Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690570 | XP_003607377.1 | 94.978 | 458 | 23 | 0 | 1 | 458 | 44 | 501 | 0.0 | 860 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690570 | G7JRP1 | 94.978 | 458 | 23 | 0 | 1 | 458 | 44 | 501 | 0.0 | 860 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006840 | Msa0690570 | 0.824576 | 7.488864e-54 | -8.615850e-47 |
| Msa0018920 | Msa0690570 | 0.838865 | 2.230700e-57 | -8.615850e-47 |
| Msa0020540 | Msa0690570 | 0.810110 | 1.356773e-50 | -8.615850e-47 |
| Msa0030070 | Msa0690570 | 0.806123 | 9.583230e-50 | -8.615850e-47 |
| Msa0050530 | Msa0690570 | 0.821409 | 4.100166e-53 | -8.615850e-47 |
| Msa0079410 | Msa0690570 | 0.810873 | 9.281795e-51 | -8.615850e-47 |
| Msa0080370 | Msa0690570 | 0.809269 | 2.057258e-50 | -8.615850e-47 |
| Msa0080440 | Msa0690570 | 0.809865 | 1.531914e-50 | -8.615850e-47 |
| Msa0091350 | Msa0690570 | 0.823683 | 1.214055e-53 | -8.615850e-47 |
| Msa0100600 | Msa0690570 | 0.836961 | 6.885233e-57 | -8.615850e-47 |
| Msa0100890 | Msa0690570 | 0.822642 | 2.123727e-53 | -8.615850e-47 |
| Msa0106630 | Msa0690570 | 0.800962 | 1.126965e-48 | -8.615850e-47 |
| Msa0605520 | Msa0690570 | 0.814180 | 1.756911e-51 | -8.615850e-47 |
| Msa0607660 | Msa0690570 | 0.929240 | 9.225295e-93 | -8.615850e-47 |
| Msa0607800 | Msa0690570 | 0.805706 | 1.172547e-49 | -8.615850e-47 |
| Msa0608350 | Msa0690570 | 0.808561 | 2.915145e-50 | -8.615850e-47 |
| Msa0615630 | Msa0690570 | 0.806749 | 7.072550e-50 | -8.615850e-47 |
| Msa0620500 | Msa0690570 | 0.818890 | 1.547704e-52 | -8.615850e-47 |
| Msa0625620 | Msa0690570 | 0.815875 | 7.387172e-52 | -8.615850e-47 |
| Msa0640800 | Msa0690570 | 0.847324 | 1.242498e-59 | -8.615850e-47 |
| Msa0647440 | Msa0690570 | 0.815694 | 8.109318e-52 | -8.615850e-47 |
| Msa0648040 | Msa0690570 | 0.815004 | 1.154325e-51 | -8.615850e-47 |
| Msa0648760 | Msa0690570 | 0.829625 | 4.635679e-55 | -8.615850e-47 |
| Msa0654740 | Msa0690570 | 0.807387 | 5.181243e-50 | -8.615850e-47 |
| Msa0657210 | Msa0690570 | 0.802380 | 5.765576e-49 | -8.615850e-47 |
| Msa0663290 | Msa0690570 | 0.800145 | 1.653107e-48 | -8.615850e-47 |
| Msa0664070 | Msa0690570 | 0.800287 | 1.546890e-48 | -8.615850e-47 |
| Msa0688380 | Msa0690570 | 0.853400 | 2.450953e-61 | -8.615850e-47 |
| Msa0688620 | Msa0690570 | 0.834348 | 3.157043e-56 | -8.615850e-47 |
| Msa0689830 | Msa0690570 | 0.803575 | 3.265484e-49 | -8.615850e-47 |
| Msa0690320 | Msa0690570 | 0.807795 | 4.244548e-50 | -8.615850e-47 |
| Msa0690570 | Msa0690740 | 0.827225 | 1.759294e-54 | -8.615850e-47 |
| Msa0690570 | Msa0691270 | 0.813683 | 2.261055e-51 | -8.615850e-47 |
| Msa0690570 | Msa0701250 | 0.808293 | 3.325265e-50 | -8.615850e-47 |
| Msa0690570 | Msa0707260 | 0.851704 | 7.461913e-61 | -8.615850e-47 |
| Msa0690570 | Msa0714520 | 0.801201 | 1.006938e-48 | -8.615850e-47 |
| Msa0690570 | Msa0717900 | 0.837567 | 4.817607e-57 | -8.615850e-47 |
| Msa0690570 | Msa0720280 | 0.844885 | 5.730426e-59 | -8.615850e-47 |
| Msa0690570 | Msa0737130 | 0.807626 | 4.610286e-50 | -8.615850e-47 |
| Msa0690570 | Msa0749190 | 0.830892 | 2.273094e-55 | -8.615850e-47 |
| Msa0690570 | Msa0750520 | 0.831973 | 1.232195e-55 | -8.615850e-47 |
| Msa0690570 | Msa0751250 | 0.815875 | 7.387739e-52 | -8.615850e-47 |
| Msa0690570 | Msa0751720 | 0.848830 | 4.773871e-60 | -8.615850e-47 |
| Msa0690570 | Msa0780820 | 0.881421 | 2.434544e-70 | -8.615850e-47 |
| Msa0690570 | Msa0803140 | 0.845587 | 3.701494e-59 | -8.615850e-47 |
| Msa0690570 | Msa0816080 | 0.832680 | 8.231397e-56 | -8.615850e-47 |
| Msa0690570 | Msa0816230 | 0.830138 | 3.476315e-55 | -8.615850e-47 |
| Msa0690570 | Msa0827420 | 0.809055 | 2.285990e-50 | -8.615850e-47 |
| Msa0690570 | Msa0831620 | 0.807278 | 5.465930e-50 | -8.615850e-47 |
| Msa0690570 | Msa0831820 | 0.823610 | 1.262710e-53 | -8.615850e-47 |
| Msa0690570 | Msa0837680 | 0.834833 | 2.384688e-56 | -8.615850e-47 |
| Msa0690570 | Msa0841500 | 0.832047 | 1.181397e-55 | -8.615850e-47 |
| Msa0690570 | Msa0846900 | 0.805357 | 1.387787e-49 | -8.615850e-47 |
| Msa0690570 | Msa0861440 | 0.810643 | 1.041001e-50 | -8.615850e-47 |
| Msa0690570 | Msa0900090 | 0.825628 | 4.225508e-54 | -8.615850e-47 |
| Msa0690570 | Msa0901150 | 0.812523 | 4.061734e-51 | -8.615850e-47 |
| Msa0690570 | Msa0926310 | 0.847767 | 9.388416e-60 | -8.615850e-47 |
| Msa0690570 | Msa0945900 | 0.814668 | 1.370333e-51 | -8.615850e-47 |
| Msa0690570 | Msa0965470 | 0.802883 | 4.541152e-49 | -8.615850e-47 |
| Msa0690570 | Msa0976380 | 0.824565 | 7.535486e-54 | -8.615850e-47 |
| Msa0690570 | Msa1000780 | 0.850907 | 1.253593e-60 | -8.615850e-47 |
| Msa0690570 | Msa1000970 | 0.812228 | 4.711316e-51 | -8.615850e-47 |
| Msa0690570 | Msa1008670 | 0.821471 | 3.966944e-53 | -8.615850e-47 |
| Msa0690570 | Msa1008680 | 0.819372 | 1.202584e-52 | -8.615850e-47 |
| Msa0690570 | Msa1008850 | 0.813176 | 2.922118e-51 | -8.615850e-47 |
| Msa0690570 | Msa1021560 | 0.805202 | 1.495707e-49 | -8.615850e-47 |
| Msa0690570 | Msa1036090 | 0.804545 | 2.052205e-49 | -8.615850e-47 |
| Msa0690570 | Msa1041370 | 0.807919 | 3.995074e-50 | -8.615850e-47 |
| Msa0690570 | Msa1060900 | 0.803816 | 2.910404e-49 | -8.615850e-47 |
| Msa0690570 | Msa1071410 | 0.832853 | 7.458706e-56 | -8.615850e-47 |
| Msa0690570 | Msa1076020 | 0.838677 | 2.494693e-57 | -8.615850e-47 |
| Msa0690570 | Msa1081270 | 0.802428 | 5.635564e-49 | -8.615850e-47 |
| Msa0690570 | Msa1106220 | 0.810632 | 1.046779e-50 | -8.615850e-47 |
| Msa0690570 | Msa1119380 | 0.807511 | 4.878438e-50 | -8.615850e-47 |
| Msa0690570 | Msa1139050 | 0.800203 | 1.608718e-48 | -8.615850e-47 |
| Msa0690570 | Msa1144990 | 0.804035 | 2.620752e-49 | -8.615850e-47 |
| Msa0690570 | Msa1148930 | 0.813680 | 2.263955e-51 | -8.615850e-47 |
| Msa0690570 | Msa1159590 | 0.807148 | 5.824272e-50 | -8.615850e-47 |
| Msa0690570 | Msa1163180 | 0.843749 | 1.157194e-58 | -8.615850e-47 |
| Msa0690570 | Msa1166820 | 0.802337 | 5.885207e-49 | -8.615850e-47 |
| Msa0690570 | Msa1169190 | 0.800856 | 1.184479e-48 | -8.615850e-47 |
| Msa0690570 | Msa1190390 | 0.807948 | 3.937795e-50 | -8.615850e-47 |
| Msa0690570 | Msa1191000 | 0.808282 | 3.343556e-50 | -8.615850e-47 |
| Msa0690570 | Msa1206040 | 0.812217 | 4.738888e-51 | -8.615850e-47 |
| Msa0690570 | Msa1215980 | 0.819540 | 1.100872e-52 | -8.615850e-47 |
| Msa0690570 | Msa1219770 | 0.819231 | 1.294610e-52 | -8.615850e-47 |
| Msa0690570 | Msa1252790 | 0.804686 | 1.918002e-49 | -8.615850e-47 |
| Msa0690570 | Msa1254420 | 0.821016 | 5.050948e-53 | -8.615850e-47 |
| Msa0690570 | Msa1254540 | 0.808835 | 2.547758e-50 | -8.615850e-47 |
| Msa0690570 | Msa1266690 | 0.801708 | 7.927187e-49 | -8.615850e-47 |
| Msa0690570 | Msa1267930 | 0.807083 | 6.011177e-50 | -8.615850e-47 |
| Msa0690570 | Msa1282300 | 0.809263 | 2.063031e-50 | -8.615850e-47 |
| Msa0690570 | Msa1294460 | 0.817871 | 2.633515e-52 | -8.615850e-47 |
| Msa0690570 | Msa1294790 | 0.851194 | 1.040282e-60 | -8.615850e-47 |
| Msa0690570 | Msa1297070 | 0.813544 | 2.425791e-51 | -8.615850e-47 |
| Msa0690570 | Msa1328870 | 0.808973 | 2.379668e-50 | -8.615850e-47 |
| Msa0690570 | Msa1333360 | 0.806614 | 7.553271e-50 | -8.615850e-47 |
| Msa0690570 | Msa1339230 | 0.841990 | 3.396953e-58 | -8.615850e-47 |
| Msa0690570 | Msa1372030 | 0.829555 | 4.822465e-55 | -8.615850e-47 |
| Msa0690570 | Msa1381800 | 0.833687 | 4.621908e-56 | -8.615850e-47 |
| Msa0690570 | Msa1387500 | 0.815481 | 9.043170e-52 | -8.615850e-47 |
| Msa0690570 | Msa1389820 | 0.840038 | 1.105886e-57 | -8.615850e-47 |
| Msa0690570 | Msa1390210 | 0.827146 | 1.837838e-54 | -8.615850e-47 |
| Msa0690570 | Msa1393560 | 0.854165 | 1.475886e-61 | -8.615850e-47 |
| Msa0690570 | Msa1399190 | 0.837952 | 3.835966e-57 | -8.615850e-47 |
| Msa0690570 | Msa1410190 | 0.801276 | 9.719797e-49 | -8.615850e-47 |
| Msa0690570 | Msa1424370 | 0.800213 | 1.601614e-48 | -8.615850e-47 |
| Msa0690570 | Msa1426320 | 0.830160 | 3.433904e-55 | -8.615850e-47 |
| Msa0690570 | Msa1432060 | 0.813044 | 3.124227e-51 | -8.615850e-47 |
| Msa0690570 | Msa1435100 | 0.827136 | 1.848323e-54 | -8.615850e-47 |
| Msa0690570 | Msa1439730 | 0.828624 | 8.104777e-55 | -8.615850e-47 |
| Msa0125590 | Msa0690570 | 0.829886 | 4.005314e-55 | -8.615850e-47 |
| Msa0127340 | Msa0690570 | 0.810771 | 9.765442e-51 | -8.615850e-47 |
| Msa0165830 | Msa0690570 | 0.800134 | 1.661510e-48 | -8.615850e-47 |
| Msa0168380 | Msa0690570 | 0.804856 | 1.766697e-49 | -8.615850e-47 |
| Msa0170070 | Msa0690570 | 0.847565 | 1.066967e-59 | -8.615850e-47 |
| Msa0172590 | Msa0690570 | 0.812950 | 3.275683e-51 | -8.615850e-47 |
| Msa0186360 | Msa0690570 | 0.809451 | 1.880266e-50 | -8.615850e-47 |
| Msa0204970 | Msa0690570 | 0.833055 | 6.644987e-56 | -8.615850e-47 |
| Msa0225800 | Msa0690570 | 0.822428 | 2.381649e-53 | -8.615850e-47 |
| Msa0364680 | Msa0690570 | 0.812089 | 5.053222e-51 | -8.615850e-47 |
| Msa0373170 | Msa0690570 | 0.865132 | 7.368757e-65 | -8.615850e-47 |
| Msa0382230 | Msa0690570 | 0.831189 | 1.921580e-55 | -8.615850e-47 |
| Msa0388250 | Msa0690570 | 0.806672 | 7.341754e-50 | -8.615850e-47 |
| Msa0388620 | Msa0690570 | 0.809517 | 1.819960e-50 | -8.615850e-47 |
| Msa0404770 | Msa0690570 | 0.806135 | 9.529110e-50 | -8.615850e-47 |
| Msa0412130 | Msa0690570 | 0.800262 | 1.564859e-48 | -8.615850e-47 |
| Msa0415820 | Msa0690570 | 0.818163 | 2.262636e-52 | -8.615850e-47 |
| Msa0416210 | Msa0690570 | 0.806968 | 6.356778e-50 | -8.615850e-47 |
| Msa0421750 | Msa0690570 | 0.864280 | 1.362131e-64 | -8.615850e-47 |
| Msa0433630 | Msa0690570 | 0.848163 | 7.302297e-60 | -8.615850e-47 |
| Msa0433760 | Msa0690570 | 0.802428 | 5.636312e-49 | -8.615850e-47 |
| Msa0467690 | Msa0690570 | 0.864774 | 9.545002e-65 | -8.615850e-47 |
| Msa0477480 | Msa0690570 | 0.824929 | 6.185141e-54 | -8.615850e-47 |
| Msa0249870 | Msa0690570 | 0.808883 | 2.488354e-50 | -8.615850e-47 |
| Msa0260630 | Msa0690570 | 0.808343 | 3.245216e-50 | -8.615850e-47 |
| Msa0281540 | Msa0690570 | 0.834686 | 2.596381e-56 | -8.615850e-47 |
| Msa0288400 | Msa0690570 | 0.841110 | 5.796810e-58 | -8.615850e-47 |
| Msa0320580 | Msa0690570 | 0.838476 | 2.812111e-57 | -8.615850e-47 |
| Msa0342220 | Msa0690570 | 0.838488 | 2.790951e-57 | -8.615850e-47 |
| Msa0344110 | Msa0690570 | 0.842920 | 1.925358e-58 | -8.615850e-47 |
| Msa0358060 | Msa0690570 | 0.802422 | 5.651650e-49 | -8.615850e-47 |
| Msa0506880 | Msa0690570 | 0.824267 | 8.852217e-54 | -8.615850e-47 |
| Msa0507810 | Msa0690570 | 0.823249 | 1.533501e-53 | -8.615850e-47 |
| Msa0507820 | Msa0690570 | 0.820448 | 6.822418e-53 | -8.615850e-47 |
| Msa0507920 | Msa0690570 | 0.813811 | 2.118547e-51 | -8.615850e-47 |
| Msa0514020 | Msa0690570 | 0.862485 | 4.900540e-64 | -8.615850e-47 |
| Msa0520680 | Msa0690570 | 0.830624 | 2.644298e-55 | -8.615850e-47 |
| Msa0521510 | Msa0690570 | 0.854055 | 1.588172e-61 | -8.615850e-47 |
| Msa0521530 | Msa0690570 | 0.831919 | 1.270243e-55 | -8.615850e-47 |
| Msa0523380 | Msa0690570 | 0.803652 | 3.147275e-49 | -8.615850e-47 |
| Msa0527850 | Msa0690570 | 0.817910 | 2.580634e-52 | -8.615850e-47 |
| Msa0541740 | Msa0690570 | 0.812279 | 4.592709e-51 | -8.615850e-47 |
| Msa0544410 | Msa0690570 | 0.843581 | 1.283119e-58 | -8.615850e-47 |
| Msa0544430 | Msa0690570 | 0.820415 | 6.944583e-53 | -8.615850e-47 |
| Msa0554300 | Msa0690570 | 0.839370 | 1.650401e-57 | -8.615850e-47 |
| Msa0561560 | Msa0690570 | 0.805912 | 1.061464e-49 | -8.615850e-47 |
| Msa0564980 | Msa0690570 | 0.812290 | 4.567794e-51 | -8.615850e-47 |
| Msa0572830 | Msa0690570 | 0.874341 | 7.283409e-68 | -8.615850e-47 |
| Msa0582460 | Msa0690570 | 0.824158 | 9.393634e-54 | -8.615850e-47 |
| Msa0586200 | Msa0690570 | 0.825558 | 4.391022e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690570 | MtrunA17_Chr4g0039341 | 94.978 | 458 | 23 | 0 | 1 | 458 | 44 | 501 | 0.0 | 860 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0690570 | AT1G51405.1 | 44.924 | 394 | 184 | 10 | 45 | 435 | 118 | 481 | 2.32e-86 | 273 |
| Msa0690570 | AT1G51405.2 | 51.087 | 276 | 123 | 4 | 45 | 319 | 118 | 382 | 1.13e-75 | 242 |
Find 117 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCACCATTGGAACATTTAT+TGG | 0.136920 | 4_4:+58418999 | None:intergenic |
| TGCAGGCTTCACGAGATTTC+TGG | 0.154752 | 4_4:-58417042 | Msa0690570:CDS |
| TGTATGCTGGCTCGATATTT+AGG | 0.231596 | 4_4:-58416221 | Msa0690570:three_prime_UTR |
| GAAGAATGTTGATAGGGTTT+TGG | 0.243640 | 4_4:-58418175 | Msa0690570:CDS |
| GGAGATTCTGAGAAGGAAAA+TGG | 0.295996 | 4_4:-58417637 | Msa0690570:CDS |
| ATGCTTTAAGATTGATGGTT+TGG | 0.297180 | 4_4:-58416317 | Msa0690570:three_prime_UTR |
| CTCGATATTTAGGGTGTGTT+TGG | 0.298421 | 4_4:-58416211 | Msa0690570:three_prime_UTR |
| AAGGAGGCACGCAATGATTT+AGG | 0.306740 | 4_4:-58416346 | Msa0690570:three_prime_UTR |
| ACCTAGCATCTCCTGCATTT+GGG | 0.322418 | 4_4:+58417090 | None:intergenic |
| GTACTATGCTTAGAGAAATA+AGG | 0.346771 | 4_4:-58416277 | Msa0690570:three_prime_UTR |
| TGCTTTAAGATTGATGGTTT+GGG | 0.347121 | 4_4:-58416316 | Msa0690570:three_prime_UTR |
| GACCTAGCATCTCCTGCATT+TGG | 0.353377 | 4_4:+58417089 | None:intergenic |
| GTATGCTGGCTCGATATTTA+GGG | 0.358074 | 4_4:-58416220 | Msa0690570:three_prime_UTR |
| GTGAAGGGAAGAATGTTGAT+AGG | 0.361695 | 4_4:-58418182 | Msa0690570:CDS |
| GTTTCATGCTTTAAGATTGA+TGG | 0.374275 | 4_4:-58416322 | Msa0690570:three_prime_UTR |
| TCTTGGAACGGCATTCGCTT+TGG | 0.396493 | 4_4:+58416527 | None:intergenic |
| TGTGAAGGGAACCTGTGTTC+AGG | 0.397994 | 4_4:-58417175 | Msa0690570:CDS |
| AGAGATAGCAGTTAAGAAGT+TGG | 0.398549 | 4_4:-58418844 | Msa0690570:CDS |
| GAATGAACAAAATGTAGTTA+AGG | 0.398858 | 4_4:-58416720 | Msa0690570:CDS |
| TTACACGTCCTAACATTATC+AGG | 0.399955 | 4_4:-58416371 | Msa0690570:three_prime_UTR |
| GGGGATATTATTAGAGAGAA+TGG | 0.402963 | 4_4:-58417601 | Msa0690570:CDS |
| TTATCTTCCTTTGAGAATGC+TGG | 0.406246 | 4_4:+58416254 | None:intergenic |
| TACTTGAAATTCAACTCTCT+TGG | 0.421214 | 4_4:+58417524 | None:intergenic |
| ACGAGTTGTTTCCAATGTCT+TGG | 0.422000 | 4_4:+58416510 | None:intergenic |
| AACATGTTAGGGACATTGTT+TGG | 0.423072 | 4_4:-58419050 | Msa0690570:CDS |
| AATGAACAAAATGTAGTTAA+GGG | 0.423538 | 4_4:-58416719 | Msa0690570:CDS |
| CTCCGGGGAGCGGAGGAAGA+TGG | 0.425178 | 4_4:+58419086 | None:intergenic |
| GTTACTGTTGAGGTCCCTCC+GGG | 0.427432 | 4_4:+58419070 | None:intergenic |
| GACCTCAACAGTAACATGTT+AGG | 0.429213 | 4_4:-58419062 | Msa0690570:exon |
| TGAATTTCAAGTACCTCATC+AGG | 0.430682 | 4_4:-58417514 | Msa0690570:intron |
| GTTGTTATTGAGAGAGGTGA+TGG | 0.436814 | 4_4:-58418945 | Msa0690570:CDS |
| CTCCTTCACCTGATAATGTT+AGG | 0.437534 | 4_4:+58416363 | None:intergenic |
| ATCTTCCTCCGCTCCCCGGA+GGG | 0.438821 | 4_4:-58419084 | Msa0690570:five_prime_UTR |
| TTTGAGGGAGTTTGAAGAGA+TGG | 0.450041 | 4_4:-58417992 | Msa0690570:CDS |
| ACATTTATTGGAGCTTCAGC+AGG | 0.459760 | 4_4:+58419011 | None:intergenic |
| GAGAGGTGATGGATCGTTGT+TGG | 0.460974 | 4_4:-58418934 | Msa0690570:CDS |
| TCCGGGGAGCGGAGGAAGAT+GGG | 0.463847 | 4_4:+58419087 | None:intergenic |
| GACTATTGTAAGAAGAATAG+TGG | 0.465343 | 4_4:-58417143 | Msa0690570:CDS |
| TCTCAGCAGTTGAAGAAAGA+TGG | 0.473697 | 4_4:+58416438 | None:intergenic |
| TCCCATCTTCCTCCGCTCCC+CGG | 0.474058 | 4_4:-58419088 | Msa0690570:five_prime_UTR |
| TTCAAAATCAACACAGAGCA+TGG | 0.479121 | 4_4:+58416751 | None:intergenic |
| CATCAGAAGGGATATATTTG+AGG | 0.484387 | 4_4:-58418008 | Msa0690570:CDS |
| GTTGAGGTCCCTCCGGGGAG+CGG | 0.489811 | 4_4:+58419076 | None:intergenic |
| ACCTCAACAGTAACATGTTA+GGG | 0.497942 | 4_4:-58419061 | Msa0690570:exon |
| AAAATGGAGGGATTGTCAAA+GGG | 0.498376 | 4_4:-58417621 | Msa0690570:CDS |
| GAAATGTCCATCGGTTCCAT+TGG | 0.499255 | 4_4:-58416693 | Msa0690570:CDS |
| GATAATAGTGTTCTTGCAAG+TGG | 0.499315 | 4_4:-58417931 | Msa0690570:CDS |
| CGTTGTTGGAGGAAGAGAAG+TGG | 0.501323 | 4_4:-58418920 | Msa0690570:CDS |
| AGGTGATGGATCGTTGTTGG+AGG | 0.501863 | 4_4:-58418931 | Msa0690570:CDS |
| GGAAAGGACTCGTTCAAAGA+TGG | 0.505693 | 4_4:-58418823 | Msa0690570:CDS |
| TGAAGGGAAGAATGTTGATA+GGG | 0.506304 | 4_4:-58418181 | Msa0690570:CDS |
| TGTTACTGTTGAGGTCCCTC+CGG | 0.508567 | 4_4:+58419069 | None:intergenic |
| TTGTTGACGAGGCAGCAAAA+TGG | 0.510915 | 4_4:-58416485 | Msa0690570:CDS |
| CTTTCACACAGGTGCAAGAG+TGG | 0.511085 | 4_4:-58416829 | Msa0690570:intron |
| GGATCGTTGTGAAGAGAGGA+GGG | 0.513458 | 4_4:-58418973 | Msa0690570:CDS |
| GGAAGAGATGGAAGAACTGC+AGG | 0.514793 | 4_4:-58417059 | Msa0690570:CDS |
| AAGAAAGATGGCAATGCAAA+GGG | 0.516461 | 4_4:+58416450 | None:intergenic |
| AGAACAATGGTCCCAAATGC+AGG | 0.519186 | 4_4:-58417101 | Msa0690570:CDS |
| GAGAGAGTTGTTATTGAGAG+AGG | 0.525273 | 4_4:-58418951 | Msa0690570:CDS |
| AGGTCAGGTGAGGGAAGAGA+TGG | 0.530355 | 4_4:-58417071 | Msa0690570:CDS |
| AAGTTTCGGTTCTGCAGAGA+CGG | 0.530765 | 4_4:-58418050 | Msa0690570:CDS |
| GAAAATGGAGGGATTGTCAA+AGG | 0.533587 | 4_4:-58417622 | Msa0690570:CDS |
| AACTCTTTCTGTGTATCCAA+TGG | 0.534032 | 4_4:+58416677 | None:intergenic |
| AAATGTTCCAATGGTGATGT+TGG | 0.536540 | 4_4:-58418994 | Msa0690570:CDS |
| CAACGATCCAACATCACCAT+TGG | 0.537506 | 4_4:+58418987 | None:intergenic |
| GAGGTCCCTCCGGGGAGCGG+AGG | 0.537807 | 4_4:+58419079 | None:intergenic |
| CGAATGCCGTTCCAAGACAT+TGG | 0.539282 | 4_4:-58416521 | Msa0690570:CDS |
| GATATTATTAGAGAGAATGG+AGG | 0.539583 | 4_4:-58417598 | Msa0690570:CDS |
| CAGAGACGGCTCGAGAAGAT+CGG | 0.543380 | 4_4:-58418036 | Msa0690570:CDS |
| ATCAGAAGGGATATATTTGA+GGG | 0.543921 | 4_4:-58418007 | Msa0690570:CDS |
| TGGATCGTTGTGAAGAGAGG+AGG | 0.548525 | 4_4:-58418974 | Msa0690570:CDS |
| GGAAGAATAAAGATTTGTGA+AGG | 0.550668 | 4_4:-58418198 | Msa0690570:CDS |
| AATGCAGGAGATGCTAGGTC+AGG | 0.555822 | 4_4:-58417086 | Msa0690570:CDS |
| TAAAAGTGTATTGTGTATGC+TGG | 0.558195 | 4_4:-58416234 | Msa0690570:three_prime_UTR |
| CTCAAATATATCCCTTCTGA+TGG | 0.560000 | 4_4:+58418009 | None:intergenic |
| TTGTTTCCAATGTCTTGGAA+CGG | 0.560899 | 4_4:+58416515 | None:intergenic |
| AAATGGAGGGATTGTCAAAG+GGG | 0.562848 | 4_4:-58417620 | Msa0690570:CDS |
| TAGCAGTTAAGAAGTTGGAA+AGG | 0.569875 | 4_4:-58418839 | Msa0690570:CDS |
| AGCTCCAATAAATGTTCCAA+TGG | 0.574520 | 4_4:-58419003 | Msa0690570:CDS |
| AATAGTAGTTTGCAGCTCAA+AGG | 0.575630 | 4_4:-58416645 | Msa0690570:CDS |
| GAAGAAAGATGGCAATGCAA+AGG | 0.576278 | 4_4:+58416449 | None:intergenic |
| TCCCTAACATGTTACTGTTG+AGG | 0.580614 | 4_4:+58419060 | None:intergenic |
| CATCTTCCTCCGCTCCCCGG+AGG | 0.583736 | 4_4:-58419085 | Msa0690570:five_prime_UTR |
| ATGGGACTCTCCGACGAGGA+CGG | 0.584150 | 4_4:+58419105 | None:intergenic |
| AAGATCGGAGGACCATCAGA+AGG | 0.585962 | 4_4:-58418021 | Msa0690570:CDS |
| AAAACACATGCTGCTAGAGG+TGG | 0.586512 | 4_4:-58416560 | Msa0690570:CDS |
| TGTGTATCCAATGGAACCGA+TGG | 0.591976 | 4_4:+58416686 | None:intergenic |
| GATTCTGAGAAGGAAAATGG+AGG | 0.593121 | 4_4:-58417634 | Msa0690570:CDS |
| ATGAACAAAATGTAGTTAAG+GGG | 0.598650 | 4_4:-58416718 | Msa0690570:CDS |
| ATTCTGAGAAGGAAAATGGA+GGG | 0.600555 | 4_4:-58417633 | Msa0690570:CDS |
| TGTTGGATCGTTGTGAAGAG+AGG | 0.601931 | 4_4:-58418977 | Msa0690570:CDS |
| AATCAAGAATATACCTGATG+AGG | 0.602317 | 4_4:+58417501 | None:intergenic |
| GAAGAATAAAGATTTGTGAA+GGG | 0.602622 | 4_4:-58418197 | Msa0690570:CDS |
| GATTTGAGAATCAGAATGCA+AGG | 0.608352 | 4_4:+58417009 | None:intergenic |
| TCTTGCAATGTCCTGAACAC+AGG | 0.609133 | 4_4:+58417164 | None:intergenic |
| GGAGATGCTAGGTCAGGTGA+GGG | 0.610800 | 4_4:-58417080 | Msa0690570:CDS |
| TGAAGCAGAACTACTAGCAG+TGG | 0.613311 | 4_4:+58417551 | None:intergenic |
| GTCCTAACATTATCAGGTGA+AGG | 0.615453 | 4_4:-58416365 | Msa0690570:three_prime_UTR |
| AATAAGGCCAGCATTCTCAA+AGG | 0.616210 | 4_4:-58416261 | Msa0690570:three_prime_UTR |
| TGCAGGTGGAGATTCTGAGA+AGG | 0.623768 | 4_4:-58417644 | Msa0690570:intron |
| GGACTCGTTCAAAGATGGAA+CGG | 0.624780 | 4_4:-58418818 | Msa0690570:CDS |
| TCCCAAATGCAGGAGATGCT+AGG | 0.625805 | 4_4:-58417091 | Msa0690570:CDS |
| AAGTGAAACTAACAGAAACA+AGG | 0.628076 | 4_4:+58418772 | None:intergenic |
| AGGAGATGCTAGGTCAGGTG+AGG | 0.633324 | 4_4:-58417081 | Msa0690570:CDS |
| TGAGTGTAACTTGTTGAGGA+TGG | 0.633977 | 4_4:-58418871 | Msa0690570:CDS |
| GAGCTGAGTGTAACTTGTTG+AGG | 0.636916 | 4_4:-58418875 | Msa0690570:CDS |
| TAAGGGGACGAAATGTCCAT+CGG | 0.657673 | 4_4:-58416702 | Msa0690570:CDS |
| AGATCGGAGGACCATCAGAA+GGG | 0.658949 | 4_4:-58418020 | Msa0690570:CDS |
| AGACGGCTCGAGAAGATCGG+AGG | 0.667780 | 4_4:-58418033 | Msa0690570:CDS |
| AGTGAAACTAACAGAAACAA+GGG | 0.667912 | 4_4:+58418773 | None:intergenic |
| CTAACATTATCAGGTGAAGG+AGG | 0.670893 | 4_4:-58416362 | Msa0690570:three_prime_UTR |
| ACAACTCGTCATTGTTGACG+AGG | 0.679111 | 4_4:-58416496 | Msa0690570:CDS |
| AGAGAAGTGGAAGTTTCAAG+CGG | 0.681462 | 4_4:-58418907 | Msa0690570:CDS |
| GAAGATGGGACTCTCCGACG+AGG | 0.714622 | 4_4:+58419101 | None:intergenic |
| AGAAAACAGAAAACACAGTG+AGG | 0.720156 | 4_4:-58416603 | Msa0690570:CDS |
| TTAGAGTTGAGACAGAACAA+TGG | 0.748998 | 4_4:-58417114 | Msa0690570:CDS |
| TTACTGTTGAGGTCCCTCCG+GGG | 0.752755 | 4_4:+58419071 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATATAACTTATAAACA+TGG | + | chr4_4:58417465-58417484 | None:intergenic | 10.0% |
| !! | TTTGAAAAAGAAAAATAAAG+AGG | + | chr4_4:58416543-58416562 | None:intergenic | 15.0% |
| !! | TTATTAAAGTCGTATTTAAT+TGG | + | chr4_4:58417881-58417900 | None:intergenic | 15.0% |
| !!! | TCAAACTTTCATTTTTTGTT+TGG | - | chr4_4:58416558-58416577 | Msa0690570:CDS | 20.0% |
| !!! | CAAACTTTCATTTTTTGTTT+GGG | - | chr4_4:58416559-58416578 | Msa0690570:CDS | 20.0% |
| !!! | TCTAGTTTTAAACTTATTTC+TGG | + | chr4_4:58416835-58416854 | None:intergenic | 20.0% |
| !! | TTAAAACTAGACATATCATA+AGG | - | chr4_4:58416844-58416863 | Msa0690570:intron | 20.0% |
| !!! | AAATTTTGACAAACAAGTTT+CGG | - | chr4_4:58417224-58417243 | Msa0690570:intron | 20.0% |
| !!! | ATAAAAATTTCTAAAGATGG+TGG | + | chr4_4:58417410-58417429 | None:intergenic | 20.0% |
| !!! | CAGATAAAAATTTCTAAAGA+TGG | + | chr4_4:58417413-58417432 | None:intergenic | 20.0% |
| !!! | CTGAATTTTTTATTAATGGT+GGG | + | chr4_4:58417905-58417924 | None:intergenic | 20.0% |
| !!! | TCTGAATTTTTTATTAATGG+TGG | + | chr4_4:58417906-58417925 | None:intergenic | 20.0% |
| !!! | ACGTCTGAATTTTTTATTAA+TGG | + | chr4_4:58417909-58417928 | None:intergenic | 20.0% |
| !!! | TTGAATTCGTTCTTTTAATT+CGG | + | chr4_4:58418046-58418065 | None:intergenic | 20.0% |
| !! | AATGAACAAAATGTAGTTAA+GGG | - | chr4_4:58418569-58418588 | Msa0690570:intron | 20.0% |
| !!! | GTTTTAAACTTATTTCTGGT+TGG | + | chr4_4:58416831-58416850 | None:intergenic | 25.0% |
| ! | TAAGTACTTATGAGATTGTT+TGG | + | chr4_4:58416887-58416906 | None:intergenic | 25.0% |
| !!! | TATGCATGTTTTTAACATGA+TGG | - | chr4_4:58417022-58417041 | Msa0690570:CDS | 25.0% |
| !!! | ATGTTTTTAACATGATGGTT+TGG | - | chr4_4:58417027-58417046 | Msa0690570:CDS | 25.0% |
| !! | TTGATCTTTAACTTAGAAAG+TGG | - | chr4_4:58417060-58417079 | Msa0690570:CDS | 25.0% |
| ! | GAAGAATAAAGATTTGTGAA+GGG | - | chr4_4:58417091-58417110 | Msa0690570:CDS | 25.0% |
| !! | ATCAACAGTTAATGATTTTG+AGG | - | chr4_4:58417185-58417204 | Msa0690570:CDS | 25.0% |
| !! | TCAACAGTTAATGATTTTGA+GGG | - | chr4_4:58417186-58417205 | Msa0690570:CDS | 25.0% |
| ! | ATCTAAATTACATAGCTCAT+TGG | + | chr4_4:58417506-58417525 | None:intergenic | 25.0% |
| !!! | AATAGCAAAAAGCATTTGTA+TGG | + | chr4_4:58417581-58417600 | None:intergenic | 25.0% |
| !!! | TATTTTGTCCTTTTTAGTGT+TGG | - | chr4_4:58417597-58417616 | Msa0690570:CDS | 25.0% |
| !! | TGAATTTTATTGAACTTTGC+AGG | - | chr4_4:58417627-58417646 | Msa0690570:CDS | 25.0% |
| ! | AATAATCTACAATCAACTAG+TGG | + | chr4_4:58417819-58417838 | None:intergenic | 25.0% |
| !! | TTACATCATTTTGTAGAGAT+TGG | + | chr4_4:58418304-58418323 | None:intergenic | 25.0% |
| ! | CAACATATAATCCTTAGAAA+TGG | + | chr4_4:58418392-58418411 | None:intergenic | 25.0% |
| !! | CATTTCTAAGGATTATATGT+TGG | - | chr4_4:58418390-58418409 | Msa0690570:intron | 25.0% |
| ! | AATACAAAGTTAATGCAAAC+AGG | + | chr4_4:58418437-58418456 | None:intergenic | 25.0% |
| !! | TAACTACATTTTGTTCATTC+TGG | + | chr4_4:58418568-58418587 | None:intergenic | 25.0% |
| ! | GAATGAACAAAATGTAGTTA+AGG | - | chr4_4:58418568-58418587 | Msa0690570:intron | 25.0% |
| ! | ATGAACAAAATGTAGTTAAG+GGG | - | chr4_4:58418570-58418589 | Msa0690570:intron | 25.0% |
| ATCACCATTGGAACATTTAT+TGG | + | chr4_4:58416292-58416311 | None:intergenic | 30.0% | |
| AGTGAAACTAACAGAAACAA+GGG | + | chr4_4:58416518-58416537 | None:intergenic | 30.0% | |
| AAGTGAAACTAACAGAAACA+AGG | + | chr4_4:58416519-58416538 | None:intergenic | 30.0% | |
| GGAAGAATAAAGATTTGTGA+AGG | - | chr4_4:58417090-58417109 | Msa0690570:CDS | 30.0% | |
| ATCAGAAGGGATATATTTGA+GGG | - | chr4_4:58417281-58417300 | Msa0690570:intron | 30.0% | |
| ATGAGAAACCAACACTAAAA+AGG | + | chr4_4:58417608-58417627 | None:intergenic | 30.0% | |
| ! | ATTTTATTGAACTTTGCAGG+TGG | - | chr4_4:58417630-58417649 | Msa0690570:CDS | 30.0% |
| GATATTATTAGAGAGAATGG+AGG | - | chr4_4:58417690-58417709 | Msa0690570:intron | 30.0% | |
| TACTTGAAATTCAACTCTCT+TGG | + | chr4_4:58417767-58417786 | None:intergenic | 30.0% | |
| AATCAAGAATATACCTGATG+AGG | + | chr4_4:58417790-58417809 | None:intergenic | 30.0% | |
| GACTATTGTAAGAAGAATAG+TGG | - | chr4_4:58418145-58418164 | Msa0690570:CDS | 30.0% | |
| GTTTCATGTTTCCATTTCTA+AGG | - | chr4_4:58418378-58418397 | Msa0690570:intron | 30.0% | |
| ! | CTTTGTATTTTCTTTCACAC+AGG | - | chr4_4:58418448-58418467 | Msa0690570:intron | 30.0% |
| !! | GTTTCATGCTTTAAGATTGA+TGG | - | chr4_4:58418966-58418985 | Msa0690570:CDS | 30.0% |
| !! | ATGCTTTAAGATTGATGGTT+TGG | - | chr4_4:58418971-58418990 | Msa0690570:CDS | 30.0% |
| !! | TGCTTTAAGATTGATGGTTT+GGG | - | chr4_4:58418972-58418991 | Msa0690570:CDS | 30.0% |
| GTACTATGCTTAGAGAAATA+AGG | - | chr4_4:58419011-58419030 | Msa0690570:CDS | 30.0% | |
| ! | TAAAAGTGTATTGTGTATGC+TGG | - | chr4_4:58419054-58419073 | Msa0690570:exon | 30.0% |
| ACCTCAACAGTAACATGTTA+GGG | - | chr4_4:58416227-58416246 | Msa0690570:three_prime_UTR | 35.0% | |
| AACATGTTAGGGACATTGTT+TGG | - | chr4_4:58416238-58416257 | Msa0690570:three_prime_UTR | 35.0% | |
| AGCTCCAATAAATGTTCCAA+TGG | - | chr4_4:58416285-58416304 | Msa0690570:three_prime_UTR | 35.0% | |
| ! | AAATGTTCCAATGGTGATGT+TGG | - | chr4_4:58416294-58416313 | Msa0690570:three_prime_UTR | 35.0% |
| AGAGATAGCAGTTAAGAAGT+TGG | - | chr4_4:58416444-58416463 | Msa0690570:CDS | 35.0% | |
| TAGCAGTTAAGAAGTTGGAA+AGG | - | chr4_4:58416449-58416468 | Msa0690570:CDS | 35.0% | |
| !! | AAACTTATTTCTGGTTGGAC+CGG | + | chr4_4:58416826-58416845 | None:intergenic | 35.0% |
| CAGCTACTTGAAACTGAATT+AGG | + | chr4_4:58416970-58416989 | None:intergenic | 35.0% | |
| ! | CTAATTCAGTTTCAAGTAGC+TGG | - | chr4_4:58416968-58416987 | Msa0690570:intron | 35.0% |
| TAACTTAGAAAGTGGAATGC+AGG | - | chr4_4:58417068-58417087 | Msa0690570:CDS | 35.0% | |
| AACTTAGAAAGTGGAATGCA+GGG | - | chr4_4:58417069-58417088 | Msa0690570:CDS | 35.0% | |
| TGAAGGGAAGAATGTTGATA+GGG | - | chr4_4:58417107-58417126 | Msa0690570:CDS | 35.0% | |
| !! | GAAGAATGTTGATAGGGTTT+TGG | - | chr4_4:58417113-58417132 | Msa0690570:CDS | 35.0% |
| !! | CAGTTAATGATTTTGAGGGA+AGG | - | chr4_4:58417190-58417209 | Msa0690570:CDS | 35.0% |
| !! | TTAATGATTTTGAGGGAAGG+AGG | - | chr4_4:58417193-58417212 | Msa0690570:intron | 35.0% |
| CTCAAATATATCCCTTCTGA+TGG | + | chr4_4:58417282-58417301 | None:intergenic | 35.0% | |
| CATCAGAAGGGATATATTTG+AGG | - | chr4_4:58417280-58417299 | Msa0690570:intron | 35.0% | |
| GATAATAGTGTTCTTGCAAG+TGG | - | chr4_4:58417357-58417376 | Msa0690570:intron | 35.0% | |
| AAGCATTTGTATGGCATGTT+CGG | + | chr4_4:58417572-58417591 | None:intergenic | 35.0% | |
| ! | ATTCTGAGAAGGAAAATGGA+GGG | - | chr4_4:58417655-58417674 | Msa0690570:intron | 35.0% |
| AAAATGGAGGGATTGTCAAA+GGG | - | chr4_4:58417667-58417686 | Msa0690570:intron | 35.0% | |
| GGGGATATTATTAGAGAGAA+TGG | - | chr4_4:58417687-58417706 | Msa0690570:intron | 35.0% | |
| ! | TGAATTTCAAGTACCTCATC+AGG | - | chr4_4:58417774-58417793 | Msa0690570:intron | 35.0% |
| AAGATTGTCAGTGTCATCTT+AGG | + | chr4_4:58418017-58418036 | None:intergenic | 35.0% | |
| TAAGATGACACTGACAATCT+TGG | - | chr4_4:58418016-58418035 | Msa0690570:CDS | 35.0% | |
| !! | AGGAAAAAGTGTCATGTGAA+GGG | - | chr4_4:58418099-58418118 | Msa0690570:CDS | 35.0% |
| TTAGAGTTGAGACAGAACAA+TGG | - | chr4_4:58418174-58418193 | Msa0690570:CDS | 35.0% | |
| GATTTGAGAATCAGAATGCA+AGG | + | chr4_4:58418282-58418301 | None:intergenic | 35.0% | |
| CTTACATTCAACAACCTCTT+AGG | - | chr4_4:58418337-58418356 | Msa0690570:intron | 35.0% | |
| TTCAAAATCAACACAGAGCA+TGG | + | chr4_4:58418540-58418559 | None:intergenic | 35.0% | |
| AACTCTTTCTGTGTATCCAA+TGG | + | chr4_4:58418614-58418633 | None:intergenic | 35.0% | |
| ! | AATAGTAGTTTGCAGCTCAA+AGG | - | chr4_4:58418643-58418662 | Msa0690570:intron | 35.0% |
| AGAAAACAGAAAACACAGTG+AGG | - | chr4_4:58418685-58418704 | Msa0690570:intron | 35.0% | |
| ! | GAAAACACAGTGAGGTTTTA+AGG | - | chr4_4:58418693-58418712 | Msa0690570:intron | 35.0% |
| TTGTTTCCAATGTCTTGGAA+CGG | + | chr4_4:58418776-58418795 | None:intergenic | 35.0% | |
| AAGAAAGATGGCAATGCAAA+GGG | + | chr4_4:58418841-58418860 | None:intergenic | 35.0% | |
| TTACACGTCCTAACATTATC+AGG | - | chr4_4:58418917-58418936 | Msa0690570:CDS | 35.0% | |
| ! | TTATCTTCCTTTGAGAATGC+TGG | + | chr4_4:58419037-58419056 | None:intergenic | 35.0% |
| GACCTCAACAGTAACATGTT+AGG | - | chr4_4:58416226-58416245 | Msa0690570:three_prime_UTR | 40.0% | |
| TCCCTAACATGTTACTGTTG+AGG | + | chr4_4:58416231-58416250 | None:intergenic | 40.0% | |
| ACATTTATTGGAGCTTCAGC+AGG | + | chr4_4:58416280-58416299 | None:intergenic | 40.0% | |
| ! | GAGAGAGTTGTTATTGAGAG+AGG | - | chr4_4:58416337-58416356 | Msa0690570:three_prime_UTR | 40.0% |
| ! | GTTGTTATTGAGAGAGGTGA+TGG | - | chr4_4:58416343-58416362 | Msa0690570:three_prime_UTR | 40.0% |
| AGAGAAGTGGAAGTTTCAAG+CGG | - | chr4_4:58416381-58416400 | Msa0690570:three_prime_UTR | 40.0% | |
| !! | TGAGTGTAACTTGTTGAGGA+TGG | - | chr4_4:58416417-58416436 | Msa0690570:CDS | 40.0% |
| AAGCTATTCTTGAGAGCTTG+TGG | - | chr4_4:58416698-58416717 | Msa0690570:CDS | 40.0% | |
| GTGCACAAGCTCAAATATAC+CGG | - | chr4_4:58416804-58416823 | Msa0690570:CDS | 40.0% | |
| GTAGCTGATGTATCATGAGT+TGG | - | chr4_4:58416944-58416963 | Msa0690570:intron | 40.0% | |
| GTGAAGGGAAGAATGTTGAT+AGG | - | chr4_4:58417106-58417125 | Msa0690570:CDS | 40.0% | |
| TTTGAGGGAGTTTGAAGAGA+TGG | - | chr4_4:58417296-58417315 | Msa0690570:intron | 40.0% | |
| ! | GGAGATTCTGAGAAGGAAAA+TGG | - | chr4_4:58417651-58417670 | Msa0690570:intron | 40.0% |
| ! | GATTCTGAGAAGGAAAATGG+AGG | - | chr4_4:58417654-58417673 | Msa0690570:intron | 40.0% |
| GAAAATGGAGGGATTGTCAA+AGG | - | chr4_4:58417666-58417685 | Msa0690570:intron | 40.0% | |
| AAATGGAGGGATTGTCAAAG+GGG | - | chr4_4:58417668-58417687 | Msa0690570:intron | 40.0% | |
| !! | CAGGAAAAAGTGTCATGTGA+AGG | - | chr4_4:58418098-58418117 | Msa0690570:CDS | 40.0% |
| GAAGTAAACACAGTCCTAAG+AGG | + | chr4_4:58418354-58418373 | None:intergenic | 40.0% | |
| ATGTTGGAGCCGTTTATTTC+TGG | - | chr4_4:58418406-58418425 | Msa0690570:intron | 40.0% | |
| !!! | CACAGTGAGGTTTTAAGGAA+CGG | - | chr4_4:58418698-58418717 | Msa0690570:intron | 40.0% |
| AGAAAAACACATGCTGCTAG+AGG | - | chr4_4:58418725-58418744 | Msa0690570:intron | 40.0% | |
| ! | ACGAGTTGTTTCCAATGTCT+TGG | + | chr4_4:58418781-58418800 | None:intergenic | 40.0% |
| GAAGAAAGATGGCAATGCAA+AGG | + | chr4_4:58418842-58418861 | None:intergenic | 40.0% | |
| TCTCAGCAGTTGAAGAAAGA+TGG | + | chr4_4:58418853-58418872 | None:intergenic | 40.0% | |
| GTCCTAACATTATCAGGTGA+AGG | - | chr4_4:58418923-58418942 | Msa0690570:CDS | 40.0% | |
| ! | CTCCTTCACCTGATAATGTT+AGG | + | chr4_4:58418928-58418947 | None:intergenic | 40.0% |
| CTAACATTATCAGGTGAAGG+AGG | - | chr4_4:58418926-58418945 | Msa0690570:CDS | 40.0% | |
| AATAAGGCCAGCATTCTCAA+AGG | - | chr4_4:58419027-58419046 | Msa0690570:CDS | 40.0% | |
| !! | TGTATGCTGGCTCGATATTT+AGG | - | chr4_4:58419067-58419086 | Msa0690570:exon | 40.0% |
| !! | GTATGCTGGCTCGATATTTA+GGG | - | chr4_4:58419068-58419087 | Msa0690570:exon | 40.0% |
| ! | CTCGATATTTAGGGTGTGTT+TGG | - | chr4_4:58419077-58419096 | Msa0690570:five_prime_UTR | 40.0% |
| CAACGATCCAACATCACCAT+TGG | + | chr4_4:58416304-58416323 | None:intergenic | 45.0% | |
| TGTTGGATCGTTGTGAAGAG+AGG | - | chr4_4:58416311-58416330 | Msa0690570:three_prime_UTR | 45.0% | |
| !! | GAGCTGAGTGTAACTTGTTG+AGG | - | chr4_4:58416413-58416432 | Msa0690570:CDS | 45.0% |
| GGAAAGGACTCGTTCAAAGA+TGG | - | chr4_4:58416465-58416484 | Msa0690570:CDS | 45.0% | |
| GGACTCGTTCAAAGATGGAA+CGG | - | chr4_4:58416470-58416489 | Msa0690570:CDS | 45.0% | |
| !! | AAGCACTGGTGAGACTGTTT+GGG | + | chr4_4:58416778-58416797 | None:intergenic | 45.0% |
| !! | TAAGCACTGGTGAGACTGTT+TGG | + | chr4_4:58416779-58416798 | None:intergenic | 45.0% |
| ! | TTGTGCACTGACATAAGCAC+TGG | + | chr4_4:58416792-58416811 | None:intergenic | 45.0% |
| AAGTTTCGGTTCTGCAGAGA+CGG | - | chr4_4:58417238-58417257 | Msa0690570:intron | 45.0% | |
| TGAAGCAGAACTACTAGCAG+TGG | + | chr4_4:58417740-58417759 | None:intergenic | 45.0% | |
| ! | TGCGTGTTGACAAATCATGC+AGG | - | chr4_4:58418079-58418098 | Msa0690570:CDS | 45.0% |
| TCTTGCAATGTCCTGAACAC+AGG | + | chr4_4:58418127-58418146 | None:intergenic | 45.0% | |
| AGAACAATGGTCCCAAATGC+AGG | - | chr4_4:58418187-58418206 | Msa0690570:CDS | 45.0% | |
| ACCTAGCATCTCCTGCATTT+GGG | + | chr4_4:58418201-58418220 | None:intergenic | 45.0% | |
| !! | CAGGAAGCGCCAGAAATAAA+CGG | + | chr4_4:58418418-58418437 | None:intergenic | 45.0% |
| TAAGGGGACGAAATGTCCAT+CGG | - | chr4_4:58418586-58418605 | Msa0690570:intron | 45.0% | |
| !! | GAAATGTCCATCGGTTCCAT+TGG | - | chr4_4:58418595-58418614 | Msa0690570:intron | 45.0% |
| TGTGTATCCAATGGAACCGA+TGG | + | chr4_4:58418605-58418624 | None:intergenic | 45.0% | |
| AAAACACATGCTGCTAGAGG+TGG | - | chr4_4:58418728-58418747 | Msa0690570:intron | 45.0% | |
| ACAACTCGTCATTGTTGACG+AGG | - | chr4_4:58418792-58418811 | Msa0690570:CDS | 45.0% | |
| TTGTTGACGAGGCAGCAAAA+TGG | - | chr4_4:58418803-58418822 | Msa0690570:CDS | 45.0% | |
| ! | AAGGAGGCACGCAATGATTT+AGG | - | chr4_4:58418942-58418961 | Msa0690570:CDS | 45.0% |
| TGTTACTGTTGAGGTCCCTC+CGG | + | chr4_4:58416222-58416241 | None:intergenic | 50.0% | |
| TGGATCGTTGTGAAGAGAGG+AGG | - | chr4_4:58416314-58416333 | Msa0690570:three_prime_UTR | 50.0% | |
| GGATCGTTGTGAAGAGAGGA+GGG | - | chr4_4:58416315-58416334 | Msa0690570:three_prime_UTR | 50.0% | |
| !! | GAGAGGTGATGGATCGTTGT+TGG | - | chr4_4:58416354-58416373 | Msa0690570:three_prime_UTR | 50.0% |
| !! | AGGTGATGGATCGTTGTTGG+AGG | - | chr4_4:58416357-58416376 | Msa0690570:three_prime_UTR | 50.0% |
| CGTTGTTGGAGGAAGAGAAG+TGG | - | chr4_4:58416368-58416387 | Msa0690570:three_prime_UTR | 50.0% | |
| AAGATCGGAGGACCATCAGA+AGG | - | chr4_4:58417267-58417286 | Msa0690570:intron | 50.0% | |
| AGATCGGAGGACCATCAGAA+GGG | - | chr4_4:58417268-58417287 | Msa0690570:intron | 50.0% | |
| ! | TGCAGGTGGAGATTCTGAGA+AGG | - | chr4_4:58417644-58417663 | Msa0690570:intron | 50.0% |
| TGTGAAGGGAACCTGTGTTC+AGG | - | chr4_4:58418113-58418132 | Msa0690570:CDS | 50.0% | |
| TCCCAAATGCAGGAGATGCT+AGG | - | chr4_4:58418197-58418216 | Msa0690570:CDS | 50.0% | |
| GACCTAGCATCTCCTGCATT+TGG | + | chr4_4:58418202-58418221 | None:intergenic | 50.0% | |
| AATGCAGGAGATGCTAGGTC+AGG | - | chr4_4:58418202-58418221 | Msa0690570:intron | 50.0% | |
| GGAAGAGATGGAAGAACTGC+AGG | - | chr4_4:58418229-58418248 | Msa0690570:intron | 50.0% | |
| TGCAGGCTTCACGAGATTTC+TGG | - | chr4_4:58418246-58418265 | Msa0690570:intron | 50.0% | |
| CTTTCACACAGGTGCAAGAG+TGG | - | chr4_4:58418459-58418478 | Msa0690570:intron | 50.0% | |
| TCTTGGAACGGCATTCGCTT+TGG | + | chr4_4:58418764-58418783 | None:intergenic | 50.0% | |
| CGAATGCCGTTCCAAGACAT+TGG | - | chr4_4:58418767-58418786 | Msa0690570:intron | 50.0% | |
| TTACTGTTGAGGTCCCTCCG+GGG | + | chr4_4:58416220-58416239 | None:intergenic | 55.0% | |
| GTTACTGTTGAGGTCCCTCC+GGG | + | chr4_4:58416221-58416240 | None:intergenic | 55.0% | |
| CAGAGACGGCTCGAGAAGAT+CGG | - | chr4_4:58417252-58417271 | Msa0690570:intron | 55.0% | |
| AGGAGATGCTAGGTCAGGTG+AGG | - | chr4_4:58418207-58418226 | Msa0690570:intron | 55.0% | |
| GGAGATGCTAGGTCAGGTGA+GGG | - | chr4_4:58418208-58418227 | Msa0690570:intron | 55.0% | |
| AGGTCAGGTGAGGGAAGAGA+TGG | - | chr4_4:58418217-58418236 | Msa0690570:intron | 55.0% | |
| ATGGGACTCTCCGACGAGGA+CGG | + | chr4_4:58416186-58416205 | None:intergenic | 60.0% | |
| GAAGATGGGACTCTCCGACG+AGG | + | chr4_4:58416190-58416209 | None:intergenic | 60.0% | |
| AGACGGCTCGAGAAGATCGG+AGG | - | chr4_4:58417255-58417274 | Msa0690570:intron | 60.0% | |
| TCCCATCTTCCTCCGCTCCC+CGG | - | chr4_4:58416200-58416219 | Msa0690570:three_prime_UTR | 65.0% | |
| TCCGGGGAGCGGAGGAAGAT+GGG | + | chr4_4:58416204-58416223 | None:intergenic | 65.0% | |
| ATCTTCCTCCGCTCCCCGGA+GGG | - | chr4_4:58416204-58416223 | Msa0690570:three_prime_UTR | 65.0% | |
| ACTCTCCGACGAGGACGGCG+AGG | + | chr4_4:58416181-58416200 | None:intergenic | 70.0% | |
| CTCCGGGGAGCGGAGGAAGA+TGG | + | chr4_4:58416205-58416224 | None:intergenic | 70.0% | |
| CATCTTCCTCCGCTCCCCGG+AGG | - | chr4_4:58416203-58416222 | Msa0690570:three_prime_UTR | 70.0% | |
| GTTGAGGTCCCTCCGGGGAG+CGG | + | chr4_4:58416215-58416234 | None:intergenic | 70.0% | |
| ! | GAGGTCCCTCCGGGGAGCGG+AGG | + | chr4_4:58416212-58416231 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 58416178 | 58419132 | 58416178 | ID=Msa0690570;Name=Msa0690570 |
| chr4_4 | mRNA | 58416178 | 58419132 | 58416178 | ID=Msa0690570-mRNA-1;Parent=Msa0690570;Name=Msa0690570-mRNA-1;_AED=0.14;_eAED=0.14;_QI=63|1|1|1|1|1|5|234|459 |
| chr4_4 | exon | 58416178 | 58416840 | 58416178 | ID=Msa0690570-mRNA-1:exon:15714;Parent=Msa0690570-mRNA-1 |
| chr4_4 | exon | 58416991 | 58417209 | 58416991 | ID=Msa0690570-mRNA-1:exon:15713;Parent=Msa0690570-mRNA-1 |
| chr4_4 | exon | 58417515 | 58417661 | 58417515 | ID=Msa0690570-mRNA-1:exon:15712;Parent=Msa0690570-mRNA-1 |
| chr4_4 | exon | 58417921 | 58418220 | 58417921 | ID=Msa0690570-mRNA-1:exon:15711;Parent=Msa0690570-mRNA-1 |
| chr4_4 | exon | 58418785 | 58419132 | 58418785 | ID=Msa0690570-mRNA-1:exon:15710;Parent=Msa0690570-mRNA-1 |
| chr4_4 | five_prime_UTR | 58419070 | 58419132 | 58419070 | ID=Msa0690570-mRNA-1:five_prime_utr;Parent=Msa0690570-mRNA-1 |
| chr4_4 | CDS | 58418785 | 58419069 | 58418785 | ID=Msa0690570-mRNA-1:cds;Parent=Msa0690570-mRNA-1 |
| chr4_4 | CDS | 58417921 | 58418220 | 58417921 | ID=Msa0690570-mRNA-1:cds;Parent=Msa0690570-mRNA-1 |
| chr4_4 | CDS | 58417515 | 58417661 | 58417515 | ID=Msa0690570-mRNA-1:cds;Parent=Msa0690570-mRNA-1 |
| chr4_4 | CDS | 58416991 | 58417209 | 58416991 | ID=Msa0690570-mRNA-1:cds;Parent=Msa0690570-mRNA-1 |
| chr4_4 | CDS | 58416412 | 58416840 | 58416412 | ID=Msa0690570-mRNA-1:cds;Parent=Msa0690570-mRNA-1 |
| chr4_4 | three_prime_UTR | 58416178 | 58416411 | 58416178 | ID=Msa0690570-mRNA-1:three_prime_utr;Parent=Msa0690570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
