Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525000 | XP_003603428.2 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 2.37e-104 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525000 | G7JB51 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 1.13e-104 | 306 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003080 | Msa0525000 | 0.824220 | 9.083594e-54 | -8.615850e-47 |
| Msa0025580 | Msa0525000 | 0.843887 | 1.062989e-58 | -8.615850e-47 |
| Msa0029960 | Msa0525000 | 0.826473 | 2.660887e-54 | -8.615850e-47 |
| Msa0032970 | Msa0525000 | 0.808598 | 2.863243e-50 | -8.615850e-47 |
| Msa0032980 | Msa0525000 | 0.815421 | 9.327455e-52 | -8.615850e-47 |
| Msa0033780 | Msa0525000 | 0.827494 | 1.516453e-54 | -8.615850e-47 |
| Msa0035380 | Msa0525000 | 0.800171 | 1.633248e-48 | -8.615850e-47 |
| Msa0050660 | Msa0525000 | 0.828203 | 1.024430e-54 | -8.615850e-47 |
| Msa0050700 | Msa0525000 | 0.827073 | 1.913035e-54 | -8.615850e-47 |
| Msa0050790 | Msa0525000 | 0.815599 | 8.512059e-52 | -8.615850e-47 |
| Msa0057540 | Msa0525000 | 0.820306 | 7.354359e-53 | -8.615850e-47 |
| Msa0067060 | Msa0525000 | 0.813105 | 3.028546e-51 | -8.615850e-47 |
| Msa0073120 | Msa0525000 | 0.819836 | 9.420490e-53 | -8.615850e-47 |
| Msa0091350 | Msa0525000 | 0.828656 | 7.962822e-55 | -8.615850e-47 |
| Msa0091360 | Msa0525000 | 0.804424 | 2.174608e-49 | -8.615850e-47 |
| Msa0093860 | Msa0525000 | 0.839073 | 1.970253e-57 | -8.615850e-47 |
| Msa0098410 | Msa0525000 | 0.802347 | 5.856506e-49 | -8.615850e-47 |
| Msa0113340 | Msa0525000 | 0.808499 | 3.005381e-50 | -8.615850e-47 |
| Msa0115550 | Msa0525000 | 0.824731 | 6.885528e-54 | -8.615850e-47 |
| Msa0121330 | Msa0525000 | 0.840387 | 8.965334e-58 | -8.615850e-47 |
| Msa0127340 | Msa0525000 | 0.826156 | 3.166181e-54 | -8.615850e-47 |
| Msa0128570 | Msa0525000 | 0.819079 | 1.401667e-52 | -8.615850e-47 |
| Msa0140130 | Msa0525000 | 0.810916 | 9.086062e-51 | -8.615850e-47 |
| Msa0140380 | Msa0525000 | 0.820376 | 7.085874e-53 | -8.615850e-47 |
| Msa0141640 | Msa0525000 | 0.821621 | 3.663728e-53 | -8.615850e-47 |
| Msa0146650 | Msa0525000 | 0.831253 | 1.853867e-55 | -8.615850e-47 |
| Msa0154620 | Msa0525000 | 0.805058 | 1.603507e-49 | -8.615850e-47 |
| Msa0156050 | Msa0525000 | 0.809095 | 2.240999e-50 | -8.615850e-47 |
| Msa0156090 | Msa0525000 | 0.800710 | 1.268695e-48 | -8.615850e-47 |
| Msa0161930 | Msa0525000 | 0.807002 | 6.252019e-50 | -8.615850e-47 |
| Msa0165830 | Msa0525000 | 0.814604 | 1.415503e-51 | -8.615850e-47 |
| Msa0166170 | Msa0525000 | 0.851295 | 9.740792e-61 | -8.615850e-47 |
| Msa0170070 | Msa0525000 | 0.802180 | 6.340040e-49 | -8.615850e-47 |
| Msa0174650 | Msa0525000 | 0.803087 | 4.120762e-49 | -8.615850e-47 |
| Msa0188610 | Msa0525000 | 0.803043 | 4.208368e-49 | -8.615850e-47 |
| Msa0213610 | Msa0525000 | 0.808793 | 2.600591e-50 | -8.615850e-47 |
| Msa0367520 | Msa0525000 | 0.810908 | 9.122687e-51 | -8.615850e-47 |
| Msa0368860 | Msa0525000 | 0.800195 | 1.614789e-48 | -8.615850e-47 |
| Msa0371190 | Msa0525000 | 0.807139 | 5.847561e-50 | -8.615850e-47 |
| Msa0373170 | Msa0525000 | 0.813265 | 2.793263e-51 | -8.615850e-47 |
| Msa0380540 | Msa0525000 | 0.817764 | 2.784173e-52 | -8.615850e-47 |
| Msa0381730 | Msa0525000 | 0.846965 | 1.559108e-59 | -8.615850e-47 |
| Msa0382740 | Msa0525000 | 0.998979 | 1.786027e-284 | -8.615850e-47 |
| Msa0382770 | Msa0525000 | 0.981823 | 1.547495e-153 | -8.615850e-47 |
| Msa0415140 | Msa0525000 | 0.822447 | 2.357158e-53 | -8.615850e-47 |
| Msa0415450 | Msa0525000 | 0.816710 | 4.805031e-52 | -8.615850e-47 |
| Msa0419450 | Msa0525000 | 0.800836 | 1.195557e-48 | -8.615850e-47 |
| Msa0420670 | Msa0525000 | 0.843325 | 1.501642e-58 | -8.615850e-47 |
| Msa0421750 | Msa0525000 | 0.810144 | 1.333733e-50 | -8.615850e-47 |
| Msa0422050 | Msa0525000 | 0.803380 | 3.582994e-49 | -8.615850e-47 |
| Msa0430080 | Msa0525000 | 0.833762 | 4.427473e-56 | -8.615850e-47 |
| Msa0430170 | Msa0525000 | 0.829640 | 4.596660e-55 | -8.615850e-47 |
| Msa0430480 | Msa0525000 | 0.810545 | 1.092711e-50 | -8.615850e-47 |
| Msa0431200 | Msa0525000 | 0.840507 | 8.340634e-58 | -8.615850e-47 |
| Msa0433150 | Msa0525000 | 0.802934 | 4.432813e-49 | -8.615850e-47 |
| Msa0433760 | Msa0525000 | 0.807498 | 4.908171e-50 | -8.615850e-47 |
| Msa0443410 | Msa0525000 | 0.822928 | 1.821964e-53 | -8.615850e-47 |
| Msa0460070 | Msa0525000 | 0.818993 | 1.466617e-52 | -8.615850e-47 |
| Msa0466520 | Msa0525000 | 0.847251 | 1.301852e-59 | -8.615850e-47 |
| Msa0467690 | Msa0525000 | 0.815083 | 1.108590e-51 | -8.615850e-47 |
| Msa0476280 | Msa0525000 | 0.844580 | 6.923462e-59 | -8.615850e-47 |
| Msa0477630 | Msa0525000 | 0.809671 | 1.686345e-50 | -8.615850e-47 |
| Msa0482080 | Msa0525000 | 0.819043 | 1.428738e-52 | -8.615850e-47 |
| Msa0341680 | Msa0525000 | 0.833595 | 4.872678e-56 | -8.615850e-47 |
| Msa0500450 | Msa0525000 | 0.825444 | 4.671908e-54 | -8.615850e-47 |
| Msa0512530 | Msa0525000 | 0.840495 | 8.403656e-58 | -8.615850e-47 |
| Msa0513080 | Msa0525000 | 0.834134 | 3.573523e-56 | -8.615850e-47 |
| Msa0513560 | Msa0525000 | 0.828933 | 6.823073e-55 | -8.615850e-47 |
| Msa0514020 | Msa0525000 | 0.805397 | 1.361782e-49 | -8.615850e-47 |
| Msa0520260 | Msa0525000 | 0.843320 | 1.506368e-58 | -8.615850e-47 |
| Msa0520870 | Msa0525000 | 0.822462 | 2.338870e-53 | -8.615850e-47 |
| Msa0521320 | Msa0525000 | 0.816111 | 6.544725e-52 | -8.615850e-47 |
| Msa0521680 | Msa0525000 | 0.808415 | 3.132884e-50 | -8.615850e-47 |
| Msa0524320 | Msa0525000 | 0.817067 | 3.996967e-52 | -8.615850e-47 |
| Msa0524430 | Msa0525000 | 0.817234 | 3.664923e-52 | -8.615850e-47 |
| Msa0524520 | Msa0525000 | 0.812389 | 4.345770e-51 | -8.615850e-47 |
| Msa0524800 | Msa0525000 | 0.986619 | 2.128278e-167 | -8.615850e-47 |
| Msa0525000 | Msa0534100 | 0.843125 | 1.698554e-58 | -8.615850e-47 |
| Msa0525000 | Msa0537990 | 0.818557 | 1.842446e-52 | -8.615850e-47 |
| Msa0525000 | Msa0541300 | 0.800461 | 1.426041e-48 | -8.615850e-47 |
| Msa0525000 | Msa0554300 | 0.820286 | 7.431323e-53 | -8.615850e-47 |
| Msa0525000 | Msa0557850 | 0.801535 | 8.600878e-49 | -8.615850e-47 |
| Msa0525000 | Msa0561560 | 0.853870 | 1.795088e-61 | -8.615850e-47 |
| Msa0525000 | Msa0563740 | 0.820405 | 6.979004e-53 | -8.615850e-47 |
| Msa0525000 | Msa0563900 | 0.809524 | 1.813394e-50 | -8.615850e-47 |
| Msa0525000 | Msa0563940 | 0.828930 | 6.837995e-55 | -8.615850e-47 |
| Msa0525000 | Msa0563980 | 0.811955 | 5.402978e-51 | -8.615850e-47 |
| Msa0525000 | Msa0564980 | 0.811244 | 7.714617e-51 | -8.615850e-47 |
| Msa0525000 | Msa0570010 | 0.808336 | 3.256654e-50 | -8.615850e-47 |
| Msa0525000 | Msa0571620 | 0.806095 | 9.714328e-50 | -8.615850e-47 |
| Msa0525000 | Msa0577280 | 0.819900 | 9.108015e-53 | -8.615850e-47 |
| Msa0525000 | Msa0577330 | 0.821504 | 3.898428e-53 | -8.615850e-47 |
| Msa0525000 | Msa0585340 | 0.808102 | 3.651873e-50 | -8.615850e-47 |
| Msa0525000 | Msa0590200 | 0.828745 | 7.576857e-55 | -8.615850e-47 |
| Msa0525000 | Msa0606100 | 0.839198 | 1.829380e-57 | -8.615850e-47 |
| Msa0525000 | Msa0606920 | 0.807783 | 4.269825e-50 | -8.615850e-47 |
| Msa0525000 | Msa0608350 | 0.813516 | 2.460187e-51 | -8.615850e-47 |
| Msa0525000 | Msa0612520 | 0.830972 | 2.172345e-55 | -8.615850e-47 |
| Msa0525000 | Msa0613630 | 0.807789 | 4.257476e-50 | -8.615850e-47 |
| Msa0525000 | Msa0615630 | 0.803060 | 4.174203e-49 | -8.615850e-47 |
| Msa0525000 | Msa0619710 | 0.800099 | 1.689088e-48 | -8.615850e-47 |
| Msa0525000 | Msa0620500 | 0.829454 | 5.101843e-55 | -8.615850e-47 |
| Msa0525000 | Msa0622920 | 0.818877 | 1.558118e-52 | -8.615850e-47 |
| Msa0525000 | Msa0630660 | 0.833441 | 5.323803e-56 | -8.615850e-47 |
| Msa0525000 | Msa0645340 | 0.840751 | 7.200416e-58 | -8.615850e-47 |
| Msa0525000 | Msa0647050 | 0.845969 | 2.915195e-59 | -8.615850e-47 |
| Msa0525000 | Msa0647440 | 0.810327 | 1.217803e-50 | -8.615850e-47 |
| Msa0525000 | Msa0648760 | 0.821033 | 5.007419e-53 | -8.615850e-47 |
| Msa0525000 | Msa0653160 | 0.829613 | 4.666473e-55 | -8.615850e-47 |
| Msa0525000 | Msa0654740 | 0.825914 | 3.615467e-54 | -8.615850e-47 |
| Msa0525000 | Msa0668900 | 0.847342 | 1.229136e-59 | -8.615850e-47 |
| Msa0525000 | Msa0687090 | 0.847560 | 1.070690e-59 | -8.615850e-47 |
| Msa0525000 | Msa0690320 | 0.813305 | 2.737749e-51 | -8.615850e-47 |
| Msa0525000 | Msa0691270 | 0.834168 | 3.503300e-56 | -8.615850e-47 |
| Msa0525000 | Msa0695560 | 0.817559 | 3.096255e-52 | -8.615850e-47 |
| Msa0525000 | Msa0698730 | 0.820380 | 7.072135e-53 | -8.615850e-47 |
| Msa0525000 | Msa0711010 | 0.842847 | 2.013065e-58 | -8.615850e-47 |
| Msa0525000 | Msa0713960 | 0.825286 | 5.092717e-54 | -8.615850e-47 |
| Msa0525000 | Msa0714520 | 0.800641 | 1.310038e-48 | -8.615850e-47 |
| Msa0525000 | Msa0717900 | 0.808041 | 3.762754e-50 | -8.615850e-47 |
| Msa0525000 | Msa0718040 | 0.816545 | 5.232113e-52 | -8.615850e-47 |
| Msa0525000 | Msa0736890 | 0.809119 | 2.214600e-50 | -8.615850e-47 |
| Msa0525000 | Msa0740710 | 0.807170 | 5.761853e-50 | -8.615850e-47 |
| Msa0525000 | Msa0747740 | 0.809546 | 1.793945e-50 | -8.615850e-47 |
| Msa0525000 | Msa0758650 | 0.803619 | 3.197959e-49 | -8.615850e-47 |
| Msa0525000 | Msa0778550 | 0.819722 | 1.000499e-52 | -8.615850e-47 |
| Msa0525000 | Msa0780910 | 0.801701 | 7.952228e-49 | -8.615850e-47 |
| Msa0525000 | Msa0816080 | 0.811756 | 5.971941e-51 | -8.615850e-47 |
| Msa0525000 | Msa0835350 | 0.843883 | 1.065096e-58 | -8.615850e-47 |
| Msa0525000 | Msa0901150 | 0.835898 | 1.283597e-56 | -8.615850e-47 |
| Msa0525000 | Msa0909760 | 0.847318 | 1.247720e-59 | -8.615850e-47 |
| Msa0525000 | Msa0931590 | 0.806010 | 1.012151e-49 | -8.615850e-47 |
| Msa0525000 | Msa0966710 | 0.839049 | 1.999536e-57 | -8.615850e-47 |
| Msa0525000 | Msa1000970 | 0.846341 | 2.308771e-59 | -8.615850e-47 |
| Msa0525000 | Msa1008670 | 0.815576 | 8.612726e-52 | -8.615850e-47 |
| Msa0525000 | Msa1008680 | 0.803172 | 3.957605e-49 | -8.615850e-47 |
| Msa0525000 | Msa1033920 | 0.822859 | 1.890255e-53 | -8.615850e-47 |
| Msa0525000 | Msa1035650 | 0.803422 | 3.512695e-49 | -8.615850e-47 |
| Msa0525000 | Msa1042160 | 0.814507 | 1.487114e-51 | -8.615850e-47 |
| Msa0525000 | Msa1042190 | 0.810650 | 1.037214e-50 | -8.615850e-47 |
| Msa0525000 | Msa1060900 | 0.817321 | 3.503563e-52 | -8.615850e-47 |
| Msa0525000 | Msa1070210 | 0.801987 | 6.947026e-49 | -8.615850e-47 |
| Msa0525000 | Msa1076020 | 0.809946 | 1.471720e-50 | -8.615850e-47 |
| Msa0525000 | Msa1076820 | 0.829206 | 5.858955e-55 | -8.615850e-47 |
| Msa0525000 | Msa1078880 | 0.841575 | 4.372722e-58 | -8.615850e-47 |
| Msa0525000 | Msa1078970 | 0.840789 | 7.037645e-58 | -8.615850e-47 |
| Msa0525000 | Msa1079640 | 0.818503 | 1.894637e-52 | -8.615850e-47 |
| Msa0525000 | Msa1082380 | 0.839055 | 1.991392e-57 | -8.615850e-47 |
| Msa0525000 | Msa1116190 | 0.816175 | 6.331127e-52 | -8.615850e-47 |
| Msa0525000 | Msa1116660 | 0.838874 | 2.218144e-57 | -8.615850e-47 |
| Msa0525000 | Msa1116740 | 0.831632 | 1.495260e-55 | -8.615850e-47 |
| Msa0525000 | Msa1124470 | 0.814132 | 1.799953e-51 | -8.615850e-47 |
| Msa0525000 | Msa1127280 | 0.826120 | 3.228944e-54 | -8.615850e-47 |
| Msa0525000 | Msa1132530 | 0.801718 | 7.889082e-49 | -8.615850e-47 |
| Msa0525000 | Msa1139050 | 0.802212 | 6.245312e-49 | -8.615850e-47 |
| Msa0525000 | Msa1148630 | 0.801119 | 1.046600e-48 | -8.615850e-47 |
| Msa0525000 | Msa1149450 | 0.816976 | 4.188081e-52 | -8.615850e-47 |
| Msa0525000 | Msa1162880 | 0.847117 | 1.416207e-59 | -8.615850e-47 |
| Msa0525000 | Msa1165480 | 0.829754 | 4.312311e-55 | -8.615850e-47 |
| Msa0525000 | Msa1167470 | 0.808983 | 2.368659e-50 | -8.615850e-47 |
| Msa0525000 | Msa1169190 | 0.839564 | 1.469601e-57 | -8.615850e-47 |
| Msa0525000 | Msa1209320 | 0.825436 | 4.693813e-54 | -8.615850e-47 |
| Msa0525000 | Msa1212700 | 0.826333 | 2.873435e-54 | -8.615850e-47 |
| Msa0525000 | Msa1212920 | 0.833545 | 5.015708e-56 | -8.615850e-47 |
| Msa0525000 | Msa1213830 | 0.825251 | 5.191510e-54 | -8.615850e-47 |
| Msa0525000 | Msa1214350 | 0.838847 | 2.254373e-57 | -8.615850e-47 |
| Msa0525000 | Msa1215980 | 0.830747 | 2.467785e-55 | -8.615850e-47 |
| Msa0525000 | Msa1228630 | 0.811871 | 5.637033e-51 | -8.615850e-47 |
| Msa0525000 | Msa1254540 | 0.826420 | 2.739883e-54 | -8.615850e-47 |
| Msa0525000 | Msa1260710 | 0.802779 | 4.770244e-49 | -8.615850e-47 |
| Msa0525000 | Msa1262570 | 0.815910 | 7.255523e-52 | -8.615850e-47 |
| Msa0525000 | Msa1263740 | 0.817588 | 3.051196e-52 | -8.615850e-47 |
| Msa0525000 | Msa1263780 | 0.837974 | 3.786104e-57 | -8.615850e-47 |
| Msa0525000 | Msa1268630 | 0.819357 | 1.211605e-52 | -8.615850e-47 |
| Msa0525000 | Msa1294790 | 0.815973 | 7.026895e-52 | -8.615850e-47 |
| Msa0525000 | Msa1299980 | 0.840327 | 9.296729e-58 | -8.615850e-47 |
| Msa0525000 | Msa1300460 | 0.812221 | 4.728207e-51 | -8.615850e-47 |
| Msa0525000 | Msa1331650 | 0.830272 | 3.224073e-55 | -8.615850e-47 |
| Msa0525000 | Msa1339170 | 0.821653 | 3.601933e-53 | -8.615850e-47 |
| Msa0525000 | Msa1342810 | 0.842974 | 1.862540e-58 | -8.615850e-47 |
| Msa0525000 | Msa1359980 | 0.824408 | 8.205085e-54 | -8.615850e-47 |
| Msa0525000 | Msa1361930 | 0.827611 | 1.422053e-54 | -8.615850e-47 |
| Msa0525000 | Msa1364410 | 0.843577 | 1.286353e-58 | -8.615850e-47 |
| Msa0525000 | Msa1367520 | 0.802619 | 5.147851e-49 | -8.615850e-47 |
| Msa0525000 | Msa1367840 | 0.812705 | 3.705664e-51 | -8.615850e-47 |
| Msa0525000 | Msa1377530 | 0.812863 | 3.421855e-51 | -8.615850e-47 |
| Msa0525000 | Msa1383310 | 0.832983 | 6.924031e-56 | -8.615850e-47 |
| Msa0525000 | Msa1400010 | 0.836154 | 1.105238e-56 | -8.615850e-47 |
| Msa0525000 | Msa1404150 | 0.801369 | 9.302761e-49 | -8.615850e-47 |
| Msa0525000 | Msa1406720 | 0.846359 | 2.281900e-59 | -8.615850e-47 |
| Msa0525000 | Msa1409410 | 0.817374 | 3.409136e-52 | -8.615850e-47 |
| Msa0525000 | Msa1424590 | 0.809570 | 1.772357e-50 | -8.615850e-47 |
| Msa0525000 | Msa1434640 | 0.849443 | 3.223721e-60 | -8.615850e-47 |
| Msa0525000 | Msa1440630 | 0.815091 | 1.103898e-51 | -8.615850e-47 |
| Msa0525000 | Msa1450190 | 0.801392 | 9.201630e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525000 | MtrunA17_Chr3g0138031 | 97.076 | 171 | 4 | 1 | 1 | 171 | 1 | 170 | 2.18e-108 | 306 |
| Msa0525000 | MtrunA17_Chr4g0003701 | 61.111 | 162 | 47 | 4 | 1 | 162 | 1 | 146 | 1.64e-55 | 172 |
| Msa0525000 | MtrunA17_Chr4g0063351 | 43.030 | 165 | 51 | 6 | 5 | 161 | 6 | 135 | 3.60e-33 | 114 |
| Msa0525000 | MtrunA17_Chr2g0306881 | 36.943 | 157 | 58 | 3 | 5 | 160 | 6 | 122 | 6.33e-31 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0525000 | AT3G15680.2 | 60.819 | 171 | 58 | 5 | 1 | 169 | 1 | 164 | 4.49e-61 | 187 |
| Msa0525000 | AT3G15680.1 | 60.819 | 171 | 58 | 5 | 1 | 169 | 1 | 164 | 4.49e-61 | 187 |
| Msa0525000 | AT5G25490.2 | 62.791 | 172 | 50 | 5 | 1 | 164 | 1 | 166 | 1.43e-55 | 173 |
| Msa0525000 | AT5G25490.1 | 62.791 | 172 | 50 | 5 | 1 | 164 | 1 | 166 | 1.43e-55 | 173 |
| Msa0525000 | AT2G26695.1 | 40.764 | 157 | 65 | 5 | 5 | 161 | 6 | 134 | 2.05e-32 | 113 |
| Msa0525000 | AT2G26695.2 | 40.764 | 157 | 65 | 5 | 5 | 161 | 6 | 134 | 2.05e-32 | 113 |
| Msa0525000 | AT2G17975.1 | 30.769 | 169 | 80 | 6 | 3 | 157 | 5 | 150 | 4.69e-16 | 73.9 |
Find 86 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGGCGGCGCCGTTGATTT+TGG | 0.178200 | 3_4:-78538513 | Msa0525000:CDS |
| AGGAGGGACTTGAATAATTT+TGG | 0.217231 | 3_4:-78538886 | None:intergenic |
| CTCTCTCAATTATCTCTTCT+TGG | 0.242787 | 3_4:+78537608 | None:intergenic |
| GAGAAGAGTAATTGAGATTA+AGG | 0.253953 | 3_4:+78538849 | None:intergenic |
| TTGAGATCACCATACGGTTT+TGG | 0.292602 | 3_4:-78538291 | Msa0525000:CDS |
| TTTACTTACCTCACTTAGTT+TGG | 0.293285 | 3_4:+78538750 | None:intergenic |
| CCAGCTAGCTAGGAATCTTT+AGG | 0.320270 | 3_4:-78537503 | Msa0525000:three_prime_UTR |
| GGGGAGTCAAGAATGATTTC+TGG | 0.322815 | 3_4:-78538537 | Msa0525000:CDS |
| TTGAGAAGTTCACGATAAAT+AGG | 0.332528 | 3_4:+78537816 | None:intergenic |
| TCGGTAGCATTCCATTCTAT+TGG | 0.379779 | 3_4:+78537876 | None:intergenic |
| GGCTCCTTTCTTGGTGGAAG+AGG | 0.386495 | 3_4:-78538489 | Msa0525000:CDS |
| GAGAAGGTATCAATATCCTT+AGG | 0.387497 | 3_4:+78538342 | None:intergenic |
| ACTCGCCCCGGCTGGAAATC+CGG | 0.405258 | 3_4:-78538240 | Msa0525000:CDS |
| GTGCCTCCACTCGCCCCGGC+TGG | 0.416254 | 3_4:-78538248 | Msa0525000:CDS |
| TTATCGTGAACTTCTCAATC+TGG | 0.418523 | 3_4:-78537811 | Msa0525000:intron |
| GGGCCGGTGGTGAAAGGAAA+AGG | 0.421977 | 3_4:+78538456 | None:intergenic |
| CAGTCACCAGGACGGACATC+AGG | 0.429559 | 3_4:+78538435 | None:intergenic |
| CTGATGTCCGTCCTGGTGAC+TGG | 0.431260 | 3_4:-78538434 | Msa0525000:CDS |
| AGATGAGCAGACCAGGAGAT+TGG | 0.434758 | 3_4:-78538617 | Msa0525000:CDS |
| GTCCTGCAGTTCCAATCTCC+TGG | 0.444104 | 3_4:+78538606 | None:intergenic |
| CTCTTCTTTGAAAGTTGAGG+TGG | 0.445847 | 3_4:+78538577 | None:intergenic |
| GGCACCACATTTGAAGCAGC+TGG | 0.455963 | 3_4:+78538365 | None:intergenic |
| GGAGGAGGCAGCGCCGGTGG+TGG | 0.457413 | 3_4:-78538270 | Msa0525000:CDS |
| TTTGAAGCAGCTGGAGCGGC+TGG | 0.457465 | 3_4:+78538374 | None:intergenic |
| CGCTCCAGCTGCTTCAAATG+TGG | 0.474359 | 3_4:-78538369 | Msa0525000:CDS |
| CCTAAAGATTCCTAGCTAGC+TGG | 0.477217 | 3_4:+78537503 | None:intergenic |
| TTTCTTGTATCCAGCTAGCT+AGG | 0.477621 | 3_4:-78537513 | Msa0525000:three_prime_UTR |
| CTTCAAATGTGGTGCCCCTA+AGG | 0.478199 | 3_4:-78538358 | Msa0525000:CDS |
| CAGTCACCGGATTTCCAGCC+GGG | 0.479965 | 3_4:+78538234 | None:intergenic |
| CCGGCTGGAAATCCGGTGAC+TGG | 0.485260 | 3_4:-78538233 | Msa0525000:CDS |
| AGAGCCTCTTCCACCAAGAA+AGG | 0.496788 | 3_4:+78538485 | None:intergenic |
| GCATAACTTCGCCAATAGAA+TGG | 0.497407 | 3_4:-78537887 | Msa0525000:CDS |
| CTTCCAGTACTAGATTCCCT+TGG | 0.497781 | 3_4:+78537844 | None:intergenic |
| ATTCTCTTCTTTGAAAGTTG+AGG | 0.498262 | 3_4:+78538574 | None:intergenic |
| TTTGGTGGCTCCTTTCTTGG+TGG | 0.500076 | 3_4:-78538495 | Msa0525000:CDS |
| AGCAGAAAGATGAGCAGACC+AGG | 0.504369 | 3_4:-78538624 | Msa0525000:exon |
| CACATTTGAAGCAGCTGGAG+CGG | 0.504933 | 3_4:+78538370 | None:intergenic |
| GGCCGGTGGTGAAAGGAAAA+GGG | 0.509497 | 3_4:+78538457 | None:intergenic |
| AGAAGGTATCAATATCCTTA+GGG | 0.509984 | 3_4:+78538343 | None:intergenic |
| GACCAGGAGATTGGAACTGC+AGG | 0.511105 | 3_4:-78538608 | Msa0525000:CDS |
| GCTACCGATGCAACGGTCCA+AGG | 0.513927 | 3_4:-78537861 | Msa0525000:CDS |
| GGATTTCCAGCCGGGGCGAG+TGG | 0.514801 | 3_4:+78538242 | None:intergenic |
| AGAATGATTTCTGGCGGCGG+CGG | 0.516918 | 3_4:-78538528 | Msa0525000:CDS |
| GCGAGTGGAGGCACCACCAC+CGG | 0.520780 | 3_4:+78538257 | None:intergenic |
| CTTACCTCACTTAGTTTGGA+AGG | 0.522107 | 3_4:+78538754 | None:intergenic |
| GTCTGAGGAGTCAGAGGAGA+AGG | 0.523791 | 3_4:+78538326 | None:intergenic |
| CCAGTCACCGGATTTCCAGC+CGG | 0.530047 | 3_4:+78538233 | None:intergenic |
| TTCTTGACTCCCCACATCGT+TGG | 0.531867 | 3_4:+78538547 | None:intergenic |
| ACCGGCCCTGATGTCCGTCC+TGG | 0.532481 | 3_4:-78538441 | Msa0525000:CDS |
| GGTCCAAGGGAATCTAGTAC+TGG | 0.534715 | 3_4:-78537847 | Msa0525000:CDS |
| TTTGGAGGAGGCAGCGCCGG+TGG | 0.535377 | 3_4:-78538273 | Msa0525000:CDS |
| GAGAATCTTGCCAACGATGT+GGG | 0.536610 | 3_4:-78538557 | Msa0525000:CDS |
| CTAGCTAGGAATCTTTAGGT+TGG | 0.539572 | 3_4:-78537499 | Msa0525000:three_prime_UTR |
| GGTGACTGGTATTGTACTGT+TGG | 0.542639 | 3_4:-78538420 | Msa0525000:CDS |
| TGGCGCTGATTAGTGTATCT+CGG | 0.545741 | 3_4:-78537453 | Msa0525000:three_prime_UTR |
| ACATCAGGGCCGGTGGTGAA+AGG | 0.548866 | 3_4:+78538450 | None:intergenic |
| ATTCCCTTGGACCGTTGCAT+CGG | 0.549976 | 3_4:+78537857 | None:intergenic |
| TTTCCAGCCGGGGCGAGTGG+AGG | 0.551998 | 3_4:+78538245 | None:intergenic |
| CTTAGTTTGGAAGGTAGTGA+TGG | 0.553592 | 3_4:+78538763 | None:intergenic |
| AAGAGTAATTGAGATTAAGG+TGG | 0.559698 | 3_4:+78538852 | None:intergenic |
| CCGGTGACTGGATATGCACC+AGG | 0.562370 | 3_4:-78538221 | Msa0525000:intron |
| CTGCCTCCTCCAAAACCGTA+TGG | 0.574316 | 3_4:+78538282 | None:intergenic |
| ACCAGGACGGACATCAGGGC+CGG | 0.576233 | 3_4:+78538440 | None:intergenic |
| AAAGGAGCCACCAAAATCAA+CGG | 0.591777 | 3_4:+78538503 | None:intergenic |
| CTACCGATGCAACGGTCCAA+GGG | 0.596798 | 3_4:-78537860 | Msa0525000:CDS |
| GGTGGTGCCTCCACTCGCCC+CGG | 0.597153 | 3_4:-78538252 | Msa0525000:CDS |
| CCTGGTGCATATCCAGTCAC+CGG | 0.599174 | 3_4:+78538221 | None:intergenic |
| AGAGAATCTTGCCAACGATG+TGG | 0.600788 | 3_4:-78538558 | Msa0525000:CDS |
| AGAATCTTGCCAACGATGTG+GGG | 0.604150 | 3_4:-78538556 | Msa0525000:CDS |
| CAATAATCGTGGCATGTCTG+AGG | 0.609735 | 3_4:+78538311 | None:intergenic |
| TGGCATGTCTGAGGAGTCAG+AGG | 0.612841 | 3_4:+78538320 | None:intergenic |
| AGGACGGACATCAGGGCCGG+TGG | 0.617823 | 3_4:+78538443 | None:intergenic |
| TCAAGAATGATTTCTGGCGG+CGG | 0.619694 | 3_4:-78538531 | Msa0525000:CDS |
| ATGGAATGCTACCGATGCAA+CGG | 0.621720 | 3_4:-78537868 | Msa0525000:CDS |
| TATTGTACTGTTGGAAACTG+TGG | 0.623871 | 3_4:-78538411 | Msa0525000:CDS |
| CGATTATTGAGATCACCATA+CGG | 0.625229 | 3_4:-78538297 | Msa0525000:CDS |
| CAAGAAGAGATAATTGAGAG+AGG | 0.626553 | 3_4:-78537607 | Msa0525000:three_prime_UTR |
| AGTCACCAGGACGGACATCA+GGG | 0.629819 | 3_4:+78538436 | None:intergenic |
| GCCGGTGGTGAAAGGAAAAG+GGG | 0.632818 | 3_4:+78538458 | None:intergenic |
| ACTACCTTCCAAACTAAGTG+AGG | 0.639319 | 3_4:-78538758 | Msa0525000:intron |
| ACAGTACAATACCAGTCACC+AGG | 0.642353 | 3_4:+78538423 | None:intergenic |
| GAGTCAAGAATGATTTCTGG+CGG | 0.656995 | 3_4:-78538534 | Msa0525000:CDS |
| TACAATACCAGTCACCAGGA+CGG | 0.657561 | 3_4:+78538427 | None:intergenic |
| TATGGTGATCTCAATAATCG+TGG | 0.671531 | 3_4:+78538300 | None:intergenic |
| GAAGGTATCAATATCCTTAG+GGG | 0.684912 | 3_4:+78538344 | None:intergenic |
| AGTCACCGGATTTCCAGCCG+GGG | 0.690621 | 3_4:+78538235 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATTATAAGTTCCAAATT+AGG | + | chr3_4:78538089-78538108 | None:intergenic | 15.0% |
| !! | ATATACATCTAAAAATGAAT+TGG | + | chr3_4:78538494-78538513 | None:intergenic | 15.0% |
| !! | CTGGAATTAAAAATAAAAAA+AGG | + | chr3_4:78538605-78538624 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATTTTTAATTCC+AGG | - | chr3_4:78538603-78538622 | Msa0525000:CDS | 15.0% |
| !! | TATATTATAAGTTCCAAATT+AGG | + | chr3_4:78538089-78538108 | None:intergenic | 15.0% |
| !! | ATATACATCTAAAAATGAAT+TGG | + | chr3_4:78538494-78538513 | None:intergenic | 15.0% |
| !! | CTGGAATTAAAAATAAAAAA+AGG | + | chr3_4:78538605-78538624 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATTTTTAATTCC+AGG | - | chr3_4:78538603-78538622 | Msa0525000:CDS | 15.0% |
| !! | GATACTTCTTATAAATATTG+TGG | - | chr3_4:78538156-78538175 | Msa0525000:intron | 20.0% |
| !!! | CATTTTTATGAGATTTTGTT+AGG | + | chr3_4:78538187-78538206 | None:intergenic | 20.0% |
| !! | CTAACAAAATCTCATAAAAA+TGG | - | chr3_4:78538185-78538204 | Msa0525000:intron | 20.0% |
| !! | TTTCATTTGTCTCATTATAA+GGG | + | chr3_4:78538285-78538304 | None:intergenic | 20.0% |
| !! | TGCATAAAAAATATCAGAAT+TGG | + | chr3_4:78538517-78538536 | None:intergenic | 20.0% |
| !! | AAAAATAAGTAACTATCTCT+AGG | + | chr3_4:78538672-78538691 | None:intergenic | 20.0% |
| !!! | TAGAGATAGTTACTTATTTT+TGG | - | chr3_4:78538671-78538690 | Msa0525000:intron | 20.0% |
| !!! | GAATATTTTGATTTTGAGTA+TGG | - | chr3_4:78538765-78538784 | Msa0525000:five_prime_UTR | 20.0% |
| !! | GATACTTCTTATAAATATTG+TGG | - | chr3_4:78538156-78538175 | Msa0525000:intron | 20.0% |
| !!! | CATTTTTATGAGATTTTGTT+AGG | + | chr3_4:78538187-78538206 | None:intergenic | 20.0% |
| !! | CTAACAAAATCTCATAAAAA+TGG | - | chr3_4:78538185-78538204 | Msa0525000:intron | 20.0% |
| !! | TTTCATTTGTCTCATTATAA+GGG | + | chr3_4:78538285-78538304 | None:intergenic | 20.0% |
| !! | TGCATAAAAAATATCAGAAT+TGG | + | chr3_4:78538517-78538536 | None:intergenic | 20.0% |
| !! | AAAAATAAGTAACTATCTCT+AGG | + | chr3_4:78538672-78538691 | None:intergenic | 20.0% |
| !!! | TAGAGATAGTTACTTATTTT+TGG | - | chr3_4:78538671-78538690 | Msa0525000:intron | 20.0% |
| !!! | GAATATTTTGATTTTGAGTA+TGG | - | chr3_4:78538765-78538784 | Msa0525000:five_prime_UTR | 20.0% |
| ! | CTTCTTATAAATATTGTGGT+TGG | - | chr3_4:78538160-78538179 | Msa0525000:intron | 25.0% |
| ! | GTTTCATTTGTCTCATTATA+AGG | + | chr3_4:78538286-78538305 | None:intergenic | 25.0% |
| !!! | ATTTTGATTTTGAGTATGGT+TGG | - | chr3_4:78538769-78538788 | Msa0525000:five_prime_UTR | 25.0% |
| !! | GATACTGAAAAAAAGTACAT+GGG | + | chr3_4:78538838-78538857 | None:intergenic | 25.0% |
| !! | TGATACTGAAAAAAAGTACA+TGG | + | chr3_4:78538839-78538858 | None:intergenic | 25.0% |
| ! | CTTCTTATAAATATTGTGGT+TGG | - | chr3_4:78538160-78538179 | Msa0525000:intron | 25.0% |
| ! | GTTTCATTTGTCTCATTATA+AGG | + | chr3_4:78538286-78538305 | None:intergenic | 25.0% |
| !!! | ATTTTGATTTTGAGTATGGT+TGG | - | chr3_4:78538769-78538788 | Msa0525000:five_prime_UTR | 25.0% |
| !! | GATACTGAAAAAAAGTACAT+GGG | + | chr3_4:78538838-78538857 | None:intergenic | 25.0% |
| !! | TGATACTGAAAAAAAGTACA+TGG | + | chr3_4:78538839-78538858 | None:intergenic | 25.0% |
| AAGAGTAATTGAGATTAAGG+TGG | + | chr3_4:78537393-78537412 | None:intergenic | 30.0% | |
| GAGAAGAGTAATTGAGATTA+AGG | + | chr3_4:78537396-78537415 | None:intergenic | 30.0% | |
| TTTACTTACCTCACTTAGTT+TGG | + | chr3_4:78537495-78537514 | None:intergenic | 30.0% | |
| ! | ATTCTCTTCTTTGAAAGTTG+AGG | + | chr3_4:78537671-78537690 | None:intergenic | 30.0% |
| !! | AGAAGGTATCAATATCCTTA+GGG | + | chr3_4:78537902-78537921 | None:intergenic | 30.0% |
| ACATGACACTTATAATGAGA+CGG | + | chr3_4:78538130-78538149 | None:intergenic | 30.0% | |
| TTGAGAAGTTCACGATAAAT+AGG | + | chr3_4:78538429-78538448 | None:intergenic | 30.0% | |
| AAGAGTAATTGAGATTAAGG+TGG | + | chr3_4:78537393-78537412 | None:intergenic | 30.0% | |
| GAGAAGAGTAATTGAGATTA+AGG | + | chr3_4:78537396-78537415 | None:intergenic | 30.0% | |
| TTTACTTACCTCACTTAGTT+TGG | + | chr3_4:78537495-78537514 | None:intergenic | 30.0% | |
| ! | ATTCTCTTCTTTGAAAGTTG+AGG | + | chr3_4:78537671-78537690 | None:intergenic | 30.0% |
| !! | AGAAGGTATCAATATCCTTA+GGG | + | chr3_4:78537902-78537921 | None:intergenic | 30.0% |
| ACATGACACTTATAATGAGA+CGG | + | chr3_4:78538130-78538149 | None:intergenic | 30.0% | |
| TTGAGAAGTTCACGATAAAT+AGG | + | chr3_4:78538429-78538448 | None:intergenic | 30.0% | |
| TATTGTACTGTTGGAAACTG+TGG | - | chr3_4:78537831-78537850 | Msa0525000:CDS | 35.0% | |
| !! | GAAGGTATCAATATCCTTAG+GGG | + | chr3_4:78537901-78537920 | None:intergenic | 35.0% |
| !! | GAGAAGGTATCAATATCCTT+AGG | + | chr3_4:78537903-78537922 | None:intergenic | 35.0% |
| TATGGTGATCTCAATAATCG+TGG | + | chr3_4:78537945-78537964 | None:intergenic | 35.0% | |
| CGATTATTGAGATCACCATA+CGG | - | chr3_4:78537945-78537964 | Msa0525000:intron | 35.0% | |
| GAAATGATTGACATGAAACC+TGG | + | chr3_4:78538042-78538061 | None:intergenic | 35.0% | |
| TACCGAGAATTGAAATGTGT+AGG | - | chr3_4:78538318-78538337 | Msa0525000:CDS | 35.0% | |
| GACCTACACATTTCAATTCT+CGG | + | chr3_4:78538323-78538342 | None:intergenic | 35.0% | |
| AGAATTGAAATGTGTAGGTC+TGG | - | chr3_4:78538323-78538342 | Msa0525000:CDS | 35.0% | |
| GAATTGAAATGTGTAGGTCT+GGG | - | chr3_4:78538324-78538343 | Msa0525000:CDS | 35.0% | |
| TTATCGTGAACTTCTCAATC+TGG | - | chr3_4:78538431-78538450 | Msa0525000:CDS | 35.0% | |
| CTCTCTCAATTATCTCTTCT+TGG | + | chr3_4:78538637-78538656 | None:intergenic | 35.0% | |
| CAAGAAGAGATAATTGAGAG+AGG | - | chr3_4:78538635-78538654 | Msa0525000:intron | 35.0% | |
| TATTGTACTGTTGGAAACTG+TGG | - | chr3_4:78537831-78537850 | Msa0525000:CDS | 35.0% | |
| !! | GAAGGTATCAATATCCTTAG+GGG | + | chr3_4:78537901-78537920 | None:intergenic | 35.0% |
| !! | GAGAAGGTATCAATATCCTT+AGG | + | chr3_4:78537903-78537922 | None:intergenic | 35.0% |
| TATGGTGATCTCAATAATCG+TGG | + | chr3_4:78537945-78537964 | None:intergenic | 35.0% | |
| CGATTATTGAGATCACCATA+CGG | - | chr3_4:78537945-78537964 | Msa0525000:intron | 35.0% | |
| GAAATGATTGACATGAAACC+TGG | + | chr3_4:78538042-78538061 | None:intergenic | 35.0% | |
| TACCGAGAATTGAAATGTGT+AGG | - | chr3_4:78538318-78538337 | Msa0525000:CDS | 35.0% | |
| GACCTACACATTTCAATTCT+CGG | + | chr3_4:78538323-78538342 | None:intergenic | 35.0% | |
| AGAATTGAAATGTGTAGGTC+TGG | - | chr3_4:78538323-78538342 | Msa0525000:CDS | 35.0% | |
| GAATTGAAATGTGTAGGTCT+GGG | - | chr3_4:78538324-78538343 | Msa0525000:CDS | 35.0% | |
| TTATCGTGAACTTCTCAATC+TGG | - | chr3_4:78538431-78538450 | Msa0525000:CDS | 35.0% | |
| CTCTCTCAATTATCTCTTCT+TGG | + | chr3_4:78538637-78538656 | None:intergenic | 35.0% | |
| CAAGAAGAGATAATTGAGAG+AGG | - | chr3_4:78538635-78538654 | Msa0525000:intron | 35.0% | |
| ! | CTTAGTTTGGAAGGTAGTGA+TGG | + | chr3_4:78537482-78537501 | None:intergenic | 40.0% |
| ACTACCTTCCAAACTAAGTG+AGG | - | chr3_4:78537484-78537503 | Msa0525000:three_prime_UTR | 40.0% | |
| ! | CTTACCTCACTTAGTTTGGA+AGG | + | chr3_4:78537491-78537510 | None:intergenic | 40.0% |
| ! | CTCTTCTTTGAAAGTTGAGG+TGG | + | chr3_4:78537668-78537687 | None:intergenic | 40.0% |
| ! | GAGTCAAGAATGATTTCTGG+CGG | - | chr3_4:78537708-78537727 | Msa0525000:intron | 40.0% |
| AAAGGAGCCACCAAAATCAA+CGG | + | chr3_4:78537742-78537761 | None:intergenic | 40.0% | |
| ! | TTGAGATCACCATACGGTTT+TGG | - | chr3_4:78537951-78537970 | Msa0525000:intron | 40.0% |
| CAAATTAGGACGAAGTAGCA+AGG | + | chr3_4:78538075-78538094 | None:intergenic | 40.0% | |
| ! | CTTGCTACTTCGTCCTAATT+TGG | - | chr3_4:78538073-78538092 | Msa0525000:intron | 40.0% |
| CAATTCTCGGTAATGTCAGT+AGG | + | chr3_4:78538310-78538329 | None:intergenic | 40.0% | |
| GCATAACTTCGCCAATAGAA+TGG | - | chr3_4:78538355-78538374 | Msa0525000:CDS | 40.0% | |
| TCGGTAGCATTCCATTCTAT+TGG | + | chr3_4:78538369-78538388 | None:intergenic | 40.0% | |
| TTTCTTGTATCCAGCTAGCT+AGG | - | chr3_4:78538729-78538748 | Msa0525000:intron | 40.0% | |
| CTAGCTAGGAATCTTTAGGT+TGG | - | chr3_4:78538743-78538762 | Msa0525000:intron | 40.0% | |
| ! | CTTAGTTTGGAAGGTAGTGA+TGG | + | chr3_4:78537482-78537501 | None:intergenic | 40.0% |
| ACTACCTTCCAAACTAAGTG+AGG | - | chr3_4:78537484-78537503 | Msa0525000:three_prime_UTR | 40.0% | |
| ! | CTTACCTCACTTAGTTTGGA+AGG | + | chr3_4:78537491-78537510 | None:intergenic | 40.0% |
| ! | CTCTTCTTTGAAAGTTGAGG+TGG | + | chr3_4:78537668-78537687 | None:intergenic | 40.0% |
| ! | GAGTCAAGAATGATTTCTGG+CGG | - | chr3_4:78537708-78537727 | Msa0525000:intron | 40.0% |
| AAAGGAGCCACCAAAATCAA+CGG | + | chr3_4:78537742-78537761 | None:intergenic | 40.0% | |
| ! | TTGAGATCACCATACGGTTT+TGG | - | chr3_4:78537951-78537970 | Msa0525000:intron | 40.0% |
| CAAATTAGGACGAAGTAGCA+AGG | + | chr3_4:78538075-78538094 | None:intergenic | 40.0% | |
| ! | CTTGCTACTTCGTCCTAATT+TGG | - | chr3_4:78538073-78538092 | Msa0525000:intron | 40.0% |
| CAATTCTCGGTAATGTCAGT+AGG | + | chr3_4:78538310-78538329 | None:intergenic | 40.0% | |
| GCATAACTTCGCCAATAGAA+TGG | - | chr3_4:78538355-78538374 | Msa0525000:CDS | 40.0% | |
| TCGGTAGCATTCCATTCTAT+TGG | + | chr3_4:78538369-78538388 | None:intergenic | 40.0% | |
| TTTCTTGTATCCAGCTAGCT+AGG | - | chr3_4:78538729-78538748 | Msa0525000:intron | 40.0% | |
| CTAGCTAGGAATCTTTAGGT+TGG | - | chr3_4:78538743-78538762 | Msa0525000:intron | 40.0% | |
| AGAGAATCTTGCCAACGATG+TGG | - | chr3_4:78537684-78537703 | Msa0525000:intron | 45.0% | |
| GAGAATCTTGCCAACGATGT+GGG | - | chr3_4:78537685-78537704 | Msa0525000:intron | 45.0% | |
| AGAATCTTGCCAACGATGTG+GGG | - | chr3_4:78537686-78537705 | Msa0525000:intron | 45.0% | |
| GGGGAGTCAAGAATGATTTC+TGG | - | chr3_4:78537705-78537724 | Msa0525000:intron | 45.0% | |
| !! | TCAAGAATGATTTCTGGCGG+CGG | - | chr3_4:78537711-78537730 | Msa0525000:intron | 45.0% |
| !! | GATTTTGGTGGCTCCTTTCT+TGG | - | chr3_4:78537744-78537763 | Msa0525000:intron | 45.0% |
| TACAATACCAGTCACCAGGA+CGG | + | chr3_4:78537818-78537837 | None:intergenic | 45.0% | |
| ACAGTACAATACCAGTCACC+AGG | + | chr3_4:78537822-78537841 | None:intergenic | 45.0% | |
| GGTGACTGGTATTGTACTGT+TGG | - | chr3_4:78537822-78537841 | Msa0525000:exon | 45.0% | |
| CAATAATCGTGGCATGTCTG+AGG | + | chr3_4:78537934-78537953 | None:intergenic | 45.0% | |
| !! | AGATCACCATACGGTTTTGG+AGG | - | chr3_4:78537954-78537973 | Msa0525000:intron | 45.0% |
| ATGGAATGCTACCGATGCAA+CGG | - | chr3_4:78538374-78538393 | Msa0525000:CDS | 45.0% | |
| CTTCCAGTACTAGATTCCCT+TGG | + | chr3_4:78538401-78538420 | None:intergenic | 45.0% | |
| CTCTTCTTGGACATCAAACC+TGG | + | chr3_4:78538624-78538643 | None:intergenic | 45.0% | |
| CCTAAAGATTCCTAGCTAGC+TGG | + | chr3_4:78538742-78538761 | None:intergenic | 45.0% | |
| CCAGCTAGCTAGGAATCTTT+AGG | - | chr3_4:78538739-78538758 | Msa0525000:intron | 45.0% | |
| !! | TGGCGCTGATTAGTGTATCT+CGG | - | chr3_4:78538789-78538808 | Msa0525000:five_prime_UTR | 45.0% |
| AGAGAATCTTGCCAACGATG+TGG | - | chr3_4:78537684-78537703 | Msa0525000:intron | 45.0% | |
| GAGAATCTTGCCAACGATGT+GGG | - | chr3_4:78537685-78537704 | Msa0525000:intron | 45.0% | |
| AGAATCTTGCCAACGATGTG+GGG | - | chr3_4:78537686-78537705 | Msa0525000:intron | 45.0% | |
| GGGGAGTCAAGAATGATTTC+TGG | - | chr3_4:78537705-78537724 | Msa0525000:intron | 45.0% | |
| !! | TCAAGAATGATTTCTGGCGG+CGG | - | chr3_4:78537711-78537730 | Msa0525000:intron | 45.0% |
| !! | GATTTTGGTGGCTCCTTTCT+TGG | - | chr3_4:78537744-78537763 | Msa0525000:intron | 45.0% |
| TACAATACCAGTCACCAGGA+CGG | + | chr3_4:78537818-78537837 | None:intergenic | 45.0% | |
| ACAGTACAATACCAGTCACC+AGG | + | chr3_4:78537822-78537841 | None:intergenic | 45.0% | |
| GGTGACTGGTATTGTACTGT+TGG | - | chr3_4:78537822-78537841 | Msa0525000:exon | 45.0% | |
| CAATAATCGTGGCATGTCTG+AGG | + | chr3_4:78537934-78537953 | None:intergenic | 45.0% | |
| !! | AGATCACCATACGGTTTTGG+AGG | - | chr3_4:78537954-78537973 | Msa0525000:intron | 45.0% |
| ATGGAATGCTACCGATGCAA+CGG | - | chr3_4:78538374-78538393 | Msa0525000:CDS | 45.0% | |
| CTTCCAGTACTAGATTCCCT+TGG | + | chr3_4:78538401-78538420 | None:intergenic | 45.0% | |
| CTCTTCTTGGACATCAAACC+TGG | + | chr3_4:78538624-78538643 | None:intergenic | 45.0% | |
| CCTAAAGATTCCTAGCTAGC+TGG | + | chr3_4:78538742-78538761 | None:intergenic | 45.0% | |
| CCAGCTAGCTAGGAATCTTT+AGG | - | chr3_4:78538739-78538758 | Msa0525000:intron | 45.0% | |
| !! | TGGCGCTGATTAGTGTATCT+CGG | - | chr3_4:78538789-78538808 | Msa0525000:five_prime_UTR | 45.0% |
| AGCAGAAAGATGAGCAGACC+AGG | - | chr3_4:78537618-78537637 | Msa0525000:three_prime_UTR | 50.0% | |
| AGATGAGCAGACCAGGAGAT+TGG | - | chr3_4:78537625-78537644 | Msa0525000:intron | 50.0% | |
| TTCTTGACTCCCCACATCGT+TGG | + | chr3_4:78537698-78537717 | None:intergenic | 50.0% | |
| ! | TTTGGTGGCTCCTTTCTTGG+TGG | - | chr3_4:78537747-78537766 | Msa0525000:intron | 50.0% |
| AGAGCCTCTTCCACCAAGAA+AGG | + | chr3_4:78537760-78537779 | None:intergenic | 50.0% | |
| ! | TCCCCTTTTCCTTTCACCAC+CGG | - | chr3_4:78537783-78537802 | Msa0525000:intron | 50.0% |
| ! | CACATTTGAAGCAGCTGGAG+CGG | + | chr3_4:78537875-78537894 | None:intergenic | 50.0% |
| CTTCAAATGTGGTGCCCCTA+AGG | - | chr3_4:78537884-78537903 | Msa0525000:CDS | 50.0% | |
| !!! | TCACCATACGGTTTTGGAGG+AGG | - | chr3_4:78537957-78537976 | Msa0525000:intron | 50.0% |
| ATTCCCTTGGACCGTTGCAT+CGG | + | chr3_4:78538388-78538407 | None:intergenic | 50.0% | |
| GGTCCAAGGGAATCTAGTAC+TGG | - | chr3_4:78538395-78538414 | Msa0525000:CDS | 50.0% | |
| AGCAGAAAGATGAGCAGACC+AGG | - | chr3_4:78537618-78537637 | Msa0525000:three_prime_UTR | 50.0% | |
| AGATGAGCAGACCAGGAGAT+TGG | - | chr3_4:78537625-78537644 | Msa0525000:intron | 50.0% | |
| TTCTTGACTCCCCACATCGT+TGG | + | chr3_4:78537698-78537717 | None:intergenic | 50.0% | |
| ! | TTTGGTGGCTCCTTTCTTGG+TGG | - | chr3_4:78537747-78537766 | Msa0525000:intron | 50.0% |
| AGAGCCTCTTCCACCAAGAA+AGG | + | chr3_4:78537760-78537779 | None:intergenic | 50.0% | |
| ! | TCCCCTTTTCCTTTCACCAC+CGG | - | chr3_4:78537783-78537802 | Msa0525000:intron | 50.0% |
| ! | CACATTTGAAGCAGCTGGAG+CGG | + | chr3_4:78537875-78537894 | None:intergenic | 50.0% |
| CTTCAAATGTGGTGCCCCTA+AGG | - | chr3_4:78537884-78537903 | Msa0525000:CDS | 50.0% | |
| !!! | TCACCATACGGTTTTGGAGG+AGG | - | chr3_4:78537957-78537976 | Msa0525000:intron | 50.0% |
| ATTCCCTTGGACCGTTGCAT+CGG | + | chr3_4:78538388-78538407 | None:intergenic | 50.0% | |
| GGTCCAAGGGAATCTAGTAC+TGG | - | chr3_4:78538395-78538414 | Msa0525000:CDS | 50.0% | |
| GACCAGGAGATTGGAACTGC+AGG | - | chr3_4:78537634-78537653 | Msa0525000:intron | 55.0% | |
| GTCCTGCAGTTCCAATCTCC+TGG | + | chr3_4:78537639-78537658 | None:intergenic | 55.0% | |
| !! | AGAATGATTTCTGGCGGCGG+CGG | - | chr3_4:78537714-78537733 | Msa0525000:intron | 55.0% |
| GGCTCCTTTCTTGGTGGAAG+AGG | - | chr3_4:78537753-78537772 | Msa0525000:intron | 55.0% | |
| GCCGGTGGTGAAAGGAAAAG+GGG | + | chr3_4:78537787-78537806 | None:intergenic | 55.0% | |
| GGCCGGTGGTGAAAGGAAAA+GGG | + | chr3_4:78537788-78537807 | None:intergenic | 55.0% | |
| AGTCACCAGGACGGACATCA+GGG | + | chr3_4:78537809-78537828 | None:intergenic | 55.0% | |
| CGCTCCAGCTGCTTCAAATG+TGG | - | chr3_4:78537873-78537892 | Msa0525000:CDS | 55.0% | |
| ! | GGCACCACATTTGAAGCAGC+TGG | + | chr3_4:78537880-78537899 | None:intergenic | 55.0% |
| GTCTGAGGAGTCAGAGGAGA+AGG | + | chr3_4:78537919-78537938 | None:intergenic | 55.0% | |
| TGGCATGTCTGAGGAGTCAG+AGG | + | chr3_4:78537925-78537944 | None:intergenic | 55.0% | |
| CTGCCTCCTCCAAAACCGTA+TGG | + | chr3_4:78537963-78537982 | None:intergenic | 55.0% | |
| CCTGGTGCATATCCAGTCAC+CGG | + | chr3_4:78538024-78538043 | None:intergenic | 55.0% | |
| CTACCGATGCAACGGTCCAA+GGG | - | chr3_4:78538382-78538401 | Msa0525000:CDS | 55.0% | |
| GACCAGGAGATTGGAACTGC+AGG | - | chr3_4:78537634-78537653 | Msa0525000:intron | 55.0% | |
| GTCCTGCAGTTCCAATCTCC+TGG | + | chr3_4:78537639-78537658 | None:intergenic | 55.0% | |
| !! | AGAATGATTTCTGGCGGCGG+CGG | - | chr3_4:78537714-78537733 | Msa0525000:intron | 55.0% |
| GGCTCCTTTCTTGGTGGAAG+AGG | - | chr3_4:78537753-78537772 | Msa0525000:intron | 55.0% | |
| GCCGGTGGTGAAAGGAAAAG+GGG | + | chr3_4:78537787-78537806 | None:intergenic | 55.0% | |
| GGCCGGTGGTGAAAGGAAAA+GGG | + | chr3_4:78537788-78537807 | None:intergenic | 55.0% | |
| AGTCACCAGGACGGACATCA+GGG | + | chr3_4:78537809-78537828 | None:intergenic | 55.0% | |
| CGCTCCAGCTGCTTCAAATG+TGG | - | chr3_4:78537873-78537892 | Msa0525000:CDS | 55.0% | |
| ! | GGCACCACATTTGAAGCAGC+TGG | + | chr3_4:78537880-78537899 | None:intergenic | 55.0% |
| GTCTGAGGAGTCAGAGGAGA+AGG | + | chr3_4:78537919-78537938 | None:intergenic | 55.0% | |
| TGGCATGTCTGAGGAGTCAG+AGG | + | chr3_4:78537925-78537944 | None:intergenic | 55.0% | |
| CTGCCTCCTCCAAAACCGTA+TGG | + | chr3_4:78537963-78537982 | None:intergenic | 55.0% | |
| CCTGGTGCATATCCAGTCAC+CGG | + | chr3_4:78538024-78538043 | None:intergenic | 55.0% | |
| CTACCGATGCAACGGTCCAA+GGG | - | chr3_4:78538382-78538401 | Msa0525000:CDS | 55.0% | |
| GGGCCGGTGGTGAAAGGAAA+AGG | + | chr3_4:78537789-78537808 | None:intergenic | 60.0% | |
| ACATCAGGGCCGGTGGTGAA+AGG | + | chr3_4:78537795-78537814 | None:intergenic | 60.0% | |
| CAGTCACCAGGACGGACATC+AGG | + | chr3_4:78537810-78537829 | None:intergenic | 60.0% | |
| CTGATGTCCGTCCTGGTGAC+TGG | - | chr3_4:78537808-78537827 | Msa0525000:intron | 60.0% | |
| ! | TTTGAAGCAGCTGGAGCGGC+TGG | + | chr3_4:78537871-78537890 | None:intergenic | 60.0% |
| AGTCACCGGATTTCCAGCCG+GGG | + | chr3_4:78538010-78538029 | None:intergenic | 60.0% | |
| CAGTCACCGGATTTCCAGCC+GGG | + | chr3_4:78538011-78538030 | None:intergenic | 60.0% | |
| CCAGTCACCGGATTTCCAGC+CGG | + | chr3_4:78538012-78538031 | None:intergenic | 60.0% | |
| CCGGTGACTGGATATGCACC+AGG | - | chr3_4:78538021-78538040 | Msa0525000:intron | 60.0% | |
| GCTACCGATGCAACGGTCCA+AGG | - | chr3_4:78538381-78538400 | Msa0525000:CDS | 60.0% | |
| GGGCCGGTGGTGAAAGGAAA+AGG | + | chr3_4:78537789-78537808 | None:intergenic | 60.0% | |
| ACATCAGGGCCGGTGGTGAA+AGG | + | chr3_4:78537795-78537814 | None:intergenic | 60.0% | |
| CAGTCACCAGGACGGACATC+AGG | + | chr3_4:78537810-78537829 | None:intergenic | 60.0% | |
| CTGATGTCCGTCCTGGTGAC+TGG | - | chr3_4:78537808-78537827 | Msa0525000:intron | 60.0% | |
| ! | TTTGAAGCAGCTGGAGCGGC+TGG | + | chr3_4:78537871-78537890 | None:intergenic | 60.0% |
| AGTCACCGGATTTCCAGCCG+GGG | + | chr3_4:78538010-78538029 | None:intergenic | 60.0% | |
| CAGTCACCGGATTTCCAGCC+GGG | + | chr3_4:78538011-78538030 | None:intergenic | 60.0% | |
| CCAGTCACCGGATTTCCAGC+CGG | + | chr3_4:78538012-78538031 | None:intergenic | 60.0% | |
| CCGGTGACTGGATATGCACC+AGG | - | chr3_4:78538021-78538040 | Msa0525000:intron | 60.0% | |
| GCTACCGATGCAACGGTCCA+AGG | - | chr3_4:78538381-78538400 | Msa0525000:CDS | 60.0% | |
| !!! | GGCGGCGCCGTTGATTTTGG+TGG | - | chr3_4:78537732-78537751 | Msa0525000:intron | 65.0% |
| ACCAGGACGGACATCAGGGC+CGG | + | chr3_4:78537805-78537824 | None:intergenic | 65.0% | |
| !!! | GGTTTTGGAGGAGGCAGCGC+CGG | - | chr3_4:78537966-78537985 | Msa0525000:intron | 65.0% |
| ACTCGCCCCGGCTGGAAATC+CGG | - | chr3_4:78538002-78538021 | Msa0525000:intron | 65.0% | |
| CCGGCTGGAAATCCGGTGAC+TGG | - | chr3_4:78538009-78538028 | Msa0525000:intron | 65.0% | |
| !!! | GGCGGCGCCGTTGATTTTGG+TGG | - | chr3_4:78537732-78537751 | Msa0525000:intron | 65.0% |
| ACCAGGACGGACATCAGGGC+CGG | + | chr3_4:78537805-78537824 | None:intergenic | 65.0% | |
| !!! | GGTTTTGGAGGAGGCAGCGC+CGG | - | chr3_4:78537966-78537985 | Msa0525000:intron | 65.0% |
| ACTCGCCCCGGCTGGAAATC+CGG | - | chr3_4:78538002-78538021 | Msa0525000:intron | 65.0% | |
| CCGGCTGGAAATCCGGTGAC+TGG | - | chr3_4:78538009-78538028 | Msa0525000:intron | 65.0% | |
| !!! | GGCGGCGGCGCCGTTGATTT+TGG | - | chr3_4:78537729-78537748 | Msa0525000:intron | 70.0% |
| AGGACGGACATCAGGGCCGG+TGG | + | chr3_4:78537802-78537821 | None:intergenic | 70.0% | |
| ACCGGCCCTGATGTCCGTCC+TGG | - | chr3_4:78537801-78537820 | Msa0525000:intron | 70.0% | |
| ! | TTTGGAGGAGGCAGCGCCGG+TGG | - | chr3_4:78537969-78537988 | Msa0525000:intron | 70.0% |
| !! | GCGAGTGGAGGCACCACCAC+CGG | + | chr3_4:78537988-78538007 | None:intergenic | 70.0% |
| TTTCCAGCCGGGGCGAGTGG+AGG | + | chr3_4:78538000-78538019 | None:intergenic | 70.0% | |
| GGATTTCCAGCCGGGGCGAG+TGG | + | chr3_4:78538003-78538022 | None:intergenic | 70.0% | |
| !!! | GGCGGCGGCGCCGTTGATTT+TGG | - | chr3_4:78537729-78537748 | Msa0525000:intron | 70.0% |
| AGGACGGACATCAGGGCCGG+TGG | + | chr3_4:78537802-78537821 | None:intergenic | 70.0% | |
| ACCGGCCCTGATGTCCGTCC+TGG | - | chr3_4:78537801-78537820 | Msa0525000:intron | 70.0% | |
| ! | TTTGGAGGAGGCAGCGCCGG+TGG | - | chr3_4:78537969-78537988 | Msa0525000:intron | 70.0% |
| !! | GCGAGTGGAGGCACCACCAC+CGG | + | chr3_4:78537988-78538007 | None:intergenic | 70.0% |
| TTTCCAGCCGGGGCGAGTGG+AGG | + | chr3_4:78538000-78538019 | None:intergenic | 70.0% | |
| GGATTTCCAGCCGGGGCGAG+TGG | + | chr3_4:78538003-78538022 | None:intergenic | 70.0% | |
| GGTGGTGCCTCCACTCGCCC+CGG | - | chr3_4:78537990-78538009 | Msa0525000:intron | 75.0% | |
| GGTGGTGCCTCCACTCGCCC+CGG | - | chr3_4:78537990-78538009 | Msa0525000:intron | 75.0% | |
| !!! | GGAGGAGGCAGCGCCGGTGG+TGG | - | chr3_4:78537972-78537991 | Msa0525000:intron | 80.0% |
| ! | GTGCCTCCACTCGCCCCGGC+TGG | - | chr3_4:78537994-78538013 | Msa0525000:intron | 80.0% |
| !!! | GGAGGAGGCAGCGCCGGTGG+TGG | - | chr3_4:78537972-78537991 | Msa0525000:intron | 80.0% |
| ! | GTGCCTCCACTCGCCCCGGC+TGG | - | chr3_4:78537994-78538013 | Msa0525000:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 78537370 | 78538894 | 78537370 | ID=Msa0525000;Name=Msa0525000 |
| chr3_4 | mRNA | 78537370 | 78538894 | 78537370 | ID=Msa0525000-mRNA-1;Parent=Msa0525000;Name=Msa0525000-mRNA-1;_AED=0.12;_eAED=0.12;_QI=150|1|1|1|0.33|0.5|4|283|171 |
| chr3_4 | exon | 78537370 | 78537639 | 78537370 | ID=Msa0525000-mRNA-1:exon:23351;Parent=Msa0525000-mRNA-1 |
| chr3_4 | exon | 78537812 | 78537924 | 78537812 | ID=Msa0525000-mRNA-1:exon:23350;Parent=Msa0525000-mRNA-1 |
| chr3_4 | exon | 78538222 | 78538651 | 78538222 | ID=Msa0525000-mRNA-1:exon:23349;Parent=Msa0525000-mRNA-1 |
| chr3_4 | exon | 78538759 | 78538894 | 78538759 | ID=Msa0525000-mRNA-1:exon:23348;Parent=Msa0525000-mRNA-1 |
| chr3_4 | five_prime_UTR | 78538759 | 78538894 | 78538759 | ID=Msa0525000-mRNA-1:five_prime_utr;Parent=Msa0525000-mRNA-1 |
| chr3_4 | five_prime_UTR | 78538638 | 78538651 | 78538638 | ID=Msa0525000-mRNA-1:five_prime_utr;Parent=Msa0525000-mRNA-1 |
| chr3_4 | CDS | 78538222 | 78538637 | 78538222 | ID=Msa0525000-mRNA-1:cds;Parent=Msa0525000-mRNA-1 |
| chr3_4 | CDS | 78537825 | 78537924 | 78537825 | ID=Msa0525000-mRNA-1:cds;Parent=Msa0525000-mRNA-1 |
| chr3_4 | three_prime_UTR | 78537812 | 78537824 | 78537812 | ID=Msa0525000-mRNA-1:three_prime_utr;Parent=Msa0525000-mRNA-1 |
| chr3_4 | three_prime_UTR | 78537370 | 78537639 | 78537370 | ID=Msa0525000-mRNA-1:three_prime_utr;Parent=Msa0525000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
