Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613800 | XP_003608372.2 | 97.579 | 537 | 13 | 0 | 1 | 537 | 1 | 537 | 0.0 | 1087 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613800 | sp|Q0WM29|MMSA_ARATH | 77.567 | 526 | 115 | 2 | 12 | 536 | 83 | 606 | 0.0 | 859 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0613800 | Msa0617040 | 0.817132 | 3.864316e-52 | -8.615850e-47 |
| Msa0613800 | Msa0638430 | 0.930954 | 7.702565e-94 | -8.615850e-47 |
| Msa0613800 | Msa0652700 | 0.802807 | 4.707124e-49 | -8.615850e-47 |
| Msa0613800 | Msa0656100 | 0.816895 | 4.367775e-52 | -8.615850e-47 |
| Msa0613800 | Msa1217950 | 0.848325 | 6.587057e-60 | -8.615850e-47 |
| Msa0613800 | Msa1219790 | 0.846848 | 1.678757e-59 | -8.615850e-47 |
| Msa0613800 | Msa1267080 | 0.848937 | 4.457413e-60 | -8.615850e-47 |
| Msa0613800 | Msa1401550 | 0.845627 | 3.609097e-59 | -8.615850e-47 |
| Msa0476070 | Msa0613800 | 0.836167 | 1.096735e-56 | -8.615850e-47 |
| Msa0481100 | Msa0613800 | 0.844220 | 8.650138e-59 | -8.615850e-47 |
| Msa0268070 | Msa0613800 | 0.843921 | 1.040935e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613800 | MtrunA17_Chr4g0049641 | 97.579 | 537 | 13 | 0 | 1 | 537 | 1 | 537 | 0.0 | 1087 |
| Msa0613800 | MtrunA17_Chr2g0279751 | 84.436 | 514 | 74 | 1 | 24 | 537 | 3 | 510 | 0.0 | 911 |
| Msa0613800 | MtrunA17_Chr2g0310091 | 30.435 | 506 | 338 | 9 | 14 | 514 | 33 | 529 | 4.92e-67 | 226 |
| Msa0613800 | MtrunA17_Chr8g0390631 | 32.231 | 484 | 298 | 14 | 45 | 514 | 17 | 484 | 7.19e-60 | 206 |
| Msa0613800 | MtrunA17_Chr6g0485301 | 31.601 | 481 | 305 | 11 | 45 | 514 | 25 | 492 | 1.44e-59 | 205 |
| Msa0613800 | MtrunA17_Chr3g0117861 | 32.617 | 512 | 315 | 14 | 25 | 520 | 41 | 538 | 2.14e-58 | 203 |
| Msa0613800 | MtrunA17_Chr6g0485311 | 32.377 | 488 | 308 | 12 | 36 | 514 | 16 | 490 | 2.63e-58 | 201 |
| Msa0613800 | MtrunA17_Chr8g0390651 | 31.352 | 488 | 313 | 12 | 36 | 514 | 19 | 493 | 2.78e-58 | 201 |
| Msa0613800 | MtrunA17_Chr8g0365221 | 31.021 | 519 | 315 | 14 | 25 | 520 | 39 | 537 | 7.76e-57 | 199 |
| Msa0613800 | MtrunA17_Chr4g0059221 | 32.112 | 464 | 294 | 10 | 24 | 474 | 42 | 497 | 3.19e-55 | 194 |
| Msa0613800 | MtrunA17_Chr3g0118121 | 27.615 | 478 | 320 | 10 | 59 | 518 | 25 | 494 | 8.20e-53 | 187 |
| Msa0613800 | MtrunA17_Chr3g0118081 | 26.735 | 490 | 316 | 9 | 59 | 524 | 55 | 525 | 1.61e-47 | 173 |
| Msa0613800 | MtrunA17_Chr4g0059521 | 28.601 | 479 | 321 | 9 | 59 | 524 | 25 | 495 | 4.31e-47 | 171 |
| Msa0613800 | MtrunA17_Chr1g0149961 | 27.789 | 475 | 321 | 9 | 48 | 513 | 22 | 483 | 5.64e-47 | 171 |
| Msa0613800 | MtrunA17_Chr4g0074171 | 27.254 | 488 | 326 | 11 | 37 | 513 | 14 | 483 | 1.13e-45 | 167 |
| Msa0613800 | MtrunA17_Chr2g0300801 | 25.918 | 463 | 325 | 7 | 42 | 495 | 22 | 475 | 2.27e-41 | 155 |
| Msa0613800 | MtrunA17_Chr2g0294411 | 24.651 | 430 | 313 | 7 | 54 | 474 | 61 | 488 | 1.09e-26 | 114 |
| Msa0613800 | MtrunA17_Chr8g0384741 | 27.479 | 353 | 238 | 10 | 174 | 521 | 166 | 505 | 3.33e-22 | 100 |
| Msa0613800 | MtrunA17_Chr8g0372381 | 25.558 | 403 | 281 | 10 | 80 | 474 | 8 | 399 | 6.09e-22 | 99.0 |
| Msa0613800 | MtrunA17_Chr1g0159811 | 27.273 | 308 | 203 | 8 | 174 | 474 | 113 | 406 | 1.68e-19 | 91.7 |
| Msa0613800 | MtrunA17_Chr3g0124811 | 26.885 | 305 | 208 | 8 | 174 | 474 | 115 | 408 | 2.15e-18 | 88.2 |
| Msa0613800 | MtrunA17_Chr2g0328781 | 27.097 | 310 | 204 | 10 | 174 | 474 | 117 | 413 | 2.35e-17 | 85.1 |
| Msa0613800 | MtrunA17_Chr4g0032441 | 26.198 | 313 | 203 | 9 | 174 | 474 | 102 | 398 | 8.29e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0613800 | AT2G14170.1 | 77.567 | 526 | 115 | 2 | 12 | 536 | 83 | 606 | 0.0 | 859 |
| Msa0613800 | AT2G14170.2 | 80.444 | 496 | 95 | 1 | 41 | 536 | 4 | 497 | 0.0 | 848 |
| Msa0613800 | AT2G14170.3 | 78.659 | 492 | 104 | 1 | 12 | 502 | 83 | 574 | 0.0 | 815 |
| Msa0613800 | AT1G79440.1 | 32.568 | 479 | 308 | 8 | 41 | 514 | 52 | 520 | 1.14e-59 | 206 |
| Msa0613800 | AT1G23800.1 | 31.687 | 486 | 310 | 13 | 45 | 520 | 57 | 530 | 8.67e-56 | 196 |
| Msa0613800 | AT3G24503.1 | 29.339 | 484 | 327 | 9 | 45 | 521 | 23 | 498 | 9.01e-56 | 195 |
| Msa0613800 | AT3G48000.1 | 30.297 | 505 | 326 | 11 | 22 | 514 | 38 | 528 | 1.25e-53 | 190 |
| Msa0613800 | AT3G48170.1 | 28.659 | 492 | 332 | 9 | 45 | 524 | 11 | 495 | 2.13e-53 | 189 |
| Msa0613800 | AT1G74920.1 | 28.719 | 484 | 324 | 11 | 45 | 515 | 11 | 486 | 3.66e-51 | 182 |
| Msa0613800 | AT1G74920.2 | 28.512 | 484 | 320 | 12 | 45 | 515 | 11 | 481 | 5.06e-48 | 174 |
| Msa0613800 | AT2G24270.3 | 26.415 | 477 | 325 | 10 | 48 | 513 | 22 | 483 | 4.96e-45 | 166 |
| Msa0613800 | AT2G24270.1 | 26.415 | 477 | 325 | 10 | 48 | 513 | 22 | 483 | 4.96e-45 | 166 |
| Msa0613800 | AT2G24270.4 | 26.415 | 477 | 325 | 10 | 48 | 513 | 22 | 483 | 6.57e-45 | 166 |
| Msa0613800 | AT2G24270.2 | 26.255 | 518 | 350 | 12 | 7 | 513 | 27 | 523 | 6.71e-45 | 166 |
| Msa0613800 | AT1G54100.2 | 25.000 | 448 | 318 | 6 | 58 | 495 | 35 | 474 | 1.44e-41 | 156 |
| Msa0613800 | AT1G54100.1 | 25.000 | 448 | 318 | 6 | 58 | 495 | 35 | 474 | 1.44e-41 | 156 |
| Msa0613800 | AT1G23800.2 | 34.076 | 314 | 194 | 9 | 45 | 350 | 57 | 365 | 1.39e-35 | 138 |
| Msa0613800 | AT3G66658.1 | 23.953 | 430 | 316 | 6 | 54 | 474 | 61 | 488 | 2.04e-28 | 119 |
| Msa0613800 | AT3G66658.2 | 23.953 | 430 | 316 | 6 | 54 | 474 | 61 | 488 | 2.43e-28 | 119 |
| Msa0613800 | AT1G44170.3 | 25.429 | 350 | 241 | 11 | 174 | 517 | 46 | 381 | 1.40e-21 | 97.8 |
| Msa0613800 | AT1G44170.1 | 25.429 | 350 | 241 | 11 | 174 | 517 | 109 | 444 | 1.76e-21 | 98.2 |
| Msa0613800 | AT1G44170.2 | 25.429 | 350 | 241 | 11 | 174 | 517 | 109 | 444 | 1.76e-21 | 98.2 |
| Msa0613800 | AT4G36250.1 | 25.734 | 443 | 298 | 13 | 89 | 516 | 16 | 442 | 1.90e-19 | 91.7 |
| Msa0613800 | AT4G34240.3 | 27.778 | 306 | 204 | 9 | 174 | 474 | 30 | 323 | 7.03e-18 | 86.3 |
| Msa0613800 | AT4G34240.4 | 24.939 | 409 | 271 | 14 | 79 | 474 | 65 | 450 | 1.16e-17 | 86.7 |
| Msa0613800 | AT4G34240.1 | 24.939 | 409 | 271 | 14 | 79 | 474 | 80 | 465 | 1.18e-17 | 86.7 |
Find 151 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGTATGGATATATTATTTA+TGG | 0.111055 | 4_2:-62712393 | None:intergenic |
| AAATTATACACATGACTTTC+TGG | 0.135571 | 4_2:-62712226 | None:intergenic |
| CCAAAATGAGGGTTTATATT+AGG | 0.199012 | 4_2:+62712362 | Msa0613800:three_prime_UTR |
| AAAAGGGTTCCCAATCTTAT+TGG | 0.207386 | 4_2:+62707899 | Msa0613800:CDS |
| ATTTGGTGTGCAGTCTAATA+TGG | 0.210485 | 4_2:+62709682 | Msa0613800:intron |
| GCTTTAGTTGCTGCTGGTTT+TGG | 0.210605 | 4_2:+62709761 | Msa0613800:CDS |
| CTTCCACTGATCGCTATAAA+AGG | 0.210956 | 4_2:+62707882 | Msa0613800:CDS |
| CCTAATATAAACCCTCATTT+TGG | 0.222450 | 4_2:-62712362 | None:intergenic |
| GCTTCTATATTTACTACTTC+TGG | 0.230981 | 4_2:+62711451 | Msa0613800:CDS |
| TATGGTGTTTGAAGAAATTA+AGG | 0.245918 | 4_2:-62707623 | None:intergenic |
| TTCTATAATGCTTGCAGAAT+TGG | 0.246663 | 4_2:+62708986 | Msa0613800:CDS |
| GTTTCAGTTTATTATATATA+AGG | 0.269729 | 4_2:-62707528 | None:intergenic |
| TGTTGAATTGCAGGCAAATC+AGG | 0.276648 | 4_2:+62712097 | Msa0613800:intron |
| AAAGGGTTCCCAATCTTATT+GGG | 0.284247 | 4_2:+62707900 | Msa0613800:CDS |
| GGAGATGTGTTTCGTGGTTT+AGG | 0.290732 | 4_2:+62708413 | Msa0613800:CDS |
| CAAACCTGTTTGCTGATAAC+TGG | 0.309419 | 4_2:-62710301 | None:intergenic |
| AATATAATATAGAAGGAATT+GGG | 0.311103 | 4_2:-62712337 | None:intergenic |
| GGCAACAAGGCGTCATTTGC+TGG | 0.317826 | 4_2:+62711760 | Msa0613800:CDS |
| TTTGGAAAATATAATATAGA+AGG | 0.336334 | 4_2:-62712344 | None:intergenic |
| AAATATAATATAGAAGGAAT+TGG | 0.336456 | 4_2:-62712338 | None:intergenic |
| AAATAATGGAATAAATTAAT+AGG | 0.336901 | 4_2:+62707438 | Msa0613800:five_prime_UTR |
| GAATTTGATACGAAAGGATT+TGG | 0.341238 | 4_2:+62707466 | Msa0613800:five_prime_UTR |
| GGATATATTATTTATGGATT+CGG | 0.341738 | 4_2:-62712387 | None:intergenic |
| ACACGTTGGCGCGTCGTAAC+TGG | 0.345070 | 4_2:-62708168 | None:intergenic |
| ACTCTTCAATAAAATGTCAT+AGG | 0.354387 | 4_2:+62712270 | Msa0613800:three_prime_UTR |
| CTTCAGTGTCTTTCCTTGTT+CGG | 0.357016 | 4_2:-62708381 | None:intergenic |
| AGCGTTTACTTTAAGAGCTT+TGG | 0.358538 | 4_2:-62710251 | None:intergenic |
| ATGCCTCAGATCTCTGCTTT+CGG | 0.359917 | 4_2:+62707827 | Msa0613800:CDS |
| ACCTCCATGAAAAGAAGAAC+TGG | 0.370811 | 4_2:-62711186 | None:intergenic |
| ACTAGGAAAGGAAAAGAATA+TGG | 0.382821 | 4_2:-62707641 | None:intergenic |
| GTGCACAGATTAGTTCAATC+TGG | 0.390956 | 4_2:+62710446 | Msa0613800:CDS |
| ATTGGAGCCAACAAATGATA+TGG | 0.397690 | 4_2:-62709331 | None:intergenic |
| AATGGCAAAGGAACTGGAAT+AGG | 0.399481 | 4_2:-62711724 | None:intergenic |
| ATTAAAGCCATATCATTTGT+TGG | 0.414988 | 4_2:+62709324 | Msa0613800:CDS |
| GTGGAACATGCTTGTGGAAT+GGG | 0.416900 | 4_2:+62708548 | Msa0613800:CDS |
| ATCCACAATGGAATCATTGC+AGG | 0.418409 | 4_2:-62708677 | None:intergenic |
| AGCTAAAGGGAAGCGTGTTC+AGG | 0.424616 | 4_2:+62709583 | Msa0613800:CDS |
| GGCGCCAGACTACTGCTTGA+TGG | 0.427124 | 4_2:+62710479 | Msa0613800:CDS |
| GCAGAATTGGCACTGGAAGC+TGG | 0.430921 | 4_2:+62708999 | Msa0613800:CDS |
| TGGTCCAGTTATCAGCAAAC+AGG | 0.440028 | 4_2:+62710297 | Msa0613800:CDS |
| GTAAATGCTTTAGTTGCTGC+TGG | 0.441142 | 4_2:+62709755 | Msa0613800:CDS |
| TCACCTGGGTCTTTCTCTGA+TGG | 0.443595 | 4_2:-62708743 | None:intergenic |
| AAATTGCCAGATTCATATCC+TGG | 0.446066 | 4_2:-62710987 | None:intergenic |
| TCTTCCATCAAGCAGTAGTC+TGG | 0.446575 | 4_2:-62710483 | None:intergenic |
| TAGGTCCCAGGATATGAATC+TGG | 0.446613 | 4_2:+62710981 | Msa0613800:intron |
| GACTGAGATTGAGGCTGGGC+AGG | 0.446706 | 4_2:+62711495 | Msa0613800:CDS |
| CTGACTCAGCTTCTCGTGTC+TGG | 0.448314 | 4_2:+62707584 | Msa0613800:five_prime_UTR |
| AAATTAAGGATGATACAGTT+TGG | 0.448322 | 4_2:-62707609 | None:intergenic |
| TTTACATCATTTAGAGGTGG+TGG | 0.451994 | 4_2:+62708529 | Msa0613800:intron |
| GGTGTCTTAAATGTTGTTCA+TGG | 0.452942 | 4_2:+62709032 | Msa0613800:CDS |
| TTTCAGACTGAGATTGAGGC+TGG | 0.456700 | 4_2:+62711490 | Msa0613800:CDS |
| GTTGAGCCGCTGTTGAGAAA+TGG | 0.457193 | 4_2:-62707856 | None:intergenic |
| AGCTGCTGGGCAAAGGTGCA+TGG | 0.458588 | 4_2:+62709784 | Msa0613800:CDS |
| ACGGAACCTGATGCAGATCT+TGG | 0.459081 | 4_2:+62710277 | Msa0613800:CDS |
| TTTGGTGTGCAGTCTAATAT+GGG | 0.459672 | 4_2:+62709683 | Msa0613800:intron |
| GGAGCTTATACGCAGAGATA+TGG | 0.460147 | 4_2:+62708206 | Msa0613800:CDS |
| TGCTGTATCTGCAGCTAAGA+AGG | 0.460432 | 4_2:+62708122 | Msa0613800:CDS |
| TATTCAAGAGCAGCAGCTAA+AGG | 0.462757 | 4_2:+62709569 | Msa0613800:CDS |
| ATCCCAGCACAAACACCAAT+TGG | 0.470380 | 4_2:-62708638 | None:intergenic |
| ATTCAAGAGCAGCAGCTAAA+GGG | 0.475145 | 4_2:+62709570 | Msa0613800:CDS |
| AACTCATCATCCGTAGTCAA+TGG | 0.477816 | 4_2:-62708093 | None:intergenic |
| CTACTTCTGGTGTTGCTGCT+AGG | 0.478222 | 4_2:+62711464 | Msa0613800:CDS |
| GAACCAATTGGTGTTTGTGC+TGG | 0.479759 | 4_2:+62708635 | Msa0613800:CDS |
| TGGAATGGGAACTCTACAAA+TGG | 0.483756 | 4_2:+62708562 | Msa0613800:CDS |
| AAAGCTGCGACATCCTGGTT+TGG | 0.485384 | 4_2:-62707680 | None:intergenic |
| GCTGTGTTGTTTGTGCTACT+AGG | 0.486455 | 4_2:-62707658 | None:intergenic |
| CTGGAAGCTGGTTTGCCTGA+GGG | 0.487867 | 4_2:+62709011 | Msa0613800:CDS |
| CACTTACAGGGTTTAAAACA+TGG | 0.492044 | 4_2:-62707958 | None:intergenic |
| TGCACAGATTAGTTCAATCT+GGG | 0.495573 | 4_2:+62710447 | Msa0613800:CDS |
| GAAATTTCAGACTGAGATTG+AGG | 0.497380 | 4_2:+62711486 | Msa0613800:CDS |
| GGAATGGGAACTCTACAAAT+GGG | 0.498031 | 4_2:+62708563 | Msa0613800:CDS |
| TATCTCTGCGTATAAGCTCC+TGG | 0.499342 | 4_2:-62708203 | None:intergenic |
| TTATCTTCAGGCTGATAGCT+TGG | 0.499596 | 4_2:+62711302 | Msa0613800:intron |
| AATATCGTCATCATCACAAA+TGG | 0.501231 | 4_2:-62709304 | None:intergenic |
| TTATAGCGATCAGTGGAAGA+TGG | 0.504808 | 4_2:-62707878 | None:intergenic |
| GTTGAATTGCAGGCAAATCA+GGG | 0.506899 | 4_2:+62712098 | Msa0613800:intron |
| ACGTGTTATGTTGAAGCTCC+AGG | 0.512753 | 4_2:+62708185 | Msa0613800:CDS |
| AGTGATATTTGATAAGATAG+TGG | 0.516177 | 4_2:-62711018 | None:intergenic |
| AATAGAAAGCTGCGACATCC+TGG | 0.517117 | 4_2:-62707685 | None:intergenic |
| ATAAGGACGAATCAATTGAC+AGG | 0.521127 | 4_2:-62707511 | None:intergenic |
| TTCCACTGATCGCTATAAAA+GGG | 0.522326 | 4_2:+62707883 | Msa0613800:CDS |
| ATAAGACAAACTTACAACAT+TGG | 0.522934 | 4_2:-62709349 | None:intergenic |
| TTGAGCCGCTGTTGAGAAAT+GGG | 0.523015 | 4_2:-62707855 | None:intergenic |
| GTGATATTTGATAAGATAGT+GGG | 0.524228 | 4_2:-62711017 | None:intergenic |
| GTAGTTGAATTTGATACGAA+AGG | 0.524559 | 4_2:+62707460 | Msa0613800:five_prime_UTR |
| ACTGGAAGCTGGTTTGCCTG+AGG | 0.526090 | 4_2:+62709010 | Msa0613800:CDS |
| AACCAATTGGTGTTTGTGCT+GGG | 0.527195 | 4_2:+62708636 | Msa0613800:CDS |
| GTAGCATCAACATTTGCGTC+TGG | 0.531607 | 4_2:-62709731 | None:intergenic |
| GCTCAAGGAGATGTGTTTCG+TGG | 0.534549 | 4_2:+62708407 | Msa0613800:CDS |
| TCGTGGGAGGTTCACAAGCA+TGG | 0.539389 | 4_2:+62709825 | Msa0613800:CDS |
| GCTTGATGGAAGAAGTATAG+TGG | 0.540813 | 4_2:+62710493 | Msa0613800:CDS |
| AATGCTTGCAGAATTGGCAC+TGG | 0.543066 | 4_2:+62708992 | Msa0613800:CDS |
| CAGTGGAAGGATTCAGTTGG+CGG | 0.545920 | 4_2:+62712157 | Msa0613800:CDS |
| GGTGGAACATGCTTGTGGAA+TGG | 0.548358 | 4_2:+62708547 | Msa0613800:CDS |
| TTCGCAAGTTCCATTGACTA+CGG | 0.550198 | 4_2:+62708083 | Msa0613800:CDS |
| CAGTGTCTTTCCTTGTTCGG+TGG | 0.551950 | 4_2:-62708378 | None:intergenic |
| CTAAGAAGGCATTTCCGTCA+TGG | 0.551971 | 4_2:+62708136 | Msa0613800:CDS |
| ACTGGACCAAGATCTGCATC+AGG | 0.552636 | 4_2:-62710283 | None:intergenic |
| GTTCAATCTGGGGTCGAAAG+TGG | 0.552916 | 4_2:+62710458 | Msa0613800:CDS |
| AACAATAACTCAGCAGTGGA+AGG | 0.553106 | 4_2:+62712144 | Msa0613800:CDS |
| GCTGGCGATCTCAATTTCTA+CGG | 0.557024 | 4_2:+62711778 | Msa0613800:CDS |
| CTTAATATAACCACCGAACA+AGG | 0.558754 | 4_2:+62708368 | Msa0613800:CDS |
| TGCCGACATGGATTGCTACA+AGG | 0.559361 | 4_2:+62711040 | Msa0613800:CDS |
| AAGGGTTCCCAATCTTATTG+GGG | 0.562322 | 4_2:+62707901 | Msa0613800:CDS |
| TACAGTGTCAGAGAACCAAT+TGG | 0.564839 | 4_2:+62708623 | Msa0613800:CDS |
| TTTCCCGTGGCTGTTACTTG+TGG | 0.569235 | 4_2:+62708701 | Msa0613800:CDS |
| ACAACATTTAAGACACCCTC+AGG | 0.576285 | 4_2:-62709026 | None:intergenic |
| TTTCTCATTCACTGGCAACA+AGG | 0.579842 | 4_2:+62711747 | Msa0613800:CDS |
| ATCATTGCAGGAAAGTTGAA+AGG | 0.582337 | 4_2:-62708665 | None:intergenic |
| ATATAATATAGAAGGAATTG+GGG | 0.583499 | 4_2:-62712336 | None:intergenic |
| ATCAAATATCACTGCCGACA+TGG | 0.589349 | 4_2:+62711028 | Msa0613800:CDS |
| GTTGTTTGTGCTACTAGGAA+AGG | 0.591730 | 4_2:-62707653 | None:intergenic |
| TCTTAAAGTAAACGCTGGAA+CGG | 0.592374 | 4_2:+62710258 | Msa0613800:CDS |
| TTCAGACTGAGATTGAGGCT+GGG | 0.595013 | 4_2:+62711491 | Msa0613800:CDS |
| CAGCAGTGGAAGGATTCAGT+TGG | 0.600671 | 4_2:+62712154 | Msa0613800:CDS |
| TTGCCACAAGTAACAGCCAC+GGG | 0.603658 | 4_2:-62708704 | None:intergenic |
| ACTGGAGTGTTACGCCATGA+CGG | 0.604165 | 4_2:-62708150 | None:intergenic |
| GTGCATGACAAATAGGTCCC+AGG | 0.604335 | 4_2:+62710969 | Msa0613800:intron |
| TATGTTTCAAATGTTTCACA+TGG | 0.608715 | 4_2:+62708590 | Msa0613800:CDS |
| ACAAACAACACAGCCAAACC+AGG | 0.610926 | 4_2:+62707667 | Msa0613800:five_prime_UTR |
| CCTCCATGAAAAGAAGAACT+GGG | 0.614002 | 4_2:-62711185 | None:intergenic |
| AATTGCCAGATTCATATCCT+GGG | 0.614209 | 4_2:-62710986 | None:intergenic |
| TTGGTGTGCAGTCTAATATG+GGG | 0.615382 | 4_2:+62709684 | Msa0613800:intron |
| TCAAAACAATAACTCAGCAG+TGG | 0.623442 | 4_2:+62712140 | Msa0613800:CDS |
| AAACCATCAGAGAAAGACCC+AGG | 0.627538 | 4_2:+62708740 | Msa0613800:CDS |
| TTCCTGCAATGATTCCATTG+TGG | 0.632608 | 4_2:+62708675 | Msa0613800:CDS |
| AAGACACTGAAGGATGCTCA+AGG | 0.637657 | 4_2:+62708392 | Msa0613800:CDS |
| TTGAATTGCAGGCAAATCAG+GGG | 0.641644 | 4_2:+62712099 | Msa0613800:intron |
| AAAGCTCTTAAAGTAAACGC+TGG | 0.643147 | 4_2:+62710253 | Msa0613800:CDS |
| GCCACGGGAAACATCCACAA+TGG | 0.653277 | 4_2:-62708689 | None:intergenic |
| AGGGTTCCCAATCTTATTGG+GGG | 0.654274 | 4_2:+62707902 | Msa0613800:CDS |
| TCCATTGTGGATGTTTCCCG+TGG | 0.654647 | 4_2:+62708688 | Msa0613800:CDS |
| GAATGGGAACTCTACAAATG+GGG | 0.655252 | 4_2:+62708564 | Msa0613800:CDS |
| GTTCCGAAAGCAGAGATCTG+AGG | 0.658576 | 4_2:-62707830 | None:intergenic |
| TAAGGACGAATCAATTGACA+GGG | 0.658695 | 4_2:-62707510 | None:intergenic |
| TGGCGGTAGCAAGATTAACA+TGG | 0.664280 | 4_2:+62712174 | Msa0613800:CDS |
| TACCTTGTAGCAATCCATGT+CGG | 0.664404 | 4_2:-62711042 | None:intergenic |
| AGGACGAATCAATTGACAGG+GGG | 0.668442 | 4_2:-62707508 | None:intergenic |
| CGAACAAGGAAAGACACTGA+AGG | 0.677513 | 4_2:+62708382 | Msa0613800:CDS |
| ATTGCCACAAGTAACAGCCA+CGG | 0.678517 | 4_2:-62708705 | None:intergenic |
| TGATATTTGATAAGATAGTG+GGG | 0.681135 | 4_2:-62711016 | None:intergenic |
| AGCCGCTGTTGAGAAATGGG+AGG | 0.683940 | 4_2:-62707852 | None:intergenic |
| TGGTGTGCAGTCTAATATGG+GGG | 0.686626 | 4_2:+62709685 | Msa0613800:intron |
| AACCTCCCATTTCTCAACAG+CGG | 0.687198 | 4_2:+62707850 | Msa0613800:CDS |
| AATGGGAACTCTACAAATGG+GGG | 0.689460 | 4_2:+62708565 | Msa0613800:CDS |
| GAGGTGGTGGAACATGCTTG+TGG | 0.694713 | 4_2:+62708542 | Msa0613800:intron |
| GCACAGATTAGTTCAATCTG+GGG | 0.697298 | 4_2:+62710448 | Msa0613800:CDS |
| GGAGCTTCAACATAACACGT+TGG | 0.699352 | 4_2:-62708182 | None:intergenic |
| GGACGAATCAATTGACAGGG+GGG | 0.723548 | 4_2:-62707507 | None:intergenic |
| AAGGACGAATCAATTGACAG+GGG | 0.756627 | 4_2:-62707509 | None:intergenic |
| TCGCAGCTTTCTATTCAACG+AGG | 0.767158 | 4_2:+62707693 | Msa0613800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTTATTAAAAAGAAATAA+TGG | + | chr4_2:62707424-62707443 | Msa0613800:five_prime_UTR | 10.0% |
| !!! | AAATAATGGAATAAATTAAT+AGG | + | chr4_2:62707438-62707457 | Msa0613800:five_prime_UTR | 10.0% |
| !!! | AATTTTTTTTTTTTCTCTTT+TGG | + | chr4_2:62710142-62710161 | Msa0613800:intron | 10.0% |
| !! | ATTTATTTGTTTAAATACAT+TGG | + | chr4_2:62711849-62711868 | Msa0613800:intron | 10.0% |
| !! | GTTTCAGTTTATTATATATA+AGG | - | chr4_2:62707531-62707550 | None:intergenic | 15.0% |
| !! | AAACAAAAACTGTAAATTAA+GGG | - | chr4_2:62707993-62708012 | None:intergenic | 15.0% |
| !! | AAAACAAAAACTGTAAATTA+AGG | - | chr4_2:62707994-62708013 | None:intergenic | 15.0% |
| !!! | TTTTAATTTACATCATTTAG+AGG | + | chr4_2:62708523-62708542 | Msa0613800:intron | 15.0% |
| !! | ATACTAAAATACAACATAAA+GGG | - | chr4_2:62709505-62709524 | None:intergenic | 15.0% |
| !! | TATACTAAAATACAACATAA+AGG | - | chr4_2:62709506-62709525 | None:intergenic | 15.0% |
| !! | TAATAAATCTAGATCAATTT+CGG | - | chr4_2:62709952-62709971 | None:intergenic | 15.0% |
| !!! | TTTTATCATAATTCCAATAT+TGG | + | chr4_2:62710019-62710038 | Msa0613800:intron | 15.0% |
| !!! | TTTTTTTTTTTTTAAACGGA+AGG | - | chr4_2:62710064-62710083 | None:intergenic | 15.0% |
| !!! | TCATTCAAAAATTATTTCTA+CGG | + | chr4_2:62710342-62710361 | Msa0613800:intron | 15.0% |
| !!! | GTGTATAATTTTTTCTATTT+TGG | + | chr4_2:62712238-62712257 | Msa0613800:three_prime_UTR | 15.0% |
| !! | AATATAATATAGAAGGAATT+GGG | - | chr4_2:62712340-62712359 | None:intergenic | 15.0% |
| !! | AAATATAATATAGAAGGAAT+TGG | - | chr4_2:62712341-62712360 | None:intergenic | 15.0% |
| !! | TTTGGAAAATATAATATAGA+AGG | - | chr4_2:62712347-62712366 | None:intergenic | 15.0% |
| !!! | ATATTATATTTTCCAAAATG+AGG | + | chr4_2:62712350-62712369 | Msa0613800:three_prime_UTR | 15.0% |
| !!! | TATTATATTTTCCAAAATGA+GGG | + | chr4_2:62712351-62712370 | Msa0613800:three_prime_UTR | 15.0% |
| !!! | TCTATTTCAACTTTGTTTTT+AGG | + | chr4_2:62708334-62708353 | Msa0613800:intron | 20.0% |
| !!! | ATAGTTATGCTCATAATTTT+GGG | + | chr4_2:62708481-62708500 | Msa0613800:intron | 20.0% |
| !!! | TGTAACATTATAATGGAAAA+AGG | + | chr4_2:62708817-62708836 | Msa0613800:intron | 20.0% |
| !!! | GTAACATTATAATGGAAAAA+GGG | + | chr4_2:62708818-62708837 | Msa0613800:intron | 20.0% |
| !! | ATAGAAAGATATATAGAAGA+GGG | + | chr4_2:62709478-62709497 | Msa0613800:intron | 20.0% |
| !! | TACTAAAATACAACATAAAG+GGG | - | chr4_2:62709504-62709523 | None:intergenic | 20.0% |
| !! | TGATCTAGATTTATTAAATG+TGG | + | chr4_2:62709956-62709975 | Msa0613800:intron | 20.0% |
| !!! | TTTACTGATTATACCAATAT+TGG | - | chr4_2:62710035-62710054 | None:intergenic | 20.0% |
| !!! | TAATCAAAATCAATTTTCCA+AGG | - | chr4_2:62710168-62710187 | None:intergenic | 20.0% |
| !! | ATGTTTCTTAAAATTCTTAC+CGG | + | chr4_2:62710403-62710422 | Msa0613800:intron | 20.0% |
| !! | TGTGTATAATTTGATTCATT+AGG | + | chr4_2:62710611-62710630 | Msa0613800:intron | 20.0% |
| !!! | TTTATTTTATCTTATCCTGA+CGG | - | chr4_2:62710749-62710768 | None:intergenic | 20.0% |
| !! | AATAGGAAATAGTAGTAAAT+AGG | + | chr4_2:62710795-62710814 | Msa0613800:intron | 20.0% |
| !! | TGAATAATCTACCATTATAT+GGG | - | chr4_2:62710879-62710898 | None:intergenic | 20.0% |
| !! | ATGAATAATCTACCATTATA+TGG | - | chr4_2:62710880-62710899 | None:intergenic | 20.0% |
| !! | TGAAAACAAATAAGATTCTA+AGG | - | chr4_2:62711229-62711248 | None:intergenic | 20.0% |
| !! | ATATATAGCTGTTTAACATA+AGG | - | chr4_2:62711390-62711409 | None:intergenic | 20.0% |
| !! | ACAATACATTATTCTATTTG+TGG | - | chr4_2:62711652-62711671 | None:intergenic | 20.0% |
| !!! | AATGATAATGATACTCATTA+TGG | + | chr4_2:62711674-62711693 | Msa0613800:intron | 20.0% |
| !!! | TTTTTCTTATGATATGTTGT+AGG | + | chr4_2:62712054-62712073 | Msa0613800:intron | 20.0% |
| !! | ATATAATATAGAAGGAATTG+GGG | - | chr4_2:62712339-62712358 | None:intergenic | 20.0% |
| !! | GGATATATTATTTATGGATT+CGG | - | chr4_2:62712390-62712409 | None:intergenic | 20.0% |
| ! | AAATTAAGGATGATACAGTT+TGG | - | chr4_2:62707612-62707631 | None:intergenic | 25.0% |
| ! | TATGGTGTTTGAAGAAATTA+AGG | - | chr4_2:62707626-62707645 | None:intergenic | 25.0% |
| ! | CTATCTAATATTTGTCTGAT+TGG | + | chr4_2:62708033-62708052 | Msa0613800:intron | 25.0% |
| !! | CATAGTTATGCTCATAATTT+TGG | + | chr4_2:62708480-62708499 | Msa0613800:intron | 25.0% |
| ! | TAATTTACATCATTTAGAGG+TGG | + | chr4_2:62708526-62708545 | Msa0613800:intron | 25.0% |
| ! | TATGTTTCAAATGTTTCACA+TGG | + | chr4_2:62708590-62708609 | Msa0613800:CDS | 25.0% |
| ! | CAGATTGAGAAAATAATACA+AGG | - | chr4_2:62708789-62708808 | None:intergenic | 25.0% |
| !! | CTTGTATTATTTTCTCAATC+TGG | + | chr4_2:62708787-62708806 | Msa0613800:intron | 25.0% |
| ! | AGCATAGTGTAACATTATAA+TGG | + | chr4_2:62708810-62708829 | Msa0613800:intron | 25.0% |
| !!! | CTCTAACATTGTTTTTCATT+CGG | + | chr4_2:62708842-62708861 | Msa0613800:intron | 25.0% |
| !! | TACAGCAAAGTTTGTTTAAA+AGG | - | chr4_2:62708881-62708900 | None:intergenic | 25.0% |
| ! | TAAATGTGAAAGTTGTTCAA+AGG | + | chr4_2:62709180-62709199 | Msa0613800:intron | 25.0% |
| ! | AAATGTGAAAGTTGTTCAAA+GGG | + | chr4_2:62709181-62709200 | Msa0613800:intron | 25.0% |
| ! | ATTAAAGCCATATCATTTGT+TGG | + | chr4_2:62709324-62709343 | Msa0613800:CDS | 25.0% |
| ! | ATAAGACAAACTTACAACAT+TGG | - | chr4_2:62709352-62709371 | None:intergenic | 25.0% |
| ! | GATAGAAAGATATATAGAAG+AGG | + | chr4_2:62709477-62709496 | Msa0613800:intron | 25.0% |
| !! | GAAGTCCTTATTTGTATTAA+AGG | + | chr4_2:62709532-62709551 | Msa0613800:intron | 25.0% |
| ! | TATATTAACCAATTTCACTG+AGG | - | chr4_2:62709627-62709646 | None:intergenic | 25.0% |
| ! | AACATGTAATGATATGAAGT+TGG | + | chr4_2:62709647-62709666 | Msa0613800:intron | 25.0% |
| ! | GTTGGCCAATTAATAAAATT+TGG | + | chr4_2:62709665-62709684 | Msa0613800:intron | 25.0% |
| !! | GCACACCAAATTTTATTAAT+TGG | - | chr4_2:62709673-62709692 | None:intergenic | 25.0% |
| !! | GTTTTCTGCTTAATCATATA+GGG | + | chr4_2:62709990-62710009 | Msa0613800:intron | 25.0% |
| ! | TAAAATCAATCATGCTAAAC+AGG | + | chr4_2:62710765-62710784 | Msa0613800:intron | 25.0% |
| ! | GATAAGCAATCCTTAAAATT+GGG | - | chr4_2:62710940-62710959 | None:intergenic | 25.0% |
| ! | TGATAAGCAATCCTTAAAAT+TGG | - | chr4_2:62710941-62710960 | None:intergenic | 25.0% |
| ! | TGATATTTGATAAGATAGTG+GGG | - | chr4_2:62711019-62711038 | None:intergenic | 25.0% |
| ! | GTGATATTTGATAAGATAGT+GGG | - | chr4_2:62711020-62711039 | None:intergenic | 25.0% |
| ! | AGTGATATTTGATAAGATAG+TGG | - | chr4_2:62711021-62711040 | None:intergenic | 25.0% |
| ! | ATAAACATCAACTCTCTATT+AGG | - | chr4_2:62711112-62711131 | None:intergenic | 25.0% |
| !!! | TCTGTTTTGTTTTTATCTTC+AGG | + | chr4_2:62711290-62711309 | Msa0613800:intron | 25.0% |
| !!! | GTTTTTGTTGATAATGCTTA+TGG | - | chr4_2:62711334-62711353 | None:intergenic | 25.0% |
| ! | ACAAGTATTTATCAAACACA+CGG | + | chr4_2:62711352-62711371 | Msa0613800:intron | 25.0% |
| ! | GGTAAATATATACTACTTCT+TGG | + | chr4_2:62711516-62711535 | Msa0613800:intron | 25.0% |
| ! | AATATATACTACTTCTTGGA+AGG | + | chr4_2:62711520-62711539 | Msa0613800:intron | 25.0% |
| !! | ATATACTGGTTGGAATTTAT+CGG | - | chr4_2:62711565-62711584 | None:intergenic | 25.0% |
| !! | ATGCAATAATGGAATATGAT+TGG | - | chr4_2:62711612-62711631 | None:intergenic | 25.0% |
| ! | AATCATATTCCATTATTGCA+TGG | + | chr4_2:62711611-62711630 | Msa0613800:intron | 25.0% |
| ! | TTTGTTTAAATACATTGGAG+AGG | + | chr4_2:62711854-62711873 | Msa0613800:intron | 25.0% |
| ! | TTGTTTAAATACATTGGAGA+GGG | + | chr4_2:62711855-62711874 | Msa0613800:intron | 25.0% |
| !! | AATGATCATTTTACAACTGT+TGG | + | chr4_2:62711905-62711924 | Msa0613800:intron | 25.0% |
| ! | AAATTATACACATGACTTTC+TGG | - | chr4_2:62712229-62712248 | None:intergenic | 25.0% |
| ! | ACTCTTCAATAAAATGTCAT+AGG | + | chr4_2:62712270-62712289 | Msa0613800:three_prime_UTR | 25.0% |
| ! | AAGCAGAAAAGAAAAACAAA+AGG | - | chr4_2:62712311-62712330 | None:intergenic | 25.0% |
| GTAGTTGAATTTGATACGAA+AGG | + | chr4_2:62707460-62707479 | Msa0613800:five_prime_UTR | 30.0% | |
| GAATTTGATACGAAAGGATT+TGG | + | chr4_2:62707466-62707485 | Msa0613800:five_prime_UTR | 30.0% | |
| ACTAGGAAAGGAAAAGAATA+TGG | - | chr4_2:62707644-62707663 | None:intergenic | 30.0% | |
| GGGAAAAAAAAACACTTACA+GGG | - | chr4_2:62707973-62707992 | None:intergenic | 30.0% | |
| AGGGAAAAAAAAACACTTAC+AGG | - | chr4_2:62707974-62707993 | None:intergenic | 30.0% | |
| ! | ACTTTTCACAATAAGCATGA+CGG | - | chr4_2:62708301-62708320 | None:intergenic | 30.0% |
| ! | TAAACAAACTTTGCTGTAGT+TGG | + | chr4_2:62708883-62708902 | Msa0613800:intron | 30.0% |
| ! | AAACAAACTTTGCTGTAGTT+GGG | + | chr4_2:62708884-62708903 | Msa0613800:intron | 30.0% |
| TTTATGCTAAACCATCTAGT+GGG | + | chr4_2:62708916-62708935 | Msa0613800:intron | 30.0% | |
| !! | TGATATTTGTTGTTTGTTCC+AGG | + | chr4_2:62708960-62708979 | Msa0613800:intron | 30.0% |
| TTCTATAATGCTTGCAGAAT+TGG | + | chr4_2:62708986-62709005 | Msa0613800:CDS | 30.0% | |
| AAAGAGATGATAGCATACAT+GGG | - | chr4_2:62709060-62709079 | None:intergenic | 30.0% | |
| AAAAGAGATGATAGCATACA+TGG | - | chr4_2:62709061-62709080 | None:intergenic | 30.0% | |
| TAGTGAGTATCAAAAGAAAC+AGG | - | chr4_2:62709105-62709124 | None:intergenic | 30.0% | |
| TCACTAATTAAATGTGCTCA+TGG | + | chr4_2:62709119-62709138 | Msa0613800:intron | 30.0% | |
| CACTAATTAAATGTGCTCAT+GGG | + | chr4_2:62709120-62709139 | Msa0613800:intron | 30.0% | |
| AATACGATGAAAACACCAAA+TGG | - | chr4_2:62709154-62709173 | None:intergenic | 30.0% | |
| !!! | ATTGTGCTTTGTTTTTCTCA+CGG | + | chr4_2:62709241-62709260 | Msa0613800:intron | 30.0% |
| GGATTGATATCCTTGATTAT+TGG | + | chr4_2:62709262-62709281 | Msa0613800:intron | 30.0% | |
| AATATCGTCATCATCACAAA+TGG | - | chr4_2:62709307-62709326 | None:intergenic | 30.0% | |
| !! | TTCTGACAAGATTGCTTTTA+AGG | - | chr4_2:62709424-62709443 | None:intergenic | 30.0% |
| TCTATCTAAGCACATTCAAA+CGG | - | chr4_2:62709463-62709482 | None:intergenic | 30.0% | |
| ! | TCCTTATTTGTATTAAAGGC+TGG | + | chr4_2:62709536-62709555 | Msa0613800:intron | 30.0% |
| TCCAGCCTTTAATACAAATA+AGG | - | chr4_2:62709540-62709559 | None:intergenic | 30.0% | |
| !! | TCATTTTTCCTCAGTGAAAT+TGG | + | chr4_2:62709616-62709635 | Msa0613800:intron | 30.0% |
| ! | CATGATGATTGCATGATTTT+TGG | - | chr4_2:62709711-62709730 | None:intergenic | 30.0% |
| ! | CGTTTTCTGCTTAATCATAT+AGG | + | chr4_2:62709989-62710008 | Msa0613800:intron | 30.0% |
| !!! | TTTTTTTTCTCTTTTGGCCT+TGG | + | chr4_2:62710148-62710167 | Msa0613800:intron | 30.0% |
| TACAATAACTCAGTTGACAA+GGG | - | chr4_2:62710540-62710559 | None:intergenic | 30.0% | |
| ATACAATAACTCAGTTGACA+AGG | - | chr4_2:62710541-62710560 | None:intergenic | 30.0% | |
| AAACCATGTATCTAATGCAT+TGG | - | chr4_2:62710682-62710701 | None:intergenic | 30.0% | |
| TAATCAAAGGAGTGAAAACA+AGG | - | chr4_2:62710721-62710740 | None:intergenic | 30.0% | |
| GCTAAACAGGAAAGTAAAAT+AGG | + | chr4_2:62710778-62710797 | Msa0613800:intron | 30.0% | |
| ACCATTATATGGGAAAACAA+AGG | - | chr4_2:62710869-62710888 | None:intergenic | 30.0% | |
| TAAAATTGGGCAGAAGAAAT+GGG | - | chr4_2:62710927-62710946 | None:intergenic | 30.0% | |
| TTAAAATTGGGCAGAAGAAA+TGG | - | chr4_2:62710928-62710947 | None:intergenic | 30.0% | |
| ! | ATTTCTTCTGCCCAATTTTA+AGG | + | chr4_2:62710927-62710946 | Msa0613800:intron | 30.0% |
| ! | TATGAATCTGGCAATTTTGT+TGG | + | chr4_2:62710993-62711012 | Msa0613800:CDS | 30.0% |
| ! | CTTACTCTATCATTTTCAAC+AGG | + | chr4_2:62711416-62711435 | Msa0613800:intron | 30.0% |
| ! | TCTATCATTTTCAACAGGTA+TGG | + | chr4_2:62711421-62711440 | Msa0613800:intron | 30.0% |
| ! | ATTTTCAACAGGTATGGAAA+TGG | + | chr4_2:62711427-62711446 | Msa0613800:intron | 30.0% |
| GCTTCTATATTTACTACTTC+TGG | + | chr4_2:62711451-62711470 | Msa0613800:CDS | 30.0% | |
| TTCCAACCAGTATATGAATT+AGG | + | chr4_2:62711570-62711589 | Msa0613800:intron | 30.0% | |
| ACAACTCCTAATTCATATAC+TGG | - | chr4_2:62711579-62711598 | None:intergenic | 30.0% | |
| ATGATACTCATTATGGATCT+TGG | + | chr4_2:62711681-62711700 | Msa0613800:intron | 30.0% | |
| AGAGTGATTTATCCAAAATC+TGG | + | chr4_2:62711802-62711821 | Msa0613800:intron | 30.0% | |
| TGTTTAAATACATTGGAGAG+GGG | + | chr4_2:62711856-62711875 | Msa0613800:intron | 30.0% | |
| !! | ATTTTACAACTGTTGGTGAA+AGG | + | chr4_2:62711912-62711931 | Msa0613800:intron | 30.0% |
| GATTTGAATTGTTGAATTGC+AGG | + | chr4_2:62712088-62712107 | Msa0613800:intron | 30.0% | |
| ! | CCTAATATAAACCCTCATTT+TGG | - | chr4_2:62712365-62712384 | None:intergenic | 30.0% |
| CCAAAATGAGGGTTTATATT+AGG | + | chr4_2:62712362-62712381 | Msa0613800:three_prime_UTR | 30.0% | |
| TAAGGACGAATCAATTGACA+GGG | - | chr4_2:62707513-62707532 | None:intergenic | 35.0% | |
| ATAAGGACGAATCAATTGAC+AGG | - | chr4_2:62707514-62707533 | None:intergenic | 35.0% | |
| TTCCACTGATCGCTATAAAA+GGG | + | chr4_2:62707883-62707902 | Msa0613800:CDS | 35.0% | |
| AAAAGGGTTCCCAATCTTAT+TGG | + | chr4_2:62707899-62707918 | Msa0613800:CDS | 35.0% | |
| AAAGGGTTCCCAATCTTATT+GGG | + | chr4_2:62707900-62707919 | Msa0613800:CDS | 35.0% | |
| ! | CACTTACAGGGTTTAAAACA+TGG | - | chr4_2:62707961-62707980 | None:intergenic | 35.0% |
| CTTAATATAACCACCGAACA+AGG | + | chr4_2:62708368-62708387 | Msa0613800:CDS | 35.0% | |
| TTTACATCATTTAGAGGTGG+TGG | + | chr4_2:62708529-62708548 | Msa0613800:intron | 35.0% | |
| ATCATTGCAGGAAAGTTGAA+AGG | - | chr4_2:62708668-62708687 | None:intergenic | 35.0% | |
| CTTTATGCTAAACCATCTAG+TGG | + | chr4_2:62708915-62708934 | Msa0613800:intron | 35.0% | |
| GGTGTCTTAAATGTTGTTCA+TGG | + | chr4_2:62709032-62709051 | Msa0613800:CDS | 35.0% | |
| ! | TATCCTTGATTATTGGTGAC+AGG | + | chr4_2:62709269-62709288 | Msa0613800:intron | 35.0% |
| ATTGGAGCCAACAAATGATA+TGG | - | chr4_2:62709334-62709353 | None:intergenic | 35.0% | |
| !! | ATTTGGTGTGCAGTCTAATA+TGG | + | chr4_2:62709682-62709701 | Msa0613800:intron | 35.0% |
| ! | TTTGGTGTGCAGTCTAATAT+GGG | + | chr4_2:62709683-62709702 | Msa0613800:intron | 35.0% |
| AACACAGAAATCGTGGTAAA+CGG | - | chr4_2:62709881-62709900 | None:intergenic | 35.0% | |
| !!! | CTGTGTTGGCTTTTTTTACT+TGG | + | chr4_2:62709894-62709913 | Msa0613800:intron | 35.0% |
| TTCTGCTTAATCATATAGGG+TGG | + | chr4_2:62709993-62710012 | Msa0613800:intron | 35.0% | |
| CTAGAGAAAATACCTTGTGA+CGG | + | chr4_2:62710096-62710115 | Msa0613800:intron | 35.0% | |
| ! | AGCGTTTACTTTAAGAGCTT+TGG | - | chr4_2:62710254-62710273 | None:intergenic | 35.0% |
| AAAGCTCTTAAAGTAAACGC+TGG | + | chr4_2:62710253-62710272 | Msa0613800:CDS | 35.0% | |
| TCTTAAAGTAAACGCTGGAA+CGG | + | chr4_2:62710258-62710277 | Msa0613800:CDS | 35.0% | |
| ! | TGCACAGATTAGTTCAATCT+GGG | + | chr4_2:62710447-62710466 | Msa0613800:CDS | 35.0% |
| CAGTTGACAAGGGAAATTAA+GGG | - | chr4_2:62710530-62710549 | None:intergenic | 35.0% | |
| TCAGTTGACAAGGGAAATTA+AGG | - | chr4_2:62710531-62710550 | None:intergenic | 35.0% | |
| GACGCATAACTTTATTCTAC+AGG | + | chr4_2:62710822-62710841 | Msa0613800:intron | 35.0% | |
| !!! | GCCTTTGTTTTCCCATATAA+TGG | + | chr4_2:62710865-62710884 | Msa0613800:intron | 35.0% |
| AAAATTGGGCAGAAGAAATG+GGG | - | chr4_2:62710926-62710945 | None:intergenic | 35.0% | |
| TTCATACGTGCATGACAAAT+AGG | + | chr4_2:62710962-62710981 | Msa0613800:intron | 35.0% | |
| AATTGCCAGATTCATATCCT+GGG | - | chr4_2:62710989-62711008 | None:intergenic | 35.0% | |
| AAATTGCCAGATTCATATCC+TGG | - | chr4_2:62710990-62711009 | None:intergenic | 35.0% | |
| CTTACCAATCTCAAATCTCA+AGG | + | chr4_2:62711069-62711088 | Msa0613800:intron | 35.0% | |
| ! | GAAACCTTGAGATTTGAGAT+TGG | - | chr4_2:62711076-62711095 | None:intergenic | 35.0% |
| GAAATTTCAGACTGAGATTG+AGG | + | chr4_2:62711486-62711505 | Msa0613800:CDS | 35.0% | |
| CTCCTAATTCATATACTGGT+TGG | - | chr4_2:62711575-62711594 | None:intergenic | 35.0% | |
| GAATCTAGTCCATGCAATAA+TGG | - | chr4_2:62711623-62711642 | None:intergenic | 35.0% | |
| GTGAATGAGAAAAATGGCAA+AGG | - | chr4_2:62711739-62711758 | None:intergenic | 35.0% | |
| !!! | TTGCCATTTTTCTCATTCAC+TGG | + | chr4_2:62711739-62711758 | Msa0613800:CDS | 35.0% |
| TTGCCAGTGAATGAGAAAAA+TGG | - | chr4_2:62711745-62711764 | None:intergenic | 35.0% | |
| !! | GAGTTTGACTTGTAACTGTA+AGG | - | chr4_2:62711952-62711971 | None:intergenic | 35.0% |
| CAAGTCAAACTCTTACTACT+AGG | + | chr4_2:62711960-62711979 | Msa0613800:intron | 35.0% | |
| TCAAAACAATAACTCAGCAG+TGG | + | chr4_2:62712140-62712159 | Msa0613800:CDS | 35.0% | |
| !! | GATCAAGATTTTTGAGAGGT+TGG | - | chr4_2:62712205-62712224 | None:intergenic | 35.0% |
| !! | TGGTGATCAAGATTTTTGAG+AGG | - | chr4_2:62712209-62712228 | None:intergenic | 35.0% |
| AAGGACGAATCAATTGACAG+GGG | - | chr4_2:62707512-62707531 | None:intergenic | 40.0% | |
| ! | GTTGTTTGTGCTACTAGGAA+AGG | - | chr4_2:62707656-62707675 | None:intergenic | 40.0% |
| TGATCGATGATCGTGTATCT+GGG | - | chr4_2:62707759-62707778 | None:intergenic | 40.0% | |
| TTATAGCGATCAGTGGAAGA+TGG | - | chr4_2:62707881-62707900 | None:intergenic | 40.0% | |
| CTTCCACTGATCGCTATAAA+AGG | + | chr4_2:62707882-62707901 | Msa0613800:CDS | 40.0% | |
| ! | AACCCTTTTATAGCGATCAG+TGG | - | chr4_2:62707888-62707907 | None:intergenic | 40.0% |
| AAGGGTTCCCAATCTTATTG+GGG | + | chr4_2:62707901-62707920 | Msa0613800:CDS | 40.0% | |
| AACCTTCCCCCAATAAGATT+GGG | - | chr4_2:62707911-62707930 | None:intergenic | 40.0% | |
| AAACCTTCCCCCAATAAGAT+TGG | - | chr4_2:62707912-62707931 | None:intergenic | 40.0% | |
| ! | TTGTCTGATTGGCTGATCAT+AGG | + | chr4_2:62708044-62708063 | Msa0613800:intron | 40.0% |
| ! | TTCGCAAGTTCCATTGACTA+CGG | + | chr4_2:62708083-62708102 | Msa0613800:CDS | 40.0% |
| AACTCATCATCCGTAGTCAA+TGG | - | chr4_2:62708096-62708115 | None:intergenic | 40.0% | |
| CTTCAGTGTCTTTCCTTGTT+CGG | - | chr4_2:62708384-62708403 | None:intergenic | 40.0% | |
| ATGTGTTTCGTGGTTTAGGT+TGG | + | chr4_2:62708417-62708436 | Msa0613800:intron | 40.0% | |
| TGGAATGGGAACTCTACAAA+TGG | + | chr4_2:62708562-62708581 | Msa0613800:CDS | 40.0% | |
| GGAATGGGAACTCTACAAAT+GGG | + | chr4_2:62708563-62708582 | Msa0613800:CDS | 40.0% | |
| GAATGGGAACTCTACAAATG+GGG | + | chr4_2:62708564-62708583 | Msa0613800:CDS | 40.0% | |
| AATGGGAACTCTACAAATGG+GGG | + | chr4_2:62708565-62708584 | Msa0613800:CDS | 40.0% | |
| TACAGTGTCAGAGAACCAAT+TGG | + | chr4_2:62708623-62708642 | Msa0613800:CDS | 40.0% | |
| ! | AACCAATTGGTGTTTGTGCT+GGG | + | chr4_2:62708636-62708655 | Msa0613800:CDS | 40.0% |
| TTCCTGCAATGATTCCATTG+TGG | + | chr4_2:62708675-62708694 | Msa0613800:CDS | 40.0% | |
| ATCCACAATGGAATCATTGC+AGG | - | chr4_2:62708680-62708699 | None:intergenic | 40.0% | |
| ATAGAAAGCCAACATCACCT+GGG | - | chr4_2:62708760-62708779 | None:intergenic | 40.0% | |
| ! | ACAACATTTAAGACACCCTC+AGG | - | chr4_2:62709029-62709048 | None:intergenic | 40.0% |
| ! | TCATGGGCTCTTTTTCCATT+TGG | + | chr4_2:62709136-62709155 | Msa0613800:intron | 40.0% |
| CATCCTGTCACCAATAATCA+AGG | - | chr4_2:62709275-62709294 | None:intergenic | 40.0% | |
| !!! | TGCTTTTAAGGTCACAGAAG+AGG | - | chr4_2:62709412-62709431 | None:intergenic | 40.0% |
| TATTCAAGAGCAGCAGCTAA+AGG | + | chr4_2:62709569-62709588 | Msa0613800:CDS | 40.0% | |
| ATTCAAGAGCAGCAGCTAAA+GGG | + | chr4_2:62709570-62709589 | Msa0613800:CDS | 40.0% | |
| TTGGTGTGCAGTCTAATATG+GGG | + | chr4_2:62709684-62709703 | Msa0613800:intron | 40.0% | |
| GTAAATGCTTTAGTTGCTGC+TGG | + | chr4_2:62709755-62709774 | Msa0613800:CDS | 40.0% | |
| GTTTACCACGATTTCTGTGT+TGG | + | chr4_2:62709880-62709899 | Msa0613800:intron | 40.0% | |
| AAAAGCCAACACAGAAATCG+TGG | - | chr4_2:62709888-62709907 | None:intergenic | 40.0% | |
| ATCCTCCACAATATTTGTGC+AGG | + | chr4_2:62710206-62710225 | Msa0613800:intron | 40.0% | |
| TCCTCCACAATATTTGTGCA+GGG | + | chr4_2:62710207-62710226 | Msa0613800:intron | 40.0% | |
| ! | CAAACCTGTTTGCTGATAAC+TGG | - | chr4_2:62710304-62710323 | None:intergenic | 40.0% |
| ! | ACAGGTTTGTTTACACTCTC+TGG | + | chr4_2:62710315-62710334 | Msa0613800:intron | 40.0% |
| !! | AAAATTCTTACCGGCTTCAC+AGG | + | chr4_2:62710412-62710431 | Msa0613800:intron | 40.0% |
| ! | GTGCACAGATTAGTTCAATC+TGG | + | chr4_2:62710446-62710465 | Msa0613800:CDS | 40.0% |
| ! | GCACAGATTAGTTCAATCTG+GGG | + | chr4_2:62710448-62710467 | Msa0613800:CDS | 40.0% |
| ! | GCTTGATGGAAGAAGTATAG+TGG | + | chr4_2:62710493-62710512 | Msa0613800:CDS | 40.0% |
| AAATTGGGCAGAAGAAATGG+GGG | - | chr4_2:62710925-62710944 | None:intergenic | 40.0% | |
| ATCAAATATCACTGCCGACA+TGG | + | chr4_2:62711028-62711047 | Msa0613800:CDS | 40.0% | |
| TACCTTGTAGCAATCCATGT+CGG | - | chr4_2:62711045-62711064 | None:intergenic | 40.0% | |
| GTCTTTAACATGACACACAC+AGG | + | chr4_2:62711149-62711168 | Msa0613800:intron | 40.0% | |
| TTTAACATGACACACACAGG+AGG | + | chr4_2:62711152-62711171 | Msa0613800:intron | 40.0% | |
| ! | CACACACAGGAGGAAATTTT+TGG | + | chr4_2:62711162-62711181 | Msa0613800:intron | 40.0% |
| CCTCCATGAAAAGAAGAACT+GGG | - | chr4_2:62711188-62711207 | None:intergenic | 40.0% | |
| ACCTCCATGAAAAGAAGAAC+TGG | - | chr4_2:62711189-62711208 | None:intergenic | 40.0% | |
| ACACAAATGTCTGTCTCATC+TGG | - | chr4_2:62711252-62711271 | None:intergenic | 40.0% | |
| GATGAGACAGACATTTGTGT+TGG | + | chr4_2:62711252-62711271 | Msa0613800:intron | 40.0% | |
| TTATCTTCAGGCTGATAGCT+TGG | + | chr4_2:62711302-62711321 | Msa0613800:intron | 40.0% | |
| AGCTGTTTAACATAAGGCGA+TGG | - | chr4_2:62711384-62711403 | None:intergenic | 40.0% | |
| AATGGCAAAGGAACTGGAAT+AGG | - | chr4_2:62711727-62711746 | None:intergenic | 40.0% | |
| GAGAAAAATGGCAAAGGAAC+TGG | - | chr4_2:62711733-62711752 | None:intergenic | 40.0% | |
| TTTCTCATTCACTGGCAACA+AGG | + | chr4_2:62711747-62711766 | Msa0613800:CDS | 40.0% | |
| ! | ATTGCAGACAAGCCAGATTT+TGG | - | chr4_2:62711817-62711836 | None:intergenic | 40.0% |
| TGTTGAATTGCAGGCAAATC+AGG | + | chr4_2:62712097-62712116 | Msa0613800:intron | 40.0% | |
| GTTGAATTGCAGGCAAATCA+GGG | + | chr4_2:62712098-62712117 | Msa0613800:intron | 40.0% | |
| TTGAATTGCAGGCAAATCAG+GGG | + | chr4_2:62712099-62712118 | Msa0613800:intron | 40.0% | |
| AACAATAACTCAGCAGTGGA+AGG | + | chr4_2:62712144-62712163 | Msa0613800:CDS | 40.0% | |
| AGGACGAATCAATTGACAGG+GGG | - | chr4_2:62707511-62707530 | None:intergenic | 45.0% | |
| !! | GCTGTGTTGTTTGTGCTACT+AGG | - | chr4_2:62707661-62707680 | None:intergenic | 45.0% |
| ACAAACAACACAGCCAAACC+AGG | + | chr4_2:62707667-62707686 | Msa0613800:five_prime_UTR | 45.0% | |
| AATAGAAAGCTGCGACATCC+TGG | - | chr4_2:62707688-62707707 | None:intergenic | 45.0% | |
| TCGCAGCTTTCTATTCAACG+AGG | + | chr4_2:62707693-62707712 | Msa0613800:CDS | 45.0% | |
| GTGATCGATGATCGTGTATC+TGG | - | chr4_2:62707760-62707779 | None:intergenic | 45.0% | |
| ATGCCTCAGATCTCTGCTTT+CGG | + | chr4_2:62707827-62707846 | Msa0613800:CDS | 45.0% | |
| AACCTCCCATTTCTCAACAG+CGG | + | chr4_2:62707850-62707869 | Msa0613800:CDS | 45.0% | |
| TTGAGCCGCTGTTGAGAAAT+GGG | - | chr4_2:62707858-62707877 | None:intergenic | 45.0% | |
| AGGGTTCCCAATCTTATTGG+GGG | + | chr4_2:62707902-62707921 | Msa0613800:CDS | 45.0% | |
| TTCCCAATCTTATTGGGGGA+AGG | + | chr4_2:62707906-62707925 | Msa0613800:CDS | 45.0% | |
| TGCTGTATCTGCAGCTAAGA+AGG | + | chr4_2:62708122-62708141 | Msa0613800:CDS | 45.0% | |
| !! | CTAAGAAGGCATTTCCGTCA+TGG | + | chr4_2:62708136-62708155 | Msa0613800:CDS | 45.0% |
| GGAGCTTCAACATAACACGT+TGG | - | chr4_2:62708185-62708204 | None:intergenic | 45.0% | |
| ACGTGTTATGTTGAAGCTCC+AGG | + | chr4_2:62708185-62708204 | Msa0613800:CDS | 45.0% | |
| TATCTCTGCGTATAAGCTCC+TGG | - | chr4_2:62708206-62708225 | None:intergenic | 45.0% | |
| GGAGCTTATACGCAGAGATA+TGG | + | chr4_2:62708206-62708225 | Msa0613800:CDS | 45.0% | |
| CGAACAAGGAAAGACACTGA+AGG | + | chr4_2:62708382-62708401 | Msa0613800:CDS | 45.0% | |
| AAGACACTGAAGGATGCTCA+AGG | + | chr4_2:62708392-62708411 | Msa0613800:CDS | 45.0% | |
| GGAGATGTGTTTCGTGGTTT+AGG | + | chr4_2:62708413-62708432 | Msa0613800:CDS | 45.0% | |
| GTGGAACATGCTTGTGGAAT+GGG | + | chr4_2:62708548-62708567 | Msa0613800:CDS | 45.0% | |
| ! | GAACCAATTGGTGTTTGTGC+TGG | + | chr4_2:62708635-62708654 | Msa0613800:CDS | 45.0% |
| ATCCCAGCACAAACACCAAT+TGG | - | chr4_2:62708641-62708660 | None:intergenic | 45.0% | |
| ATTGCCACAAGTAACAGCCA+CGG | - | chr4_2:62708708-62708727 | None:intergenic | 45.0% | |
| AAACCATCAGAGAAAGACCC+AGG | + | chr4_2:62708740-62708759 | Msa0613800:CDS | 45.0% | |
| GATAGAAAGCCAACATCACC+TGG | - | chr4_2:62708761-62708780 | None:intergenic | 45.0% | |
| CTAAACCATCTAGTGGGATG+AGG | + | chr4_2:62708922-62708941 | Msa0613800:intron | 45.0% | |
| AAAAGCCTCATCCCACTAGA+TGG | - | chr4_2:62708930-62708949 | None:intergenic | 45.0% | |
| ! | ATCTAGTGGGATGAGGCTTT+TGG | + | chr4_2:62708929-62708948 | Msa0613800:intron | 45.0% |
| !! | GCAAGCATTATAGAAGCACC+TGG | - | chr4_2:62708981-62709000 | None:intergenic | 45.0% |
| AATGCTTGCAGAATTGGCAC+TGG | + | chr4_2:62708992-62709011 | Msa0613800:CDS | 45.0% | |
| TGGTGTGCAGTCTAATATGG+GGG | + | chr4_2:62709685-62709704 | Msa0613800:intron | 45.0% | |
| GTAGCATCAACATTTGCGTC+TGG | - | chr4_2:62709734-62709753 | None:intergenic | 45.0% | |
| !!! | GCTTTAGTTGCTGCTGGTTT+TGG | + | chr4_2:62709761-62709780 | Msa0613800:CDS | 45.0% |
| !! | TCTCAGCACAGTTGTTTTCG+TGG | + | chr4_2:62709808-62709827 | Msa0613800:CDS | 45.0% |
| !! | CTCAGCACAGTTGTTTTCGT+GGG | + | chr4_2:62709809-62709828 | Msa0613800:CDS | 45.0% |
| GGAAATCAGTCGAAGCAGAA+TGG | - | chr4_2:62709860-62709879 | None:intergenic | 45.0% | |
| GAGAAAATACCTTGTGACGG+AGG | + | chr4_2:62710099-62710118 | Msa0613800:intron | 45.0% | |
| ! | ACGGAGGTGTATGGATTCAT+TGG | + | chr4_2:62710115-62710134 | Msa0613800:intron | 45.0% |
| GTTGCCCTGCACAAATATTG+TGG | - | chr4_2:62710214-62710233 | None:intergenic | 45.0% | |
| TGGTCCAGTTATCAGCAAAC+AGG | + | chr4_2:62710297-62710316 | Msa0613800:CDS | 45.0% | |
| TCTTCCATCAAGCAGTAGTC+TGG | - | chr4_2:62710486-62710505 | None:intergenic | 45.0% | |
| GCGCCAATGCATTAGATACA+TGG | + | chr4_2:62710676-62710695 | Msa0613800:intron | 45.0% | |
| ! | CCTGACGGACAGATAATCAA+AGG | - | chr4_2:62710734-62710753 | None:intergenic | 45.0% |
| CCTTTGATTATCTGTCCGTC+AGG | + | chr4_2:62710731-62710750 | Msa0613800:intron | 45.0% | |
| GGAAAACAAAGGCCTACTCA+AGG | - | chr4_2:62710858-62710877 | None:intergenic | 45.0% | |
| TAGGTCCCAGGATATGAATC+TGG | + | chr4_2:62710981-62711000 | Msa0613800:intron | 45.0% | |
| ! | TGGCCCAGTTCTTCTTTTCA+TGG | + | chr4_2:62711182-62711201 | Msa0613800:CDS | 45.0% |
| ! | CCCAGTTCTTCTTTTCATGG+AGG | + | chr4_2:62711185-62711204 | Msa0613800:CDS | 45.0% |
| TTTCAGACTGAGATTGAGGC+TGG | + | chr4_2:62711490-62711509 | Msa0613800:CDS | 45.0% | |
| TTCAGACTGAGATTGAGGCT+GGG | + | chr4_2:62711491-62711510 | Msa0613800:CDS | 45.0% | |
| CTCATTATGGATCTTGGACC+AGG | + | chr4_2:62711687-62711706 | Msa0613800:intron | 45.0% | |
| TTATGGATCTTGGACCAGGT+TGG | + | chr4_2:62711691-62711710 | Msa0613800:intron | 45.0% | |
| TAGGAACATTGATGCCAACC+TGG | - | chr4_2:62711708-62711727 | None:intergenic | 45.0% | |
| GCTGGCGATCTCAATTTCTA+CGG | + | chr4_2:62711778-62711797 | Msa0613800:CDS | 45.0% | |
| ACTACTAGGCTGACACATCA+TGG | + | chr4_2:62711974-62711993 | Msa0613800:intron | 45.0% | |
| TGGCGGTAGCAAGATTAACA+TGG | + | chr4_2:62712174-62712193 | Msa0613800:CDS | 45.0% | |
| !!! | TTGTTTTTTTTTTTTTTAAA+CGG | - | chr4_2:62710068-62710087 | None:intergenic | 5.0% |
| GGACGAATCAATTGACAGGG+GGG | - | chr4_2:62707510-62707529 | None:intergenic | 50.0% | |
| AAAGCTGCGACATCCTGGTT+TGG | - | chr4_2:62707683-62707702 | None:intergenic | 50.0% | |
| GTTCCGAAAGCAGAGATCTG+AGG | - | chr4_2:62707833-62707852 | None:intergenic | 50.0% | |
| GTTGAGCCGCTGTTGAGAAA+TGG | - | chr4_2:62707859-62707878 | None:intergenic | 50.0% | |
| ! | ACTGGAGTGTTACGCCATGA+CGG | - | chr4_2:62708153-62708172 | None:intergenic | 50.0% |
| CAGTGTCTTTCCTTGTTCGG+TGG | - | chr4_2:62708381-62708400 | None:intergenic | 50.0% | |
| GCTCAAGGAGATGTGTTTCG+TGG | + | chr4_2:62708407-62708426 | Msa0613800:CDS | 50.0% | |
| GGTGGAACATGCTTGTGGAA+TGG | + | chr4_2:62708547-62708566 | Msa0613800:CDS | 50.0% | |
| TCCATTGTGGATGTTTCCCG+TGG | + | chr4_2:62708688-62708707 | Msa0613800:CDS | 50.0% | |
| ! | TTTCCCGTGGCTGTTACTTG+TGG | + | chr4_2:62708701-62708720 | Msa0613800:CDS | 50.0% |
| TTGCCACAAGTAACAGCCAC+GGG | - | chr4_2:62708707-62708726 | None:intergenic | 50.0% | |
| TCACCTGGGTCTTTCTCTGA+TGG | - | chr4_2:62708746-62708765 | None:intergenic | 50.0% | |
| GAGAAAGACCCAGGTGATGT+TGG | + | chr4_2:62708749-62708768 | Msa0613800:intron | 50.0% | |
| ! | AGCTAAAGGGAAGCGTGTTC+AGG | + | chr4_2:62709583-62709602 | Msa0613800:CDS | 50.0% |
| ! | AAAGGGAAGCGTGTTCAGGT+AGG | + | chr4_2:62709587-62709606 | Msa0613800:intron | 50.0% |
| !! | AGCACAGTTGTTTTCGTGGG+AGG | + | chr4_2:62709812-62709831 | Msa0613800:CDS | 50.0% |
| ! | TACCTTGTGACGGAGGTGTA+TGG | + | chr4_2:62710106-62710125 | Msa0613800:intron | 50.0% |
| ATCCATACACCTCCGTCACA+AGG | - | chr4_2:62710111-62710130 | None:intergenic | 50.0% | |
| GCCCTGCACAAATATTGTGG+AGG | - | chr4_2:62710211-62710230 | None:intergenic | 50.0% | |
| ACGGAACCTGATGCAGATCT+TGG | + | chr4_2:62710277-62710296 | Msa0613800:CDS | 50.0% | |
| ACTGGACCAAGATCTGCATC+AGG | - | chr4_2:62710286-62710305 | None:intergenic | 50.0% | |
| ! | GTTCAATCTGGGGTCGAAAG+TGG | + | chr4_2:62710458-62710477 | Msa0613800:CDS | 50.0% |
| GGCTAGAACAGTCCTTGAGT+AGG | + | chr4_2:62710843-62710862 | Msa0613800:intron | 50.0% | |
| GTGCATGACAAATAGGTCCC+AGG | + | chr4_2:62710969-62710988 | Msa0613800:intron | 50.0% | |
| ! | TGCCGACATGGATTGCTACA+AGG | + | chr4_2:62711040-62711059 | Msa0613800:CDS | 50.0% |
| !! | CTACTTCTGGTGTTGCTGCT+AGG | + | chr4_2:62711464-62711483 | Msa0613800:CDS | 50.0% |
| CAGCAGTGGAAGGATTCAGT+TGG | + | chr4_2:62712154-62712173 | Msa0613800:CDS | 50.0% | |
| CAGTGGAAGGATTCAGTTGG+CGG | + | chr4_2:62712157-62712176 | Msa0613800:CDS | 50.0% | |
| CTGACTCAGCTTCTCGTGTC+TGG | + | chr4_2:62707584-62707603 | Msa0613800:five_prime_UTR | 55.0% | |
| AGCCGCTGTTGAGAAATGGG+AGG | - | chr4_2:62707855-62707874 | None:intergenic | 55.0% | |
| !! | GAGGTGGTGGAACATGCTTG+TGG | + | chr4_2:62708542-62708561 | Msa0613800:intron | 55.0% |
| GCCACGGGAAACATCCACAA+TGG | - | chr4_2:62708692-62708711 | None:intergenic | 55.0% | |
| ! | GCAGAATTGGCACTGGAAGC+TGG | + | chr4_2:62708999-62709018 | Msa0613800:CDS | 55.0% |
| !! | ACTGGAAGCTGGTTTGCCTG+AGG | + | chr4_2:62709010-62709029 | Msa0613800:CDS | 55.0% |
| !! | CTGGAAGCTGGTTTGCCTGA+GGG | + | chr4_2:62709011-62709030 | Msa0613800:CDS | 55.0% |
| !!! | CTGCTGGTTTTGGAGCTGCT+GGG | + | chr4_2:62709771-62709790 | Msa0613800:CDS | 55.0% |
| !!! | GTTTTGGAGCTGCTGGGCAA+AGG | + | chr4_2:62709777-62709796 | Msa0613800:CDS | 55.0% |
| TCGTGGGAGGTTCACAAGCA+TGG | + | chr4_2:62709825-62709844 | Msa0613800:CDS | 55.0% | |
| !! | CTTACCGGCTTCACAGGCAA+AGG | + | chr4_2:62710418-62710437 | Msa0613800:intron | 55.0% |
| ! | GGCAACAAGGCGTCATTTGC+TGG | + | chr4_2:62711760-62711779 | Msa0613800:CDS | 55.0% |
| ACACGTTGGCGCGTCGTAAC+TGG | - | chr4_2:62708171-62708190 | None:intergenic | 60.0% | |
| !!! | GCTGCTGGTTTTGGAGCTGC+TGG | + | chr4_2:62709770-62709789 | Msa0613800:CDS | 60.0% |
| ! | AGCTGCTGGGCAAAGGTGCA+TGG | + | chr4_2:62709784-62709803 | Msa0613800:CDS | 60.0% |
| CGCTCCTTTGCCTGTGAAGC+CGG | - | chr4_2:62710425-62710444 | None:intergenic | 60.0% | |
| GGCGCCAGACTACTGCTTGA+TGG | + | chr4_2:62710479-62710498 | Msa0613800:CDS | 60.0% | |
| GACTGAGATTGAGGCTGGGC+AGG | + | chr4_2:62711495-62711514 | Msa0613800:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 62707393 | 62712410 | 62707393 | ID=Msa0613800;Name=Msa0613800 |
| chr4_2 | mRNA | 62707393 | 62712410 | 62707393 | ID=Msa0613800-mRNA-1;Parent=Msa0613800;Name=Msa0613800-mRNA-1;_AED=0.10;_eAED=0.10;_QI=297|1|1|1|1|1|17|188|537 |
| chr4_2 | exon | 62707393 | 62707714 | 62707393 | ID=Msa0613800-mRNA-1:exon:17298;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62707807 | 62707973 | 62707807 | ID=Msa0613800-mRNA-1:exon:17299;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62708066 | 62708227 | 62708066 | ID=Msa0613800-mRNA-1:exon:17300;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62708356 | 62708434 | 62708356 | ID=Msa0613800-mRNA-1:exon:17301;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62708543 | 62708761 | 62708543 | ID=Msa0613800-mRNA-1:exon:17302;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62708982 | 62709061 | 62708982 | ID=Msa0613800-mRNA-1:exon:17303;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62709291 | 62709356 | 62709291 | ID=Msa0613800-mRNA-1:exon:17304;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62709554 | 62709604 | 62709554 | ID=Msa0613800-mRNA-1:exon:17305;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62709695 | 62709846 | 62709695 | ID=Msa0613800-mRNA-1:exon:17306;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62710228 | 62710318 | 62710228 | ID=Msa0613800-mRNA-1:exon:17307;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62710434 | 62710514 | 62710434 | ID=Msa0613800-mRNA-1:exon:17308;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62710984 | 62711061 | 62710984 | ID=Msa0613800-mRNA-1:exon:17309;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62711171 | 62711206 | 62711171 | ID=Msa0613800-mRNA-1:exon:17310;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62711312 | 62711355 | 62711312 | ID=Msa0613800-mRNA-1:exon:17311;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62711438 | 62711516 | 62711438 | ID=Msa0613800-mRNA-1:exon:17312;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62711709 | 62711799 | 62711709 | ID=Msa0613800-mRNA-1:exon:17313;Parent=Msa0613800-mRNA-1 |
| chr4_2 | exon | 62712110 | 62712410 | 62712110 | ID=Msa0613800-mRNA-1:exon:17314;Parent=Msa0613800-mRNA-1 |
| chr4_2 | five_prime_UTR | 62707393 | 62707689 | 62707393 | ID=Msa0613800-mRNA-1:five_prime_utr;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62707690 | 62707714 | 62707690 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62707807 | 62707973 | 62707807 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62708066 | 62708227 | 62708066 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62708356 | 62708434 | 62708356 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62708543 | 62708761 | 62708543 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62708982 | 62709061 | 62708982 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62709291 | 62709356 | 62709291 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62709554 | 62709604 | 62709554 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62709695 | 62709846 | 62709695 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62710228 | 62710318 | 62710228 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62710434 | 62710514 | 62710434 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62710984 | 62711061 | 62710984 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62711171 | 62711206 | 62711171 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62711312 | 62711355 | 62711312 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62711438 | 62711516 | 62711438 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62711709 | 62711799 | 62711709 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | CDS | 62712110 | 62712222 | 62712110 | ID=Msa0613800-mRNA-1:cds;Parent=Msa0613800-mRNA-1 |
| chr4_2 | three_prime_UTR | 62712223 | 62712410 | 62712223 | ID=Msa0613800-mRNA-1:three_prime_utr;Parent=Msa0613800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
