Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607490 | GAU35771.1 | 89.535 | 86 | 5 | 1 | 1 | 82 | 1 | 86 | 5.09e-46 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607490 | sp|Q9C8K2|AB12G_ARATH | 78.333 | 60 | 13 | 0 | 23 | 82 | 18 | 77 | 5.61e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607490 | A0A2Z6MWG7 | 89.535 | 86 | 5 | 1 | 1 | 82 | 1 | 86 | 2.43e-46 | 154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607490 | Msa0607500 | 0.802961 | 4.374696e-49 | -8.615850e-47 |
| Msa0607490 | Msa0619980 | 0.832530 | 8.970551e-56 | -8.615850e-47 |
| Msa0607490 | Msa0873190 | 0.801007 | 1.103053e-48 | -8.615850e-47 |
| Msa0607490 | Msa0905550 | 0.814220 | 1.721450e-51 | -8.615850e-47 |
| Msa0607490 | Msa0906370 | 0.821826 | 3.283599e-53 | -8.615850e-47 |
| Msa0607490 | Msa0937550 | 0.825505 | 4.520355e-54 | -8.615850e-47 |
| Msa0607490 | Msa1107440 | 0.829237 | 5.758723e-55 | -8.615850e-47 |
| Msa0607490 | Msa1150970 | 0.858737 | 6.709960e-63 | -8.615850e-47 |
| Msa0607490 | Msa1254190 | 0.803562 | 3.285354e-49 | -8.615850e-47 |
| Msa0607490 | Msa1420060 | 0.827851 | 1.245250e-54 | -8.615850e-47 |
| Msa0134130 | Msa0607490 | 0.823584 | 1.280303e-53 | -8.615850e-47 |
| Msa0161200 | Msa0607490 | 0.830516 | 2.810051e-55 | -8.615850e-47 |
| Msa0203160 | Msa0607490 | 0.816353 | 5.777904e-52 | -8.615850e-47 |
| Msa0219190 | Msa0607490 | 0.806141 | 9.499526e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607490 | MtrunA17_Chr4g0039251 | 89.535 | 86 | 5 | 1 | 1 | 82 | 41 | 126 | 1.27e-45 | 156 |
| Msa0607490 | MtrunA17_Chr4g0039221 | 89.062 | 64 | 6 | 1 | 29 | 92 | 9 | 71 | 6.12e-33 | 110 |
| Msa0607490 | MtrunA17_Chr4g0039261 | 60.714 | 84 | 31 | 1 | 1 | 82 | 1 | 84 | 6.24e-26 | 100 |
| Msa0607490 | MtrunA17_Chr7g0257321 | 62.963 | 54 | 17 | 1 | 29 | 82 | 3 | 53 | 4.55e-17 | 69.7 |
| Msa0607490 | MtrunA17_Chr4g0050191 | 55.556 | 63 | 26 | 1 | 29 | 91 | 41 | 101 | 3.36e-16 | 68.6 |
| Msa0607490 | MtrunA17_Chr4g0050261 | 52.174 | 69 | 28 | 1 | 14 | 82 | 43 | 106 | 3.42e-16 | 73.2 |
| Msa0607490 | MtrunA17_Chr4g0050251 | 52.174 | 69 | 28 | 1 | 14 | 82 | 43 | 106 | 6.63e-16 | 72.4 |
| Msa0607490 | MtrunA17_Chr4g0026741 | 52.632 | 57 | 27 | 0 | 26 | 82 | 46 | 102 | 3.56e-13 | 61.6 |
| Msa0607490 | MtrunA17_Chr4g0050221 | 50.820 | 61 | 28 | 2 | 22 | 82 | 6 | 64 | 6.98e-13 | 63.5 |
| Msa0607490 | MtrunA17_Chr4g0050291 | 43.373 | 83 | 35 | 4 | 2 | 82 | 11 | 83 | 9.21e-13 | 63.2 |
| Msa0607490 | MtrunA17_Chr6g0477811 | 52.830 | 53 | 24 | 1 | 29 | 81 | 47 | 98 | 5.31e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607490 | AT1G51500.1 | 78.333 | 60 | 13 | 0 | 23 | 82 | 18 | 77 | 5.71e-28 | 107 |
| Msa0607490 | AT3G21090.1 | 76.667 | 60 | 14 | 0 | 23 | 82 | 19 | 78 | 1.43e-27 | 105 |
| Msa0607490 | AT1G51460.1 | 74.545 | 55 | 14 | 0 | 28 | 82 | 9 | 63 | 1.78e-23 | 94.4 |
| Msa0607490 | AT1G17840.1 | 58.491 | 53 | 21 | 1 | 29 | 81 | 50 | 101 | 7.32e-15 | 69.7 |
Find 34 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGGTCCTTTCCCAAAATT+TGG | 0.196264 | 4_2:+54305716 | None:intergenic |
| AGGTTACTTAATGGGTTAAA+TGG | 0.204131 | 4_2:-54305689 | Msa0607490:CDS |
| AGAGTTATGTTGCCAAATTT+TGG | 0.218246 | 4_2:-54305728 | Msa0607490:CDS |
| AAATTAGGTCCTCTTGCTTT+TGG | 0.230094 | 4_2:-54304241 | Msa0607490:CDS |
| AATTGGCAGGGCCGGACCTT+GGG | 0.239395 | 4_2:-54304405 | Msa0607490:intron |
| ACTTTGCTTGATTCACTTGC+AGG | 0.260697 | 4_2:-54305608 | Msa0607490:intron |
| CCAACCAAAAGGTTACTTAA+TGG | 0.279783 | 4_2:-54305698 | Msa0607490:CDS |
| CAACCAAAAGGTTACTTAAT+GGG | 0.301054 | 4_2:-54305697 | Msa0607490:CDS |
| CAATTGGCAGGGCCGGACCT+TGG | 0.330954 | 4_2:-54304406 | Msa0607490:intron |
| TAACCCATTAAGTAACCTTT+TGG | 0.336088 | 4_2:+54305694 | None:intergenic |
| GTCATTCAAAGAGAATATAA+AGG | 0.381232 | 4_2:-54304207 | None:intergenic |
| ATGGCTATCATGGGTCCTTC+TGG | 0.391993 | 4_2:-54305644 | Msa0607490:CDS |
| ATCATGGGTCCTTCTGGCTC+TGG | 0.404628 | 4_2:-54305638 | Msa0607490:CDS |
| CATAAACATAACATGGAGAT+TGG | 0.464074 | 4_2:-54305842 | None:intergenic |
| TGGTAGAATCATGGCTATCA+TGG | 0.474736 | 4_2:-54305654 | Msa0607490:CDS |
| TGCTGAGCCTGGTAGAATCA+TGG | 0.476639 | 4_2:-54305663 | Msa0607490:CDS |
| ATTGGCAGGGCCGGACCTTG+GGG | 0.491884 | 4_2:-54304404 | Msa0607490:intron |
| GGTTTGCACACCCCAAGGTC+CGG | 0.495430 | 4_2:+54304394 | None:intergenic |
| GCATATTGTGGTCTTAATAG+AGG | 0.499807 | 4_2:-54305776 | Msa0607490:CDS |
| TTGGGAAAGGACCAACCAAA+AGG | 0.519160 | 4_2:-54305709 | Msa0607490:CDS |
| GGGGTGTGCAAACCGCTCAA+TGG | 0.550530 | 4_2:-54304385 | Msa0607490:CDS |
| TTTAGGCTCATACCTTGGGG+AGG | 0.577828 | 4_2:+54304355 | None:intergenic |
| GGTAGAATCATGGCTATCAT+GGG | 0.580289 | 4_2:-54305653 | Msa0607490:CDS |
| TGCAAACCGCTCAATGGAGT+CGG | 0.583247 | 4_2:-54304379 | Msa0607490:CDS |
| TGCAAGTGAATCAAGCAAAG+TGG | 0.588163 | 4_2:+54305610 | None:intergenic |
| TGAGCGGTTTGCACACCCCA+AGG | 0.599657 | 4_2:+54304389 | None:intergenic |
| ATGATAGCCATGATTCTACC+AGG | 0.610860 | 4_2:+54305656 | None:intergenic |
| CCACCTAAACCAAAAGCAAG+AGG | 0.619302 | 4_2:+54304232 | None:intergenic |
| CAACAACAAAGGATGCAACA+TGG | 0.630369 | 4_2:-54305816 | Msa0607490:CDS |
| AGCGAGGATGAAGCATATTG+TGG | 0.633207 | 4_2:-54305788 | Msa0607490:CDS |
| AATGGAGTCGGACCTCCCCA+AGG | 0.643875 | 4_2:-54304367 | Msa0607490:intron |
| GGAGGTCCGACTCCATTGAG+CGG | 0.651110 | 4_2:+54304373 | None:intergenic |
| ATGCAACATGGATGAGAGCG+AGG | 0.652234 | 4_2:-54305804 | Msa0607490:CDS |
| GAGATTGGTAGCAACAACAA+AGG | 0.688155 | 4_2:-54305827 | Msa0607490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTATAATTGATGATATAT+AGG | + | chr4_2:54305322-54305341 | None:intergenic | 10.0% |
| !! | ACAATAAAAATATAGAAAAT+AGG | - | chr4_2:54305463-54305482 | Msa0607490:intron | 10.0% |
| !!! | TATTATAATTGATGATATAT+AGG | + | chr4_2:54305322-54305341 | None:intergenic | 10.0% |
| !! | ACAATAAAAATATAGAAAAT+AGG | - | chr4_2:54305463-54305482 | Msa0607490:intron | 10.0% |
| !! | AAAAACATGTTGAAATATTT+CGG | - | chr4_2:54304576-54304595 | Msa0607490:intron | 15.0% |
| !! | ATAATAGAAGAAAAAAATGT+AGG | + | chr4_2:54305181-54305200 | None:intergenic | 15.0% |
| !! | AAAAACATGTTGAAATATTT+CGG | - | chr4_2:54304576-54304595 | Msa0607490:intron | 15.0% |
| !! | ATAATAGAAGAAAAAAATGT+AGG | + | chr4_2:54305181-54305200 | None:intergenic | 15.0% |
| !!! | ACATGTTTTTTGATGTTTTA+TGG | + | chr4_2:54304566-54304585 | None:intergenic | 20.0% |
| !!! | TTTACAATTTTGACATTGTT+GGG | + | chr4_2:54305045-54305064 | None:intergenic | 20.0% |
| !!! | ATTTACAATTTTGACATTGT+TGG | + | chr4_2:54305046-54305065 | None:intergenic | 20.0% |
| !! | GTAAAATTAAAAAGTTGAGA+AGG | - | chr4_2:54305487-54305506 | Msa0607490:intron | 20.0% |
| !! | AATTGAATAAGAGAAATACT+TGG | + | chr4_2:54305619-54305638 | None:intergenic | 20.0% |
| !! | AAGTATTTCTCTTATTCAAT+TGG | - | chr4_2:54305618-54305637 | Msa0607490:CDS | 20.0% |
| !!! | TACTGAGCTATAATTTTTTT+AGG | + | chr4_2:54305705-54305724 | None:intergenic | 20.0% |
| !!! | GTTTTAGGATTATTCAAATT+AGG | - | chr4_2:54305784-54305803 | Msa0607490:CDS | 20.0% |
| !!! | ACATGTTTTTTGATGTTTTA+TGG | + | chr4_2:54304566-54304585 | None:intergenic | 20.0% |
| !!! | TTTACAATTTTGACATTGTT+GGG | + | chr4_2:54305045-54305064 | None:intergenic | 20.0% |
| !!! | ATTTACAATTTTGACATTGT+TGG | + | chr4_2:54305046-54305065 | None:intergenic | 20.0% |
| !! | GTAAAATTAAAAAGTTGAGA+AGG | - | chr4_2:54305487-54305506 | Msa0607490:intron | 20.0% |
| !! | AATTGAATAAGAGAAATACT+TGG | + | chr4_2:54305619-54305638 | None:intergenic | 20.0% |
| !! | AAGTATTTCTCTTATTCAAT+TGG | - | chr4_2:54305618-54305637 | Msa0607490:CDS | 20.0% |
| !!! | TACTGAGCTATAATTTTTTT+AGG | + | chr4_2:54305705-54305724 | None:intergenic | 20.0% |
| !!! | GTTTTAGGATTATTCAAATT+AGG | - | chr4_2:54305784-54305803 | Msa0607490:CDS | 20.0% |
| ! | TCATAAGATGGAAAAAGAAA+CGG | + | chr4_2:54304488-54304507 | None:intergenic | 25.0% |
| !! | TTTAAAATCCGAAATGCATA+GGG | + | chr4_2:54304523-54304542 | None:intergenic | 25.0% |
| !!! | TTTTAAAATCCGAAATGCAT+AGG | + | chr4_2:54304524-54304543 | None:intergenic | 25.0% |
| ! | TACATAGGACATATTTAAGA+AGG | + | chr4_2:54304657-54304676 | None:intergenic | 25.0% |
| ! | AACCAAAGAAACATATACAT+AGG | + | chr4_2:54304672-54304691 | None:intergenic | 25.0% |
| ! | CATTGAAAGAAAGCAATAAA+AGG | + | chr4_2:54304803-54304822 | None:intergenic | 25.0% |
| !! | CTTTTATTGCTTTCTTTCAA+TGG | - | chr4_2:54304801-54304820 | Msa0607490:intron | 25.0% |
| ! | TGGATACTACACTTTATAAT+TGG | - | chr4_2:54304865-54304884 | Msa0607490:intron | 25.0% |
| ! | ACACATTCTAGGTAAAAAAT+TGG | + | chr4_2:54304969-54304988 | None:intergenic | 25.0% |
| !!! | TTACAATTTTGACATTGTTG+GGG | + | chr4_2:54305044-54305063 | None:intergenic | 25.0% |
| ! | TTTGGTAAGAGAAAATGTAT+AGG | + | chr4_2:54305242-54305261 | None:intergenic | 25.0% |
| !!! | TGCATATAGGATTTTTTTAG+GGG | + | chr4_2:54305278-54305297 | None:intergenic | 25.0% |
| !!! | GTGCATATAGGATTTTTTTA+GGG | + | chr4_2:54305279-54305298 | None:intergenic | 25.0% |
| !!! | TGTGCATATAGGATTTTTTT+AGG | + | chr4_2:54305280-54305299 | None:intergenic | 25.0% |
| ! | ATAAAATTCTATCTTCTGCT+TGG | - | chr4_2:54305341-54305360 | Msa0607490:intron | 25.0% |
| ! | ATATTAGGTAAAACTCATGT+GGG | + | chr4_2:54305553-54305572 | None:intergenic | 25.0% |
| ! | CTAAAACAAGACAACAAAAA+AGG | + | chr4_2:54305771-54305790 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTGTCTTGTTTT+AGG | - | chr4_2:54305769-54305788 | Msa0607490:CDS | 25.0% |
| ! | TCATAAGATGGAAAAAGAAA+CGG | + | chr4_2:54304488-54304507 | None:intergenic | 25.0% |
| !! | TTTAAAATCCGAAATGCATA+GGG | + | chr4_2:54304523-54304542 | None:intergenic | 25.0% |
| !!! | TTTTAAAATCCGAAATGCAT+AGG | + | chr4_2:54304524-54304543 | None:intergenic | 25.0% |
| ! | TACATAGGACATATTTAAGA+AGG | + | chr4_2:54304657-54304676 | None:intergenic | 25.0% |
| ! | AACCAAAGAAACATATACAT+AGG | + | chr4_2:54304672-54304691 | None:intergenic | 25.0% |
| ! | CATTGAAAGAAAGCAATAAA+AGG | + | chr4_2:54304803-54304822 | None:intergenic | 25.0% |
| !! | CTTTTATTGCTTTCTTTCAA+TGG | - | chr4_2:54304801-54304820 | Msa0607490:intron | 25.0% |
| ! | TGGATACTACACTTTATAAT+TGG | - | chr4_2:54304865-54304884 | Msa0607490:intron | 25.0% |
| ! | ACACATTCTAGGTAAAAAAT+TGG | + | chr4_2:54304969-54304988 | None:intergenic | 25.0% |
| !!! | TTACAATTTTGACATTGTTG+GGG | + | chr4_2:54305044-54305063 | None:intergenic | 25.0% |
| ! | TTTGGTAAGAGAAAATGTAT+AGG | + | chr4_2:54305242-54305261 | None:intergenic | 25.0% |
| !!! | TGCATATAGGATTTTTTTAG+GGG | + | chr4_2:54305278-54305297 | None:intergenic | 25.0% |
| !!! | GTGCATATAGGATTTTTTTA+GGG | + | chr4_2:54305279-54305298 | None:intergenic | 25.0% |
| !!! | TGTGCATATAGGATTTTTTT+AGG | + | chr4_2:54305280-54305299 | None:intergenic | 25.0% |
| ! | ATAAAATTCTATCTTCTGCT+TGG | - | chr4_2:54305341-54305360 | Msa0607490:intron | 25.0% |
| ! | ATATTAGGTAAAACTCATGT+GGG | + | chr4_2:54305553-54305572 | None:intergenic | 25.0% |
| ! | CTAAAACAAGACAACAAAAA+AGG | + | chr4_2:54305771-54305790 | None:intergenic | 25.0% |
| !!! | CTTTTTTGTTGTCTTGTTTT+AGG | - | chr4_2:54305769-54305788 | Msa0607490:CDS | 25.0% |
| ! | AGAGTTATGTTGCCAAATTT+TGG | - | chr4_2:54304312-54304331 | Msa0607490:intron | 30.0% |
| ! | GAGTTATGTTGCCAAATTTT+GGG | - | chr4_2:54304313-54304332 | Msa0607490:intron | 30.0% |
| CAACCAAAAGGTTACTTAAT+GGG | - | chr4_2:54304343-54304362 | Msa0607490:intron | 30.0% | |
| ! | TAACCCATTAAGTAACCTTT+TGG | + | chr4_2:54304349-54304368 | None:intergenic | 30.0% |
| !! | AGGTTACTTAATGGGTTAAA+TGG | - | chr4_2:54304351-54304370 | Msa0607490:intron | 30.0% |
| !!! | TCGGATTTTAGAATCTGAAT+AGG | - | chr4_2:54304595-54304614 | Msa0607490:intron | 30.0% |
| !! | ATTACTTTTCCCATCTTATG+AGG | + | chr4_2:54304632-54304651 | None:intergenic | 30.0% |
| TCATAAGATGGGAAAAGTAA+TGG | - | chr4_2:54304631-54304650 | Msa0607490:intron | 30.0% | |
| GTCCTATGTATATGTTTCTT+TGG | - | chr4_2:54304667-54304686 | Msa0607490:intron | 30.0% | |
| ! | AACGTGATATTTGTGGTTTT+AGG | + | chr4_2:54304757-54304776 | None:intergenic | 30.0% |
| !!! | ACCACAAATATCACGTTTTT+TGG | - | chr4_2:54304760-54304779 | Msa0607490:intron | 30.0% |
| TCCAAAAAACGTGATATTTG+TGG | + | chr4_2:54304764-54304783 | None:intergenic | 30.0% | |
| !!! | CAAATATCACGTTTTTTGGA+AGG | - | chr4_2:54304764-54304783 | Msa0607490:intron | 30.0% |
| GATATCGAAATACACATTCT+AGG | + | chr4_2:54304980-54304999 | None:intergenic | 30.0% | |
| TGTGTATTTCGATATCATTG+AGG | - | chr4_2:54304984-54305003 | Msa0607490:intron | 30.0% | |
| GAAGAAAAAAATGTAGGATG+TGG | + | chr4_2:54305175-54305194 | None:intergenic | 30.0% | |
| !!! | GCATATAGGATTTTTTTAGG+GGG | + | chr4_2:54305277-54305296 | None:intergenic | 30.0% |
| TATAGGATTGAAGCAAAGTT+GGG | + | chr4_2:54305305-54305324 | None:intergenic | 30.0% | |
| ATATAGGATTGAAGCAAAGT+TGG | + | chr4_2:54305306-54305325 | None:intergenic | 30.0% | |
| AAATAAAACCTTGCACCATA+TGG | + | chr4_2:54305429-54305448 | None:intergenic | 30.0% | |
| CATATTAGGTAAAACTCATG+TGG | + | chr4_2:54305554-54305573 | None:intergenic | 30.0% | |
| TTAACACTCACTCTCATATT+AGG | + | chr4_2:54305568-54305587 | None:intergenic | 30.0% | |
| ATTTCTCTTATTCAATTGGC+AGG | - | chr4_2:54305622-54305641 | Msa0607490:CDS | 30.0% | |
| TTTCTCTTATTCAATTGGCA+GGG | - | chr4_2:54305623-54305642 | Msa0607490:CDS | 30.0% | |
| !!! | TTTTTTTAGGCTCATACCTT+GGG | + | chr4_2:54305692-54305711 | None:intergenic | 30.0% |
| !!! | ATTTTTTTAGGCTCATACCT+TGG | + | chr4_2:54305693-54305712 | None:intergenic | 30.0% |
| AAAAAGGAATGTGGAAACTT+GGG | + | chr4_2:54305755-54305774 | None:intergenic | 30.0% | |
| AAAAAAGGAATGTGGAAACT+TGG | + | chr4_2:54305756-54305775 | None:intergenic | 30.0% | |
| AAGACAACAAAAAAGGAATG+TGG | + | chr4_2:54305764-54305783 | None:intergenic | 30.0% | |
| ! | AGAGTTATGTTGCCAAATTT+TGG | - | chr4_2:54304312-54304331 | Msa0607490:intron | 30.0% |
| ! | GAGTTATGTTGCCAAATTTT+GGG | - | chr4_2:54304313-54304332 | Msa0607490:intron | 30.0% |
| CAACCAAAAGGTTACTTAAT+GGG | - | chr4_2:54304343-54304362 | Msa0607490:intron | 30.0% | |
| ! | TAACCCATTAAGTAACCTTT+TGG | + | chr4_2:54304349-54304368 | None:intergenic | 30.0% |
| !! | AGGTTACTTAATGGGTTAAA+TGG | - | chr4_2:54304351-54304370 | Msa0607490:intron | 30.0% |
| !!! | TCGGATTTTAGAATCTGAAT+AGG | - | chr4_2:54304595-54304614 | Msa0607490:intron | 30.0% |
| !! | ATTACTTTTCCCATCTTATG+AGG | + | chr4_2:54304632-54304651 | None:intergenic | 30.0% |
| TCATAAGATGGGAAAAGTAA+TGG | - | chr4_2:54304631-54304650 | Msa0607490:intron | 30.0% | |
| GTCCTATGTATATGTTTCTT+TGG | - | chr4_2:54304667-54304686 | Msa0607490:intron | 30.0% | |
| ! | AACGTGATATTTGTGGTTTT+AGG | + | chr4_2:54304757-54304776 | None:intergenic | 30.0% |
| !!! | ACCACAAATATCACGTTTTT+TGG | - | chr4_2:54304760-54304779 | Msa0607490:intron | 30.0% |
| TCCAAAAAACGTGATATTTG+TGG | + | chr4_2:54304764-54304783 | None:intergenic | 30.0% | |
| !!! | CAAATATCACGTTTTTTGGA+AGG | - | chr4_2:54304764-54304783 | Msa0607490:intron | 30.0% |
| GATATCGAAATACACATTCT+AGG | + | chr4_2:54304980-54304999 | None:intergenic | 30.0% | |
| TGTGTATTTCGATATCATTG+AGG | - | chr4_2:54304984-54305003 | Msa0607490:intron | 30.0% | |
| GAAGAAAAAAATGTAGGATG+TGG | + | chr4_2:54305175-54305194 | None:intergenic | 30.0% | |
| !!! | GCATATAGGATTTTTTTAGG+GGG | + | chr4_2:54305277-54305296 | None:intergenic | 30.0% |
| TATAGGATTGAAGCAAAGTT+GGG | + | chr4_2:54305305-54305324 | None:intergenic | 30.0% | |
| ATATAGGATTGAAGCAAAGT+TGG | + | chr4_2:54305306-54305325 | None:intergenic | 30.0% | |
| AAATAAAACCTTGCACCATA+TGG | + | chr4_2:54305429-54305448 | None:intergenic | 30.0% | |
| CATATTAGGTAAAACTCATG+TGG | + | chr4_2:54305554-54305573 | None:intergenic | 30.0% | |
| TTAACACTCACTCTCATATT+AGG | + | chr4_2:54305568-54305587 | None:intergenic | 30.0% | |
| ATTTCTCTTATTCAATTGGC+AGG | - | chr4_2:54305622-54305641 | Msa0607490:CDS | 30.0% | |
| TTTCTCTTATTCAATTGGCA+GGG | - | chr4_2:54305623-54305642 | Msa0607490:CDS | 30.0% | |
| !!! | TTTTTTTAGGCTCATACCTT+GGG | + | chr4_2:54305692-54305711 | None:intergenic | 30.0% |
| !!! | ATTTTTTTAGGCTCATACCT+TGG | + | chr4_2:54305693-54305712 | None:intergenic | 30.0% |
| AAAAAGGAATGTGGAAACTT+GGG | + | chr4_2:54305755-54305774 | None:intergenic | 30.0% | |
| AAAAAAGGAATGTGGAAACT+TGG | + | chr4_2:54305756-54305775 | None:intergenic | 30.0% | |
| AAGACAACAAAAAAGGAATG+TGG | + | chr4_2:54305764-54305783 | None:intergenic | 30.0% | |
| ! | GCATATTGTGGTCTTAATAG+AGG | - | chr4_2:54304264-54304283 | Msa0607490:intron | 35.0% |
| !! | ATAGAGGAAGCTTTTTAGCA+TGG | - | chr4_2:54304280-54304299 | Msa0607490:intron | 35.0% |
| !! | TAGAGGAAGCTTTTTAGCAT+GGG | - | chr4_2:54304281-54304300 | Msa0607490:intron | 35.0% |
| !! | ATGTTGCCAAATTTTGGGAA+AGG | - | chr4_2:54304318-54304337 | Msa0607490:intron | 35.0% |
| ! | CCATTAAGTAACCTTTTGGT+TGG | + | chr4_2:54304345-54304364 | None:intergenic | 35.0% |
| CCAACCAAAAGGTTACTTAA+TGG | - | chr4_2:54304342-54304361 | Msa0607490:intron | 35.0% | |
| GAAACGGTCATTTAAGAATG+AGG | + | chr4_2:54304472-54304491 | None:intergenic | 35.0% | |
| ATGCAAGAACCTCATAAGAT+GGG | - | chr4_2:54304620-54304639 | Msa0607490:intron | 35.0% | |
| CTCAAACATGAGTCAATTCA+AGG | - | chr4_2:54304727-54304746 | Msa0607490:intron | 35.0% | |
| ! | TCGAATAAGAGAGTGTGTTA+GGG | + | chr4_2:54304834-54304853 | None:intergenic | 35.0% |
| ! | ATCGAATAAGAGAGTGTGTT+AGG | + | chr4_2:54304835-54304854 | None:intergenic | 35.0% |
| TAACACACTCTCTTATTCGA+TGG | - | chr4_2:54304834-54304853 | Msa0607490:intron | 35.0% | |
| CTTATTCGATGGAATCTATG+TGG | - | chr4_2:54304845-54304864 | Msa0607490:intron | 35.0% | |
| !!! | AGGGGGTATAGGATTTTTTT+TGG | + | chr4_2:54305260-54305279 | None:intergenic | 35.0% |
| !!! | AGGATTTTTTTAGGGGGTAT+AGG | + | chr4_2:54305271-54305290 | None:intergenic | 35.0% |
| !!! | TGGTGCAAGGTTTTATTTTG+AGG | - | chr4_2:54305431-54305450 | Msa0607490:intron | 35.0% |
| !!! | GGTGCAAGGTTTTATTTTGA+GGG | - | chr4_2:54305432-54305451 | Msa0607490:intron | 35.0% |
| !!! | GTGCAAGGTTTTATTTTGAG+GGG | - | chr4_2:54305433-54305452 | Msa0607490:intron | 35.0% |
| !!! | TGCAAGGTTTTATTTTGAGG+GGG | - | chr4_2:54305434-54305453 | Msa0607490:intron | 35.0% |
| !!! | TTTTTTAGGCTCATACCTTG+GGG | + | chr4_2:54305691-54305710 | None:intergenic | 35.0% |
| AAAAGGAATGTGGAAACTTG+GGG | + | chr4_2:54305754-54305773 | None:intergenic | 35.0% | |
| ! | AAATTAGGTCCTCTTGCTTT+TGG | - | chr4_2:54305799-54305818 | Msa0607490:CDS | 35.0% |
| ! | GCATATTGTGGTCTTAATAG+AGG | - | chr4_2:54304264-54304283 | Msa0607490:intron | 35.0% |
| !! | ATAGAGGAAGCTTTTTAGCA+TGG | - | chr4_2:54304280-54304299 | Msa0607490:intron | 35.0% |
| !! | TAGAGGAAGCTTTTTAGCAT+GGG | - | chr4_2:54304281-54304300 | Msa0607490:intron | 35.0% |
| !! | ATGTTGCCAAATTTTGGGAA+AGG | - | chr4_2:54304318-54304337 | Msa0607490:intron | 35.0% |
| ! | CCATTAAGTAACCTTTTGGT+TGG | + | chr4_2:54304345-54304364 | None:intergenic | 35.0% |
| CCAACCAAAAGGTTACTTAA+TGG | - | chr4_2:54304342-54304361 | Msa0607490:intron | 35.0% | |
| GAAACGGTCATTTAAGAATG+AGG | + | chr4_2:54304472-54304491 | None:intergenic | 35.0% | |
| ATGCAAGAACCTCATAAGAT+GGG | - | chr4_2:54304620-54304639 | Msa0607490:intron | 35.0% | |
| CTCAAACATGAGTCAATTCA+AGG | - | chr4_2:54304727-54304746 | Msa0607490:intron | 35.0% | |
| ! | TCGAATAAGAGAGTGTGTTA+GGG | + | chr4_2:54304834-54304853 | None:intergenic | 35.0% |
| ! | ATCGAATAAGAGAGTGTGTT+AGG | + | chr4_2:54304835-54304854 | None:intergenic | 35.0% |
| TAACACACTCTCTTATTCGA+TGG | - | chr4_2:54304834-54304853 | Msa0607490:intron | 35.0% | |
| CTTATTCGATGGAATCTATG+TGG | - | chr4_2:54304845-54304864 | Msa0607490:intron | 35.0% | |
| !!! | AGGGGGTATAGGATTTTTTT+TGG | + | chr4_2:54305260-54305279 | None:intergenic | 35.0% |
| !!! | AGGATTTTTTTAGGGGGTAT+AGG | + | chr4_2:54305271-54305290 | None:intergenic | 35.0% |
| !!! | TGGTGCAAGGTTTTATTTTG+AGG | - | chr4_2:54305431-54305450 | Msa0607490:intron | 35.0% |
| !!! | GGTGCAAGGTTTTATTTTGA+GGG | - | chr4_2:54305432-54305451 | Msa0607490:intron | 35.0% |
| !!! | GTGCAAGGTTTTATTTTGAG+GGG | - | chr4_2:54305433-54305452 | Msa0607490:intron | 35.0% |
| !!! | TGCAAGGTTTTATTTTGAGG+GGG | - | chr4_2:54305434-54305453 | Msa0607490:intron | 35.0% |
| !!! | TTTTTTAGGCTCATACCTTG+GGG | + | chr4_2:54305691-54305710 | None:intergenic | 35.0% |
| AAAAGGAATGTGGAAACTTG+GGG | + | chr4_2:54305754-54305773 | None:intergenic | 35.0% | |
| ! | AAATTAGGTCCTCTTGCTTT+TGG | - | chr4_2:54305799-54305818 | Msa0607490:CDS | 35.0% |
| ! | GAGATTGGTAGCAACAACAA+AGG | - | chr4_2:54304213-54304232 | Msa0607490:CDS | 40.0% |
| CAACAACAAAGGATGCAACA+TGG | - | chr4_2:54304224-54304243 | Msa0607490:CDS | 40.0% | |
| GTTGGTCCTTTCCCAAAATT+TGG | + | chr4_2:54304327-54304346 | None:intergenic | 40.0% | |
| !! | TTAAATGGTTTTGCTGAGCC+TGG | - | chr4_2:54304366-54304385 | Msa0607490:intron | 40.0% |
| ATGATAGCCATGATTCTACC+AGG | + | chr4_2:54304387-54304406 | None:intergenic | 40.0% | |
| TGGTAGAATCATGGCTATCA+TGG | - | chr4_2:54304386-54304405 | Msa0607490:CDS | 40.0% | |
| GGTAGAATCATGGCTATCAT+GGG | - | chr4_2:54304387-54304406 | Msa0607490:CDS | 40.0% | |
| TGCAAGTGAATCAAGCAAAG+TGG | + | chr4_2:54304433-54304452 | None:intergenic | 40.0% | |
| ACTTTGCTTGATTCACTTGC+AGG | - | chr4_2:54304432-54304451 | Msa0607490:intron | 40.0% | |
| CGAGTGAGAAACTCATAAGA+TGG | + | chr4_2:54304500-54304519 | None:intergenic | 40.0% | |
| CATGCAAGAACCTCATAAGA+TGG | - | chr4_2:54304619-54304638 | Msa0607490:intron | 40.0% | |
| TGGGTCTCATCACTTTATGT+GGG | + | chr4_2:54304893-54304912 | None:intergenic | 40.0% | |
| AAAGTTGGGTCTGTGCATAT+AGG | + | chr4_2:54305291-54305310 | None:intergenic | 40.0% | |
| TTCTATCTTCTGCTTGGACT+TGG | - | chr4_2:54305347-54305366 | Msa0607490:intron | 40.0% | |
| TTGCACCATATGGCAAAGTT+GGG | + | chr4_2:54305419-54305438 | None:intergenic | 40.0% | |
| !! | AAAACTCATGTGGGCATTGA+CGG | + | chr4_2:54305544-54305563 | None:intergenic | 40.0% |
| ! | GAGATTGGTAGCAACAACAA+AGG | - | chr4_2:54304213-54304232 | Msa0607490:CDS | 40.0% |
| CAACAACAAAGGATGCAACA+TGG | - | chr4_2:54304224-54304243 | Msa0607490:CDS | 40.0% | |
| GTTGGTCCTTTCCCAAAATT+TGG | + | chr4_2:54304327-54304346 | None:intergenic | 40.0% | |
| !! | TTAAATGGTTTTGCTGAGCC+TGG | - | chr4_2:54304366-54304385 | Msa0607490:intron | 40.0% |
| ATGATAGCCATGATTCTACC+AGG | + | chr4_2:54304387-54304406 | None:intergenic | 40.0% | |
| TGGTAGAATCATGGCTATCA+TGG | - | chr4_2:54304386-54304405 | Msa0607490:CDS | 40.0% | |
| GGTAGAATCATGGCTATCAT+GGG | - | chr4_2:54304387-54304406 | Msa0607490:CDS | 40.0% | |
| TGCAAGTGAATCAAGCAAAG+TGG | + | chr4_2:54304433-54304452 | None:intergenic | 40.0% | |
| ACTTTGCTTGATTCACTTGC+AGG | - | chr4_2:54304432-54304451 | Msa0607490:intron | 40.0% | |
| CGAGTGAGAAACTCATAAGA+TGG | + | chr4_2:54304500-54304519 | None:intergenic | 40.0% | |
| CATGCAAGAACCTCATAAGA+TGG | - | chr4_2:54304619-54304638 | Msa0607490:intron | 40.0% | |
| TGGGTCTCATCACTTTATGT+GGG | + | chr4_2:54304893-54304912 | None:intergenic | 40.0% | |
| AAAGTTGGGTCTGTGCATAT+AGG | + | chr4_2:54305291-54305310 | None:intergenic | 40.0% | |
| TTCTATCTTCTGCTTGGACT+TGG | - | chr4_2:54305347-54305366 | Msa0607490:intron | 40.0% | |
| TTGCACCATATGGCAAAGTT+GGG | + | chr4_2:54305419-54305438 | None:intergenic | 40.0% | |
| !! | AAAACTCATGTGGGCATTGA+CGG | + | chr4_2:54305544-54305563 | None:intergenic | 40.0% |
| AGCGAGGATGAAGCATATTG+TGG | - | chr4_2:54304252-54304271 | Msa0607490:CDS | 45.0% | |
| TTGGGAAAGGACCAACCAAA+AGG | - | chr4_2:54304331-54304350 | Msa0607490:intron | 45.0% | |
| GTGGGTCTCATCACTTTATG+TGG | + | chr4_2:54304894-54304913 | None:intergenic | 45.0% | |
| ! | ATTTTGAACCCCTTGACCCA+GGG | + | chr4_2:54304937-54304956 | None:intergenic | 45.0% |
| ! | AATTTTGAACCCCTTGACCC+AGG | + | chr4_2:54304938-54304957 | None:intergenic | 45.0% |
| TTGACATTGTTGGGGAGTCT+AGG | + | chr4_2:54305036-54305055 | None:intergenic | 45.0% | |
| ACAGACCCAACTTTGCCATA+TGG | - | chr4_2:54305411-54305430 | Msa0607490:intron | 45.0% | |
| CTTGCACCATATGGCAAAGT+TGG | + | chr4_2:54305420-54305439 | None:intergenic | 45.0% | |
| CAACTTTGCCATATGGTGCA+AGG | - | chr4_2:54305418-54305437 | Msa0607490:intron | 45.0% | |
| TCTTATTCAATTGGCAGGGC+CGG | - | chr4_2:54305627-54305646 | Msa0607490:CDS | 45.0% | |
| !!! | GGTCCTCTTGCTTTTGGTTT+AGG | - | chr4_2:54305805-54305824 | Msa0607490:CDS | 45.0% |
| CCACCTAAACCAAAAGCAAG+AGG | + | chr4_2:54305811-54305830 | None:intergenic | 45.0% | |
| !!! | CCTCTTGCTTTTGGTTTAGG+TGG | - | chr4_2:54305808-54305827 | Msa0607490:CDS | 45.0% |
| AGCGAGGATGAAGCATATTG+TGG | - | chr4_2:54304252-54304271 | Msa0607490:CDS | 45.0% | |
| TTGGGAAAGGACCAACCAAA+AGG | - | chr4_2:54304331-54304350 | Msa0607490:intron | 45.0% | |
| GTGGGTCTCATCACTTTATG+TGG | + | chr4_2:54304894-54304913 | None:intergenic | 45.0% | |
| ! | ATTTTGAACCCCTTGACCCA+GGG | + | chr4_2:54304937-54304956 | None:intergenic | 45.0% |
| ! | AATTTTGAACCCCTTGACCC+AGG | + | chr4_2:54304938-54304957 | None:intergenic | 45.0% |
| TTGACATTGTTGGGGAGTCT+AGG | + | chr4_2:54305036-54305055 | None:intergenic | 45.0% | |
| ACAGACCCAACTTTGCCATA+TGG | - | chr4_2:54305411-54305430 | Msa0607490:intron | 45.0% | |
| CTTGCACCATATGGCAAAGT+TGG | + | chr4_2:54305420-54305439 | None:intergenic | 45.0% | |
| CAACTTTGCCATATGGTGCA+AGG | - | chr4_2:54305418-54305437 | Msa0607490:intron | 45.0% | |
| TCTTATTCAATTGGCAGGGC+CGG | - | chr4_2:54305627-54305646 | Msa0607490:CDS | 45.0% | |
| !!! | GGTCCTCTTGCTTTTGGTTT+AGG | - | chr4_2:54305805-54305824 | Msa0607490:CDS | 45.0% |
| CCACCTAAACCAAAAGCAAG+AGG | + | chr4_2:54305811-54305830 | None:intergenic | 45.0% | |
| !!! | CCTCTTGCTTTTGGTTTAGG+TGG | - | chr4_2:54305808-54305827 | Msa0607490:CDS | 45.0% |
| ATGCAACATGGATGAGAGCG+AGG | - | chr4_2:54304236-54304255 | Msa0607490:CDS | 50.0% | |
| TGCTGAGCCTGGTAGAATCA+TGG | - | chr4_2:54304377-54304396 | Msa0607490:CDS | 50.0% | |
| ATGGCTATCATGGGTCCTTC+TGG | - | chr4_2:54304396-54304415 | Msa0607490:CDS | 50.0% | |
| ! | GTGGATTTTCCAGAGCCAGA+AGG | + | chr4_2:54304414-54304433 | None:intergenic | 50.0% |
| CTCACTCGCCCTATGCATTT+CGG | - | chr4_2:54304512-54304531 | Msa0607490:intron | 50.0% | |
| TGCAAACCGCTCAATGGAGT+CGG | - | chr4_2:54305661-54305680 | Msa0607490:CDS | 50.0% | |
| TTTAGGCTCATACCTTGGGG+AGG | + | chr4_2:54305688-54305707 | None:intergenic | 50.0% | |
| TGGAAACTTGGGGAGTAGTG+GGG | + | chr4_2:54305744-54305763 | None:intergenic | 50.0% | |
| GTGGAAACTTGGGGAGTAGT+GGG | + | chr4_2:54305745-54305764 | None:intergenic | 50.0% | |
| TGTGGAAACTTGGGGAGTAG+TGG | + | chr4_2:54305746-54305765 | None:intergenic | 50.0% | |
| ATGCAACATGGATGAGAGCG+AGG | - | chr4_2:54304236-54304255 | Msa0607490:CDS | 50.0% | |
| TGCTGAGCCTGGTAGAATCA+TGG | - | chr4_2:54304377-54304396 | Msa0607490:CDS | 50.0% | |
| ATGGCTATCATGGGTCCTTC+TGG | - | chr4_2:54304396-54304415 | Msa0607490:CDS | 50.0% | |
| ! | GTGGATTTTCCAGAGCCAGA+AGG | + | chr4_2:54304414-54304433 | None:intergenic | 50.0% |
| CTCACTCGCCCTATGCATTT+CGG | - | chr4_2:54304512-54304531 | Msa0607490:intron | 50.0% | |
| TGCAAACCGCTCAATGGAGT+CGG | - | chr4_2:54305661-54305680 | Msa0607490:CDS | 50.0% | |
| TTTAGGCTCATACCTTGGGG+AGG | + | chr4_2:54305688-54305707 | None:intergenic | 50.0% | |
| TGGAAACTTGGGGAGTAGTG+GGG | + | chr4_2:54305744-54305763 | None:intergenic | 50.0% | |
| GTGGAAACTTGGGGAGTAGT+GGG | + | chr4_2:54305745-54305764 | None:intergenic | 50.0% | |
| TGTGGAAACTTGGGGAGTAG+TGG | + | chr4_2:54305746-54305765 | None:intergenic | 50.0% | |
| !! | ATCATGGGTCCTTCTGGCTC+TGG | - | chr4_2:54304402-54304421 | Msa0607490:intron | 55.0% |
| GTGATGAGACCCACATGCAG+TGG | - | chr4_2:54304900-54304919 | Msa0607490:intron | 55.0% | |
| !! | GAGTCTAGGAGCGTTTGGAG+CGG | + | chr4_2:54305022-54305041 | None:intergenic | 55.0% |
| !! | TTGGGGAGTCTAGGAGCGTT+TGG | + | chr4_2:54305027-54305046 | None:intergenic | 55.0% |
| ! | GCATTGACGGAGCCACATAG+TGG | + | chr4_2:54305531-54305550 | None:intergenic | 55.0% |
| !! | ATCATGGGTCCTTCTGGCTC+TGG | - | chr4_2:54304402-54304421 | Msa0607490:intron | 55.0% |
| GTGATGAGACCCACATGCAG+TGG | - | chr4_2:54304900-54304919 | Msa0607490:intron | 55.0% | |
| !! | GAGTCTAGGAGCGTTTGGAG+CGG | + | chr4_2:54305022-54305041 | None:intergenic | 55.0% |
| !! | TTGGGGAGTCTAGGAGCGTT+TGG | + | chr4_2:54305027-54305046 | None:intergenic | 55.0% |
| ! | GCATTGACGGAGCCACATAG+TGG | + | chr4_2:54305531-54305550 | None:intergenic | 55.0% |
| CTGGCAACGCCACTGCATGT+GGG | + | chr4_2:54304912-54304931 | None:intergenic | 60.0% | |
| TTGCCAGGACCCTGGGTCAA+GGG | - | chr4_2:54304925-54304944 | Msa0607490:intron | 60.0% | |
| ! | GAAGGTGCAGTTGAACCCCC+TGG | - | chr4_2:54305505-54305524 | Msa0607490:intron | 60.0% |
| TGAACCCCCTGGCCACTATG+TGG | - | chr4_2:54305516-54305535 | Msa0607490:intron | 60.0% | |
| ACGGAGCCACATAGTGGCCA+GGG | + | chr4_2:54305525-54305544 | None:intergenic | 60.0% | |
| AATTGGCAGGGCCGGACCTT+GGG | - | chr4_2:54305635-54305654 | Msa0607490:CDS | 60.0% | |
| GGTTTGCACACCCCAAGGTC+CGG | + | chr4_2:54305649-54305668 | None:intergenic | 60.0% | |
| TGAGCGGTTTGCACACCCCA+AGG | + | chr4_2:54305654-54305673 | None:intergenic | 60.0% | |
| GGGGTGTGCAAACCGCTCAA+TGG | - | chr4_2:54305655-54305674 | Msa0607490:CDS | 60.0% | |
| GGAGGTCCGACTCCATTGAG+CGG | + | chr4_2:54305670-54305689 | None:intergenic | 60.0% | |
| AATGGAGTCGGACCTCCCCA+AGG | - | chr4_2:54305673-54305692 | Msa0607490:CDS | 60.0% | |
| CTGGCAACGCCACTGCATGT+GGG | + | chr4_2:54304912-54304931 | None:intergenic | 60.0% | |
| TTGCCAGGACCCTGGGTCAA+GGG | - | chr4_2:54304925-54304944 | Msa0607490:intron | 60.0% | |
| ! | GAAGGTGCAGTTGAACCCCC+TGG | - | chr4_2:54305505-54305524 | Msa0607490:intron | 60.0% |
| TGAACCCCCTGGCCACTATG+TGG | - | chr4_2:54305516-54305535 | Msa0607490:intron | 60.0% | |
| ACGGAGCCACATAGTGGCCA+GGG | + | chr4_2:54305525-54305544 | None:intergenic | 60.0% | |
| AATTGGCAGGGCCGGACCTT+GGG | - | chr4_2:54305635-54305654 | Msa0607490:CDS | 60.0% | |
| GGTTTGCACACCCCAAGGTC+CGG | + | chr4_2:54305649-54305668 | None:intergenic | 60.0% | |
| TGAGCGGTTTGCACACCCCA+AGG | + | chr4_2:54305654-54305673 | None:intergenic | 60.0% | |
| GGGGTGTGCAAACCGCTCAA+TGG | - | chr4_2:54305655-54305674 | Msa0607490:CDS | 60.0% | |
| GGAGGTCCGACTCCATTGAG+CGG | + | chr4_2:54305670-54305689 | None:intergenic | 60.0% | |
| AATGGAGTCGGACCTCCCCA+AGG | - | chr4_2:54305673-54305692 | Msa0607490:CDS | 60.0% | |
| CCTGGCAACGCCACTGCATG+TGG | + | chr4_2:54304913-54304932 | None:intergenic | 65.0% | |
| CCACATGCAGTGGCGTTGCC+AGG | - | chr4_2:54304910-54304929 | Msa0607490:intron | 65.0% | |
| AGTGGCGTTGCCAGGACCCT+GGG | - | chr4_2:54304918-54304937 | Msa0607490:intron | 65.0% | |
| GTTGCCAGGACCCTGGGTCA+AGG | - | chr4_2:54304924-54304943 | Msa0607490:intron | 65.0% | |
| TGCCAGGACCCTGGGTCAAG+GGG | - | chr4_2:54304926-54304945 | Msa0607490:intron | 65.0% | |
| AACCCCTTGACCCAGGGTCC+TGG | + | chr4_2:54304931-54304950 | None:intergenic | 65.0% | |
| GGAGCCACATAGTGGCCAGG+GGG | + | chr4_2:54305523-54305542 | None:intergenic | 65.0% | |
| CGGAGCCACATAGTGGCCAG+GGG | + | chr4_2:54305524-54305543 | None:intergenic | 65.0% | |
| GACGGAGCCACATAGTGGCC+AGG | + | chr4_2:54305526-54305545 | None:intergenic | 65.0% | |
| CAATTGGCAGGGCCGGACCT+TGG | - | chr4_2:54305634-54305653 | Msa0607490:CDS | 65.0% | |
| ATTGGCAGGGCCGGACCTTG+GGG | - | chr4_2:54305636-54305655 | Msa0607490:CDS | 65.0% | |
| CCTGGCAACGCCACTGCATG+TGG | + | chr4_2:54304913-54304932 | None:intergenic | 65.0% | |
| CCACATGCAGTGGCGTTGCC+AGG | - | chr4_2:54304910-54304929 | Msa0607490:intron | 65.0% | |
| AGTGGCGTTGCCAGGACCCT+GGG | - | chr4_2:54304918-54304937 | Msa0607490:intron | 65.0% | |
| GTTGCCAGGACCCTGGGTCA+AGG | - | chr4_2:54304924-54304943 | Msa0607490:intron | 65.0% | |
| TGCCAGGACCCTGGGTCAAG+GGG | - | chr4_2:54304926-54304945 | Msa0607490:intron | 65.0% | |
| AACCCCTTGACCCAGGGTCC+TGG | + | chr4_2:54304931-54304950 | None:intergenic | 65.0% | |
| GGAGCCACATAGTGGCCAGG+GGG | + | chr4_2:54305523-54305542 | None:intergenic | 65.0% | |
| CGGAGCCACATAGTGGCCAG+GGG | + | chr4_2:54305524-54305543 | None:intergenic | 65.0% | |
| GACGGAGCCACATAGTGGCC+AGG | + | chr4_2:54305526-54305545 | None:intergenic | 65.0% | |
| CAATTGGCAGGGCCGGACCT+TGG | - | chr4_2:54305634-54305653 | Msa0607490:CDS | 65.0% | |
| ATTGGCAGGGCCGGACCTTG+GGG | - | chr4_2:54305636-54305655 | Msa0607490:CDS | 65.0% | |
| CAGTGGCGTTGCCAGGACCC+TGG | - | chr4_2:54304917-54304936 | Msa0607490:intron | 70.0% | |
| CAGTGGCGTTGCCAGGACCC+TGG | - | chr4_2:54304917-54304936 | Msa0607490:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 54304210 | 54305852 | 54304210 | ID=Msa0607490;Name=Msa0607490 |
| chr4_2 | mRNA | 54304210 | 54305852 | 54304210 | ID=Msa0607490-mRNA-1;Parent=Msa0607490;Name=Msa0607490-mRNA-1;_AED=0.65;_eAED=0.65;_QI=0|0|0|0.33|1|1|3|0|118 |
| chr4_2 | exon | 54305609 | 54305852 | 54305609 | ID=Msa0607490-mRNA-1:exon:13648;Parent=Msa0607490-mRNA-1 |
| chr4_2 | exon | 54304368 | 54304418 | 54304368 | ID=Msa0607490-mRNA-1:exon:13647;Parent=Msa0607490-mRNA-1 |
| chr4_2 | exon | 54304210 | 54304271 | 54304210 | ID=Msa0607490-mRNA-1:exon:13646;Parent=Msa0607490-mRNA-1 |
| chr4_2 | CDS | 54305609 | 54305852 | 54305609 | ID=Msa0607490-mRNA-1:cds;Parent=Msa0607490-mRNA-1 |
| chr4_2 | CDS | 54304368 | 54304418 | 54304368 | ID=Msa0607490-mRNA-1:cds;Parent=Msa0607490-mRNA-1 |
| chr4_2 | CDS | 54304210 | 54304271 | 54304210 | ID=Msa0607490-mRNA-1:cds;Parent=Msa0607490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
