AlfalfaGEDB | Msa0818440

M. sativa cultivar zhongmu-4 / Msa0818440

KEGG: K00522
GO: GO:0003674 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006873 GO:0006875 GO:0006879 GO:0006880 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051235 GO:0051238 GO:0051641 GO:0051651 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0097577 GO:0098771
PFAM: PF00210.27

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0818440	XP_003616685.1	98.394	249	4	0	1	249	1	249	2.01e-179	503

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0818440	sp\|Q41709\|FRI2_VIGUN	78.313	249	50	2	1	247	1	247	2.14e-140	397

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0818440	G7K283	98.394	249	4	0	1	249	1	249	9.59e-180	503

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008850	Msa0818440	0.810899	9.163075e-51	-8.615850e-47
Msa0014410	Msa0818440	0.820240	7.615693e-53	-8.615850e-47
Msa0018470	Msa0818440	0.839146	1.886318e-57	-8.615850e-47
Msa0035290	Msa0818440	0.865360	6.247497e-65	-8.615850e-47
Msa0035400	Msa0818440	0.876083	1.850369e-68	-8.615850e-47
Msa0064550	Msa0818440	0.835999	1.209805e-56	-8.615850e-47
Msa0067150	Msa0818440	0.810037	1.406512e-50	-8.615850e-47
Msa0109490	Msa0818440	0.815025	1.141741e-51	-8.615850e-47
Msa0616610	Msa0818440	0.827413	1.586334e-54	-8.615850e-47
Msa0616710	Msa0818440	0.826112	3.243824e-54	-8.615850e-47
Msa0617830	Msa0818440	0.815612	8.457728e-52	-8.615850e-47
Msa0628100	Msa0818440	0.805090	1.579027e-49	-8.615850e-47
Msa0629440	Msa0818440	-0.817997	2.466341e-52	-8.615850e-47
Msa0656680	Msa0818440	0.812940	3.292664e-51	-8.615850e-47
Msa0667070	Msa0818440	-0.818471	1.926982e-52	-8.615850e-47
Msa0676100	Msa0818440	0.807652	4.553429e-50	-8.615850e-47
Msa0714340	Msa0818440	0.802515	5.409738e-49	-8.615850e-47
Msa0714380	Msa0818440	0.808852	2.526182e-50	-8.615850e-47
Msa0715510	Msa0818440	-0.805214	1.487466e-49	-8.615850e-47
Msa0746980	Msa0818440	0.853447	2.375302e-61	-8.615850e-47
Msa0798460	Msa0818440	0.801104	1.053873e-48	-8.615850e-47
Msa0801360	Msa0818440	0.841761	3.906412e-58	-8.615850e-47
Msa0818440	Msa0818550	0.978331	1.328851e-145	-8.615850e-47
Msa0818440	Msa0828570	0.846942	1.581752e-59	-8.615850e-47
Msa0818440	Msa0839830	0.837845	4.087254e-57	-8.615850e-47
Msa0818440	Msa0858910	0.953055	6.351671e-111	-8.615850e-47
Msa0818440	Msa0899700	0.803001	4.292961e-49	-8.615850e-47
Msa0818440	Msa0899730	0.839414	1.607248e-57	-8.615850e-47
Msa0818440	Msa0922340	0.802952	4.395350e-49	-8.615850e-47
Msa0818440	Msa0964650	0.846020	2.822312e-59	-8.615850e-47
Msa0818440	Msa0964680	0.803632	3.177731e-49	-8.615850e-47
Msa0818440	Msa0984000	0.803384	3.577155e-49	-8.615850e-47
Msa0818440	Msa0999590	0.830730	2.490743e-55	-8.615850e-47
Msa0818440	Msa1040730	-0.827420	1.579729e-54	-8.615850e-47
Msa0818440	Msa1043870	0.805020	1.632665e-49	-8.615850e-47
Msa0818440	Msa1082820	-0.805604	1.231988e-49	-8.615850e-47
Msa0818440	Msa1141250	-0.816474	5.427047e-52	-8.615850e-47
Msa0818440	Msa1149750	0.808550	2.930701e-50	-8.615850e-47
Msa0818440	Msa1153000	-0.835269	1.850983e-56	-8.615850e-47
Msa0818440	Msa1180050	0.854595	1.108377e-61	-8.615850e-47
Msa0818440	Msa1198450	0.826623	2.450568e-54	-8.615850e-47
Msa0818440	Msa1204600	-0.816821	4.538751e-52	-8.615850e-47
Msa0818440	Msa1211390	0.819237	1.290596e-52	-8.615850e-47
Msa0818440	Msa1212760	0.811632	6.353756e-51	-8.615850e-47
Msa0818440	Msa1232270	0.869191	3.723708e-66	-8.615850e-47
Msa0818440	Msa1241820	0.843980	1.003598e-58	-8.615850e-47
Msa0818440	Msa1252070	0.808650	2.790410e-50	-8.615850e-47
Msa0818440	Msa1270770	0.851146	1.073366e-60	-8.615850e-47
Msa0818440	Msa1292730	0.800798	1.217072e-48	-8.615850e-47
Msa0818440	Msa1313050	0.836133	1.118466e-56	-8.615850e-47
Msa0818440	Msa1335970	-0.828060	1.108776e-54	-8.615850e-47
Msa0818440	Msa1349810	0.808801	2.591097e-50	-8.615850e-47
Msa0818440	Msa1378470	0.829266	5.667539e-55	-8.615850e-47
Msa0818440	Msa1388520	0.810476	1.130852e-50	-8.615850e-47
Msa0818440	Msa1412620	-0.801397	9.177638e-49	-8.615850e-47
Msa0818440	Msa1421870	0.836675	8.143417e-57	-8.615850e-47
Msa0818440	Msa1447560	0.817318	3.508707e-52	-8.615850e-47
Msa0129360	Msa0818440	0.865649	5.067870e-65	-8.615850e-47
Msa0138390	Msa0818440	-0.820856	5.498101e-53	-8.615850e-47
Msa0154270	Msa0818440	0.820677	6.043536e-53	-8.615850e-47
Msa0155610	Msa0818440	0.809137	2.195137e-50	-8.615850e-47
Msa0158610	Msa0818440	0.844383	7.820635e-59	-8.615850e-47
Msa0164360	Msa0818440	0.810754	9.849404e-51	-8.615850e-47
Msa0176040	Msa0818440	0.844533	7.129570e-59	-8.615850e-47
Msa0181410	Msa0818440	0.813259	2.802069e-51	-8.615850e-47
Msa0198440	Msa0818440	0.838189	3.334144e-57	-8.615850e-47
Msa0200840	Msa0818440	0.811510	6.752348e-51	-8.615850e-47
Msa0200870	Msa0818440	0.808947	2.411343e-50	-8.615850e-47
Msa0218650	Msa0818440	-0.804864	1.760687e-49	-8.615850e-47
Msa0225880	Msa0818440	0.875233	3.620632e-68	-8.615850e-47
Msa0377280	Msa0818440	0.848132	7.446149e-60	-8.615850e-47
Msa0401340	Msa0818440	0.807296	5.416168e-50	-8.615850e-47
Msa0404690	Msa0818440	0.848002	8.085961e-60	-8.615850e-47
Msa0412190	Msa0818440	0.803686	3.096763e-49	-8.615850e-47
Msa0418430	Msa0818440	0.837184	6.037967e-57	-8.615850e-47
Msa0448120	Msa0818440	0.819037	1.432845e-52	-8.615850e-47
Msa0462590	Msa0818440	0.849766	2.619670e-60	-8.615850e-47
Msa0465800	Msa0818440	0.853248	2.708937e-61	-8.615850e-47
Msa0472740	Msa0818440	0.856392	3.319454e-62	-8.615850e-47
Msa0240450	Msa0818440	-0.817974	2.495606e-52	-8.615850e-47
Msa0242260	Msa0818440	-0.802381	5.763500e-49	-8.615850e-47
Msa0243470	Msa0818440	0.822028	2.948305e-53	-8.615850e-47
Msa0253160	Msa0818440	0.806991	6.286831e-50	-8.615850e-47
Msa0260470	Msa0818440	0.866911	2.016867e-65	-8.615850e-47
Msa0265580	Msa0818440	0.828449	8.933430e-55	-8.615850e-47
Msa0278670	Msa0818440	0.835973	1.228066e-56	-8.615850e-47
Msa0281940	Msa0818440	0.805358	1.387314e-49	-8.615850e-47
Msa0291940	Msa0818440	0.800147	1.651914e-48	-8.615850e-47
Msa0300310	Msa0818440	-0.803142	4.014657e-49	-8.615850e-47
Msa0303440	Msa0818440	0.827536	1.481791e-54	-8.615850e-47
Msa0303500	Msa0818440	0.812754	3.615792e-51	-8.615850e-47
Msa0304110	Msa0818440	0.871797	5.195326e-67	-8.615850e-47
Msa0309650	Msa0818440	-0.806745	7.085194e-50	-8.615850e-47
Msa0318070	Msa0818440	0.840932	6.455175e-58	-8.615850e-47
Msa0341190	Msa0818440	0.866349	3.042926e-65	-8.615850e-47
Msa0358290	Msa0818440	0.848773	4.950232e-60	-8.615850e-47
Msa0530950	Msa0818440	0.824791	6.664135e-54	-8.615850e-47
Msa0545230	Msa0818440	0.805988	1.023049e-49	-8.615850e-47
Msa0576600	Msa0818440	0.815064	1.119316e-51	-8.615850e-47
Msa0593810	Msa0818440	0.807306	5.392107e-50	-8.615850e-47
Msa0600820	Msa0818440	0.802509	5.424240e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0818440	MtrunA17_Chr5g0437531	98.394	249	4	0	1	249	1	249	0.0	503
Msa0818440	MtrunA17_Chr7g0243241	75.622	201	49	0	48	248	55	255	4.44e-107	310
Msa0818440	MtrunA17_Chr4g0005581	77.157	197	45	0	48	244	54	250	2.15e-106	308
Msa0818440	MtrunA17_Chr5g0431291	68.462	130	37	1	120	249	11	136	3.43e-59	184

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0818440	AT3G11050.1	72.581	248	57	4	2	245	11	251	3.65e-124	353
Msa0818440	AT2G40300.1	80.583	206	39	1	38	243	53	257	8.76e-118	337
Msa0818440	AT5G01600.1	65.863	249	69	2	12	244	7	255	1.77e-114	328
Msa0818440	AT3G56090.1	79.798	198	40	0	50	247	62	259	8.14e-112	322
Msa0818440	AT3G61010.1	74.000	50	13	0	91	140	369	418	7.32e-18	82.4
Msa0818440	AT3G61010.3	74.000	50	13	0	91	140	369	418	7.32e-18	82.4

Find 87 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCATCCGAAGTTCTGTATT+TGG	0.179431	5_3:+54325992	None:intergenic
GAACTTGATTTGTTCATTAA+TGG	0.196228	5_3:+54329531	None:intergenic
TTATAATTTCATTCGGAAAT+AGG	0.202232	5_3:+54326163	None:intergenic
CACTTTGTTGTTCCTATTTG+TGG	0.245330	5_3:+54326027	None:intergenic
GCTTCAACGTGGAAGTAAAT+TGG	0.267790	5_3:-54329716	Msa0818440:CDS
AACCCACATAAACTTTATTA+AGG	0.271238	5_3:+54326624	None:intergenic
AAAGACCGGTGATGTGAATT+TGG	0.292838	5_3:-54327150	Msa0818440:CDS
ATTGAGACTACTTGATCTAA+TGG	0.328186	5_3:+54326264	None:intergenic
TGAATCACACAATCACTCTT+TGG	0.332003	5_3:+54325863	None:intergenic
TTGATGTAATTTCAGGTGTC+TGG	0.348601	5_3:-54326798	Msa0818440:intron
GTGCAAAGCGTCACCCTTAT+CGG	0.353274	5_3:+54328434	None:intergenic
ATCAAGTAGTCTCAATATTA+TGG	0.353507	5_3:-54326257	Msa0818440:three_prime_UTR
TGAGAAATTGATGGAATATC+AGG	0.354314	5_3:-54329153	Msa0818440:intron
ATTTCCGAATGAAATTATAA+AGG	0.362733	5_3:-54326160	Msa0818440:three_prime_UTR
CAGCTTTGAGAAGCATGGTT+AGG	0.367473	5_3:+54329794	None:intergenic
TAAGGGCACTATTGTACATT+GGG	0.372407	5_3:-54326341	Msa0818440:three_prime_UTR
GTCTTACATTGTGCAGGTTA+AGG	0.377061	5_3:+54327300	None:intergenic
AAAGAATCTTGAGGAACAAT+AGG	0.383929	5_3:+54329589	None:intergenic
TGCGACCACATTCCACAAAT+AGG	0.413508	5_3:-54326039	Msa0818440:three_prime_UTR
TGTGAATTTGGCAGACTTTG+TGG	0.418668	5_3:-54327138	Msa0818440:CDS
TATTGTACATTGGGGAGCTT+AGG	0.430057	5_3:-54326332	Msa0818440:three_prime_UTR
CTTTCCTTTATAATTTCATT+CGG	0.430633	5_3:+54326156	None:intergenic
TGAAACTGAAAATGTTGGAT+TGG	0.436129	5_3:+54329870	None:intergenic
TGAGTTTGATCATGCCGATA+AGG	0.436295	5_3:-54328448	Msa0818440:CDS
ACCATTGTCTTCTTAAAATG+AGG	0.436504	5_3:+54325948	None:intergenic
ACGCCTTAATAAAGTTTATG+TGG	0.441352	5_3:-54326627	Msa0818440:three_prime_UTR
TGCTCTTCATGCTACGAAAG+AGG	0.447386	5_3:-54326099	Msa0818440:three_prime_UTR
AGCTTTGAGAAGCATGGTTA+GGG	0.455565	5_3:+54329795	None:intergenic
GAGTTTGATCATGCCGATAA+GGG	0.461004	5_3:-54328447	Msa0818440:CDS
TTCTTAGATTCACTAGTGCT+TGG	0.461164	5_3:+54326505	None:intergenic
TTACTTAAAAGTAGCACAAA+TGG	0.461519	5_3:+54326395	None:intergenic
CACCTAGAGTATTCAAGTCC+TGG	0.465233	5_3:-54326070	Msa0818440:three_prime_UTR
GGAAATGAAACTGAAAATGT+TGG	0.467929	5_3:+54329865	None:intergenic
CCACAGGTTGCCTCAAAGAC+CGG	0.468429	5_3:-54327164	Msa0818440:intron
TAAATTACTTTCAAGTCGGA+TGG	0.478912	5_3:-54325722	Msa0818440:three_prime_UTR
ATTCACATCACCGGTCTTTG+AGG	0.489139	5_3:+54327154	None:intergenic
AGGGCATGCTGAGAAATTGA+TGG	0.491044	5_3:-54329162	Msa0818440:CDS
AATTTCATTCGGAAATAGGT+TGG	0.491759	5_3:+54326167	None:intergenic
CACACAATCACTCTTTGGAT+TGG	0.492644	5_3:+54325868	None:intergenic
ATGTAAGAGAAGATTGAAGT+TGG	0.497855	5_3:-54325746	Msa0818440:three_prime_UTR
ACAGATACAAATGACTAAAG+TGG	0.498850	5_3:+54326717	None:intergenic
CAGAACGAAAATGGAGAGAA+AGG	0.499257	5_3:+54329826	None:intergenic
GAAACTGAAAATGTTGGATT+GGG	0.501120	5_3:+54329871	None:intergenic
AATGGAACTTGCATTGTCCT+TGG	0.503326	5_3:-54327345	Msa0818440:CDS
TTCAGTTAGTAGTTGATCCA+TGG	0.506347	5_3:-54326581	Msa0818440:three_prime_UTR
CGCCTTAATAAAGTTTATGT+GGG	0.510516	5_3:-54326626	Msa0818440:three_prime_UTR
ACCTAGAGTATTCAAGTCCT+GGG	0.513871	5_3:-54326069	Msa0818440:three_prime_UTR
ACTTGAATACTCTAGGTGTC+AGG	0.516987	5_3:+54326075	None:intergenic
CAGATACAAATGACTAAAGT+GGG	0.526697	5_3:+54326718	None:intergenic
AAACATGTCTTACATTGTGC+AGG	0.531800	5_3:+54327294	None:intergenic
TATTGACTAGAACTAGTAGT+TGG	0.533563	5_3:-54326672	Msa0818440:three_prime_UTR
TACAGCAGCTTTGAGAAGCA+TGG	0.535205	5_3:+54329789	None:intergenic
CTCATTTGTTAGCTTCTCCA+AGG	0.537044	5_3:+54327328	None:intergenic
TCGTAGCAGAAACAGCGATT+CGG	0.538135	5_3:+54329692	None:intergenic
GAAAGGAAAATAAAATTCAG+AGG	0.538150	5_3:+54329843	None:intergenic
AGAGATAATGTTGCGCTGAA+AGG	0.541910	5_3:-54329343	Msa0818440:CDS
GTCTGCCAAATTCACATCAC+CGG	0.543362	5_3:+54327145	None:intergenic
TTACTTCCACGTTGAAGCAA+CGG	0.548255	5_3:+54329721	None:intergenic
ATAAGGGCACTATTGTACAT+TGG	0.554626	5_3:-54326342	Msa0818440:three_prime_UTR
AAATTACTTTCAAGTCGGAT+GGG	0.556558	5_3:-54325721	Msa0818440:three_prime_UTR
TGGTTAAATTACTTTCAAGT+CGG	0.559722	5_3:-54325726	Msa0818440:three_prime_UTR
ATCGCTGTTTCTGCTACGAA+AGG	0.563174	5_3:-54329688	Msa0818440:CDS
AAAGGAAAATAAAATTCAGA+GGG	0.564376	5_3:+54329844	None:intergenic
GTTGCTCAGCTAAGAAGAGT+TGG	0.565145	5_3:-54326930	Msa0818440:CDS
GATGGGACATGCGTCATACA+AGG	0.567180	5_3:-54325704	Msa0818440:three_prime_UTR
AGAAGAGTTGGCAAAGGACA+TGG	0.569821	5_3:-54326918	Msa0818440:intron
GAATCTAGTGAAGAGGAAAG+AGG	0.571340	5_3:-54329182	Msa0818440:CDS
TTGTTCCTATTTGTGGAATG+TGG	0.575799	5_3:+54326034	None:intergenic
GATAAGGGTGACGCTTTGCA+CGG	0.580509	5_3:-54328432	Msa0818440:intron
ATAAAGGAAAGATAGAAACT+TGG	0.584379	5_3:-54326144	Msa0818440:three_prime_UTR
AATCTAGTGAAGAGGAAAGA+GGG	0.584769	5_3:-54329181	Msa0818440:CDS
AGTTAGTAGTTGATCCATGG+TGG	0.592027	5_3:-54326578	Msa0818440:three_prime_UTR
TGACGAGCTAAAGAATCTTG+AGG	0.605682	5_3:+54329580	None:intergenic
AAGAGCCAAATACAGAACTT+CGG	0.608489	5_3:-54325997	Msa0818440:three_prime_UTR
AGATAACGAAAGAGAATGTG+AGG	0.617923	5_3:+54326216	None:intergenic
TCTTAGCTGAGCAACATACT+CGG	0.619174	5_3:+54326938	None:intergenic
ACATAAACTTTATTAAGGCG+TGG	0.619896	5_3:+54326629	None:intergenic
ACAAAACACCGGTTAAAACA+CGG	0.624694	5_3:+54329653	None:intergenic
TGTGGTCGCATGTGAAACCC+AGG	0.633519	5_3:+54326052	None:intergenic
ACCCAGGACTTGAATACTCT+AGG	0.635924	5_3:+54326068	None:intergenic
AAAAGGTTCAAACAAAACAC+CGG	0.645626	5_3:+54329642	None:intergenic
CAGCTAAGAAGAGTTGGCAA+AGG	0.650592	5_3:-54326924	Msa0818440:CDS
TGATTGTGTGATTCACAACA+CGG	0.652671	5_3:-54325855	Msa0818440:three_prime_UTR
TTGATTCCGTTGCTTCAACG+TGG	0.658320	5_3:-54329727	Msa0818440:CDS
GCATGATCAAACTCAGAGAG+CGG	0.671716	5_3:+54328456	None:intergenic
GATTGTGTGATTCACAACAC+GGG	0.675307	5_3:-54325854	Msa0818440:three_prime_UTR
AAGGGCACTATTGTACATTG+GGG	0.691661	5_3:-54326340	Msa0818440:three_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TGTTTTAATTTATTTTGTTT+TGG	-	chr5_3:54326287-54326306	Msa0818440:three_prime_UTR	10.0%
!!!	AATTTGACTATTTTTTAAAT+CGG	-	chr5_3:54326505-54326524	Msa0818440:three_prime_UTR	10.0%
!!	ATTTACTTTACAAAATATTT+CGG	+	chr5_3:54328021-54328040	None:intergenic	10.0%
!!!	AAATTTTTGAATTGTTAATA+AGG	-	chr5_3:54329228-54329247	Msa0818440:intron	10.0%
!!!	AATTTTTGAATTGTTAATAA+GGG	-	chr5_3:54329229-54329248	Msa0818440:intron	10.0%
!!!	TTTTGTTTTGGTTTTAATTT+TGG	-	chr5_3:54326299-54326318	Msa0818440:three_prime_UTR	15.0%
!!!	TTTTGTTTATAGGTTTTTTA+AGG	-	chr5_3:54326383-54326402	Msa0818440:three_prime_UTR	15.0%
!!	TAGTCAAATTTCATTAAATT+GGG	+	chr5_3:54326495-54326514	None:intergenic	15.0%
!!	ATAGTCAAATTTCATTAAAT+TGG	+	chr5_3:54326496-54326515	None:intergenic	15.0%
!!	ATATTACTCTTAACAAAAAA+TGG	-	chr5_3:54326702-54326721	Msa0818440:three_prime_UTR	15.0%
!!!	TGTTTTATTTTTAGAACAAA+AGG	-	chr5_3:54327075-54327094	Msa0818440:intron	15.0%
!!!	GTTTTATTTTTAGAACAAAA+GGG	-	chr5_3:54327076-54327095	Msa0818440:intron	15.0%
!!!	TTTTATTTTTAGAACAAAAG+GGG	-	chr5_3:54327077-54327096	Msa0818440:intron	15.0%
!!	CTAAAAATAAAATGGAAATA+TGG	+	chr5_3:54328526-54328545	None:intergenic	15.0%
!!!	TCCATTTTATTTTTAGTTTA+AGG	-	chr5_3:54328530-54328549	Msa0818440:intron	15.0%
!!!	CCATTTTATTTTTAGTTTAA+GGG	-	chr5_3:54328531-54328550	Msa0818440:intron	15.0%
!!!	ATCATTATTTTTCTATTCAT+AGG	-	chr5_3:54328605-54328624	Msa0818440:intron	15.0%
!!	AAAGGAAAATAAAATTCAGA+GGG	+	chr5_3:54325746-54325765	None:intergenic	20.0%
!!!	GATTATGTTGTTTTGTTTAT+AGG	-	chr5_3:54326373-54326392	Msa0818440:three_prime_UTR	20.0%
!!	TTTATTATATACCGTTGTTA+TGG	+	chr5_3:54326747-54326766	None:intergenic	20.0%
!!	GGTATATAATAAATCACAAA+AGG	-	chr5_3:54326754-54326773	Msa0818440:exon	20.0%
!!	AAGATAATTGATGAATTTGT+GGG	-	chr5_3:54327345-54327364	Msa0818440:CDS	20.0%
!!	CCCTTAAACTAAAAATAAAA+TGG	+	chr5_3:54328534-54328553	None:intergenic	20.0%
!!!	ATTATTTTTCTATTCATAGG+TGG	-	chr5_3:54328608-54328627	Msa0818440:intron	20.0%
!!!	TTTTAAAGTGTTAACTTATG+TGG	-	chr5_3:54328761-54328780	Msa0818440:intron	20.0%
!!	TTATAATTTCATTCGGAAAT+AGG	+	chr5_3:54329427-54329446	None:intergenic	20.0%
!!	ATTTCCGAATGAAATTATAA+AGG	-	chr5_3:54329427-54329446	Msa0818440:intron	20.0%
!!	CTTTCCTTTATAATTTCATT+CGG	+	chr5_3:54329434-54329453	None:intergenic	20.0%
!	GAAAGGAAAATAAAATTCAG+AGG	+	chr5_3:54325747-54325766	None:intergenic	25.0%
!!!	GAACTTGATTTGTTCATTAA+TGG	+	chr5_3:54326059-54326078	None:intergenic	25.0%
!	TCAATAGAATACCATAACAA+CGG	-	chr5_3:54326733-54326752	Msa0818440:three_prime_UTR	25.0%
!	TACTAACTTAGAAACATAAG+TGG	-	chr5_3:54326781-54326800	Msa0818440:CDS	25.0%
!	GTGTTAGATAATAGGTTATT+GGG	+	chr5_3:54326821-54326840	None:intergenic	25.0%
!	AGTGTTAGATAATAGGTTAT+TGG	+	chr5_3:54326822-54326841	None:intergenic	25.0%
!!!	ACTTATTTTTGTTGCCTTAT+TGG	-	chr5_3:54327015-54327034	Msa0818440:intron	25.0%
!	TAGATCATTTGTTCTGTAAT+TGG	-	chr5_3:54327197-54327216	Msa0818440:intron	25.0%
!	GAAGATAATTGATGAATTTG+TGG	-	chr5_3:54327344-54327363	Msa0818440:CDS	25.0%
!!!	ACTAGAATCCTTAGTTTTAT+AGG	-	chr5_3:54327653-54327672	Msa0818440:intron	25.0%
!!!	CTAGAATCCTTAGTTTTATA+GGG	-	chr5_3:54327654-54327673	Msa0818440:intron	25.0%
!!!	TAGAATCCTTAGTTTTATAG+GGG	-	chr5_3:54327655-54327674	Msa0818440:intron	25.0%
!	TGATTGTCGAAACTATAAAA+CGG	+	chr5_3:54327834-54327853	None:intergenic	25.0%
!	TGGGTATATCATAATTGTAT+TGG	+	chr5_3:54327870-54327889	None:intergenic	25.0%
!	TACAATTATGATATACCCAA+AGG	-	chr5_3:54327871-54327890	Msa0818440:intron	25.0%
!	CTTAATGATTACAAGAAACA+TGG	+	chr5_3:54327982-54328001	None:intergenic	25.0%
!!	CATAAATGTAATCTGAAATC+TGG	+	chr5_3:54328049-54328068	None:intergenic	25.0%
!	TACAAAACTAGTAATTAGAG+GGG	+	chr5_3:54328082-54328101	None:intergenic	25.0%
!	CTACAAAACTAGTAATTAGA+GGG	+	chr5_3:54328083-54328102	None:intergenic	25.0%
!	TCTACAAAACTAGTAATTAG+AGG	+	chr5_3:54328084-54328103	None:intergenic	25.0%
!!!	ATACTCGGATATTTTTTTGA+TGG	+	chr5_3:54328637-54328656	None:intergenic	25.0%
!	AGTTAGAAAAATAATGTGCA+TGG	+	chr5_3:54328715-54328734	None:intergenic	25.0%
!	AACCCACATAAACTTTATTA+AGG	+	chr5_3:54328966-54328985	None:intergenic	25.0%
!	TACTAACTGAAAAATAGCAA+TGG	+	chr5_3:54328997-54329016	None:intergenic	25.0%
!	TTACTTAAAAGTAGCACAAA+TGG	+	chr5_3:54329195-54329214	None:intergenic	25.0%
!!!	GCTACTTTTAAGTAATTTTG+TGG	-	chr5_3:54329200-54329219	Msa0818440:intron	25.0%
!	ATCAAGTAGTCTCAATATTA+TGG	-	chr5_3:54329330-54329349	Msa0818440:intron	25.0%
!	ATAAAGGAAAGATAGAAACT+TGG	-	chr5_3:54329443-54329462	Msa0818440:intron	25.0%
!!	CTTGGTCTAATAAAATTTTC+TGG	-	chr5_3:54329461-54329480	Msa0818440:intron	25.0%
!!	ATTGTAGCTTTTACATAAAC+AGG	+	chr5_3:54329685-54329704	None:intergenic	25.0%
!!	TGGTTAAATTACTTTCAAGT+CGG	-	chr5_3:54329861-54329880	Msa0818440:five_prime_UTR	25.0%
	GAAACTGAAAATGTTGGATT+GGG	+	chr5_3:54325719-54325738	None:intergenic	30.0%
	TGAAACTGAAAATGTTGGAT+TGG	+	chr5_3:54325720-54325739	None:intergenic	30.0%
	GGAAATGAAACTGAAAATGT+TGG	+	chr5_3:54325725-54325744	None:intergenic	30.0%
!!!	AACAATAACCGTGTTTTAAC+CGG	-	chr5_3:54325926-54325945	Msa0818440:three_prime_UTR	30.0%
	AAAAGGTTCAAACAAAACAC+CGG	+	chr5_3:54325948-54325967	None:intergenic	30.0%
!!	TTTGTTTGAACCTTTTGAAG+AGG	-	chr5_3:54325952-54325971	Msa0818440:three_prime_UTR	30.0%
!!	ACCTTTTGAAGAGGTTAAAA+AGG	-	chr5_3:54325961-54325980	Msa0818440:three_prime_UTR	30.0%
!	TCCTTTTTAACCTCTTCAAA+AGG	+	chr5_3:54325965-54325984	None:intergenic	30.0%
	AAAGAATCTTGAGGAACAAT+AGG	+	chr5_3:54326001-54326020	None:intergenic	30.0%
!!	TTTGTTGTTGTTGTTGTTGT+TGG	-	chr5_3:54326159-54326178	Msa0818440:three_prime_UTR	30.0%
!!	TTTTAAGGAATCTAGTGAAG+AGG	-	chr5_3:54326398-54326417	Msa0818440:three_prime_UTR	30.0%
	TGAGAAATTGATGGAATATC+AGG	-	chr5_3:54326434-54326453	Msa0818440:three_prime_UTR	30.0%
	TTGACACCAATAGTAATCTA+AGG	-	chr5_3:54326588-54326607	Msa0818440:three_prime_UTR	30.0%
	ACGTTTCCTTAGATTACTAT+TGG	+	chr5_3:54326597-54326616	None:intergenic	30.0%
!!	CCTTTGAAGTGTTAGATAAT+AGG	+	chr5_3:54326829-54326848	None:intergenic	30.0%
	CCTATTATCTAACACTTCAA+AGG	-	chr5_3:54326826-54326845	Msa0818440:intron	30.0%
!	TGTTAATCAACTGTTAGCTT+TGG	-	chr5_3:54326869-54326888	Msa0818440:intron	30.0%
	CTTTGGTTACTAGATCAATA+AGG	-	chr5_3:54326886-54326905	Msa0818440:intron	30.0%
	AAATTCGACGACTTTCTAAT+CGG	+	chr5_3:54326952-54326971	None:intergenic	30.0%
	TCACAAGATAACTACCAATA+AGG	+	chr5_3:54327032-54327051	None:intergenic	30.0%
!!!	TATTTTTAGAACAAAAGGGG+TGG	-	chr5_3:54327080-54327099	Msa0818440:intron	30.0%
	TCACAATTCAGACTCAATTA+AGG	+	chr5_3:54327258-54327277	None:intergenic	30.0%
	GATTGAACTGAATCAAAAAG+TGG	-	chr5_3:54327436-54327455	Msa0818440:intron	30.0%
!!	TTTTTCAGATCACACTTTCT+TGG	+	chr5_3:54327481-54327500	None:intergenic	30.0%
	GTATTTCCCCTATAAAACTA+AGG	+	chr5_3:54327664-54327683	None:intergenic	30.0%
	GATTGTCGAAACTATAAAAC+GGG	+	chr5_3:54327833-54327852	None:intergenic	30.0%
	ATTATGATATACCCAAAGGA+AGG	-	chr5_3:54327875-54327894	Msa0818440:intron	30.0%
	TTATGATATACCCAAAGGAA+GGG	-	chr5_3:54327876-54327895	Msa0818440:intron	30.0%
	AGAAACATGGTCACAATTAA+GGG	+	chr5_3:54327969-54327988	None:intergenic	30.0%
	AAGAAACATGGTCACAATTA+AGG	+	chr5_3:54327970-54327989	None:intergenic	30.0%
	ACAAAACTAGTAATTAGAGG+GGG	+	chr5_3:54328081-54328100	None:intergenic	30.0%
	TCTTATCTTTATTGCAGCAA+TGG	-	chr5_3:54328224-54328243	Msa0818440:intron	30.0%
!!	AAGACATGTTTGTTGAGTTT+TGG	-	chr5_3:54328305-54328324	Msa0818440:intron	30.0%
	CATACGTAAAGTTAAGAGAA+AGG	+	chr5_3:54328398-54328417	None:intergenic	30.0%
!!	GTTAACACTTTAAAATGCAG+AGG	+	chr5_3:54328756-54328775	None:intergenic	30.0%
	CAGATACAAATGACTAAAGT+GGG	+	chr5_3:54328872-54328891	None:intergenic	30.0%
	ACAGATACAAATGACTAAAG+TGG	+	chr5_3:54328873-54328892	None:intergenic	30.0%
!	TATTGACTAGAACTAGTAGT+TGG	-	chr5_3:54328915-54328934	Msa0818440:intron	30.0%
!!	TTTATTAAGGCGTGGTTTTA+AGG	+	chr5_3:54328953-54328972	None:intergenic	30.0%
	ACATAAACTTTATTAAGGCG+TGG	+	chr5_3:54328961-54328980	None:intergenic	30.0%
	ACGCCTTAATAAAGTTTATG+TGG	-	chr5_3:54328960-54328979	Msa0818440:intron	30.0%
	CGCCTTAATAAAGTTTATGT+GGG	-	chr5_3:54328961-54328980	Msa0818440:intron	30.0%
!!	AAGTTTATGTGGGTTGTTTT+TGG	-	chr5_3:54328971-54328990	Msa0818440:intron	30.0%
!!	GCAAATGTTTTTGATCATGA+TGG	-	chr5_3:54329286-54329305	Msa0818440:intron	30.0%
!!!	GATCTAATGGTTGTTTTAAG+TGG	+	chr5_3:54329313-54329332	None:intergenic	30.0%
	ATTGAGACTACTTGATCTAA+TGG	+	chr5_3:54329326-54329345	None:intergenic	30.0%
	AATTTCATTCGGAAATAGGT+TGG	+	chr5_3:54329423-54329442	None:intergenic	30.0%
!!	TCCTCATTTTAAGAAGACAA+TGG	-	chr5_3:54329638-54329657	Msa0818440:CDS	30.0%
	ACCATTGTCTTCTTAAAATG+AGG	+	chr5_3:54329642-54329661	None:intergenic	30.0%
	ATGTAAGAGAAGATTGAAGT+TGG	-	chr5_3:54329841-54329860	Msa0818440:five_prime_UTR	30.0%
!	TAAATTACTTTCAAGTCGGA+TGG	-	chr5_3:54329865-54329884	Msa0818440:five_prime_UTR	30.0%
!	AAATTACTTTCAAGTCGGAT+GGG	-	chr5_3:54329866-54329885	Msa0818440:five_prime_UTR	30.0%
!	GATTTTGCACAGAACGAAAA+TGG	+	chr5_3:54325773-54325792	None:intergenic	35.0%
!	ACAAAACACCGGTTAAAACA+CGG	+	chr5_3:54325937-54325956	None:intergenic	35.0%
	AATCTAGTGAAGAGGAAAGA+GGG	-	chr5_3:54326406-54326425	Msa0818440:three_prime_UTR	35.0%
	TAATTAATGCCCATGAAGCA+CGG	-	chr5_3:54326528-54326547	Msa0818440:three_prime_UTR	35.0%
!!	TACTATTGGTGTCAATGTGT+CGG	+	chr5_3:54326583-54326602	None:intergenic	35.0%
	AACACTTCAAAGGTTAACAC+AGG	-	chr5_3:54326836-54326855	Msa0818440:intron	35.0%
!!!	GCACGGTTAGTTTCTTTTTT+TGG	-	chr5_3:54327172-54327191	Msa0818440:intron	35.0%
	AATTCAGACTCAATTAAGGC+AGG	+	chr5_3:54327254-54327273	None:intergenic	35.0%
!	TGTGATGTGTGTGGATTTTA+TGG	-	chr5_3:54327273-54327292	Msa0818440:intron	35.0%
	AATTGATGAATTTGTGGGCT+TGG	-	chr5_3:54327350-54327369	Msa0818440:intron	35.0%
!!	TTTCATCAAGTTGAGATTGC+TGG	-	chr5_3:54327560-54327579	Msa0818440:intron	35.0%
	TATGACACAGAAACCAAACT+GGG	-	chr5_3:54327593-54327612	Msa0818440:intron	35.0%
!!	ATCATTACTGATTCCCAGTT+TGG	+	chr5_3:54327609-54327628	None:intergenic	35.0%
	CTTGTGTGACATTAATGTCA+CGG	-	chr5_3:54327683-54327702	Msa0818440:intron	35.0%
	TTGTCATTGCCATTGTATCT+GGG	+	chr5_3:54327759-54327778	None:intergenic	35.0%
	ATTGTCATTGCCATTGTATC+TGG	+	chr5_3:54327760-54327779	None:intergenic	35.0%
	TATGATATACCCAAAGGAAG+GGG	-	chr5_3:54327877-54327896	Msa0818440:intron	35.0%
	ATGATAAATCCCCTTCCTTT+GGG	+	chr5_3:54327889-54327908	None:intergenic	35.0%
	AATGATAAATCCCCTTCCTT+TGG	+	chr5_3:54327890-54327909	None:intergenic	35.0%
	GGAAGGGGATTTATCATTTA+TGG	-	chr5_3:54327892-54327911	Msa0818440:intron	35.0%
	AACAGGGAATCACGATATTA+AGG	+	chr5_3:54327923-54327942	None:intergenic	35.0%
	TAATATCGTGATTCCCTGTT+TGG	-	chr5_3:54327923-54327942	Msa0818440:intron	35.0%
	AATCATTAAGATGTTTGCCC+TGG	-	chr5_3:54327992-54328011	Msa0818440:intron	35.0%
	ACAAAATATTTCGGATGCCA+GGG	+	chr5_3:54328012-54328031	None:intergenic	35.0%
	TACAAAATATTTCGGATGCC+AGG	+	chr5_3:54328013-54328032	None:intergenic	35.0%
	GAAAATCCAATCATCCAATC+AGG	+	chr5_3:54328184-54328203	None:intergenic	35.0%
	AAACATGTCTTACATTGTGC+AGG	+	chr5_3:54328296-54328315	None:intergenic	35.0%
!	CTTTACGTATGTTTTTCCAC+AGG	-	chr5_3:54328407-54328426	Msa0818440:intron	35.0%
!	TTTGTGGAAAGCGAGTTTTT+GGG	-	chr5_3:54328465-54328484	Msa0818440:CDS	35.0%
	AGACACCTGAAATTACATCA+AGG	+	chr5_3:54328790-54328809	None:intergenic	35.0%
!	TTGATGTAATTTCAGGTGTC+TGG	-	chr5_3:54328789-54328808	Msa0818440:intron	35.0%
	TTCAGTTAGTAGTTGATCCA+TGG	-	chr5_3:54329006-54329025	Msa0818440:intron	35.0%
	TTCTTAGATTCACTAGTGCT+TGG	+	chr5_3:54329085-54329104	None:intergenic	35.0%
!!!	ACGACTTTTTTTGCATAGCA+GGG	-	chr5_3:54329145-54329164	Msa0818440:intron	35.0%
!!	ATAAGGGCACTATTGTACAT+TGG	-	chr5_3:54329245-54329264	Msa0818440:intron	35.0%
!!	TAAGGGCACTATTGTACATT+GGG	-	chr5_3:54329246-54329265	Msa0818440:intron	35.0%
	AGATAACGAAAGAGAATGTG+AGG	+	chr5_3:54329374-54329393	None:intergenic	35.0%
	TTGTTCCTATTTGTGGAATG+TGG	+	chr5_3:54329556-54329575	None:intergenic	35.0%
!!	CACTTTGTTGTTCCTATTTG+TGG	+	chr5_3:54329563-54329582	None:intergenic	35.0%
	AAGAGCCAAATACAGAACTT+CGG	-	chr5_3:54329590-54329609	Msa0818440:CDS	35.0%
	TTCATCCGAAGTTCTGTATT+TGG	+	chr5_3:54329598-54329617	None:intergenic	35.0%
	TGAATCACACAATCACTCTT+TGG	+	chr5_3:54329727-54329746	None:intergenic	35.0%
	TGATTGTGTGATTCACAACA+CGG	-	chr5_3:54329732-54329751	Msa0818440:CDS	35.0%
	CAGAACGAAAATGGAGAGAA+AGG	+	chr5_3:54325764-54325783	None:intergenic	40.0%
!!	AGCTTTGAGAAGCATGGTTA+GGG	+	chr5_3:54325795-54325814	None:intergenic	40.0%
	TTACTTCCACGTTGAAGCAA+CGG	+	chr5_3:54325869-54325888	None:intergenic	40.0%
	GCTTCAACGTGGAAGTAAAT+TGG	-	chr5_3:54325871-54325890	Msa0818440:three_prime_UTR	40.0%
	TGACGAGCTAAAGAATCTTG+AGG	+	chr5_3:54326010-54326029	None:intergenic	40.0%
	AGAGATAATGTTGCGCTGAA+AGG	-	chr5_3:54326244-54326263	Msa0818440:three_prime_UTR	40.0%
	GAATCTAGTGAAGAGGAAAG+AGG	-	chr5_3:54326405-54326424	Msa0818440:three_prime_UTR	40.0%
	GTTAATGCAGTTCGTACACA+TGG	+	chr5_3:54326930-54326949	None:intergenic	40.0%
	TGAGTTTGATCATGCCGATA+AGG	-	chr5_3:54327139-54327158	Msa0818440:CDS	40.0%
	GAGTTTGATCATGCCGATAA+GGG	-	chr5_3:54327140-54327159	Msa0818440:CDS	40.0%
	AGTCTGAATTGTGATGTGTG+TGG	-	chr5_3:54327264-54327283	Msa0818440:intron	40.0%
!!	TTTCATCAAGTTGAGCTTGC+TGG	-	chr5_3:54327531-54327550	Msa0818440:intron	40.0%
	CTATGACACAGAAACCAAAC+TGG	-	chr5_3:54327592-54327611	Msa0818440:intron	40.0%
	TGTCACGGTGACATTAAATC+TGG	-	chr5_3:54327698-54327717	Msa0818440:intron	40.0%
	GTCACGGTGACATTAAATCT+GGG	-	chr5_3:54327699-54327718	Msa0818440:intron	40.0%
	ATTAAATCTGGGCCACACAT+TGG	-	chr5_3:54327710-54327729	Msa0818440:intron	40.0%
	TTAAATCTGGGCCACACATT+GGG	-	chr5_3:54327711-54327730	Msa0818440:intron	40.0%
	ATCTAATGTCACCCAATGTG+TGG	+	chr5_3:54327725-54327744	None:intergenic	40.0%
	GTGACATTAGATGTGTTGTG+TGG	-	chr5_3:54327733-54327752	Msa0818440:intron	40.0%
	ACAATGGCAATGACAATGTG+TGG	-	chr5_3:54327763-54327782	Msa0818440:intron	40.0%
	TGTCGAAACTATAAAACGGG+TGG	+	chr5_3:54327830-54327849	None:intergenic	40.0%
	CTGGTATCCAATTCCAAACA+GGG	+	chr5_3:54327939-54327958	None:intergenic	40.0%
	ACATGGTCACAATTAAGGGA+TGG	+	chr5_3:54327965-54327984	None:intergenic	40.0%
	GCAATGAGTAACACAAGATG+TGG	-	chr5_3:54328142-54328161	Msa0818440:intron	40.0%
	GTCACATTGTACTACCTGAT+TGG	-	chr5_3:54328167-54328186	Msa0818440:intron	40.0%
	GTACTACCTGATTGGATGAT+TGG	-	chr5_3:54328175-54328194	Msa0818440:intron	40.0%
	AATGGAACTTGCATTGTCCT+TGG	-	chr5_3:54328242-54328261	Msa0818440:intron	40.0%
!	CTCATTTGTTAGCTTCTCCA+AGG	+	chr5_3:54328262-54328281	None:intergenic	40.0%
	GTCTTACATTGTGCAGGTTA+AGG	+	chr5_3:54328290-54328309	None:intergenic	40.0%
!!!	GTTTGTTGAGTTTTGGTGTC+TGG	-	chr5_3:54328312-54328331	Msa0818440:intron	40.0%
!!!	GAGTTTTGGTGTCTGGTTTA+CGG	-	chr5_3:54328319-54328338	Msa0818440:intron	40.0%
!!!	AGTTTTGGTGTCTGGTTTAC+GGG	-	chr5_3:54328320-54328339	Msa0818440:intron	40.0%
	AAAGACCGGTGATGTGAATT+TGG	-	chr5_3:54328437-54328456	Msa0818440:CDS	40.0%
	TGTGAATTTGGCAGACTTTG+TGG	-	chr5_3:54328449-54328468	Msa0818440:CDS	40.0%
!	CTTTGTGGAAAGCGAGTTTT+TGG	-	chr5_3:54328464-54328483	Msa0818440:CDS	40.0%
	TCTTAGCTGAGCAACATACT+CGG	+	chr5_3:54328652-54328671	None:intergenic	40.0%
	GGCTTCCTTGATGTAATTTC+AGG	-	chr5_3:54328782-54328801	Msa0818440:intron	40.0%
	AGTTAGTAGTTGATCCATGG+TGG	-	chr5_3:54329009-54329028	Msa0818440:intron	40.0%
	AGAAGAAAAACGAACCACCA+TGG	+	chr5_3:54329026-54329045	None:intergenic	40.0%
	TGCAAAAAAAGTCGTGCACT+TGG	+	chr5_3:54329140-54329159	None:intergenic	40.0%
!!!	CACGACTTTTTTTGCATAGC+AGG	-	chr5_3:54329144-54329163	Msa0818440:intron	40.0%
!!	AAGGGCACTATTGTACATTG+GGG	-	chr5_3:54329247-54329266	Msa0818440:intron	40.0%
	TATTGTACATTGGGGAGCTT+AGG	-	chr5_3:54329255-54329274	Msa0818440:intron	40.0%
	ACTTGAATACTCTAGGTGTC+AGG	+	chr5_3:54329515-54329534	None:intergenic	40.0%
!	ACCTAGAGTATTCAAGTCCT+GGG	-	chr5_3:54329518-54329537	Msa0818440:intron	40.0%
	CACACAATCACTCTTTGGAT+TGG	+	chr5_3:54329722-54329741	None:intergenic	40.0%
	GATTGTGTGATTCACAACAC+GGG	-	chr5_3:54329733-54329752	Msa0818440:CDS	40.0%
!!	CAGCTTTGAGAAGCATGGTT+AGG	+	chr5_3:54325796-54325815	None:intergenic	45.0%
!!	TACAGCAGCTTTGAGAAGCA+TGG	+	chr5_3:54325801-54325820	None:intergenic	45.0%
!	CGGAATCAAACGCGTGTTTT+CGG	+	chr5_3:54325849-54325868	None:intergenic	45.0%
	TTGATTCCGTTGCTTCAACG+TGG	-	chr5_3:54325860-54325879	Msa0818440:three_prime_UTR	45.0%
	TCGTAGCAGAAACAGCGATT+CGG	+	chr5_3:54325898-54325917	None:intergenic	45.0%
!!	ATCGCTGTTTCTGCTACGAA+AGG	-	chr5_3:54325899-54325918	Msa0818440:three_prime_UTR	45.0%
!!	GTTGTTGGTGTTGAACAGTG+TGG	-	chr5_3:54326174-54326193	Msa0818440:three_prime_UTR	45.0%
	AGGGCATGCTGAGAAATTGA+TGG	-	chr5_3:54326425-54326444	Msa0818440:three_prime_UTR	45.0%
	TGTATGTGTCCGTGCTTCAT+GGG	+	chr5_3:54326540-54326559	None:intergenic	45.0%
	ATGAAGCACGGACACATACA+CGG	-	chr5_3:54326540-54326559	Msa0818440:three_prime_UTR	45.0%
	ACGTCGTAAACTCTGACACT+TGG	-	chr5_3:54326613-54326632	Msa0818440:three_prime_UTR	45.0%
	GGTTATTGGGCTTGTGCTAT+TGG	+	chr5_3:54326808-54326827	None:intergenic	45.0%
	GCATGATCAAACTCAGAGAG+CGG	+	chr5_3:54327134-54327153	None:intergenic	45.0%
	CTATAAAACGGGTGGCACTT+TGG	+	chr5_3:54327822-54327841	None:intergenic	45.0%
!	CGTGATTCCCTGTTTGGAAT+TGG	-	chr5_3:54327929-54327948	Msa0818440:intron	45.0%
	CCTGGTATCCAATTCCAAAC+AGG	+	chr5_3:54327940-54327959	None:intergenic	45.0%
!	CCTGTTTGGAATTGGATACC+AGG	-	chr5_3:54327937-54327956	Msa0818440:intron	45.0%
	ATTCACATCACCGGTCTTTG+AGG	+	chr5_3:54328436-54328455	None:intergenic	45.0%
	GTCTGCCAAATTCACATCAC+CGG	+	chr5_3:54328445-54328464	None:intergenic	45.0%
!!!	AAGCGAGTTTTTGGGTGAAC+AGG	-	chr5_3:54328473-54328492	Msa0818440:CDS	45.0%
	GTTGCTCAGCTAAGAAGAGT+TGG	-	chr5_3:54328657-54328676	Msa0818440:intron	45.0%
	CAGCTAAGAAGAGTTGGCAA+AGG	-	chr5_3:54328663-54328682	Msa0818440:intron	45.0%
	AGAAGAGTTGGCAAAGGACA+TGG	-	chr5_3:54328669-54328688	Msa0818440:intron	45.0%
	TGCTCTTCATGCTACGAAAG+AGG	-	chr5_3:54329488-54329507	Msa0818440:intron	45.0%
!	CACCTAGAGTATTCAAGTCC+TGG	-	chr5_3:54329517-54329536	Msa0818440:intron	45.0%
	ACCCAGGACTTGAATACTCT+AGG	+	chr5_3:54329522-54329541	None:intergenic	45.0%
	TGCGACCACATTCCACAAAT+AGG	-	chr5_3:54329548-54329567	Msa0818440:CDS	45.0%
!!!	TTGATTTATTTAATTAATTT+TGG	-	chr5_3:54326133-54326152	Msa0818440:three_prime_UTR	5.0%
	GTGTATGTGTCCGTGCTTCA+TGG	+	chr5_3:54326541-54326560	None:intergenic	50.0%
!	GTGCAAAGCGTCACCCTTAT+CGG	+	chr5_3:54327156-54327175	None:intergenic	50.0%
	GATAAGGGTGACGCTTTGCA+CGG	-	chr5_3:54327155-54327174	Msa0818440:CDS	50.0%
	GTTGTGTGGCCCAGATACAA+TGG	-	chr5_3:54327747-54327766	Msa0818440:intron	50.0%
	AATGTGTGGCCCAGATGCAA+TGG	-	chr5_3:54327777-54327796	Msa0818440:intron	50.0%
	CACAATTAAGGGATGGTGCC+TGG	+	chr5_3:54327958-54327977	None:intergenic	50.0%
!!!	TAAGGCGTGGTTTTAAGGCG+TGG	+	chr5_3:54328948-54328967	None:intergenic	50.0%
	GATGGGACATGCGTCATACA+AGG	-	chr5_3:54329883-54329902	Msa0818440:five_prime_UTR	50.0%
!	GTCACCGTGCCATTGCATCT+GGG	+	chr5_3:54327789-54327808	None:intergenic	55.0%
!	TGTCACCGTGCCATTGCATC+TGG	+	chr5_3:54327790-54327809	None:intergenic	55.0%
	CCACAGGTTGCCTCAAAGAC+CGG	-	chr5_3:54328423-54328442	Msa0818440:intron	55.0%
	TGTGGTCGCATGTGAAACCC+AGG	+	chr5_3:54329538-54329557	None:intergenic	55.0%
	GTGGCCCAGATGCAATGGCA+CGG	-	chr5_3:54327782-54327801	Msa0818440:intron	60.0%
!!	CCGGTCTTTGAGGCAACCTG+TGG	+	chr5_3:54328426-54328445	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	54325689	54329920	54325689	ID=Msa0818440;Name=Msa0818440
chr5_3	mRNA	54325689	54329920	54325689	ID=Msa0818440-mRNA-1;Parent=Msa0818440;Name=Msa0818440-mRNA-1;_AED=0.09;_eAED=0.09;_QI=111\|1\|1\|1\|0.87\|0.77\|9\|1032\|249
chr5_3	exon	54325689	54325766	54325689	ID=Msa0818440-mRNA-1:exon:16459;Parent=Msa0818440-mRNA-1
chr5_3	exon	54325802	54326805	54325802	ID=Msa0818440-mRNA-1:exon:16458;Parent=Msa0818440-mRNA-1
chr5_3	exon	54326919	54326982	54326919	ID=Msa0818440-mRNA-1:exon:16457;Parent=Msa0818440-mRNA-1
chr5_3	exon	54327115	54327180	54327115	ID=Msa0818440-mRNA-1:exon:16456;Parent=Msa0818440-mRNA-1
chr5_3	exon	54327307	54327368	54327307	ID=Msa0818440-mRNA-1:exon:16455;Parent=Msa0818440-mRNA-1
chr5_3	exon	54328433	54328520	54328433	ID=Msa0818440-mRNA-1:exon:16454;Parent=Msa0818440-mRNA-1
chr5_3	exon	54329154	54329214	54329154	ID=Msa0818440-mRNA-1:exon:16453;Parent=Msa0818440-mRNA-1
chr5_3	exon	54329334	54329417	54329334	ID=Msa0818440-mRNA-1:exon:16452;Parent=Msa0818440-mRNA-1
chr5_3	exon	54329535	54329920	54329535	ID=Msa0818440-mRNA-1:exon:16451;Parent=Msa0818440-mRNA-1
chr5_3	five_prime_UTR	54329810	54329920	54329810	ID=Msa0818440-mRNA-1:five_prime_utr;Parent=Msa0818440-mRNA-1
chr5_3	CDS	54329535	54329809	54329535	ID=Msa0818440-mRNA-1:cds;Parent=Msa0818440-mRNA-1
chr5_3	CDS	54329334	54329417	54329334	ID=Msa0818440-mRNA-1:cds;Parent=Msa0818440-mRNA-1
chr5_3	CDS	54329154	54329214	54329154	ID=Msa0818440-mRNA-1:cds;Parent=Msa0818440-mRNA-1
chr5_3	CDS	54328433	54328520	54328433	ID=Msa0818440-mRNA-1:cds;Parent=Msa0818440-mRNA-1
chr5_3	CDS	54327307	54327368	54327307	ID=Msa0818440-mRNA-1:cds;Parent=Msa0818440-mRNA-1
chr5_3	CDS	54327115	54327180	54327115	ID=Msa0818440-mRNA-1:cds;Parent=Msa0818440-mRNA-1
chr5_3	CDS	54326919	54326982	54326919	ID=Msa0818440-mRNA-1:cds;Parent=Msa0818440-mRNA-1
chr5_3	CDS	54326756	54326805	54326756	ID=Msa0818440-mRNA-1:cds;Parent=Msa0818440-mRNA-1
chr5_3	three_prime_UTR	54325802	54326755	54325802	ID=Msa0818440-mRNA-1:three_prime_utr;Parent=Msa0818440-mRNA-1
chr5_3	three_prime_UTR	54325689	54325766	54325689	ID=Msa0818440-mRNA-1:three_prime_utr;Parent=Msa0818440-mRNA-1

Gene Sequence

>Msa0818440

ATGCTTCTCAAAGCTGCTGTAAACGCTAACGCTTCTCTTTTCAATTCCGAAAACACGCGTTTGATTCCGTTGCTTCAACGTGGAAGTAAATTGGACCGAATCGCTGTTTCTGCTACGAAAGGTTCGAACAATAACCGTGTTTTAACCGGTGTTTTGTTTGAACCTTTTGAAGAGGTTAAAAAGGAACTTGATCTTGTTCCTATTGTTCCTCAAGATTCTTTAGCTCGTCATAAATTTCATGTTGATTCTGAATCTGCCATTAATGAACAAATCAATGTGGAGTATAATGTTTCGTATGTTTATCATGCGATGTATGCGTATTTCGATAGAGATAATGTTGCGCTGAAAGGTCTTGCTAAGTTTTTTAAGGAATCTAGTGAAGAGGAAAGAGGGCATGCTGAGAAATTGATGGAATATCAGAACAAAAGGGGTGGAAAAGTGAAGTTGCAGTCTATAGTGATGCCGCTCTCTGAGTTTGATCATGCCGATAAGGGTGACGCTTTGCACGCAATGGAACTTGCATTGTCCTTGGAGAAGCTAACAAATGAGAAACTCCTTAACCTGCACAATGTTGCCTCAAAGACCGGTGATGTGAATTTGGCAGACTTTGTGGAAAGCGAGTTTTTGGGTGAACAGGTGGAAGCCATCAAAAAAATATCCGAGTATGTTGCTCAGCTAAGAAGAGTTGGCAAAGGACATGGTGTCTGGCACTTTGATCAGATGTTGCTCAACGAAGCAGCTGCAGCTTGA

Protein sequence

>Msa0818440

MLLKAAVNANASLFNSENTRLIPLLQRGSKLDRIAVSATKGSNNNRVLTGVLFEPFEEVKKELDLVPIVPQDSLARHKFHVDSESAINEQINVEYNVSYVYHAMYAYFDRDNVALKGLAKFFKESSEEERGHAEKLMEYQNKRGGKVKLQSIVMPLSEFDHADKGDALHAMELALSLEKLTNEKLLNLHNVASKTGDVNLADFVESEFLGEQVEAIKKISEYVAQLRRVGKGHGVWHFDQMLLNEAAAA*