Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607660 | XP_003607377.1 | 93.933 | 478 | 27 | 1 | 23 | 500 | 20 | 495 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0607660 | Msa0640800 | 0.800936 | 1.140482e-48 | -8.615850e-47 |
| Msa0607660 | Msa0690570 | 0.929240 | 9.225295e-93 | -8.615850e-47 |
| Msa0607660 | Msa0707260 | 0.806788 | 6.940497e-50 | -8.615850e-47 |
| Msa0607660 | Msa0751720 | 0.815617 | 8.433770e-52 | -8.615850e-47 |
| Msa0607660 | Msa0780820 | 0.851716 | 7.405790e-61 | -8.615850e-47 |
| Msa0607660 | Msa1000780 | 0.806388 | 8.427576e-50 | -8.615850e-47 |
| Msa0607660 | Msa1393560 | 0.811321 | 7.422806e-51 | -8.615850e-47 |
| Msa0170070 | Msa0607660 | 0.803660 | 3.135870e-49 | -8.615850e-47 |
| Msa0373170 | Msa0607660 | 0.816699 | 4.833597e-52 | -8.615850e-47 |
| Msa0421750 | Msa0607660 | 0.816265 | 6.046171e-52 | -8.615850e-47 |
| Msa0433630 | Msa0607660 | 0.808659 | 2.777747e-50 | -8.615850e-47 |
| Msa0467690 | Msa0607660 | 0.816535 | 5.259309e-52 | -8.615850e-47 |
| Msa0288400 | Msa0607660 | 0.818435 | 1.962739e-52 | -8.615850e-47 |
| Msa0342220 | Msa0607660 | 0.811893 | 5.573167e-51 | -8.615850e-47 |
| Msa0514020 | Msa0607660 | 0.818306 | 2.100300e-52 | -8.615850e-47 |
| Msa0521510 | Msa0607660 | 0.813483 | 2.501406e-51 | -8.615850e-47 |
| Msa0572830 | Msa0607660 | 0.821556 | 3.791410e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607660 | MtrunA17_Chr4g0039341 | 93.933 | 478 | 27 | 1 | 23 | 500 | 20 | 495 | 0.0 | 857 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0607660 | AT1G51405.1 | 40.631 | 507 | 242 | 14 | 4 | 483 | 7 | 481 | 3.05e-91 | 287 |
| Msa0607660 | AT1G51405.2 | 44.216 | 389 | 179 | 9 | 4 | 367 | 7 | 382 | 2.75e-81 | 258 |
Find 122 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACCATTGGAACATTTAT+TGG | 0.136920 | 4_2:+54630266 | None:intergenic |
| TGCATGCTTCACGAGATTTC+TGG | 0.188476 | 4_2:-54627918 | Msa0607660:CDS |
| TGTATGCTGGCTTGATATTT+AGG | 0.209712 | 4_2:-54627096 | Msa0607660:three_prime_UTR |
| TAACTTATTTAAGAGTTTAA+TGG | 0.211406 | 4_2:-54627058 | Msa0607660:three_prime_UTR |
| GAAGAATGTTGATAGGGTTT+TGG | 0.243640 | 4_2:-54629442 | Msa0607660:CDS |
| GGAGATTCTGAGAAGGAAAA+TGG | 0.295996 | 4_2:-54628904 | Msa0607660:CDS |
| GACCTAGCATCTGCTGCATT+TGG | 0.325831 | 4_2:+54627965 | None:intergenic |
| TTACATGTCCTAACATTATC+AGG | 0.339375 | 4_2:-54627248 | Msa0607660:three_prime_UTR |
| ACCTAGCATCTGCTGCATTT+GGG | 0.343408 | 4_2:+54627966 | None:intergenic |
| CTTGATATTTAGGATGTGTT+TGG | 0.350461 | 4_2:-54627086 | Msa0607660:three_prime_UTR |
| CTTCTTCGCCTGATAATGTT+AGG | 0.350503 | 4_2:+54627240 | None:intergenic |
| CGAGGAAAGTGTAGGATTCT+TGG | 0.351068 | 4_2:+54630395 | None:intergenic |
| AGGTGGATGGTGGTGCCATT+TGG | 0.357482 | 4_2:+54630430 | None:intergenic |
| GTACTATGCTTAGAGAAATA+AGG | 0.360344 | 4_2:-54627152 | Msa0607660:three_prime_UTR |
| GTGAAGGGAAGAATGTTGAT+AGG | 0.361695 | 4_2:-54629449 | Msa0607660:CDS |
| TCTTGGAATGGCATTCGCTT+TGG | 0.384718 | 4_2:+54627403 | None:intergenic |
| TACTTGAAATTCAACTCTCT+TGG | 0.398229 | 4_2:+54628791 | None:intergenic |
| AGAGATAGCAGTTAAGAAGT+TGG | 0.398549 | 4_2:-54630111 | Msa0607660:CDS |
| GAATGAACAAAATGTAGTTA+AGG | 0.398858 | 4_2:-54627596 | Msa0607660:CDS |
| GGGGATATTATTAGAGAGAA+TGG | 0.402963 | 4_2:-54628868 | Msa0607660:CDS |
| TTATCTTCCTTTGAGAATGC+TGG | 0.406246 | 4_2:+54627129 | None:intergenic |
| ATTCTTGGAGTTGGAGGAGG+AGG | 0.414343 | 4_2:+54630410 | None:intergenic |
| CTTGGAGTTGGAGGAGGAGG+TGG | 0.418774 | 4_2:+54630413 | None:intergenic |
| AACATGTTAGGGACATTGTT+TGG | 0.423072 | 4_2:-54630317 | Msa0607660:CDS |
| AATGAACAAAATGTAGTTAA+GGG | 0.423538 | 4_2:-54627595 | Msa0607660:CDS |
| CTCCGGGGAGCGGAGGAAGA+TGG | 0.425178 | 4_2:+54630353 | None:intergenic |
| GTTACTGTTGAGGTCCCTCC+GGG | 0.427432 | 4_2:+54630337 | None:intergenic |
| GACCTCAACAGTAACATGTT+AGG | 0.429213 | 4_2:-54630329 | Msa0607660:CDS |
| TGTAGGATTCTTGGAGTTGG+AGG | 0.434712 | 4_2:+54630404 | None:intergenic |
| GTTGTTATTGAGAGAGGTGA+TGG | 0.436814 | 4_2:-54630212 | Msa0607660:CDS |
| TCTCAGCATTTGAAGAAAGA+TGG | 0.438378 | 4_2:+54627314 | None:intergenic |
| TGTGAAGTGAACCTGTGTTC+AGG | 0.438498 | 4_2:-54628051 | Msa0607660:CDS |
| ATCTTCCTCCGCTCCCCGGA+GGG | 0.438821 | 4_2:-54630351 | Msa0607660:CDS |
| TGAATTTCAAGTACCTCATC+AGG | 0.449289 | 4_2:-54628781 | Msa0607660:intron |
| TTTGAGGGAGTTTGAAGAGA+TGG | 0.450041 | 4_2:-54629259 | Msa0607660:CDS |
| AGGATTCTTGGAGTTGGAGG+AGG | 0.459443 | 4_2:+54630407 | None:intergenic |
| ACATTTATTGGAGCTTCAGC+AGG | 0.459760 | 4_2:+54630278 | None:intergenic |
| ATGAGTTGTTTCCAATGTCT+TGG | 0.460604 | 4_2:+54627386 | None:intergenic |
| GAGAGGTGATGGATCGTTGT+TGG | 0.460974 | 4_2:-54630201 | Msa0607660:CDS |
| TCCGGGGAGCGGAGGAAGAT+GGG | 0.463847 | 4_2:+54630354 | None:intergenic |
| GACTATTGTAAGAAGAATAG+TGG | 0.465343 | 4_2:-54628019 | Msa0607660:CDS |
| TTGGAGGAGGAGGTGGATGG+TGG | 0.470809 | 4_2:+54630420 | None:intergenic |
| TCCCATCTTCCTCCGCTCCC+CGG | 0.474058 | 4_2:-54630355 | Msa0607660:CDS |
| TTCAAAATCAACACAGAGCA+TGG | 0.479121 | 4_2:+54627627 | None:intergenic |
| CATCAGAAGGGATATATTTG+AGG | 0.484387 | 4_2:-54629275 | Msa0607660:CDS |
| GTTGAGGTCCCTCCGGGGAG+CGG | 0.489811 | 4_2:+54630343 | None:intergenic |
| AAGAAAGATGGCAATGCAAA+GGG | 0.497731 | 4_2:+54627326 | None:intergenic |
| ACCTCAACAGTAACATGTTA+GGG | 0.497942 | 4_2:-54630328 | Msa0607660:CDS |
| AAAATGGAGGGATTGTCAAA+GGG | 0.498376 | 4_2:-54628888 | Msa0607660:CDS |
| GAAATGTCCATCGGTTCCAT+TGG | 0.499255 | 4_2:-54627569 | Msa0607660:CDS |
| GATAATAGTGTTCTTGCAAG+TGG | 0.499315 | 4_2:-54629198 | Msa0607660:CDS |
| CGTTGTTGGAGGAAGAGAAG+TGG | 0.501323 | 4_2:-54630187 | Msa0607660:CDS |
| AGGTGATGGATCGTTGTTGG+AGG | 0.501863 | 4_2:-54630198 | Msa0607660:CDS |
| AAGTGTAGGATTCTTGGAGT+TGG | 0.503126 | 4_2:+54630401 | None:intergenic |
| GGAAAGGACTCGTTCAAAGA+TGG | 0.505693 | 4_2:-54630090 | Msa0607660:CDS |
| TGAAGGGAAGAATGTTGATA+GGG | 0.506304 | 4_2:-54629448 | Msa0607660:CDS |
| CTAACATTATCAGGCGAAGA+AGG | 0.507088 | 4_2:-54627239 | Msa0607660:three_prime_UTR |
| TGTTACTGTTGAGGTCCCTC+CGG | 0.508567 | 4_2:+54630336 | None:intergenic |
| CTTTCACACAGGTGCAAGAG+TGG | 0.511085 | 4_2:-54627705 | Msa0607660:intron |
| GGATCGTTGTGAAGAGAGGA+GGG | 0.513458 | 4_2:-54630240 | Msa0607660:CDS |
| GAGAGAGTTGTTATTGAGAG+AGG | 0.525273 | 4_2:-54630218 | Msa0607660:CDS |
| GAGTTGGAGGAGGAGGTGGA+TGG | 0.529094 | 4_2:+54630417 | None:intergenic |
| AGGTCAGGTGAGGGAAGAGA+TGG | 0.530355 | 4_2:-54627947 | Msa0607660:CDS |
| CGAATGCCATTCCAAGACAT+TGG | 0.530667 | 4_2:-54627397 | Msa0607660:CDS |
| AAGTTTCGGTTCTGCAGAGA+CGG | 0.530765 | 4_2:-54629317 | Msa0607660:CDS |
| GAAAATGGAGGGATTGTCAA+AGG | 0.533587 | 4_2:-54628889 | Msa0607660:CDS |
| AACTCTTTCTGTGTATCCAA+TGG | 0.534032 | 4_2:+54627553 | None:intergenic |
| TATCATCAAGAAAATCCAAA+TGG | 0.534495 | 4_2:-54630445 | Msa0607660:CDS |
| AAATGTTCCAATGGTGATGT+TGG | 0.536540 | 4_2:-54630261 | Msa0607660:CDS |
| CAACGATCCAACATCACCAT+TGG | 0.537506 | 4_2:+54630254 | None:intergenic |
| GAGGTCCCTCCGGGGAGCGG+AGG | 0.537807 | 4_2:+54630346 | None:intergenic |
| GATATTATTAGAGAGAATGG+AGG | 0.539583 | 4_2:-54628865 | Msa0607660:CDS |
| CAGAGACGGCTCGAGAAGAT+CGG | 0.543380 | 4_2:-54629303 | Msa0607660:CDS |
| ATCAGAAGGGATATATTTGA+GGG | 0.543921 | 4_2:-54629274 | Msa0607660:CDS |
| TGGATCGTTGTGAAGAGAGG+AGG | 0.548525 | 4_2:-54630241 | Msa0607660:CDS |
| GGAAGAATAAAGATTTGTGA+AGG | 0.550668 | 4_2:-54629465 | Msa0607660:CDS |
| AAAACACATGCTGCTAGAGG+TGG | 0.551959 | 4_2:-54627436 | Msa0607660:CDS |
| AATGCAGCAGATGCTAGGTC+AGG | 0.555822 | 4_2:-54627962 | Msa0607660:CDS |
| TAAAAGTGTATTGTGTATGC+TGG | 0.558195 | 4_2:-54627109 | Msa0607660:three_prime_UTR |
| GAAGAAAGATGGCAATGCAA+AGG | 0.558474 | 4_2:+54627325 | None:intergenic |
| ACTTTCCTCGCCGTCCTCGT+CGG | 0.558544 | 4_2:-54630382 | Msa0607660:CDS |
| CTCAAATATATCCCTTCTGA+TGG | 0.560000 | 4_2:+54629276 | None:intergenic |
| AAATGGAGGGATTGTCAAAG+GGG | 0.562848 | 4_2:-54628887 | Msa0607660:CDS |
| TTGTTTCCAATGTCTTGGAA+TGG | 0.569662 | 4_2:+54627391 | None:intergenic |
| TAGCAGTTAAGAAGTTGGAA+AGG | 0.569875 | 4_2:-54630106 | Msa0607660:CDS |
| AGCTCCAATAAATGTTCCAA+TGG | 0.574520 | 4_2:-54630270 | Msa0607660:CDS |
| AATAGTAGTTTGCAGCTCAA+AGG | 0.575630 | 4_2:-54627521 | Msa0607660:CDS |
| TCCCAAATGCAGCAGATGCT+AGG | 0.580499 | 4_2:-54627967 | Msa0607660:CDS |
| TCCCTAACATGTTACTGTTG+AGG | 0.580614 | 4_2:+54630327 | None:intergenic |
| CATCTTCCTCCGCTCCCCGG+AGG | 0.583736 | 4_2:-54630352 | Msa0607660:CDS |
| ATGGGACTCTCCGACGAGGA+CGG | 0.584150 | 4_2:+54630372 | None:intergenic |
| AAGATCGGAGGACCATCAGA+AGG | 0.585962 | 4_2:-54629288 | Msa0607660:CDS |
| TGTGTATCCAATGGAACCGA+TGG | 0.591976 | 4_2:+54627562 | None:intergenic |
| GATTCTGAGAAGGAAAATGG+AGG | 0.593121 | 4_2:-54628901 | Msa0607660:CDS |
| ATGAACAAAATGTAGTTAAG+GGG | 0.598650 | 4_2:-54627594 | Msa0607660:CDS |
| ATTCTGAGAAGGAAAATGGA+GGG | 0.600555 | 4_2:-54628900 | Msa0607660:CDS |
| TGTTGGATCGTTGTGAAGAG+AGG | 0.601931 | 4_2:-54630244 | Msa0607660:CDS |
| GAAGAATAAAGATTTGTGAA+GGG | 0.602622 | 4_2:-54629464 | Msa0607660:CDS |
| GATTTGAGAATCAGAATGCA+AGG | 0.608352 | 4_2:+54627885 | None:intergenic |
| TCTTGCAATGTCCTGAACAC+AGG | 0.609133 | 4_2:+54628040 | None:intergenic |
| GCAGATGCTAGGTCAGGTGA+GGG | 0.610800 | 4_2:-54627956 | Msa0607660:CDS |
| AGCAGATGCTAGGTCAGGTG+AGG | 0.613666 | 4_2:-54627957 | Msa0607660:CDS |
| AATAAGGCCAGCATTCTCAA+AGG | 0.616210 | 4_2:-54627136 | Msa0607660:three_prime_UTR |
| AATCAAGAATGTACCTGATG+AGG | 0.617995 | 4_2:+54628768 | None:intergenic |
| TGCAGGTGGAGATTCTGAGA+AGG | 0.623768 | 4_2:-54628911 | Msa0607660:intron |
| TGAAGCAGAACTACTAGCAG+TGG | 0.627070 | 4_2:+54628818 | None:intergenic |
| AAGTGAAACTAACAGAAACA+AGG | 0.628076 | 4_2:+54630039 | None:intergenic |
| AAACACATGCTGCTAGAGGT+GGG | 0.628680 | 4_2:-54627435 | Msa0607660:CDS |
| TGAGTGTAACTTGTTGAGGA+TGG | 0.633977 | 4_2:-54630138 | Msa0607660:CDS |
| TTGTTGACGAGGCAGCAGAA+TGG | 0.635385 | 4_2:-54627361 | Msa0607660:CDS |
| GAGCTGAGTGTAACTTGTTG+AGG | 0.636916 | 4_2:-54630142 | Msa0607660:CDS |
| GAGGACGGCGAGGAAAGTGT+AGG | 0.654317 | 4_2:+54630387 | None:intergenic |
| TAAGGGGACGAAATGTCCAT+CGG | 0.657673 | 4_2:-54627578 | Msa0607660:CDS |
| AGATCGGAGGACCATCAGAA+GGG | 0.658949 | 4_2:-54629287 | Msa0607660:CDS |
| ACTCTCCGACGAGGACGGCG+AGG | 0.662623 | 4_2:+54630377 | None:intergenic |
| AGACGGCTCGAGAAGATCGG+AGG | 0.667780 | 4_2:-54629300 | Msa0607660:CDS |
| AGTGAAACTAACAGAAACAA+GGG | 0.667912 | 4_2:+54630040 | None:intergenic |
| ACAACTCATCATTGTTGACG+AGG | 0.676815 | 4_2:-54627372 | Msa0607660:CDS |
| AGAGAAGTGGAAGTTTCAAG+CGG | 0.681462 | 4_2:-54630174 | Msa0607660:CDS |
| GAAGATGGGACTCTCCGACG+AGG | 0.714622 | 4_2:+54630368 | None:intergenic |
| TTAGAGTTGAGACAGAACAA+TGG | 0.748998 | 4_2:-54627990 | Msa0607660:CDS |
| TTACTGTTGAGGTCCCTCCG+GGG | 0.752755 | 4_2:+54630338 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATAACTTATAAACA+TGG | + | chr4_2:54628426-54628445 | None:intergenic | 10.0% |
| !! | TTTGAAAAAGAAAAATAAAG+AGG | + | chr4_2:54627504-54627523 | None:intergenic | 15.0% |
| !! | TTATTAAAGTCGTATTTAAT+TGG | + | chr4_2:54628842-54628861 | None:intergenic | 15.0% |
| !! | TAACTTATTTAAGAGTTTAA+TGG | - | chr4_2:54630458-54630477 | Msa0607660:CDS | 15.0% |
| !!! | TCAAACTTTCATTTTTTGTT+TGG | - | chr4_2:54627519-54627538 | Msa0607660:CDS | 20.0% |
| !!! | CAAACTTTCATTTTTTGTTT+GGG | - | chr4_2:54627520-54627539 | Msa0607660:CDS | 20.0% |
| !!! | TCTAGTTTTAAACTTATTTC+TGG | + | chr4_2:54627796-54627815 | None:intergenic | 20.0% |
| !! | TTAAAACTAGACATATCATA+AGG | - | chr4_2:54627805-54627824 | Msa0607660:intron | 20.0% |
| !!! | AAATTTTGACAAACAAGTTT+CGG | - | chr4_2:54628185-54628204 | Msa0607660:intron | 20.0% |
| !!! | ATAAAAATTTCTAAAGATGG+TGG | + | chr4_2:54628371-54628390 | None:intergenic | 20.0% |
| !!! | CAGATAAAAATTTCTAAAGA+TGG | + | chr4_2:54628374-54628393 | None:intergenic | 20.0% |
| !!! | AATAGCAAAAAGTATTTGTA+TGG | + | chr4_2:54628542-54628561 | None:intergenic | 20.0% |
| !!! | CATGATTTTTTATTAATGGT+GGG | + | chr4_2:54628866-54628885 | None:intergenic | 20.0% |
| !!! | GTCAATTGTTTCTTATAATA+AGG | + | chr4_2:54629078-54629097 | None:intergenic | 20.0% |
| !!! | TAAGAAACAATTGACTTTTT+TGG | - | chr4_2:54629083-54629102 | Msa0607660:intron | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | + | chr4_2:54629172-54629191 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | - | chr4_2:54629177-54629196 | Msa0607660:intron | 20.0% |
| !!! | TTTTATTTGCTATACATTGA+CGG | + | chr4_2:54629325-54629344 | None:intergenic | 20.0% |
| !!! | TTGAATTCGTTCTTTTAATT+CGG | + | chr4_2:54629398-54629417 | None:intergenic | 20.0% |
| !! | AATGAACAAAATGTAGTTAA+GGG | - | chr4_2:54629921-54629940 | Msa0607660:intron | 20.0% |
| ! | TATCATCAAGAAAATCCAAA+TGG | - | chr4_2:54627071-54627090 | Msa0607660:three_prime_UTR | 25.0% |
| !!! | GTTTTAAACTTATTTCTGGT+TGG | + | chr4_2:54627792-54627811 | None:intergenic | 25.0% |
| ! | TAAGTACTTATGAGATTGTT+TGG | + | chr4_2:54627848-54627867 | None:intergenic | 25.0% |
| !!! | TATGCATGTTTTTAACATGA+TGG | - | chr4_2:54627983-54628002 | Msa0607660:CDS | 25.0% |
| !!! | ATGTTTTTAACATGATGGTT+TGG | - | chr4_2:54627988-54628007 | Msa0607660:CDS | 25.0% |
| !! | TTGATCTTTAACTTAGAAAG+TGG | - | chr4_2:54628021-54628040 | Msa0607660:CDS | 25.0% |
| ! | GAAGAATAAAGATTTGTGAA+GGG | - | chr4_2:54628052-54628071 | Msa0607660:CDS | 25.0% |
| !! | ATCAACAGTTAATGATTTTG+AGG | - | chr4_2:54628146-54628165 | Msa0607660:intron | 25.0% |
| !! | TCAACAGTTAATGATTTTGA+GGG | - | chr4_2:54628147-54628166 | Msa0607660:intron | 25.0% |
| ! | ATCTAAATTACATAGCTCAT+TGG | + | chr4_2:54628467-54628486 | None:intergenic | 25.0% |
| !!! | TATTTTGTCCTTTTTAGTGT+TGG | - | chr4_2:54628558-54628577 | Msa0607660:intron | 25.0% |
| !! | TGAATTTTATTGAACTTTGC+AGG | - | chr4_2:54628588-54628607 | Msa0607660:intron | 25.0% |
| ! | AATAATCTACAATCAACTAG+TGG | + | chr4_2:54628780-54628799 | None:intergenic | 25.0% |
| !!! | CCATGATTTTTTATTAATGG+TGG | + | chr4_2:54628867-54628886 | None:intergenic | 25.0% |
| ! | CCACCATTAATAAAAAATCA+TGG | - | chr4_2:54628864-54628883 | Msa0607660:CDS | 25.0% |
| !!! | CGTCCATGATTTTTTATTAA+TGG | + | chr4_2:54628870-54628889 | None:intergenic | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | + | chr4_2:54629073-54629092 | None:intergenic | 25.0% |
| !! | CTTTTTCTTATAATAAGGAC+CGG | - | chr4_2:54629182-54629201 | Msa0607660:intron | 25.0% |
| !! | TACAAATGATGATTTGTGAT+TGG | + | chr4_2:54629231-54629250 | None:intergenic | 25.0% |
| !! | CATCATTTGTATGACTTTTA+AGG | - | chr4_2:54629240-54629259 | Msa0607660:CDS | 25.0% |
| ! | TGTATAGCAAATAAAATTGC+AGG | - | chr4_2:54629329-54629348 | Msa0607660:CDS | 25.0% |
| !! | TTACATCATTTTGTAGAGAT+TGG | + | chr4_2:54629656-54629675 | None:intergenic | 25.0% |
| ! | CAACATATAATCCTTAGAAA+TGG | + | chr4_2:54629744-54629763 | None:intergenic | 25.0% |
| !! | CATTTCTAAGGATTATATGT+TGG | - | chr4_2:54629742-54629761 | Msa0607660:intron | 25.0% |
| ! | AATACAAAGTTAATGCAAAC+AGG | + | chr4_2:54629789-54629808 | None:intergenic | 25.0% |
| !! | TAACTACATTTTGTTCATTC+TGG | + | chr4_2:54629920-54629939 | None:intergenic | 25.0% |
| ! | GAATGAACAAAATGTAGTTA+AGG | - | chr4_2:54629920-54629939 | Msa0607660:intron | 25.0% |
| ! | ATGAACAAAATGTAGTTAAG+GGG | - | chr4_2:54629922-54629941 | Msa0607660:intron | 25.0% |
| !!! | TGTGTTTCATGTTTTAAGAT+TGG | - | chr4_2:54630314-54630333 | Msa0607660:CDS | 25.0% |
| !! | TTTTCTTGATGATAATGCTG+TGG | + | chr4_2:54627065-54627084 | None:intergenic | 30.0% |
| ATCACCATTGGAACATTTAT+TGG | + | chr4_2:54627253-54627272 | None:intergenic | 30.0% | |
| AGTGAAACTAACAGAAACAA+GGG | + | chr4_2:54627479-54627498 | None:intergenic | 30.0% | |
| AAGTGAAACTAACAGAAACA+AGG | + | chr4_2:54627480-54627499 | None:intergenic | 30.0% | |
| GGAAGAATAAAGATTTGTGA+AGG | - | chr4_2:54628051-54628070 | Msa0607660:CDS | 30.0% | |
| ATCAGAAGGGATATATTTGA+GGG | - | chr4_2:54628242-54628261 | Msa0607660:intron | 30.0% | |
| AAGTATTTGTATGGCATGTT+TGG | + | chr4_2:54628533-54628552 | None:intergenic | 30.0% | |
| ATGAGAAACCAACACTAAAA+AGG | + | chr4_2:54628569-54628588 | None:intergenic | 30.0% | |
| ! | ATTTTATTGAACTTTGCAGG+TGG | - | chr4_2:54628591-54628610 | Msa0607660:intron | 30.0% |
| GATATTATTAGAGAGAATGG+AGG | - | chr4_2:54628651-54628670 | Msa0607660:intron | 30.0% | |
| TACTTGAAATTCAACTCTCT+TGG | + | chr4_2:54628728-54628747 | None:intergenic | 30.0% | |
| TAGCAAATAAAATTGCAGGA+TGG | - | chr4_2:54629333-54629352 | Msa0607660:CDS | 30.0% | |
| ! | ATTGTGTTTTCATGTGAACA+AGG | + | chr4_2:54629363-54629382 | None:intergenic | 30.0% |
| ACATGAAAACACAATCTTCT+TGG | - | chr4_2:54629368-54629387 | Msa0607660:CDS | 30.0% | |
| GACTATTGTAAGAAGAATAG+TGG | - | chr4_2:54629497-54629516 | Msa0607660:intron | 30.0% | |
| GTTAAATTCAACAACCTCTT+AGG | - | chr4_2:54629689-54629708 | Msa0607660:intron | 30.0% | |
| TGAAACACTAGAAGTAAACA+CGG | + | chr4_2:54629716-54629735 | None:intergenic | 30.0% | |
| GTTTCATGTTTCCATTTCTA+AGG | - | chr4_2:54629730-54629749 | Msa0607660:intron | 30.0% | |
| ATGTTGGAGTCATTTATTTC+TGG | - | chr4_2:54629758-54629777 | Msa0607660:intron | 30.0% | |
| ! | CTTTGTATTTTCTTTCACAC+AGG | - | chr4_2:54629800-54629819 | Msa0607660:intron | 30.0% |
| AGAAAACAAAAAACACAGTG+AGG | - | chr4_2:54630037-54630056 | Msa0607660:intron | 30.0% | |
| ! | AAAAACACAGTGAGGTTTTA+AGG | - | chr4_2:54630045-54630064 | Msa0607660:intron | 30.0% |
| TTACATGTCCTAACATTATC+AGG | - | chr4_2:54630268-54630287 | Msa0607660:CDS | 30.0% | |
| !!! | GTTTCATGTTTTAAGATTGG+TGG | - | chr4_2:54630317-54630336 | Msa0607660:CDS | 30.0% |
| !!! | ATGTTTTAAGATTGGTGGTT+TGG | - | chr4_2:54630322-54630341 | Msa0607660:CDS | 30.0% |
| !!! | TGTTTTAAGATTGGTGGTTT+GGG | - | chr4_2:54630323-54630342 | Msa0607660:CDS | 30.0% |
| GTACTATGCTTAGAGAAATA+AGG | - | chr4_2:54630364-54630383 | Msa0607660:CDS | 30.0% | |
| ! | TAAAAGTGTATTGTGTATGC+TGG | - | chr4_2:54630407-54630426 | Msa0607660:CDS | 30.0% |
| ! | CTTGATATTTAGGATGTGTT+TGG | - | chr4_2:54630430-54630449 | Msa0607660:CDS | 30.0% |
| ACCTCAACAGTAACATGTTA+GGG | - | chr4_2:54627188-54627207 | Msa0607660:three_prime_UTR | 35.0% | |
| AACATGTTAGGGACATTGTT+TGG | - | chr4_2:54627199-54627218 | Msa0607660:three_prime_UTR | 35.0% | |
| AGCTCCAATAAATGTTCCAA+TGG | - | chr4_2:54627246-54627265 | Msa0607660:three_prime_UTR | 35.0% | |
| ! | AAATGTTCCAATGGTGATGT+TGG | - | chr4_2:54627255-54627274 | Msa0607660:three_prime_UTR | 35.0% |
| AGAGATAGCAGTTAAGAAGT+TGG | - | chr4_2:54627405-54627424 | Msa0607660:CDS | 35.0% | |
| TAGCAGTTAAGAAGTTGGAA+AGG | - | chr4_2:54627410-54627429 | Msa0607660:CDS | 35.0% | |
| !! | AAACTTATTTCTGGTTGGAC+CGG | + | chr4_2:54627787-54627806 | None:intergenic | 35.0% |
| CAGCTACTTGAAACTGAATT+AGG | + | chr4_2:54627931-54627950 | None:intergenic | 35.0% | |
| ! | CTAATTCAGTTTCAAGTAGC+TGG | - | chr4_2:54627929-54627948 | Msa0607660:CDS | 35.0% |
| TAACTTAGAAAGTGGAATGC+AGG | - | chr4_2:54628029-54628048 | Msa0607660:CDS | 35.0% | |
| AACTTAGAAAGTGGAATGCA+GGG | - | chr4_2:54628030-54628049 | Msa0607660:CDS | 35.0% | |
| TGAAGGGAAGAATGTTGATA+GGG | - | chr4_2:54628068-54628087 | Msa0607660:intron | 35.0% | |
| !! | GAAGAATGTTGATAGGGTTT+TGG | - | chr4_2:54628074-54628093 | Msa0607660:intron | 35.0% |
| !! | CAGTTAATGATTTTGAGGGA+AGG | - | chr4_2:54628151-54628170 | Msa0607660:intron | 35.0% |
| !! | TTAATGATTTTGAGGGAAGG+AGG | - | chr4_2:54628154-54628173 | Msa0607660:intron | 35.0% |
| CTCAAATATATCCCTTCTGA+TGG | + | chr4_2:54628243-54628262 | None:intergenic | 35.0% | |
| CATCAGAAGGGATATATTTG+AGG | - | chr4_2:54628241-54628260 | Msa0607660:intron | 35.0% | |
| GATAATAGTGTTCTTGCAAG+TGG | - | chr4_2:54628318-54628337 | Msa0607660:intron | 35.0% | |
| ! | ATTCTGAGAAGGAAAATGGA+GGG | - | chr4_2:54628616-54628635 | Msa0607660:intron | 35.0% |
| AAAATGGAGGGATTGTCAAA+GGG | - | chr4_2:54628628-54628647 | Msa0607660:intron | 35.0% | |
| GGGGATATTATTAGAGAGAA+TGG | - | chr4_2:54628648-54628667 | Msa0607660:intron | 35.0% | |
| ! | TGAATTTCAAGTACCTCATC+AGG | - | chr4_2:54628735-54628754 | Msa0607660:intron | 35.0% |
| AATCAAGAATGTACCTGATG+AGG | + | chr4_2:54628751-54628770 | None:intergenic | 35.0% | |
| ! | GTTGTTGTTGTCATCATCTT+GGG | + | chr4_2:54628980-54628999 | None:intergenic | 35.0% |
| ! | TGTTGTTGTTGTCATCATCT+TGG | + | chr4_2:54628981-54629000 | None:intergenic | 35.0% |
| ! | TCTTTTCTTAGGCTCATCTT+GGG | + | chr4_2:54629040-54629059 | None:intergenic | 35.0% |
| ! | TTCTTTTCTTAGGCTCATCT+TGG | + | chr4_2:54629041-54629060 | None:intergenic | 35.0% |
| !!! | GAGGGAGTATTTCTTTTCTT+AGG | + | chr4_2:54629051-54629070 | None:intergenic | 35.0% |
| AAGAAAAGAAATACTCCCTC+CGG | - | chr4_2:54629051-54629070 | Msa0607660:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | chr4_2:54629186-54629205 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr4_2:54629185-54629204 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | - | chr4_2:54629185-54629204 | Msa0607660:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | - | chr4_2:54629186-54629205 | Msa0607660:intron | 35.0% | |
| ! | TGTGTATTGACAAATCATGC+AGG | - | chr4_2:54629431-54629450 | Msa0607660:CDS | 35.0% |
| TTAGAGTTGAGACAGAACAA+TGG | - | chr4_2:54629526-54629545 | Msa0607660:intron | 35.0% | |
| GATTTGAGAATCAGAATGCA+AGG | + | chr4_2:54629634-54629653 | None:intergenic | 35.0% | |
| TTCAAAATCAACACAGAGCA+TGG | + | chr4_2:54629892-54629911 | None:intergenic | 35.0% | |
| AACTCTTTCTGTGTATCCAA+TGG | + | chr4_2:54629966-54629985 | None:intergenic | 35.0% | |
| ! | AATAGTAGTTTGCAGCTCAA+AGG | - | chr4_2:54629995-54630014 | Msa0607660:intron | 35.0% |
| TTGTTTCCAATGTCTTGGAA+TGG | + | chr4_2:54630128-54630147 | None:intergenic | 35.0% | |
| ! | ATGAGTTGTTTCCAATGTCT+TGG | + | chr4_2:54630133-54630152 | None:intergenic | 35.0% |
| AAGAAAGATGGCAATGCAAA+GGG | + | chr4_2:54630193-54630212 | None:intergenic | 35.0% | |
| TCTCAGCATTTGAAGAAAGA+TGG | + | chr4_2:54630205-54630224 | None:intergenic | 35.0% | |
| ! | TTATCTTCCTTTGAGAATGC+TGG | + | chr4_2:54630390-54630409 | None:intergenic | 35.0% |
| !! | TGTATGCTGGCTTGATATTT+AGG | - | chr4_2:54630420-54630439 | Msa0607660:CDS | 35.0% |
| AAGTGTAGGATTCTTGGAGT+TGG | + | chr4_2:54627118-54627137 | None:intergenic | 40.0% | |
| GACCTCAACAGTAACATGTT+AGG | - | chr4_2:54627187-54627206 | Msa0607660:three_prime_UTR | 40.0% | |
| TCCCTAACATGTTACTGTTG+AGG | + | chr4_2:54627192-54627211 | None:intergenic | 40.0% | |
| ACATTTATTGGAGCTTCAGC+AGG | + | chr4_2:54627241-54627260 | None:intergenic | 40.0% | |
| ! | GAGAGAGTTGTTATTGAGAG+AGG | - | chr4_2:54627298-54627317 | Msa0607660:exon | 40.0% |
| ! | GTTGTTATTGAGAGAGGTGA+TGG | - | chr4_2:54627304-54627323 | Msa0607660:CDS | 40.0% |
| AGAGAAGTGGAAGTTTCAAG+CGG | - | chr4_2:54627342-54627361 | Msa0607660:CDS | 40.0% | |
| !! | TGAGTGTAACTTGTTGAGGA+TGG | - | chr4_2:54627378-54627397 | Msa0607660:CDS | 40.0% |
| AAGCTATTCTTGAGAGCTTG+TGG | - | chr4_2:54627659-54627678 | Msa0607660:CDS | 40.0% | |
| GTGCACAAGCTCAAATATAC+CGG | - | chr4_2:54627765-54627784 | Msa0607660:intron | 40.0% | |
| GTAGCTGATGTATCATGAGT+TGG | - | chr4_2:54627905-54627924 | Msa0607660:CDS | 40.0% | |
| GTGAAGGGAAGAATGTTGAT+AGG | - | chr4_2:54628067-54628086 | Msa0607660:intron | 40.0% | |
| TTTGAGGGAGTTTGAAGAGA+TGG | - | chr4_2:54628257-54628276 | Msa0607660:intron | 40.0% | |
| ! | GGAGATTCTGAGAAGGAAAA+TGG | - | chr4_2:54628612-54628631 | Msa0607660:intron | 40.0% |
| ! | GATTCTGAGAAGGAAAATGG+AGG | - | chr4_2:54628615-54628634 | Msa0607660:intron | 40.0% |
| GAAAATGGAGGGATTGTCAA+AGG | - | chr4_2:54628627-54628646 | Msa0607660:intron | 40.0% | |
| AAATGGAGGGATTGTCAAAG+GGG | - | chr4_2:54628629-54628648 | Msa0607660:intron | 40.0% | |
| ATCTTGGGTCATGACATTGT+CGG | + | chr4_2:54628965-54628984 | None:intergenic | 40.0% | |
| !! | TCAAGCCTTATTCCACTATG+TGG | - | chr4_2:54629002-54629021 | Msa0607660:intron | 40.0% |
| !! | CAAGCCTTATTCCACTATGT+GGG | - | chr4_2:54629003-54629022 | Msa0607660:intron | 40.0% |
| !! | AAGCCTTATTCCACTATGTG+GGG | - | chr4_2:54629004-54629023 | Msa0607660:intron | 40.0% |
| !!! | CACAGTGAGGTTTTAAGGAA+CGG | - | chr4_2:54630050-54630069 | Msa0607660:intron | 40.0% |
| AGAAAAACACATGCTGCTAG+AGG | - | chr4_2:54630077-54630096 | Msa0607660:CDS | 40.0% | |
| ACAACTCATCATTGTTGACG+AGG | - | chr4_2:54630144-54630163 | Msa0607660:CDS | 40.0% | |
| GAAGAAAGATGGCAATGCAA+AGG | + | chr4_2:54630194-54630213 | None:intergenic | 40.0% | |
| ! | CTTCTTCGCCTGATAATGTT+AGG | + | chr4_2:54630279-54630298 | None:intergenic | 40.0% |
| CTAACATTATCAGGCGAAGA+AGG | - | chr4_2:54630277-54630296 | Msa0607660:CDS | 40.0% | |
| AATAAGGCCAGCATTCTCAA+AGG | - | chr4_2:54630380-54630399 | Msa0607660:CDS | 40.0% | |
| TGTAGGATTCTTGGAGTTGG+AGG | + | chr4_2:54627115-54627134 | None:intergenic | 45.0% | |
| ! | CGAGGAAAGTGTAGGATTCT+TGG | + | chr4_2:54627124-54627143 | None:intergenic | 45.0% |
| CAACGATCCAACATCACCAT+TGG | + | chr4_2:54627265-54627284 | None:intergenic | 45.0% | |
| TGTTGGATCGTTGTGAAGAG+AGG | - | chr4_2:54627272-54627291 | Msa0607660:three_prime_UTR | 45.0% | |
| !! | GAGCTGAGTGTAACTTGTTG+AGG | - | chr4_2:54627374-54627393 | Msa0607660:CDS | 45.0% |
| GGAAAGGACTCGTTCAAAGA+TGG | - | chr4_2:54627426-54627445 | Msa0607660:CDS | 45.0% | |
| !! | AAGCACTGGTGAGACTGTTT+GGG | + | chr4_2:54627739-54627758 | None:intergenic | 45.0% |
| !! | TAAGCACTGGTGAGACTGTT+TGG | + | chr4_2:54627740-54627759 | None:intergenic | 45.0% |
| ! | TTGTGCACTGACATAAGCAC+TGG | + | chr4_2:54627753-54627772 | None:intergenic | 45.0% |
| AAGTTTCGGTTCTGCAGAGA+CGG | - | chr4_2:54628199-54628218 | Msa0607660:intron | 45.0% | |
| TGAAGCAGAACTACTAGCAG+TGG | + | chr4_2:54628701-54628720 | None:intergenic | 45.0% | |
| CTTATTCCACTATGTGGGGT+CGG | - | chr4_2:54629008-54629027 | Msa0607660:intron | 45.0% | |
| CTGTAATGTACTACTCCCTC+CGG | + | chr4_2:54629204-54629223 | None:intergenic | 45.0% | |
| TGTGAAGTGAACCTGTGTTC+AGG | - | chr4_2:54629465-54629484 | Msa0607660:CDS | 45.0% | |
| TCTTGCAATGTCCTGAACAC+AGG | + | chr4_2:54629479-54629498 | None:intergenic | 45.0% | |
| ACCTAGCATCTGCTGCATTT+GGG | + | chr4_2:54629553-54629572 | None:intergenic | 45.0% | |
| TGCATGCTTCACGAGATTTC+TGG | - | chr4_2:54629598-54629617 | Msa0607660:intron | 45.0% | |
| GAAGTAAACACGGTCCTAAG+AGG | + | chr4_2:54629706-54629725 | None:intergenic | 45.0% | |
| TAAGGGGACGAAATGTCCAT+CGG | - | chr4_2:54629938-54629957 | Msa0607660:intron | 45.0% | |
| !! | GAAATGTCCATCGGTTCCAT+TGG | - | chr4_2:54629947-54629966 | Msa0607660:intron | 45.0% |
| TGTGTATCCAATGGAACCGA+TGG | + | chr4_2:54629957-54629976 | None:intergenic | 45.0% | |
| AAAACACATGCTGCTAGAGG+TGG | - | chr4_2:54630080-54630099 | Msa0607660:CDS | 45.0% | |
| AAACACATGCTGCTAGAGGT+GGG | - | chr4_2:54630081-54630100 | Msa0607660:CDS | 45.0% | |
| TCTTGGAATGGCATTCGCTT+TGG | + | chr4_2:54630116-54630135 | None:intergenic | 45.0% | |
| CGAATGCCATTCCAAGACAT+TGG | - | chr4_2:54630119-54630138 | Msa0607660:CDS | 45.0% | |
| ATTCTTGGAGTTGGAGGAGG+AGG | + | chr4_2:54627109-54627128 | None:intergenic | 50.0% | |
| AGGATTCTTGGAGTTGGAGG+AGG | + | chr4_2:54627112-54627131 | None:intergenic | 50.0% | |
| TGTTACTGTTGAGGTCCCTC+CGG | + | chr4_2:54627183-54627202 | None:intergenic | 50.0% | |
| TGGATCGTTGTGAAGAGAGG+AGG | - | chr4_2:54627275-54627294 | Msa0607660:three_prime_UTR | 50.0% | |
| GGATCGTTGTGAAGAGAGGA+GGG | - | chr4_2:54627276-54627295 | Msa0607660:three_prime_UTR | 50.0% | |
| !! | GAGAGGTGATGGATCGTTGT+TGG | - | chr4_2:54627315-54627334 | Msa0607660:CDS | 50.0% |
| !! | AGGTGATGGATCGTTGTTGG+AGG | - | chr4_2:54627318-54627337 | Msa0607660:CDS | 50.0% |
| CGTTGTTGGAGGAAGAGAAG+TGG | - | chr4_2:54627329-54627348 | Msa0607660:CDS | 50.0% | |
| AAGATCGGAGGACCATCAGA+AGG | - | chr4_2:54628228-54628247 | Msa0607660:intron | 50.0% | |
| AGATCGGAGGACCATCAGAA+GGG | - | chr4_2:54628229-54628248 | Msa0607660:intron | 50.0% | |
| ! | TGCAGGTGGAGATTCTGAGA+AGG | - | chr4_2:54628605-54628624 | Msa0607660:intron | 50.0% |
| ! | CGACCCCACATAGTGGAATA+AGG | + | chr4_2:54629010-54629029 | None:intergenic | 50.0% |
| TCCCAAATGCAGCAGATGCT+AGG | - | chr4_2:54629549-54629568 | Msa0607660:intron | 50.0% | |
| GACCTAGCATCTGCTGCATT+TGG | + | chr4_2:54629554-54629573 | None:intergenic | 50.0% | |
| AATGCAGCAGATGCTAGGTC+AGG | - | chr4_2:54629554-54629573 | Msa0607660:intron | 50.0% | |
| CTTTCACACAGGTGCAAGAG+TGG | - | chr4_2:54629811-54629830 | Msa0607660:intron | 50.0% | |
| TTGTTGACGAGGCAGCAGAA+TGG | - | chr4_2:54630155-54630174 | Msa0607660:CDS | 50.0% | |
| !! | AGGTGGATGGTGGTGCCATT+TGG | + | chr4_2:54627089-54627108 | None:intergenic | 55.0% |
| TTACTGTTGAGGTCCCTCCG+GGG | + | chr4_2:54627181-54627200 | None:intergenic | 55.0% | |
| GTTACTGTTGAGGTCCCTCC+GGG | + | chr4_2:54627182-54627201 | None:intergenic | 55.0% | |
| CAGAGACGGCTCGAGAAGAT+CGG | - | chr4_2:54628213-54628232 | Msa0607660:intron | 55.0% | |
| TCATAGCCGACCCCACATAG+TGG | + | chr4_2:54629017-54629036 | None:intergenic | 55.0% | |
| AGCAGATGCTAGGTCAGGTG+AGG | - | chr4_2:54629559-54629578 | Msa0607660:intron | 55.0% | |
| GCAGATGCTAGGTCAGGTGA+GGG | - | chr4_2:54629560-54629579 | Msa0607660:intron | 55.0% | |
| AGGTCAGGTGAGGGAAGAGA+TGG | - | chr4_2:54629569-54629588 | Msa0607660:intron | 55.0% | |
| TTGGAGGAGGAGGTGGATGG+TGG | + | chr4_2:54627099-54627118 | None:intergenic | 60.0% | |
| GAGTTGGAGGAGGAGGTGGA+TGG | + | chr4_2:54627102-54627121 | None:intergenic | 60.0% | |
| CTTGGAGTTGGAGGAGGAGG+TGG | + | chr4_2:54627106-54627125 | None:intergenic | 60.0% | |
| ! | GAGGACGGCGAGGAAAGTGT+AGG | + | chr4_2:54627132-54627151 | None:intergenic | 60.0% |
| ACTTTCCTCGCCGTCCTCGT+CGG | - | chr4_2:54627134-54627153 | Msa0607660:three_prime_UTR | 60.0% | |
| ATGGGACTCTCCGACGAGGA+CGG | + | chr4_2:54627147-54627166 | None:intergenic | 60.0% | |
| GAAGATGGGACTCTCCGACG+AGG | + | chr4_2:54627151-54627170 | None:intergenic | 60.0% | |
| AGACGGCTCGAGAAGATCGG+AGG | - | chr4_2:54628216-54628235 | Msa0607660:intron | 60.0% | |
| TCCCATCTTCCTCCGCTCCC+CGG | - | chr4_2:54627161-54627180 | Msa0607660:three_prime_UTR | 65.0% | |
| TCCGGGGAGCGGAGGAAGAT+GGG | + | chr4_2:54627165-54627184 | None:intergenic | 65.0% | |
| ATCTTCCTCCGCTCCCCGGA+GGG | - | chr4_2:54627165-54627184 | Msa0607660:three_prime_UTR | 65.0% | |
| ACTCTCCGACGAGGACGGCG+AGG | + | chr4_2:54627142-54627161 | None:intergenic | 70.0% | |
| CTCCGGGGAGCGGAGGAAGA+TGG | + | chr4_2:54627166-54627185 | None:intergenic | 70.0% | |
| CATCTTCCTCCGCTCCCCGG+AGG | - | chr4_2:54627164-54627183 | Msa0607660:three_prime_UTR | 70.0% | |
| GTTGAGGTCCCTCCGGGGAG+CGG | + | chr4_2:54627176-54627195 | None:intergenic | 70.0% | |
| ! | GAGGTCCCTCCGGGGAGCGG+AGG | + | chr4_2:54627173-54627192 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 54627053 | 54630485 | 54627053 | ID=Msa0607660;Name=Msa0607660 |
| chr4_2 | mRNA | 54627053 | 54630485 | 54627053 | ID=Msa0607660-mRNA-1;Parent=Msa0607660;Name=Msa0607660-mRNA-1;_AED=0.34;_eAED=0.34;_QI=5|1|1|1|1|1|5|247|503 |
| chr4_2 | exon | 54627053 | 54627716 | 54627053 | ID=Msa0607660-mRNA-1:exon:13741;Parent=Msa0607660-mRNA-1 |
| chr4_2 | exon | 54627867 | 54628085 | 54627867 | ID=Msa0607660-mRNA-1:exon:13740;Parent=Msa0607660-mRNA-1 |
| chr4_2 | exon | 54628782 | 54628928 | 54628782 | ID=Msa0607660-mRNA-1:exon:13739;Parent=Msa0607660-mRNA-1 |
| chr4_2 | exon | 54629188 | 54629487 | 54629188 | ID=Msa0607660-mRNA-1:exon:13738;Parent=Msa0607660-mRNA-1 |
| chr4_2 | exon | 54630052 | 54630485 | 54630052 | ID=Msa0607660-mRNA-1:exon:13737;Parent=Msa0607660-mRNA-1 |
| chr4_2 | five_prime_UTR | 54630481 | 54630485 | 54630481 | ID=Msa0607660-mRNA-1:five_prime_utr;Parent=Msa0607660-mRNA-1 |
| chr4_2 | CDS | 54630052 | 54630480 | 54630052 | ID=Msa0607660-mRNA-1:cds;Parent=Msa0607660-mRNA-1 |
| chr4_2 | CDS | 54629188 | 54629487 | 54629188 | ID=Msa0607660-mRNA-1:cds;Parent=Msa0607660-mRNA-1 |
| chr4_2 | CDS | 54628782 | 54628928 | 54628782 | ID=Msa0607660-mRNA-1:cds;Parent=Msa0607660-mRNA-1 |
| chr4_2 | CDS | 54627867 | 54628085 | 54627867 | ID=Msa0607660-mRNA-1:cds;Parent=Msa0607660-mRNA-1 |
| chr4_2 | CDS | 54627300 | 54627716 | 54627300 | ID=Msa0607660-mRNA-1:cds;Parent=Msa0607660-mRNA-1 |
| chr4_2 | three_prime_UTR | 54627053 | 54627299 | 54627053 | ID=Msa0607660-mRNA-1:three_prime_utr;Parent=Msa0607660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
