Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616710 | XP_013442072.1 | 97.826 | 230 | 5 | 0 | 1 | 230 | 1 | 230 | 9.78e-164 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616710 | A0A072TFE0 | 97.826 | 230 | 5 | 0 | 1 | 230 | 1 | 230 | 4.67e-164 | 461 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610280 | Msa0616710 | 0.805003 | 1.646109e-49 | -8.615850e-47 |
| Msa0616610 | Msa0616710 | 0.977913 | 9.687860e-145 | -8.615850e-47 |
| Msa0616710 | Msa0818440 | 0.826112 | 3.243824e-54 | -8.615850e-47 |
| Msa0616710 | Msa0818550 | 0.804153 | 2.476005e-49 | -8.615850e-47 |
| Msa0616710 | Msa0858910 | 0.802564 | 5.285053e-49 | -8.615850e-47 |
| Msa0616710 | Msa1198450 | 0.824511 | 7.758302e-54 | -8.615850e-47 |
| Msa0243470 | Msa0616710 | 0.801926 | 7.151364e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616710 | MtrunA17_Chr8g0376221 | 97.826 | 230 | 5 | 0 | 1 | 230 | 1 | 230 | 8.99e-168 | 461 |
| Msa0616710 | MtrunA17_Chr8g0376261 | 96.721 | 122 | 4 | 0 | 1 | 122 | 1 | 122 | 1.55e-83 | 245 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616710 | AT1G20225.1 | 53.883 | 206 | 95 | 0 | 24 | 229 | 23 | 228 | 1.54e-80 | 241 |
| Msa0616710 | AT1G76020.1 | 55.708 | 219 | 95 | 1 | 6 | 222 | 2 | 220 | 9.82e-80 | 239 |
| Msa0616710 | AT1G76020.3 | 55.556 | 171 | 74 | 1 | 6 | 174 | 2 | 172 | 1.47e-58 | 183 |
| Msa0616710 | AT1G76020.2 | 55.147 | 136 | 61 | 0 | 87 | 222 | 40 | 175 | 5.58e-49 | 159 |
Find 73 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGATTACAAGAACAATTT+TGG | 0.161304 | 4_2:-66720808 | None:intergenic |
| AGATTCCATTATTGCATTCT+TGG | 0.191845 | 4_2:-66724413 | None:intergenic |
| CATTAATGGCCCAGATTTAA+TGG | 0.221055 | 4_2:+66724343 | Msa0616710:intron |
| TAATGGTACGGTGCCATTAA+TGG | 0.270396 | 4_2:+66724360 | Msa0616710:three_prime_UTR |
| CTTTAACAGGCGGCATTCTT+TGG | 0.273544 | 4_2:+66723596 | Msa0616710:intron |
| TAGCACTTTGGTGTCATTAA+TGG | 0.275070 | 4_2:+66724244 | Msa0616710:three_prime_UTR |
| TAGCACTTTGGTGCCATTAA+TGG | 0.275309 | 4_2:-66724373 | None:intergenic |
| TTAATGGAAAGTATTTAATT+TGG | 0.281268 | 4_2:+66720628 | None:intergenic |
| TTTGTTTGTTTCTAGTTTCT+AGG | 0.312416 | 4_2:+66720665 | Msa0616710:five_prime_UTR |
| GCCCTGACAGCGCTGATTCA+TGG | 0.321870 | 4_2:+66721121 | Msa0616710:CDS |
| AGAGGCATTCTTCAAGTATC+AGG | 0.343425 | 4_2:+66722270 | Msa0616710:CDS |
| GGCCATGAATCAGCGCTGTC+AGG | 0.354911 | 4_2:-66721123 | None:intergenic |
| TCTAATCAATCAGTTATATA+CGG | 0.369646 | 4_2:-66720869 | None:intergenic |
| AACATTATTGACCCATTGAT+TGG | 0.376408 | 4_2:+66724076 | Msa0616710:CDS |
| CACTGTATCTGCTGATCAAT+AGG | 0.385510 | 4_2:+66724209 | Msa0616710:three_prime_UTR |
| CAAAGAGGGTTAGAGATGTC+AGG | 0.401495 | 4_2:+66720943 | Msa0616710:exon |
| TTGTACCAAGAATGCAATAA+TGG | 0.409468 | 4_2:+66724408 | Msa0616710:three_prime_UTR |
| TCAGCGCTGTCAGGGCATAA+AGG | 0.428310 | 4_2:-66721114 | None:intergenic |
| CTTGCTTGCGTTGCAGTCGC+TGG | 0.428343 | 4_2:+66720990 | Msa0616710:CDS |
| TATCATACTTCTATCAAGAA+TGG | 0.446875 | 4_2:+66723698 | Msa0616710:CDS |
| TCTTACCTTAAAAGAAATCC+TGG | 0.448490 | 4_2:-66723750 | None:intergenic |
| ATGCTCTTAACTACAGTGAT+TGG | 0.450656 | 4_2:+66724050 | Msa0616710:CDS |
| GCTGCTTCAAGAGGAGTGTC+TGG | 0.461731 | 4_2:+66723980 | Msa0616710:CDS |
| TTAAGAGCATTTCCTGCATC+GGG | 0.463376 | 4_2:-66724037 | None:intergenic |
| TGAAGAATGCCTCTAGCAAT+GGG | 0.483868 | 4_2:-66722261 | None:intergenic |
| CCTTAAAAGAAATCCTGGTC+AGG | 0.485521 | 4_2:-66723745 | None:intergenic |
| ACGAATCCGTCGTATTTCTT+CGG | 0.491616 | 4_2:-66721033 | None:intergenic |
| CTGATCAATAGGTGTTTGTA+CGG | 0.492221 | 4_2:+66724220 | Msa0616710:three_prime_UTR |
| CATTAGATAATTAATGTATC+CGG | 0.494527 | 4_2:+66720752 | Msa0616710:five_prime_UTR |
| TTCTTGGTACAAACACGGGT+GGG | 0.496284 | 4_2:-66724397 | None:intergenic |
| GGATTCGTGTTGCCCGATGC+AGG | 0.498005 | 4_2:+66724025 | Msa0616710:CDS |
| TTGAAGAATGCCTCTAGCAA+TGG | 0.503848 | 4_2:-66722262 | None:intergenic |
| TTTGTGTGGCCCAGATTTAA+CGG | 0.509027 | 4_2:-66724274 | None:intergenic |
| ATCCGTCGTATTTCTTCGGT+GGG | 0.511988 | 4_2:-66721029 | None:intergenic |
| GATTAGAGAACGAACGGTAG+AGG | 0.514766 | 4_2:-66721207 | None:intergenic |
| CTCTTAACTACAGTGATTGG+AGG | 0.515770 | 4_2:+66724053 | Msa0616710:CDS |
| TGCATTCTTGGTACAAACAC+GGG | 0.515896 | 4_2:-66724401 | None:intergenic |
| CTTGCGTTGCAGTCGCTGGT+CGG | 0.515983 | 4_2:+66720994 | Msa0616710:CDS |
| GTTAAGAGCATTTCCTGCAT+CGG | 0.519058 | 4_2:-66724038 | None:intergenic |
| AATCCGTCGTATTTCTTCGG+TGG | 0.534773 | 4_2:-66721030 | None:intergenic |
| ACACGGGTGGGGTAGCACTT+TGG | 0.536701 | 4_2:-66724385 | None:intergenic |
| GCTCTAGATAAGTTCCGCGT+TGG | 0.547951 | 4_2:-66723623 | None:intergenic |
| CTAACTCCGACCACCTGACC+AGG | 0.550513 | 4_2:+66723732 | Msa0616710:CDS |
| GCGGAGAGACAAGGCAAAGA+GGG | 0.557936 | 4_2:+66720929 | Msa0616710:five_prime_UTR |
| GCCATGAATCAGCGCTGTCA+GGG | 0.560993 | 4_2:-66721122 | None:intergenic |
| AGTTTACCTCAGCTACAGTT+GGG | 0.567465 | 4_2:+66723669 | Msa0616710:CDS |
| AAGTTTACCTCAGCTACAGT+TGG | 0.568593 | 4_2:+66723668 | Msa0616710:CDS |
| AAAGAGGGTTAGAGATGTCA+GGG | 0.570918 | 4_2:+66720944 | Msa0616710:exon |
| TGTTTGTACGGGTAGCACTT+TGG | 0.573231 | 4_2:+66724232 | Msa0616710:three_prime_UTR |
| TCTTGGTACAAACACGGGTG+GGG | 0.577477 | 4_2:-66724396 | None:intergenic |
| CTGCAGTATGCTGCTTCAAG+AGG | 0.577685 | 4_2:+66723971 | Msa0616710:intron |
| AGAGAACGAACGGTAGAGGA+AGG | 0.579079 | 4_2:-66721203 | None:intergenic |
| TATTGTATTGCGGAGAGACA+AGG | 0.586581 | 4_2:+66720920 | Msa0616710:five_prime_UTR |
| TTGCATTCTTGGTACAAACA+CGG | 0.589423 | 4_2:-66724402 | None:intergenic |
| ATACGTGCTATAATTATGAC+CGG | 0.597503 | 4_2:-66720771 | None:intergenic |
| AGAAATCCTGGTCAGGTGGT+CGG | 0.601600 | 4_2:-66723738 | None:intergenic |
| GCGTTGCAGTCGCTGGTCGG+AGG | 0.605051 | 4_2:+66720997 | Msa0616710:CDS |
| TGCTACATTCCCATTGCTAG+AGG | 0.605297 | 4_2:+66722252 | Msa0616710:CDS |
| ATGGCCCAGATTTAATGGTA+CGG | 0.613847 | 4_2:+66724348 | Msa0616710:intron |
| ATTCTTGGTACAAACACGGG+TGG | 0.617439 | 4_2:-66724398 | None:intergenic |
| ACGCAACGAAAGCATTGTCA+TGG | 0.627698 | 4_2:-66722192 | None:intergenic |
| TGATCAATAGGTGTTTGTAC+GGG | 0.633892 | 4_2:+66724221 | Msa0616710:three_prime_UTR |
| GGGTTAGAGATGTCAGGGAA+CGG | 0.638574 | 4_2:+66720949 | Msa0616710:exon |
| TGCGGAGAGACAAGGCAAAG+AGG | 0.639915 | 4_2:+66720928 | Msa0616710:five_prime_UTR |
| AGAGTTCCCAACTGTAGCTG+AGG | 0.641687 | 4_2:-66723675 | None:intergenic |
| AAGATACTGATATTGTATTG+CGG | 0.642473 | 4_2:+66720910 | Msa0616710:five_prime_UTR |
| TAAAAGAAATCCTGGTCAGG+TGG | 0.643649 | 4_2:-66723742 | None:intergenic |
| AACAACGAGGGAAACACGAG+AGG | 0.659397 | 4_2:-66721175 | None:intergenic |
| GTGGCCCAGATTTAACGGCA+CGG | 0.666964 | 4_2:-66724269 | None:intergenic |
| CATTCTTTGGTGCTCCAACG+CGG | 0.671653 | 4_2:+66723609 | Msa0616710:CDS |
| AGGAAGGAGATGAACAACGA+GGG | 0.716920 | 4_2:-66721187 | None:intergenic |
| ATCCCACCGAAGAAATACGA+CGG | 0.719573 | 4_2:+66721027 | Msa0616710:CDS |
| GAGGAAGGAGATGAACAACG+AGG | 0.779581 | 4_2:-66721188 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTCAATTATGTAT+TGG | + | chr4_2:66722308-66722327 | Msa0616710:intron | 10.0% |
| !! | ATAGTTGCAAAATTTATAAA+AGG | - | chr4_2:66721478-66721497 | None:intergenic | 15.0% |
| !!! | TTTTTGAATAATTCAAAAAC+TGG | + | chr4_2:66721608-66721627 | Msa0616710:intron | 15.0% |
| !!! | TTTTGAATAATTCAAAAACT+GGG | + | chr4_2:66721609-66721628 | Msa0616710:intron | 15.0% |
| !!! | TTTCATAATTGAATTGTTTT+CGG | + | chr4_2:66722126-66722145 | Msa0616710:intron | 15.0% |
| !!! | ATGAATTTTTCTTCATATTT+TGG | + | chr4_2:66722157-66722176 | Msa0616710:intron | 15.0% |
| !! | AAAAAAAAAAAGACAAACTA+GGG | - | chr4_2:66722575-66722594 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAGACAAACT+AGG | - | chr4_2:66722576-66722595 | None:intergenic | 15.0% |
| !!! | GATATGAAAAATAGTAATTT+TGG | - | chr4_2:66723852-66723871 | None:intergenic | 15.0% |
| !! | CATTAGATAATTAATGTATC+CGG | + | chr4_2:66720752-66720771 | Msa0616710:five_prime_UTR | 20.0% |
| !! | TCTAATCAATCAGTTATATA+CGG | - | chr4_2:66720872-66720891 | None:intergenic | 20.0% |
| !! | TAAAAGTTACTAAAAGTGAA+GGG | - | chr4_2:66721232-66721251 | None:intergenic | 20.0% |
| !!! | TTATATGTTGTTTTTACTCA+AGG | + | chr4_2:66721808-66721827 | Msa0616710:intron | 20.0% |
| !!! | ATTTTCAATTATGTATTGGT+TGG | + | chr4_2:66722312-66722331 | Msa0616710:intron | 20.0% |
| !!! | GTACTTTTAATTTTAAGCTT+AGG | + | chr4_2:66722500-66722519 | Msa0616710:intron | 20.0% |
| !! | AAGAGTTAATATTACACATA+AGG | - | chr4_2:66723352-66723371 | None:intergenic | 20.0% |
| !!! | TAACTTTTCTAATAGAAAGA+AGG | - | chr4_2:66723541-66723560 | None:intergenic | 20.0% |
| !! | TTCTATTAGAAAAGTTATTG+TGG | + | chr4_2:66723544-66723563 | Msa0616710:intron | 20.0% |
| !!! | AGAAAAAAGTATTTCTTGAA+AGG | - | chr4_2:66723921-66723940 | None:intergenic | 20.0% |
| !!! | TTTGTTTGTTTCTAGTTTCT+AGG | + | chr4_2:66720665-66720684 | Msa0616710:five_prime_UTR | 25.0% |
| !! | ACTGATTACAAGAACAATTT+TGG | - | chr4_2:66720811-66720830 | None:intergenic | 25.0% |
| ! | AAGATACTGATATTGTATTG+CGG | + | chr4_2:66720910-66720929 | Msa0616710:five_prime_UTR | 25.0% |
| ! | GTAAAAGTTACTAAAAGTGA+AGG | - | chr4_2:66721233-66721252 | None:intergenic | 25.0% |
| !! | AGTAACTTTTACACTTTGTT+TGG | + | chr4_2:66721241-66721260 | Msa0616710:intron | 25.0% |
| ! | TGAGAAGAGAGAATAAAAAT+AGG | + | chr4_2:66721350-66721369 | Msa0616710:intron | 25.0% |
| ! | AAGAGAGAATAAAAATAGGT+GGG | + | chr4_2:66721354-66721373 | Msa0616710:intron | 25.0% |
| ! | GCAATGGCATAAATATAAAT+TGG | - | chr4_2:66721445-66721464 | None:intergenic | 25.0% |
| ! | ATACCATGCATATTATAATG+AGG | + | chr4_2:66721496-66721515 | Msa0616710:intron | 25.0% |
| ! | AAACCTCATTATAATATGCA+TGG | - | chr4_2:66721502-66721521 | None:intergenic | 25.0% |
| ! | ATGCATATTATAATGAGGTT+TGG | + | chr4_2:66721501-66721520 | Msa0616710:intron | 25.0% |
| ! | TGCATATTATAATGAGGTTT+GGG | + | chr4_2:66721502-66721521 | Msa0616710:intron | 25.0% |
| ! | CACAACATTTAAACTATTGA+GGG | - | chr4_2:66722683-66722702 | None:intergenic | 25.0% |
| !! | TTGCATTGATATAATAACAG+GGG | - | chr4_2:66722812-66722831 | None:intergenic | 25.0% |
| !! | CTTGCATTGATATAATAACA+GGG | - | chr4_2:66722813-66722832 | None:intergenic | 25.0% |
| !! | TCTTGCATTGATATAATAAC+AGG | - | chr4_2:66722814-66722833 | None:intergenic | 25.0% |
| ! | TCAATCACAATGTGATTAAA+AGG | - | chr4_2:66722923-66722942 | None:intergenic | 25.0% |
| ! | TAAACATGAATGTCTAGATT+TGG | - | chr4_2:66723007-66723026 | None:intergenic | 25.0% |
| ! | ATATGTTCCAACAATTTGAA+TGG | - | chr4_2:66723046-66723065 | None:intergenic | 25.0% |
| ! | TATTCATAACAGGTATGATA+TGG | - | chr4_2:66723117-66723136 | None:intergenic | 25.0% |
| ! | ATACCTGTTATGAATATTGA+AGG | + | chr4_2:66723121-66723140 | Msa0616710:intron | 25.0% |
| ! | TTTCCTTCAATATTCATAAC+AGG | - | chr4_2:66723127-66723146 | None:intergenic | 25.0% |
| ! | AATATTGAAGGAAAACAACA+TGG | + | chr4_2:66723133-66723152 | Msa0616710:intron | 25.0% |
| ! | TTTGAATGCAAATCTTTCTT+GGG | + | chr4_2:66723255-66723274 | Msa0616710:intron | 25.0% |
| ! | AATTTATGCACATTCGAATT+TGG | + | chr4_2:66723287-66723306 | Msa0616710:intron | 25.0% |
| ! | TGTGTCTTTGATATTTGAAA+AGG | + | chr4_2:66723314-66723333 | Msa0616710:intron | 25.0% |
| !! | AATCCTATTTTGCTACAAAT+TGG | - | chr4_2:66723381-66723400 | None:intergenic | 25.0% |
| ! | TATCATACTTCTATCAAGAA+TGG | + | chr4_2:66723698-66723717 | Msa0616710:CDS | 25.0% |
| ! | TTCGTGTACTAGAATATAAT+TGG | + | chr4_2:66723809-66723828 | Msa0616710:intron | 25.0% |
| !!! | AAAAGTATTTCTTGAAAGGA+GGG | - | chr4_2:66723917-66723936 | None:intergenic | 25.0% |
| !!! | AAAAAGTATTTCTTGAAAGG+AGG | - | chr4_2:66723918-66723937 | None:intergenic | 25.0% |
| ! | AATCCATTGACATAGAAAAA+AGG | - | chr4_2:66724010-66724029 | None:intergenic | 25.0% |
| !! | TTTTTACAACAAGTAGTGAA+GGG | - | chr4_2:66724131-66724150 | None:intergenic | 25.0% |
| !! | ATTTTTACAACAAGTAGTGA+AGG | - | chr4_2:66724132-66724151 | None:intergenic | 25.0% |
| !!! | CTACTTGTTGTAAAAATTGT+AGG | + | chr4_2:66724135-66724154 | Msa0616710:exon | 25.0% |
| ATACGTGCTATAATTATGAC+CGG | - | chr4_2:66720774-66720793 | None:intergenic | 30.0% | |
| !! | ACTTTTACACTTTGTTTGGT+TGG | + | chr4_2:66721245-66721264 | Msa0616710:intron | 30.0% |
| GAAGAGAGAATAAAAATAGG+TGG | + | chr4_2:66721353-66721372 | Msa0616710:intron | 30.0% | |
| AAAAGGATGTGAAATAGCAA+TGG | - | chr4_2:66721461-66721480 | None:intergenic | 30.0% | |
| AAAGAATGTACAGTTGTTGT+TGG | - | chr4_2:66721538-66721557 | None:intergenic | 30.0% | |
| !!! | AAACTCAGCTTTTGAGTTTA+TGG | - | chr4_2:66721582-66721601 | None:intergenic | 30.0% |
| GAAAATGAGAAGAGAGAAAT+AGG | - | chr4_2:66721964-66721983 | None:intergenic | 30.0% | |
| CAGATTATTAACTCTGTGTT+TGG | - | chr4_2:66721996-66722015 | None:intergenic | 30.0% | |
| !! | CTATGTTTGGCTTTAAATCT+TGG | + | chr4_2:66722340-66722359 | Msa0616710:intron | 30.0% |
| !!! | AGCTTTTTTGAAACAGTCTA+CGG | - | chr4_2:66722394-66722413 | None:intergenic | 30.0% |
| !! | AAGCTGTTTTCAAATTTGCA+TGG | + | chr4_2:66722409-66722428 | Msa0616710:intron | 30.0% |
| !! | AGCTGTTTTCAAATTTGCAT+GGG | + | chr4_2:66722410-66722429 | Msa0616710:intron | 30.0% |
| GTACTACAAAACAAACAATG+AGG | - | chr4_2:66722484-66722503 | None:intergenic | 30.0% | |
| ACATTTAAACTATTGAGGGA+TGG | - | chr4_2:66722679-66722698 | None:intergenic | 30.0% | |
| CCACAACATTTAAACTATTG+AGG | - | chr4_2:66722684-66722703 | None:intergenic | 30.0% | |
| CCTCAATAGTTTAAATGTTG+TGG | + | chr4_2:66722681-66722700 | Msa0616710:intron | 30.0% | |
| TTAAATGTTGTGGCAATTCT+AGG | + | chr4_2:66722691-66722710 | Msa0616710:intron | 30.0% | |
| TAAATGTTGTGGCAATTCTA+GGG | + | chr4_2:66722692-66722711 | Msa0616710:intron | 30.0% | |
| TATCAATGCAAGAAAGAACA+TGG | + | chr4_2:66722821-66722840 | Msa0616710:intron | 30.0% | |
| !!! | TTTTCATTCCCTTTGTTTTC+TGG | + | chr4_2:66722867-66722886 | Msa0616710:intron | 30.0% |
| ! | AACTTTTCATTATGTGAACC+CGG | - | chr4_2:66722978-66722997 | None:intergenic | 30.0% |
| TTGTCAACCATTCAAATTGT+TGG | + | chr4_2:66723036-66723055 | Msa0616710:intron | 30.0% | |
| AATGTGAACAATTGAGACAT+AGG | - | chr4_2:66723178-66723197 | None:intergenic | 30.0% | |
| CTTTGAATGCAAATCTTTCT+TGG | + | chr4_2:66723254-66723273 | Msa0616710:intron | 30.0% | |
| TTGAATGCAAATCTTTCTTG+GGG | + | chr4_2:66723256-66723275 | Msa0616710:intron | 30.0% | |
| TAGCCAATTTGTAGCAAAAT+AGG | + | chr4_2:66723375-66723394 | Msa0616710:intron | 30.0% | |
| TCTAATAGAAAGAAGGAAGA+AGG | - | chr4_2:66723534-66723553 | None:intergenic | 30.0% | |
| TCTTACCTTAAAAGAAATCC+TGG | - | chr4_2:66723753-66723772 | None:intergenic | 30.0% | |
| TTTCCGTGTCTTAAATCAAA+GGG | - | chr4_2:66723879-66723898 | None:intergenic | 30.0% | |
| ! | TTTTCCGTGTCTTAAATCAA+AGG | - | chr4_2:66723880-66723899 | None:intergenic | 30.0% |
| !!! | ACACCTTTTTTCTATGTCAA+TGG | + | chr4_2:66724004-66724023 | Msa0616710:CDS | 30.0% |
| AACATTATTGACCCATTGAT+TGG | + | chr4_2:66724076-66724095 | Msa0616710:CDS | 30.0% | |
| ! | TTTTCTTCACACCAATCAAT+GGG | - | chr4_2:66724090-66724109 | None:intergenic | 30.0% |
| TTGTACCAAGAATGCAATAA+TGG | + | chr4_2:66724408-66724427 | Msa0616710:three_prime_UTR | 30.0% | |
| AGATTCCATTATTGCATTCT+TGG | - | chr4_2:66724416-66724435 | None:intergenic | 30.0% | |
| !!! | TGATGAAGAGCTTTTTTGAG+AGG | - | chr4_2:66721150-66721169 | None:intergenic | 35.0% |
| GTTAGTCAAGAGAGAAATAG+AGG | + | chr4_2:66721288-66721307 | Msa0616710:intron | 35.0% | |
| AGTTCCAAACTTCTCTTGTT+TGG | + | chr4_2:66721314-66721333 | Msa0616710:intron | 35.0% | |
| CTATCCAAACAAGAGAAGTT+TGG | - | chr4_2:66721321-66721340 | None:intergenic | 35.0% | |
| ACAAGTGAGGAGAAGTAAAA+AGG | - | chr4_2:66721388-66721407 | None:intergenic | 35.0% | |
| TGAGAGAGAATAAGAGAAGA+GGG | - | chr4_2:66721941-66721960 | None:intergenic | 35.0% | |
| TTGGTTGGATATGCTATGTT+TGG | + | chr4_2:66722327-66722346 | Msa0616710:intron | 35.0% | |
| AAATTTGCATGGGACTTTCA+AGG | + | chr4_2:66722420-66722439 | Msa0616710:intron | 35.0% | |
| TCGGAAATATCTTAACCGAA+TGG | - | chr4_2:66722532-66722551 | None:intergenic | 35.0% | |
| ! | ATTAGTTTCCAAGTTGCACA+TGG | - | chr4_2:66722631-66722650 | None:intergenic | 35.0% |
| TATATGATCCTACTCGACAT+GGG | - | chr4_2:66722654-66722673 | None:intergenic | 35.0% | |
| TTATATGATCCTACTCGACA+TGG | - | chr4_2:66722655-66722674 | None:intergenic | 35.0% | |
| ! | TGACACATATTTCTGCACAA+TGG | - | chr4_2:66723087-66723106 | None:intergenic | 35.0% |
| !! | TAGCAAAATAGGATTAGCCA+TGG | + | chr4_2:66723386-66723405 | Msa0616710:intron | 35.0% |
| !! | AAATAGGATTAGCCATGGAA+CGG | + | chr4_2:66723391-66723410 | Msa0616710:intron | 35.0% |
| ATACACTAGATTTAGTGAGC+AGG | - | chr4_2:66723573-66723592 | None:intergenic | 35.0% | |
| TCTAGTGTATACCCTTTAAC+AGG | + | chr4_2:66723583-66723602 | Msa0616710:intron | 35.0% | |
| ACTGCAGTTCGAAGAAAATT+AGG | - | chr4_2:66723958-66723977 | None:intergenic | 35.0% | |
| ATGCTCTTAACTACAGTGAT+TGG | + | chr4_2:66724050-66724069 | Msa0616710:CDS | 35.0% | |
| ! | CTTTTCTTCACACCAATCAA+TGG | - | chr4_2:66724091-66724110 | None:intergenic | 35.0% |
| CTGATCAATAGGTGTTTGTA+CGG | + | chr4_2:66724220-66724239 | Msa0616710:three_prime_UTR | 35.0% | |
| TGATCAATAGGTGTTTGTAC+GGG | + | chr4_2:66724221-66724240 | Msa0616710:three_prime_UTR | 35.0% | |
| !! | TAGCACTTTGGTGTCATTAA+TGG | + | chr4_2:66724244-66724263 | Msa0616710:three_prime_UTR | 35.0% |
| AAACACATTGTCATTGCATC+TGG | + | chr4_2:66724294-66724313 | Msa0616710:intron | 35.0% | |
| AACACATTGTCATTGCATCT+GGG | + | chr4_2:66724295-66724314 | Msa0616710:intron | 35.0% | |
| !! | ATCTATCTTGGTGCCATTAA+TGG | + | chr4_2:66724329-66724348 | Msa0616710:intron | 35.0% |
| CATTAAATCTGGGCCATTAA+TGG | - | chr4_2:66724345-66724364 | None:intergenic | 35.0% | |
| CATTAATGGCCCAGATTTAA+TGG | + | chr4_2:66724343-66724362 | Msa0616710:intron | 35.0% | |
| TTGCATTCTTGGTACAAACA+CGG | - | chr4_2:66724405-66724424 | None:intergenic | 35.0% | |
| TATTGTATTGCGGAGAGACA+AGG | + | chr4_2:66720920-66720939 | Msa0616710:five_prime_UTR | 40.0% | |
| AAAGAGGGTTAGAGATGTCA+GGG | + | chr4_2:66720944-66720963 | Msa0616710:exon | 40.0% | |
| ACGAATCCGTCGTATTTCTT+CGG | - | chr4_2:66721036-66721055 | None:intergenic | 40.0% | |
| !!! | TGAAGAGCTTTTTTGAGAGG+TGG | - | chr4_2:66721147-66721166 | None:intergenic | 40.0% |
| TGAAGGGATTAGAGAACGAA+CGG | - | chr4_2:66721216-66721235 | None:intergenic | 40.0% | |
| AGGAGAAGTAAAAAGGTGGT+AGG | - | chr4_2:66721381-66721400 | None:intergenic | 40.0% | |
| AGTGAGGAGAAGTAAAAAGG+TGG | - | chr4_2:66721385-66721404 | None:intergenic | 40.0% | |
| ATGAGAGAAGTGAAGTTGAG+AGG | + | chr4_2:66721418-66721437 | Msa0616710:intron | 40.0% | |
| TGAGAGAAGTGAAGTTGAGA+GGG | + | chr4_2:66721419-66721438 | Msa0616710:intron | 40.0% | |
| GTGAGAGAGAATAAGAGAAG+AGG | - | chr4_2:66721942-66721961 | None:intergenic | 40.0% | |
| CTGTTTCATAAGCACATGAG+AGG | + | chr4_2:66722013-66722032 | Msa0616710:intron | 40.0% | |
| TGAAGAATGCCTCTAGCAAT+GGG | - | chr4_2:66722264-66722283 | None:intergenic | 40.0% | |
| TTGAAGAATGCCTCTAGCAA+TGG | - | chr4_2:66722265-66722284 | None:intergenic | 40.0% | |
| !! | AGAGGCATTCTTCAAGTATC+AGG | + | chr4_2:66722270-66722289 | Msa0616710:CDS | 40.0% |
| GCATTCTTCAAGTATCAGGT+TGG | + | chr4_2:66722274-66722293 | Msa0616710:intron | 40.0% | |
| GCTAAAAGCTGACTGTTAAC+AGG | - | chr4_2:66722449-66722468 | None:intergenic | 40.0% | |
| CTAGAATGCAGCATATGACT+CGG | - | chr4_2:66722551-66722570 | None:intergenic | 40.0% | |
| GAGTATTTCCATGTGCAACT+TGG | + | chr4_2:66722620-66722639 | Msa0616710:intron | 40.0% | |
| AAACTAATCCCATGTCGAGT+AGG | + | chr4_2:66722643-66722662 | Msa0616710:intron | 40.0% | |
| TCTTTCATGCACAGACTACA+CGG | + | chr4_2:66722725-66722744 | Msa0616710:intron | 40.0% | |
| CATGCACACCAGAAAACAAA+GGG | - | chr4_2:66722878-66722897 | None:intergenic | 40.0% | |
| ACATGCACACCAGAAAACAA+AGG | - | chr4_2:66722879-66722898 | None:intergenic | 40.0% | |
| AGTGTATACCCTTTAACAGG+CGG | + | chr4_2:66723586-66723605 | Msa0616710:intron | 40.0% | |
| AAAGAATGCCGCCTGTTAAA+GGG | - | chr4_2:66723597-66723616 | None:intergenic | 40.0% | |
| AAGTTTACCTCAGCTACAGT+TGG | + | chr4_2:66723668-66723687 | Msa0616710:CDS | 40.0% | |
| AGTTTACCTCAGCTACAGTT+GGG | + | chr4_2:66723669-66723688 | Msa0616710:CDS | 40.0% | |
| TAAAAGAAATCCTGGTCAGG+TGG | - | chr4_2:66723745-66723764 | None:intergenic | 40.0% | |
| CCTTAAAAGAAATCCTGGTC+AGG | - | chr4_2:66723748-66723767 | None:intergenic | 40.0% | |
| ! | CCTGACCAGGATTTCTTTTA+AGG | + | chr4_2:66723745-66723764 | Msa0616710:CDS | 40.0% |
| ! | CAGCCCTTTGATTTAAGACA+CGG | + | chr4_2:66723873-66723892 | Msa0616710:intron | 40.0% |
| !! | TTAAGAGCATTTCCTGCATC+GGG | - | chr4_2:66724040-66724059 | None:intergenic | 40.0% |
| !! | GTTAAGAGCATTTCCTGCAT+CGG | - | chr4_2:66724041-66724060 | None:intergenic | 40.0% |
| CTCTTAACTACAGTGATTGG+AGG | + | chr4_2:66724053-66724072 | Msa0616710:CDS | 40.0% | |
| CACTGTATCTGCTGATCAAT+AGG | + | chr4_2:66724209-66724228 | Msa0616710:three_prime_UTR | 40.0% | |
| TTTGTGTGGCCCAGATTTAA+CGG | - | chr4_2:66724277-66724296 | None:intergenic | 40.0% | |
| GCAATGACAATGTGTTTGTG+TGG | - | chr4_2:66724291-66724310 | None:intergenic | 40.0% | |
| ACCAAGATAGATGTGTTGTG+TGG | - | chr4_2:66724321-66724340 | None:intergenic | 40.0% | |
| ATGGCCCAGATTTAATGGTA+CGG | + | chr4_2:66724348-66724367 | Msa0616710:intron | 40.0% | |
| !! | TAATGGTACGGTGCCATTAA+TGG | + | chr4_2:66724360-66724379 | Msa0616710:three_prime_UTR | 40.0% |
| !! | TAGCACTTTGGTGCCATTAA+TGG | - | chr4_2:66724376-66724395 | None:intergenic | 40.0% |
| TGCATTCTTGGTACAAACAC+GGG | - | chr4_2:66724404-66724423 | None:intergenic | 40.0% | |
| CAAAGAGGGTTAGAGATGTC+AGG | + | chr4_2:66720943-66720962 | Msa0616710:exon | 45.0% | |
| ATCCCACCGAAGAAATACGA+CGG | + | chr4_2:66721027-66721046 | Msa0616710:CDS | 45.0% | |
| ATCCGTCGTATTTCTTCGGT+GGG | - | chr4_2:66721032-66721051 | None:intergenic | 45.0% | |
| AATCCGTCGTATTTCTTCGG+TGG | - | chr4_2:66721033-66721052 | None:intergenic | 45.0% | |
| AGGAAGGAGATGAACAACGA+GGG | - | chr4_2:66721190-66721209 | None:intergenic | 45.0% | |
| GATTAGAGAACGAACGGTAG+AGG | - | chr4_2:66721210-66721229 | None:intergenic | 45.0% | |
| CATGTTTCTCGTCACAAGTG+AGG | - | chr4_2:66721401-66721420 | None:intergenic | 45.0% | |
| !! | ACGCAACGAAAGCATTGTCA+TGG | - | chr4_2:66722195-66722214 | None:intergenic | 45.0% |
| TGCTACATTCCCATTGCTAG+AGG | + | chr4_2:66722252-66722271 | Msa0616710:CDS | 45.0% | |
| CTCTGAGTGACTTTGCATGT+TGG | + | chr4_2:66722365-66722384 | Msa0616710:intron | 45.0% | |
| AAGCTTAGGCTGCTTCCATT+CGG | + | chr4_2:66722514-66722533 | Msa0616710:intron | 45.0% | |
| CGAGTCATATGCTGCATTCT+AGG | + | chr4_2:66722549-66722568 | Msa0616710:intron | 45.0% | |
| TGAGCTTTGCATCTGATTCC+TGG | + | chr4_2:66722940-66722959 | Msa0616710:intron | 45.0% | |
| GAGCTTTGCATCTGATTCCT+GGG | + | chr4_2:66722941-66722960 | Msa0616710:intron | 45.0% | |
| AGCTTTGCATCTGATTCCTG+GGG | + | chr4_2:66722942-66722961 | Msa0616710:intron | 45.0% | |
| TGTGAGAGAAAACCGTTCCA+TGG | - | chr4_2:66723406-66723425 | None:intergenic | 45.0% | |
| CAAAGAATGCCGCCTGTTAA+AGG | - | chr4_2:66723598-66723617 | None:intergenic | 45.0% | |
| CTTTAACAGGCGGCATTCTT+TGG | + | chr4_2:66723596-66723615 | Msa0616710:intron | 45.0% | |
| TGTTTGTACGGGTAGCACTT+TGG | + | chr4_2:66724232-66724251 | Msa0616710:three_prime_UTR | 45.0% | |
| GCCACACAACACATCTATCT+TGG | + | chr4_2:66724317-66724336 | Msa0616710:intron | 45.0% | |
| GGCACCGTACCATTAAATCT+GGG | - | chr4_2:66724355-66724374 | None:intergenic | 45.0% | |
| TGGCACCGTACCATTAAATC+TGG | - | chr4_2:66724356-66724375 | None:intergenic | 45.0% | |
| TTCTTGGTACAAACACGGGT+GGG | - | chr4_2:66724400-66724419 | None:intergenic | 45.0% | |
| ATTCTTGGTACAAACACGGG+TGG | - | chr4_2:66724401-66724420 | None:intergenic | 45.0% | |
| GGGTTAGAGATGTCAGGGAA+CGG | + | chr4_2:66720949-66720968 | Msa0616710:exon | 50.0% | |
| AACAACGAGGGAAACACGAG+AGG | - | chr4_2:66721178-66721197 | None:intergenic | 50.0% | |
| GAGGAAGGAGATGAACAACG+AGG | - | chr4_2:66721191-66721210 | None:intergenic | 50.0% | |
| AGAGAACGAACGGTAGAGGA+AGG | - | chr4_2:66721206-66721225 | None:intergenic | 50.0% | |
| !! | CATTCTTTGGTGCTCCAACG+CGG | + | chr4_2:66723609-66723628 | Msa0616710:CDS | 50.0% |
| ! | GCTCTAGATAAGTTCCGCGT+TGG | - | chr4_2:66723626-66723645 | None:intergenic | 50.0% |
| AGAGTTCCCAACTGTAGCTG+AGG | - | chr4_2:66723678-66723697 | None:intergenic | 50.0% | |
| AGAAATCCTGGTCAGGTGGT+CGG | - | chr4_2:66723741-66723760 | None:intergenic | 50.0% | |
| ! | CTGCAGTATGCTGCTTCAAG+AGG | + | chr4_2:66723971-66723990 | Msa0616710:intron | 50.0% |
| TCTTGGTACAAACACGGGTG+GGG | - | chr4_2:66724399-66724418 | None:intergenic | 50.0% | |
| TGCGGAGAGACAAGGCAAAG+AGG | + | chr4_2:66720928-66720947 | Msa0616710:five_prime_UTR | 55.0% | |
| GCGGAGAGACAAGGCAAAGA+GGG | + | chr4_2:66720929-66720948 | Msa0616710:five_prime_UTR | 55.0% | |
| TCAGCGCTGTCAGGGCATAA+AGG | - | chr4_2:66721117-66721136 | None:intergenic | 55.0% | |
| GCCATGAATCAGCGCTGTCA+GGG | - | chr4_2:66721125-66721144 | None:intergenic | 55.0% | |
| !! | GCTGCTTCAAGAGGAGTGTC+TGG | + | chr4_2:66723980-66723999 | Msa0616710:CDS | 55.0% |
| ! | TGGCACCGTGCCGTTAAATC+TGG | + | chr4_2:66724264-66724283 | Msa0616710:intron | 55.0% |
| ! | GGCACCGTGCCGTTAAATCT+GGG | + | chr4_2:66724265-66724284 | Msa0616710:intron | 55.0% |
| GTGGCCCAGATTTAACGGCA+CGG | - | chr4_2:66724272-66724291 | None:intergenic | 55.0% | |
| CTTGCTTGCGTTGCAGTCGC+TGG | + | chr4_2:66720990-66721009 | Msa0616710:CDS | 60.0% | |
| CTTGCGTTGCAGTCGCTGGT+CGG | + | chr4_2:66720994-66721013 | Msa0616710:CDS | 60.0% | |
| !! | GCCCTGACAGCGCTGATTCA+TGG | + | chr4_2:66721121-66721140 | Msa0616710:CDS | 60.0% |
| GGCCATGAATCAGCGCTGTC+AGG | - | chr4_2:66721126-66721145 | None:intergenic | 60.0% | |
| TTCCTGGGGCAGTTCAGTGC+CGG | + | chr4_2:66722956-66722975 | Msa0616710:intron | 60.0% | |
| CTAACTCCGACCACCTGACC+AGG | + | chr4_2:66723732-66723751 | Msa0616710:CDS | 60.0% | |
| GGATTCGTGTTGCCCGATGC+AGG | + | chr4_2:66724025-66724044 | Msa0616710:CDS | 60.0% | |
| ACACGGGTGGGGTAGCACTT+TGG | - | chr4_2:66724388-66724407 | None:intergenic | 60.0% | |
| TCCTGGGGCAGTTCAGTGCC+GGG | + | chr4_2:66722957-66722976 | Msa0616710:intron | 65.0% | |
| GCGTTGCAGTCGCTGGTCGG+AGG | + | chr4_2:66720997-66721016 | Msa0616710:CDS | 70.0% | |
| ! | ACCCGGCACTGAACTGCCCC+AGG | - | chr4_2:66722961-66722980 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 66720631 | 66724435 | 66720631 | ID=Msa0616710;Name=Msa0616710 |
| chr4_2 | mRNA | 66720631 | 66724435 | 66720631 | ID=Msa0616710-mRNA-1;Parent=Msa0616710;Name=Msa0616710-mRNA-1;_AED=0.07;_eAED=0.07;_QI=327|1|1|1|0.75|0.6|5|214|230 |
| chr4_2 | exon | 66720631 | 66721214 | 66720631 | ID=Msa0616710-mRNA-1:exon:18979;Parent=Msa0616710-mRNA-1 |
| chr4_2 | exon | 66722189 | 66722291 | 66722189 | ID=Msa0616710-mRNA-1:exon:18980;Parent=Msa0616710-mRNA-1 |
| chr4_2 | exon | 66723605 | 66723766 | 66723605 | ID=Msa0616710-mRNA-1:exon:18981;Parent=Msa0616710-mRNA-1 |
| chr4_2 | exon | 66723977 | 66724282 | 66723977 | ID=Msa0616710-mRNA-1:exon:18982;Parent=Msa0616710-mRNA-1 |
| chr4_2 | exon | 66724357 | 66724435 | 66724357 | ID=Msa0616710-mRNA-1:exon:18983;Parent=Msa0616710-mRNA-1 |
| chr4_2 | five_prime_UTR | 66720631 | 66720957 | 66720631 | ID=Msa0616710-mRNA-1:five_prime_utr;Parent=Msa0616710-mRNA-1 |
| chr4_2 | CDS | 66720958 | 66721214 | 66720958 | ID=Msa0616710-mRNA-1:cds;Parent=Msa0616710-mRNA-1 |
| chr4_2 | CDS | 66722189 | 66722291 | 66722189 | ID=Msa0616710-mRNA-1:cds;Parent=Msa0616710-mRNA-1 |
| chr4_2 | CDS | 66723605 | 66723766 | 66723605 | ID=Msa0616710-mRNA-1:cds;Parent=Msa0616710-mRNA-1 |
| chr4_2 | CDS | 66723977 | 66724147 | 66723977 | ID=Msa0616710-mRNA-1:cds;Parent=Msa0616710-mRNA-1 |
| chr4_2 | three_prime_UTR | 66724148 | 66724282 | 66724148 | ID=Msa0616710-mRNA-1:three_prime_utr;Parent=Msa0616710-mRNA-1 |
| chr4_2 | three_prime_UTR | 66724357 | 66724435 | 66724357 | ID=Msa0616710-mRNA-1:three_prime_utr;Parent=Msa0616710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
