:28655-28674 None:intergenic 60.0%
AACTTCGACGGATCCGGCTC+CGG + tig0006056:28677-28696 Msa1342810:CDS 60.0%
GGTGAGACATGAACCGGAGC+CGG - tig0006056:28693-28712 None:intergenic 60.0%
GGCTCCGGTTCATGTCTCAC+CGG + tig0006056:28692-28711 Msa1342810:CDS 60.0%
CGGGTATGTGTGAGTCCACC+GGG + tig0006056:28873-28892 Msa1342810:CDS 60.0%
TGAGTCCACCGGGTGTACGT+CGG + tig0006056:28883-28902 Msa1342810:CDS 60.0%
TCAACTCCGCCGGACATTGC+TGG - tig0006056:28916-28935 None:intergenic 60.0%
! CGCGTGTAAGAGTGCGTGTG+AGG + tig0006056:28952-28971 Msa1342810:CDS 60.0%
CCTATCACTGTCCCTGCTCC+TGG - tig0006056:29852-29871 None:intergenic 60.0%
CCAGGAGCAGGGACAGTGAT+AGG + tig0006056:29849-29868 Msa1342810:CDS 60.0%
GGGACTCCTGAGGTTGGAAC+AGG + tig0006056:29870-29889 Msa1342810:CDS 60.0%
! AACTAGTGCTCCGGGGGCAT+TGG - tig0006056:30435-30454 None:intergenic 60.0%
! TGCCCCCGGAGCACTAGTTA+AGG + tig0006056:30436-30455 Msa1342810:three_prime_UTR 60.0%
! GCCCCCGGAGCACTAGTTAA+GGG + tig0006056:30437-30456 Msa1342810:three_prime_UTR 60.0%
! CAAGCTCCAGCCGGTTGGTC+CGG + tig0006056:28629-28648 Msa1342810:CDS 65.0%
! GGTTGCTGGTGGTGCAGCTC+CGG - tig0006056:28753-28772 None:intergenic 65.0%
CAGATCCGACGTACACCCGG+TGG - tig0006056:28891-28910 None:intergenic 65.0%
CGGACCAACCGGCTGGAGCT+TGG - tig0006056:28631-28650 None:intergenic 70.0%
CCAGAACCGGCCGGACCAAC+CGG - tig0006056:28642-28661 None:intergenic 70.0%
! CGGTTGGTCCGGCCGGTTCT+GGG + tig0006056:28640-28659 Msa1342810:CDS 70.0%
GGTTCGAGCCCAGAACCGGC+CGG - tig0006056:28651-28670 None:intergenic 70.0%
!! GGCCGGTTCTGGGCTCGAAC+CGG + tig0006056:28650-28669 Msa1342810:CDS 70.0%
! CTCCAGCCGGTTGGTCCGGC+CGG + tig0006056:28633-28652 Msa1342810:CDS 75.0%
AACCGGCCGGACCAACCGGC+TGG - tig0006056:28638-28657 None:intergenic 75.0%
! CCGGTTGGTCCGGCCGGTTC+TGG + tig0006056:28639-28658 Msa1342810:CDS 75.0%
Chromosome Type Strat End Strand Name
tig0006056 gene 27953 30503 27953 ID=Msa1342810;Name=Msa1342810
tig0006056 mRNA 27953 30503 27953 ID=Msa1342810-mRNA-1;Parent=Msa1342810;Name=Msa1342810-mRNA-1;_AED=0.02;_eAED=0.02;_QI=387|1|1|1|1|1|3|388|348
tig0006056 exon 27953 28400 27953 ID=Msa1342810-mRNA-1:exon:3794;Parent=Msa1342810-mRNA-1
tig0006056 exon 28495 29164 28495 ID=Msa1342810-mRNA-1:exon:3795;Parent=Msa1342810-mRNA-1
tig0006056 exon 29800 30503 29800 ID=Msa1342810-mRNA-1:exon:3796;Parent=Msa1342810-mRNA-1
tig0006056 five_prime_UTR 27953 28339 27953 ID=Msa1342810-mRNA-1:five_prime_utr;Parent=Msa1342810-mRNA-1
tig0006056 CDS 28340 28400 28340 ID=Msa1342810-mRNA-1:cds;Parent=Msa1342810-mRNA-1
tig0006056 CDS 28495 29164 28495 ID=Msa1342810-mRNA-1:cds;Parent=Msa1342810-mRNA-1
tig0006056 CDS 29800 30115 29800 ID=Msa1342810-mRNA-1:cds;Parent=Msa1342810-mRNA-1
tig0006056 three_prime_UTR 30116 30503 30116 ID=Msa1342810-mRNA-1:three_prime_utr;Parent=Msa1342810-mRNA-1
Gene Sequence

>Msa1342810

ATGGATCTACTAGCCTCAACTTATATCACTCTCTTTACTCTTCTTTTCCTCACTCCCAAAGGTATCACTGGTTCAACTTTCACATTTGTGAACAAATGTGCCTACACAGTATGGCCAGGTATTCTCGCAAATGCTGGTAGCCCAACACTCGGAAGCACCGGTTTCGAGCTTCCACAAGAAACCACTCGCACTTTCCAAGCTCCAGCCGGTTGGTCCGGCCGGTTCTGGGCTCGAACCGGTTGCAACTTCGACGGATCCGGCTCCGGTTCATGTCTCACCGGAGACTGTGGCTCAAACATGGTAGAATGCAACGGTGCCGGAGCTGCACCACCAGCAACCCTAGCTGAGTTCACTCTTGGCACTATAGGACAAGATTTCTACGACGTGAGTCTCGTTGATGGCTACAATCTACCCATGATTGTTGAAGGTTCTGGTGGGTCGGGTATGTGTGAGTCCACCGGGTGTACGTCGGATCTGAACCAGCAATGTCCGGCGGAGTTGAGAGCTTCAGATGGAAGCGCGTGTAAGAGTGCGTGTGAGGCTTTTGGTAGTCCTGAGTATTGTTGTAGTGGCGCGTATGGTTCACCGGCTACTTGTAGGCCGTCGATTTACTCGGAAATGTTTAAAGCTGCTTGCCCTAGATCGTATAGCTACGCTTACGATGATGCTTCGAGTACTTTTACTTGTACTGCTGCGGATTATACCGTTACCTTTTGTCCATCTTCTCCAAGCAAAAAATCATCACAATATCCAACAACTCCAATGACCTCAACACCAATACCAGGAGCAGGGACAGTGATAGGGACTCCTGAGGTTGGAACAGGATCTGAAAATGGAGTTCAATACACGGGTACAGACACACCCATTGGGTATTCAGTTCCCGTAAATTCAGGGTCCGGATCAGCATCTAATTCAGGATCAGGAGGAGAAACCATGCTTGCAGATGGATCATATTTAGCTGGATTGGCCATGGGAGGCTCCTCTACAACAACTTCATCTGCATTTGTTTACTCTTTTGGTTTTTTTCTTATTTTCTTCTTGCTTTAG

Protein sequence

>Msa1342810

MDLLASTYITLFTLLFLTPKGITGSTFTFVNKCAYTVWPGILANAGSPTLGSTGFELPQETTRTFQAPAGWSGRFWARTGCNFDGSGSGSCLTGDCGSNMVECNGAGAAPPATLAEFTLGTIGQDFYDVSLVDGYNLPMIVEGSGGSGMCESTGCTSDLNQQCPAELRASDGSACKSACEAFGSPEYCCSGAYGSPATCRPSIYSEMFKAACPRSYSYAYDDASSTFTCTAADYTVTFCPSSPSKKSSQYPTTPMTSTPIPGAGTVIGTPEVGTGSENGVQYTGTDTPIGYSVPVNSGSGSASNSGSGGETMLADGSYLAGLAMGGSSTTTSSAFVYSFGFFLIFFLL*