AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0858910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858910 MtrunA17_Chr5g0437531 89.960 249 2 1 1 226 1 249 1.45e-160 444
Msa0858910 MtrunA17_Chr7g0243241 65.672 201 46 1 48 225 55 255 3.60e-87 258
Msa0858910 MtrunA17_Chr4g0005581 67.005 197 42 1 48 221 54 250 4.30e-86 255
Msa0858910 MtrunA17_Chr5g0431291 71.845 103 29 0 124 226 34 136 8.58e-50 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858910 AT3G11050.1 65.323 248 52 5 2 222 11 251 4.55e-105 304
Msa0858910 AT2G40300.1 69.048 210 41 2 34 220 49 257 3.65e-97 284
Msa0858910 AT3G56090.1 69.697 198 37 1 50 224 62 259 2.30e-92 272
Msa0858910 AT5G01600.1 57.430 249 67 3 12 221 7 255 5.93e-92 270
Msa0858910 AT3G61010.2 52.500 80 17 2 91 170 271 329 7.97e-13 67.0

Find 81 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTTGATTTGTTCATTAA+TGG 0.196228 5_4:+56765709 None:intergenic
TTATAATTTCATTCGGAAAT+AGG 0.202232 5_4:+56760131 None:intergenic
CACTTTGTTGTTCCTATTTG+TGG 0.221063 5_4:+56759997 None:intergenic
GCTTCAACGTGGAAGTAAAT+TGG 0.267790 5_4:-56765894 Msa0858910:CDS
AACCCACATAAACTTTATTA+AGG 0.271238 5_4:+56760597 None:intergenic
AAAGACCGGTGATGTGAATT+TGG 0.292838 5_4:-56761123 Msa0858910:CDS
ATTGAGACTACTTGATCTAA+TGG 0.328186 5_4:+56760232 None:intergenic
TGAATCACACAATCACTCTT+TGG 0.332003 5_4:+56759770 None:intergenic
TTGATGTAATTTCAGGTGTC+TGG 0.348601 5_4:-56760771 Msa0858910:intron
GTGCAAAGCGTCACCCTTAT+CGG 0.353274 5_4:+56762245 None:intergenic
ATCAAGTAGTCTCAATATTA+TGG 0.353507 5_4:-56760225 Msa0858910:three_prime_UTR
ATTTCCGAATGAAATTATAA+AGG 0.362733 5_4:-56760128 Msa0858910:three_prime_UTR
CAGCTTTGAGAAGCATGGTT+AGG 0.367473 5_4:+56765972 None:intergenic
TAAGGGCACTATTGTACATT+GGG 0.372407 5_4:-56760309 Msa0858910:three_prime_UTR
GTCTTACATTGTGCAGGTTA+AGG 0.377061 5_4:+56761271 None:intergenic
AAAGAATCTTGAGGAACAAT+AGG 0.383929 5_4:+56765767 None:intergenic
ACCCAGGACTTGAATACTTT+AGG 0.401301 5_4:+56760038 None:intergenic
CAATTCCGAAAACACGCGTT+TGG 0.407885 5_4:-56765924 Msa0858910:CDS
TGCGACCACATTCCACAAAT+AGG 0.413508 5_4:-56760009 Msa0858910:three_prime_UTR
TGTGAATTTGGCAGACTTTG+TGG 0.418668 5_4:-56761111 Msa0858910:CDS
TATTGTACATTGGGGAGCTT+AGG 0.430057 5_4:-56760300 Msa0858910:three_prime_UTR
CTTTCCTTTATAATTTCATT+CGG 0.430633 5_4:+56760124 None:intergenic
TGAGTTTGATCATGCCGATA+AGG 0.436295 5_4:-56762259 Msa0858910:CDS
ACGCCTTAATAAAGTTTATG+TGG 0.441352 5_4:-56760600 Msa0858910:three_prime_UTR
TGAAACTGAAAATGTTGGAT+TGG 0.448969 5_4:+56766058 None:intergenic
CACCTAAAGTATTCAAGTCC+TGG 0.450327 5_4:-56760040 Msa0858910:three_prime_UTR
ACTTGAATACTTTAGGTGTC+AGG 0.452139 5_4:+56760045 None:intergenic
AGCTTTGAGAAGCATGGTTA+GGG 0.455565 5_4:+56765973 None:intergenic
GAGTTTGATCATGCCGATAA+GGG 0.461004 5_4:-56762258 Msa0858910:CDS
TTCTTAGATTCACTAGTGCT+TGG 0.461164 5_4:+56760473 None:intergenic
GGAAAATAAATAAAATTCAG+AGG 0.468704 5_4:+56766025 None:intergenic
TAAATTACTTTCAAGTCGGA+TGG 0.478912 5_4:-56759664 Msa0858910:three_prime_UTR
TACTCTTCATGCTATGAAAG+AGG 0.482776 5_4:-56760069 Msa0858910:three_prime_UTR
TTCCAGGTTGCCTCAAAGAC+CGG 0.484582 5_4:-56761137 Msa0858910:intron
GAAAATGAAACTGAAAATGT+TGG 0.485468 5_4:+56766053 None:intergenic
ATTCACATCACCGGTCTTTG+AGG 0.489139 5_4:+56761127 None:intergenic
AATTTCATTCGGAAATAGGT+TGG 0.491759 5_4:+56760135 None:intergenic
CACACAATCACTCTTTGGAT+TGG 0.492644 5_4:+56759775 None:intergenic
ATGTAAGAGAAGATTGAAGT+TGG 0.497855 5_4:-56759688 Msa0858910:three_prime_UTR
ACAGATACAAATGACTAAAG+TGG 0.498850 5_4:+56760690 None:intergenic
CAGAACGAAAATGGAGAGAA+AGG 0.499257 5_4:+56766004 None:intergenic
GAAACTGAAAATGTTGGATT+GGG 0.501120 5_4:+56766059 None:intergenic
ACCTAAAGTATTCAAGTCCT+GGG 0.503240 5_4:-56760039 Msa0858910:three_prime_UTR
AATGGAACTTGCATTGTCCT+TGG 0.503326 5_4:-56761316 Msa0858910:CDS
CGCCTTAATAAAGTTTATGT+GGG 0.510516 5_4:-56760599 Msa0858910:three_prime_UTR
TTTACTTAGTAGTTGATCCA+TGG 0.513824 5_4:-56760549 Msa0858910:three_prime_UTR
CAGATACAAATGACTAAAGT+GGG 0.526697 5_4:+56760691 None:intergenic
AAACATGTCTTACATTGTGC+AGG 0.531800 5_4:+56761265 None:intergenic
TATTGACTAGAACTAGTAGT+TGG 0.533563 5_4:-56760645 Msa0858910:three_prime_UTR
TACAGCAGCTTTGAGAAGCA+TGG 0.535205 5_4:+56765967 None:intergenic
CTCATTTGTTAGCTTCTCCA+AGG 0.537044 5_4:+56761299 None:intergenic
TCGTAGCAGAAACAGCGATT+CGG 0.538135 5_4:+56765870 None:intergenic
GTCTGCCAAATTCACATCAC+CGG 0.543362 5_4:+56761118 None:intergenic
TTACTTCCACGTTGAAGCAA+CGG 0.548255 5_4:+56765899 None:intergenic
ATAAGGGCACTATTGTACAT+TGG 0.554626 5_4:-56760310 Msa0858910:three_prime_UTR
AGAGATAATGTTGCACTGAA+AGG 0.556397 5_4:-56765524 Msa0858910:CDS
AAATTACTTTCAAGTCGGAT+GGG 0.556558 5_4:-56759663 Msa0858910:three_prime_UTR
TGGTTAAATTACTTTCAAGT+CGG 0.559722 5_4:-56759668 Msa0858910:three_prime_UTR
ATCGCTGTTTCTGCTACGAA+AGG 0.563174 5_4:-56765866 Msa0858910:CDS
GTTGCTCAGCTAAGAAGAGT+TGG 0.565145 5_4:-56760903 Msa0858910:CDS
AGAAGAGTTGGCAAAGGACA+TGG 0.569821 5_4:-56760891 Msa0858910:intron
GAAAATAAATAAAATTCAGA+GGG 0.570255 5_4:+56766026 None:intergenic
AAGAGAATGTGAGGATTCTA+CGG 0.571781 5_4:+56760193 None:intergenic
TTGTTCCTATTTGTGGAATG+TGG 0.575799 5_4:+56760004 None:intergenic
GATAAGGGTGACGCTTTGCA+CGG 0.580509 5_4:-56762243 Msa0858910:intron
ATAAAGGAAAGATAGAAACT+TGG 0.584379 5_4:-56760112 Msa0858910:three_prime_UTR
ACTTAGTAGTTGATCCATGG+TGG 0.592027 5_4:-56760546 Msa0858910:three_prime_UTR
GATGGGACATGCGTCATACA+CGG 0.599144 5_4:-56759646 Msa0858910:three_prime_UTR
TGACGAGCTAAAGAATCTTG+AGG 0.605682 5_4:+56765758 None:intergenic
AGATAACGAAAGAGAATGTG+AGG 0.617923 5_4:+56760184 None:intergenic
TCTTAGCTGAGCAACATACT+CGG 0.619174 5_4:+56760911 None:intergenic
ACATAAACTTTATTAAGGCG+TGG 0.619896 5_4:+56760602 None:intergenic
ACAAAACACCGGTTAAAACA+CGG 0.624694 5_4:+56765831 None:intergenic
TGTGGTCGCATGTGAAACCC+AGG 0.633519 5_4:+56760022 None:intergenic
AAAAGGTTCAAACAAAACAC+CGG 0.645626 5_4:+56765820 None:intergenic
CAGCTAAGAAGAGTTGGCAA+AGG 0.650592 5_4:-56760897 Msa0858910:CDS
TGATTGTGTGATTCACAACA+CGG 0.652671 5_4:-56759762 Msa0858910:three_prime_UTR
GCATGATCAAACTCAGAGAG+CGG 0.671716 5_4:+56762267 None:intergenic
TTGGTTCCGTTGCTTCAACG+TGG 0.674229 5_4:-56765905 Msa0858910:CDS
GATTGTGTGATTCACAACAC+GGG 0.675307 5_4:-56759761 Msa0858910:three_prime_UTR
AAGGGCACTATTGTACATTG+GGG 0.691661 5_4:-56760308 Msa0858910:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTAATTTATTTTGTTT+TGG - chr5_4:56760236-56760255 Msa0858910:three_prime_UTR 10.0%
!! ATAATAAAAAAATGAGAAAA+AGG + chr5_4:56760702-56760721 None:intergenic 10.0%
!!! TTATTTTTTTTGTAACAATT+TGG + chr5_4:56761467-56761486 None:intergenic 10.0%
!! TTACAAAAAAAATAAGATAA+AGG - chr5_4:56761472-56761491 Msa0858910:intron 10.0%
!! CTTTATAATTTAAATATCAA+TGG + chr5_4:56762367-56762386 None:intergenic 10.0%
!!! ATGAATTTATTTTTCTTAAA+TGG - chr5_4:56762389-56762408 Msa0858910:intron 10.0%
!!! AATTTGACTATTTTTTAAAT+CGG - chr5_4:56762825-56762844 Msa0858910:intron 10.0%
!! ATTTACTTTACAAAATATTT+CGG + chr5_4:56764180-56764199 None:intergenic 10.0%
!!! AAATTTTTGAATTGTTAATA+AGG - chr5_4:56765390-56765409 Msa0858910:intron 10.0%
!!! AATTTTTGAATTGTTAATAA+GGG - chr5_4:56765391-56765410 Msa0858910:intron 10.0%
!! GAAAATAAATAAAATTCAGA+GGG + chr5_4:56759694-56759713 None:intergenic 15.0%
!!! TTTTGTTTTGGTTTTAATTT+TGG - chr5_4:56760248-56760267 Msa0858910:three_prime_UTR 15.0%
!!! TTTTGTTTATAGGTTTTTTA+AGG - chr5_4:56760332-56760351 Msa0858910:three_prime_UTR 15.0%
!!! AATGTATATTACATTTTGAT+TGG + chr5_4:56760481-56760500 None:intergenic 15.0%
!! AATCAAAATGTAATATACAT+TGG - chr5_4:56760480-56760499 Msa0858910:three_prime_UTR 15.0%
!! GTTACAAATAAATAAGATAA+AGG + chr5_4:56760612-56760631 None:intergenic 15.0%
!! ACGAAAAAAAATAAAGATAA+AGG + chr5_4:56760643-56760662 None:intergenic 15.0%
!!! ATCTTTATTTTTTTTCGTTT+AGG - chr5_4:56760645-56760664 Msa0858910:three_prime_UTR 15.0%
!!! ATTTTTGATTTGATTTTTCT+TGG - chr5_4:56761683-56761702 Msa0858910:intron 15.0%
!!! AATTTATTTTTCTTAAATGG+TGG - chr5_4:56762392-56762411 Msa0858910:intron 15.0%
!! AGTACATATTTAATTATTAG+AGG - chr5_4:56762472-56762491 Msa0858910:intron 15.0%
!!! AGTGTAGATTTTATTTTTAA+AGG - chr5_4:56762530-56762549 Msa0858910:intron 15.0%
!!! GTGTAGATTTTATTTTTAAA+GGG - chr5_4:56762531-56762550 Msa0858910:intron 15.0%
!! AAAAGTTAATCTTAATCATA+AGG + chr5_4:56762634-56762653 None:intergenic 15.0%
!! TAGTCAAATTTCATTAAATT+GGG + chr5_4:56762815-56762834 None:intergenic 15.0%
!! ATAGTCAAATTTCATTAAAT+TGG + chr5_4:56762816-56762835 None:intergenic 15.0%
!! TATATTACTCTAACAAAAAA+TGG - chr5_4:56763021-56763040 Msa0858910:intron 15.0%
!!! TGTTTTATTTTTAGAACAAA+AGG - chr5_4:56763394-56763413 Msa0858910:intron 15.0%
!!! GTTTTATTTTTAGAACAAAA+GGG - chr5_4:56763395-56763414 Msa0858910:intron 15.0%
!!! TTTTATTTTTAGAACAAAAG+GGG - chr5_4:56763396-56763415 Msa0858910:intron 15.0%
!!! ATCATTATTTTTCTATTCAT+AGG - chr5_4:56764762-56764781 Msa0858910:intron 15.0%
!! GGAAAATAAATAAAATTCAG+AGG + chr5_4:56759695-56759714 None:intergenic 20.0%
!!! GATTATGTTGTTTTGTTTAT+AGG - chr5_4:56760322-56760341 Msa0858910:three_prime_UTR 20.0%
!!! TATCAGGTTTTTTACTTTTA+CGG - chr5_4:56760399-56760418 Msa0858910:three_prime_UTR 20.0%
!! TATAGACAAGATTACATTAT+AGG - chr5_4:56760585-56760604 Msa0858910:three_prime_UTR 20.0%
!! CTTATTTATTTGTAACACTT+TGG - chr5_4:56760616-56760635 Msa0858910:three_prime_UTR 20.0%
!!! AACTAAATCTCTTTTCTATA+GGG + chr5_4:56760942-56760961 None:intergenic 20.0%
!!! AAACTAAATCTCTTTTCTAT+AGG + chr5_4:56760943-56760962 None:intergenic 20.0%
!! TAACATTAATTCACGATATT+TGG - chr5_4:56761222-56761241 Msa0858910:intron 20.0%
!!! ATCTTTATTTTTTCCTGTTT+AGG + chr5_4:56761438-56761457 None:intergenic 20.0%
!! TGAACACGTAAATATAATTA+AGG + chr5_4:56761516-56761535 None:intergenic 20.0%
!!! TTCTAATATGTTTGGAATAA+GGG + chr5_4:56761983-56762002 None:intergenic 20.0%
!!! TTTCTAATATGTTTGGAATA+AGG + chr5_4:56761984-56762003 None:intergenic 20.0%
!!! GAAATGTTTTCTAATATGTT+TGG + chr5_4:56761991-56762010 None:intergenic 20.0%
!! TTACTCAATACAGTAAAATA+TGG - chr5_4:56762276-56762295 Msa0858910:CDS 20.0%
!!! AGTGTATATTTTAACATAAG+AGG - chr5_4:56762559-56762578 Msa0858910:intron 20.0%
!!! GTGTATATTTTAACATAAGA+GGG - chr5_4:56762560-56762579 Msa0858910:intron 20.0%
!!! TATGCATATTACATTTTGAT+TGG - chr5_4:56762701-56762720 Msa0858910:intron 20.0%
!! AATTTATGACAAGTAAAAGT+AGG + chr5_4:56762783-56762802 None:intergenic 20.0%
!! TTTATTATATACCGTTGTTA+TGG + chr5_4:56763066-56763085 None:intergenic 20.0%
!! GGTATATAATAAATCACAAA+AGG - chr5_4:56763073-56763092 Msa0858910:intron 20.0%
!! AAGATAATTGATGAATTTGT+GGG - chr5_4:56763671-56763690 Msa0858910:intron 20.0%
!! CTAAAAATAAAACGGAAATA+TGG + chr5_4:56764683-56764702 None:intergenic 20.0%
!!! TCCGTTTTATTTTTAGTTTA+AGG - chr5_4:56764687-56764706 Msa0858910:intron 20.0%
!! CCCTTAAACTAAAAATAAAA+CGG + chr5_4:56764691-56764710 None:intergenic 20.0%
!!! CCGTTTTATTTTTAGTTTAA+GGG - chr5_4:56764688-56764707 Msa0858910:intron 20.0%
!!! ATTATTTTTCTATTCATAGG+TGG - chr5_4:56764765-56764784 Msa0858910:intron 20.0%
!!! TTTTAAAGTGTTAACTTATG+TGG - chr5_4:56764918-56764937 Msa0858910:intron 20.0%
!! TTATAATTTCATTCGGAAAT+AGG + chr5_4:56765589-56765608 None:intergenic 20.0%
!! ATTTCCGAATGAAATTATAA+AGG - chr5_4:56765589-56765608 Msa0858910:intron 20.0%
!! CTTTCCTTTATAATTTCATT+CGG + chr5_4:56765596-56765615 None:intergenic 20.0%
! GAAAATGAAACTGAAAATGT+TGG + chr5_4:56759667-56759686 None:intergenic 25.0%
!!! GAACTTGATTTGTTCATTAA+TGG + chr5_4:56760011-56760030 None:intergenic 25.0%
!!! TTTTGGATTTTTGTTGTTGT+TGG - chr5_4:56760102-56760121 Msa0858910:three_prime_UTR 25.0%
! GAACATATTCATCATATTTC+TGG + chr5_4:56760784-56760803 None:intergenic 25.0%
! TGTGTTTAAAAGAAGATTTC+AGG + chr5_4:56760909-56760928 None:intergenic 25.0%
! TACAAAAGTTAAGATTGTTC+TGG + chr5_4:56761097-56761116 None:intergenic 25.0%
! TTAATTTCACAAATGTTGCA+AGG + chr5_4:56761161-56761180 None:intergenic 25.0%
! TTGCAACATTTGTGAAATTA+AGG - chr5_4:56761160-56761179 Msa0858910:intron 25.0%
! TGTGTTTAAAAGAAGATTTG+AGG - chr5_4:56761193-56761212 Msa0858910:intron 25.0%
!! GAACATCTTCATCATATTTT+TGG - chr5_4:56761317-56761336 Msa0858910:CDS 25.0%
! ATTAAGGCAAGATTACATTA+GGG + chr5_4:56761500-56761519 None:intergenic 25.0%
! AATTAAGGCAAGATTACATT+AGG + chr5_4:56761501-56761520 None:intergenic 25.0%
! ATTAATTTACACTACAAGAC+TGG - chr5_4:56761542-56761561 Msa0858910:intron 25.0%
! AAGTCATCTGTTATACTTTA+AGG - chr5_4:56761736-56761755 Msa0858910:intron 25.0%
! AATTAATTACACTACAAGAC+TGG + chr5_4:56761861-56761880 None:intergenic 25.0%
! GTAATTCAAGAATCTTTAAG+AGG + chr5_4:56761935-56761954 None:intergenic 25.0%
!! TCTAATATGTTTGGAATAAG+GGG + chr5_4:56761982-56762001 None:intergenic 25.0%
!!! ATTTTAACATAAGAAGAGAG+AGG + chr5_4:56762048-56762067 None:intergenic 25.0%
!!! GCACTTAAAAAAAAGTATTG+CGG - chr5_4:56762127-56762146 Msa0858910:intron 25.0%
!!! CACTTAAAAAAAAGTATTGC+GGG - chr5_4:56762128-56762147 Msa0858910:intron 25.0%
! TTGTAATTCAAGCATCTTAT+AGG - chr5_4:56762501-56762520 Msa0858910:intron 25.0%
! TGTAATTCAAGCATCTTATA+GGG - chr5_4:56762502-56762521 Msa0858910:intron 25.0%
!!! TATATTTTAACATAAGAGGG+AGG - chr5_4:56762563-56762582 Msa0858910:intron 25.0%
!!! ATATTTTAACATAAGAGGGA+GGG - chr5_4:56762564-56762583 Msa0858910:intron 25.0%
! TCAATAGAATACCATAACAA+CGG - chr5_4:56763052-56763071 Msa0858910:intron 25.0%
! TACTAACTTAGAAACATAAG+TGG - chr5_4:56763100-56763119 Msa0858910:intron 25.0%
! GTGTTAGATAATAGGTTATT+GGG + chr5_4:56763140-56763159 None:intergenic 25.0%
! AGTGTTAGATAATAGGTTAT+TGG + chr5_4:56763141-56763160 None:intergenic 25.0%
!!! ACTTATTTTTGTTGCCTTAT+TGG - chr5_4:56763334-56763353 Msa0858910:intron 25.0%
! TAGATCATTTGTTCTGTAAT+TGG - chr5_4:56763516-56763535 Msa0858910:intron 25.0%
! GAAGATAATTGATGAATTTG+TGG - chr5_4:56763670-56763689 Msa0858910:intron 25.0%
! TTGTCGAAACTATAAAACTA+AGG + chr5_4:56763990-56764009 None:intergenic 25.0%
! TGGGTATATCATAATTGTAT+TGG + chr5_4:56764029-56764048 None:intergenic 25.0%
! TACAATTATGATATACCCAA+AGG - chr5_4:56764030-56764049 Msa0858910:intron 25.0%
! CTTAATGATTACAAGAAACA+TGG + chr5_4:56764141-56764160 None:intergenic 25.0%
!! CATAAATGTAATCTGAAATC+TGG + chr5_4:56764208-56764227 None:intergenic 25.0%
! TACAAAACTAGTAATTAGAG+GGG + chr5_4:56764241-56764260 None:intergenic 25.0%
! CTACAAAACTAGTAATTAGA+GGG + chr5_4:56764242-56764261 None:intergenic 25.0%
! TCTACAAAACTAGTAATTAG+AGG + chr5_4:56764243-56764262 None:intergenic 25.0%
!!! ATACTCGGATATTTTTTTGA+TGG + chr5_4:56764794-56764813 None:intergenic 25.0%
! AGTTAGAAAAATAATGTGCA+TGG + chr5_4:56764872-56764891 None:intergenic 25.0%
! AACCCACATAAACTTTATTA+AGG + chr5_4:56765123-56765142 None:intergenic 25.0%
! AGTAAACTGAAAAATAGCAA+TGG + chr5_4:56765154-56765173 None:intergenic 25.0%
!!! GCTACTTTTAAGTAATTTTG+TGG - chr5_4:56765362-56765381 Msa0858910:intron 25.0%
! ATCAAGTAGTCTCAATATTA+TGG - chr5_4:56765492-56765511 Msa0858910:intron 25.0%
! ATAAAGGAAAGATAGAAACT+TGG - chr5_4:56765605-56765624 Msa0858910:intron 25.0%
!! CTTGGTCTAATAAAATTTTC+TGG - chr5_4:56765623-56765642 Msa0858910:intron 25.0%
! ACGATTAAAGTAGTTAATGT+GGG + chr5_4:56765784-56765803 None:intergenic 25.0%
! AACGATTAAAGTAGTTAATG+TGG + chr5_4:56765785-56765804 None:intergenic 25.0%
! ACTAAAAAGATACAGAACTT+AGG - chr5_4:56765814-56765833 Msa0858910:CDS 25.0%
!!! TTCTCATTTTAAGAAGACAA+TGG - chr5_4:56765861-56765880 Msa0858910:CDS 25.0%
!! ATTGTAGCTTTTACATAAAC+AGG + chr5_4:56765908-56765927 None:intergenic 25.0%
!! TGGTTAAATTACTTTCAAGT+CGG - chr5_4:56766049-56766068 Msa0858910:five_prime_UTR 25.0%
GAAACTGAAAATGTTGGATT+GGG + chr5_4:56759661-56759680 None:intergenic 30.0%
TGAAACTGAAAATGTTGGAT+TGG + chr5_4:56759662-56759681 None:intergenic 30.0%
!!! AACAATAACCGTGTTTTAAC+CGG - chr5_4:56759878-56759897 Msa0858910:three_prime_UTR 30.0%
AAAAGGTTCAAACAAAACAC+CGG + chr5_4:56759900-56759919 None:intergenic 30.0%
!! TTTGTTTGAACCTTTTGAAG+AGG - chr5_4:56759904-56759923 Msa0858910:intron 30.0%
!! ACCTTTTGAAGAGGTTAAAA+AGG - chr5_4:56759913-56759932 Msa0858910:intron 30.0%
! TCCTTTTTAACCTCTTCAAA+AGG + chr5_4:56759917-56759936 None:intergenic 30.0%
AAAGAATCTTGAGGAACAAT+AGG + chr5_4:56759953-56759972 None:intergenic 30.0%
!!! ATTTTTGTTGTTGTTGGTGT+TGG - chr5_4:56760108-56760127 Msa0858910:three_prime_UTR 30.0%
!! TTTTAAGGAATCTAGTGAAG+AGG - chr5_4:56760347-56760366 Msa0858910:three_prime_UTR 30.0%
TGAGAAATTGATGGAATATC+AGG - chr5_4:56760383-56760402 Msa0858910:three_prime_UTR 30.0%
! TTGATTGGTTGATATCATGA+GGG + chr5_4:56762716-56762735 None:intergenic 30.0%
! TTTGATTGGTTGATATCATG+AGG + chr5_4:56762715-56762734 None:intergenic 30.0%
GAAGATTCAAAGAAAGAAGA+TGG + chr5_4:56760814-56760833 None:intergenic 30.0%
CTACACAAATATATCTCCAA+AGG - chr5_4:56760861-56760880 Msa0858910:intron 30.0%
TAACATTAATTCACCACCTT+TGG + chr5_4:56760880-56760899 None:intergenic 30.0%
TCTAACTCAATATTCAAACC+CGG - chr5_4:56761018-56761037 Msa0858910:intron 30.0%
!!! TTTTGGGGTTATTTTTATGC+CGG + chr5_4:56761040-56761059 None:intergenic 30.0%
! CAAAGTTGCTATCAATTTTG+GGG + chr5_4:56761055-56761074 None:intergenic 30.0%
! GCAAAGTTGCTATCAATTTT+GGG + chr5_4:56761056-56761075 None:intergenic 30.0%
! TGCAAAGTTGCTATCAATTT+TGG + chr5_4:56761057-56761076 None:intergenic 30.0%
AGAAGATGATGAAGATTCAA+AGG - chr5_4:56761277-56761296 Msa0858910:intron 30.0%
!! TGTGCTTTTAAGAGAGATAA+AGG - chr5_4:56761411-56761430 Msa0858910:intron 30.0%
TTAAGGCAAGATTACATTAG+GGG + chr5_4:56761499-56761518 None:intergenic 30.0%
!! TTTGATTTTTCTTGGTTGTG+AGG - chr5_4:56761691-56761710 Msa0858910:intron 30.0%
! CTAATATGTTTGGAATAAGG+GGG + chr5_4:56761981-56762000 None:intergenic 30.0%
GTAATTCAAGCTTCTCTTAA+GGG + chr5_4:56762022-56762041 None:intergenic 30.0%
TGTAATTCAAGCTTCTCTTA+AGG + chr5_4:56762023-56762042 None:intergenic 30.0%
TAATTAATGCCTATGAAGCA+CGG - chr5_4:56762848-56762867 Msa0858910:intron 30.0%
TTGACACCAATAGTAATCTA+AGG - chr5_4:56762908-56762927 Msa0858910:intron 30.0%
ACGTTTCCTTAGATTACTAT+TGG + chr5_4:56762917-56762936 None:intergenic 30.0%
!! CCTTTGAAGTGTTAGATAAT+AGG + chr5_4:56763148-56763167 None:intergenic 30.0%
CCTATTATCTAACACTTCAA+AGG - chr5_4:56763145-56763164 Msa0858910:intron 30.0%
! TGTTAATCAACTGTTAGCTT+TGG - chr5_4:56763188-56763207 Msa0858910:intron 30.0%
CTTTGGTTACTAGATCAATA+AGG - chr5_4:56763205-56763224 Msa0858910:intron 30.0%
AAATTCGACGACTTTCTAAT+CGG + chr5_4:56763271-56763290 None:intergenic 30.0%
TCACAAGATAACTACCAATA+AGG + chr5_4:56763351-56763370 None:intergenic 30.0%
!!! TATTTTTAGAACAAAAGGGG+TGG - chr5_4:56763399-56763418 Msa0858910:intron 30.0%
TCACAATTCAGACTCAATTA+AGG + chr5_4:56763577-56763596 None:intergenic 30.0%
GATTGAACTGAATCAAAAAG+TGG - chr5_4:56763762-56763781 Msa0858910:intron 30.0%
ATTATGATATACCCAAAGGA+AGG - chr5_4:56764034-56764053 Msa0858910:intron 30.0%
TTATGATATACCCAAAGGAA+GGG - chr5_4:56764035-56764054 Msa0858910:intron 30.0%
ATGATAAATTCCCTTCCTTT+GGG + chr5_4:56764048-56764067 None:intergenic 30.0%
AATGATAAATTCCCTTCCTT+TGG + chr5_4:56764049-56764068 None:intergenic 30.0%
GGAAGGGAATTTATCATTTA+TGG - chr5_4:56764051-56764070 Msa0858910:intron 30.0%
AGAAACATGGTCACAATTAA+GGG + chr5_4:56764128-56764147 None:intergenic 30.0%
AAGAAACATGGTCACAATTA+AGG + chr5_4:56764129-56764148 None:intergenic 30.0%
! AATCATTAAGATGTTTTCCC+TGG - chr5_4:56764151-56764170 Msa0858910:intron 30.0%
ACAAAACTAGTAATTAGAGG+GGG + chr5_4:56764240-56764259 None:intergenic 30.0%
TCTTATCTTTATTGCAGCAA+TGG - chr5_4:56764383-56764402 Msa0858910:intron 30.0%
!! AAGACATGTTTGTTGAGTTT+TGG - chr5_4:56764464-56764483 Msa0858910:intron 30.0%
CATACGTAAAGTTAAGAGAA+AGG + chr5_4:56764557-56764576 None:intergenic 30.0%
! AACTTTACGTATGTTTTTCC+AGG - chr5_4:56764564-56764583 Msa0858910:intron 30.0%
!! GTTAACACTTTAAAATGCAG+AGG + chr5_4:56764913-56764932 None:intergenic 30.0%
CAGATACAAATGACTAAAGT+GGG + chr5_4:56765029-56765048 None:intergenic 30.0%
ACAGATACAAATGACTAAAG+TGG + chr5_4:56765030-56765049 None:intergenic 30.0%
! TATTGACTAGAACTAGTAGT+TGG - chr5_4:56765072-56765091 Msa0858910:intron 30.0%
!! TTTATTAAGGCGTGGTTTTA+AGG + chr5_4:56765110-56765129 None:intergenic 30.0%
ACATAAACTTTATTAAGGCG+TGG + chr5_4:56765118-56765137 None:intergenic 30.0%
ACGCCTTAATAAAGTTTATG+TGG - chr5_4:56765117-56765136 Msa0858910:intron 30.0%
CGCCTTAATAAAGTTTATGT+GGG - chr5_4:56765118-56765137 Msa0858910:intron 30.0%
!! AAGTTTATGTGGGTTGTTTT+TGG - chr5_4:56765128-56765147 Msa0858910:intron 30.0%
TTTACTTAGTAGTTGATCCA+TGG - chr5_4:56765168-56765187 Msa0858910:intron 30.0%
!! GCAAATGTTTTTGATCATGA+TGG - chr5_4:56765448-56765467 Msa0858910:intron 30.0%
!!! GATCTAATGGTTGTTTTAAG+TGG + chr5_4:56765475-56765494 None:intergenic 30.0%
ATTGAGACTACTTGATCTAA+TGG + chr5_4:56765488-56765507 None:intergenic 30.0%
AATTTCATTCGGAAATAGGT+TGG + chr5_4:56765585-56765604 None:intergenic 30.0%
AAAGTTAAGAGCCAAAAAGT+TGG - chr5_4:56765746-56765765 Msa0858910:CDS 30.0%
! CAAGAATAGTTCCAACTTTT+TGG + chr5_4:56765760-56765779 None:intergenic 30.0%
ATGTAAGAGAAGATTGAAGT+TGG - chr5_4:56766029-56766048 Msa0858910:five_prime_UTR 30.0%
! TAAATTACTTTCAAGTCGGA+TGG - chr5_4:56766053-56766072 Msa0858910:five_prime_UTR 30.0%
! AAATTACTTTCAAGTCGGAT+GGG - chr5_4:56766054-56766073 Msa0858910:five_prime_UTR 30.0%
! GATTTTGCACAGAACGAAAA+TGG + chr5_4:56759725-56759744 None:intergenic 35.0%
! ACAAAACACCGGTTAAAACA+CGG + chr5_4:56759889-56759908 None:intergenic 35.0%
AGAGATAATGTTGCACTGAA+AGG - chr5_4:56760193-56760212 Msa0858910:three_prime_UTR 35.0%
AATCTAGTGAAGAGGAAAGA+GGG - chr5_4:56760355-56760374 Msa0858910:three_prime_UTR 35.0%
! ATTACCCTCTCTTGTTTAGA+GGG - chr5_4:56760432-56760451 Msa0858910:three_prime_UTR 35.0%
AATACCCTCTAAACAAGAGA+GGG + chr5_4:56760439-56760458 None:intergenic 35.0%
AAATACCCTCTAAACAAGAG+AGG + chr5_4:56760440-56760459 None:intergenic 35.0%
! TGATTGGTTGATATCATGAG+GGG + chr5_4:56762717-56762736 None:intergenic 35.0%
CACAAATATATCTCCAAAGG+TGG - chr5_4:56760864-56760883 Msa0858910:intron 35.0%
!!! TTTGGGGTTATTTTTATGCC+GGG + chr5_4:56761039-56761058 None:intergenic 35.0%
ATTTCACAAATGTTGCAAGG+CGG + chr5_4:56761158-56761177 None:intergenic 35.0%
! ATACCTGACGGCATTTTTAT+CGG + chr5_4:56761609-56761628 None:intergenic 35.0%
!! ACTTTAAGGATTTTGCTAGC+AGG - chr5_4:56761750-56761769 Msa0858910:intron 35.0%
!!! GGAGTTTGCTAGCATTTTTT+CGG - chr5_4:56761794-56761813 Msa0858910:intron 35.0%
! TGATTGGTTGATATCATGAG+AGG - chr5_4:56762717-56762736 Msa0858910:intron 35.0%
! GATTGGTTGATATCATGAGA+GGG - chr5_4:56762718-56762737 Msa0858910:intron 35.0%
AATTACCCCTTAAACAAGAG+AGG - chr5_4:56762742-56762761 Msa0858910:intron 35.0%
ATTACCCCTTAAACAAGAGA+GGG - chr5_4:56762743-56762762 Msa0858910:intron 35.0%
!! TACTATTGGTGTCAATGTGT+CGG + chr5_4:56762903-56762922 None:intergenic 35.0%
AACACTTCAAAGGTTAACAC+AGG - chr5_4:56763155-56763174 Msa0858910:intron 35.0%
!!! GCACGGTTAGTTTCTTTTTT+TGG - chr5_4:56763491-56763510 Msa0858910:intron 35.0%
AATTCAGACTCAATTAAGGC+AGG + chr5_4:56763573-56763592 None:intergenic 35.0%
! TGTGATGTGTGTGGATTTTA+TGG - chr5_4:56763592-56763611 Msa0858910:intron 35.0%
AATTGATGAATTTGTGGGCT+TGG - chr5_4:56763676-56763695 Msa0858910:intron 35.0%
!! TTTTTCAGATCACGCTTTCT+TGG + chr5_4:56763807-56763826 None:intergenic 35.0%
!! TTTCATCAAGTTGAGATTGC+TGG - chr5_4:56763886-56763905 Msa0858910:intron 35.0%
TATGACACAGAAACCAAACT+GGG - chr5_4:56763919-56763938 Msa0858910:intron 35.0%
!! ATCATTACTGATTCCCAGTT+TGG + chr5_4:56763935-56763954 None:intergenic 35.0%
AACAGGGAATCACGATATTA+AGG + chr5_4:56764082-56764101 None:intergenic 35.0%
TAATATCGTGATTCCCTGTT+TGG - chr5_4:56764082-56764101 Msa0858910:intron 35.0%
ACAAAATATTTCGGATGCCA+GGG + chr5_4:56764171-56764190 None:intergenic 35.0%
TACAAAATATTTCGGATGCC+AGG + chr5_4:56764172-56764191 None:intergenic 35.0%
GAAAATCCAATCATCCAATC+AGG + chr5_4:56764343-56764362 None:intergenic 35.0%
AAACATGTCTTACATTGTGC+AGG + chr5_4:56764455-56764474 None:intergenic 35.0%
! TTTGTGGAAAGCGAGTTTTT+GGG - chr5_4:56764622-56764641 Msa0858910:intron 35.0%
AGACACCTGAAATTACATCA+AGG + chr5_4:56764947-56764966 None:intergenic 35.0%
! TTGATGTAATTTCAGGTGTC+TGG - chr5_4:56764946-56764965 Msa0858910:intron 35.0%
TTCTTAGATTCACTAGTGCT+TGG + chr5_4:56765247-56765266 None:intergenic 35.0%
!!! ACGACTTTTTTTGCATAGCA+GGG - chr5_4:56765307-56765326 Msa0858910:intron 35.0%
!! ATAAGGGCACTATTGTACAT+TGG - chr5_4:56765407-56765426 Msa0858910:intron 35.0%
!! TAAGGGCACTATTGTACATT+GGG - chr5_4:56765408-56765427 Msa0858910:intron 35.0%
AAGAGAATGTGAGGATTCTA+CGG + chr5_4:56765527-56765546 None:intergenic 35.0%
AGATAACGAAAGAGAATGTG+AGG + chr5_4:56765536-56765555 None:intergenic 35.0%
TACTCTTCATGCTATGAAAG+AGG - chr5_4:56765648-56765667 Msa0858910:intron 35.0%
ACTTGAATACTTTAGGTGTC+AGG + chr5_4:56765675-56765694 None:intergenic 35.0%
! ACCTAAAGTATTCAAGTCCT+GGG - chr5_4:56765678-56765697 Msa0858910:intron 35.0%
TTGTTCCTATTTGTGGAATG+TGG + chr5_4:56765716-56765735 None:intergenic 35.0%
!! CACTTTGTTGTTCCTATTTG+TGG + chr5_4:56765723-56765742 None:intergenic 35.0%
TGAATCACACAATCACTCTT+TGG + chr5_4:56765950-56765969 None:intergenic 35.0%
TGATTGTGTGATTCACAACA+CGG - chr5_4:56765955-56765974 Msa0858910:CDS 35.0%
CAGAACGAAAATGGAGAGAA+AGG + chr5_4:56759716-56759735 None:intergenic 40.0%
!! AGCTTTGAGAAGCATGGTTA+GGG + chr5_4:56759747-56759766 None:intergenic 40.0%
TTACTTCCACGTTGAAGCAA+CGG + chr5_4:56759821-56759840 None:intergenic 40.0%
GCTTCAACGTGGAAGTAAAT+TGG - chr5_4:56759823-56759842 Msa0858910:three_prime_UTR 40.0%
TGACGAGCTAAAGAATCTTG+AGG + chr5_4:56759962-56759981 None:intergenic 40.0%
GAATCTAGTGAAGAGGAAAG+AGG - chr5_4:56760354-56760373 Msa0858910:three_prime_UTR 40.0%
! GATTACCCTCTCTTGTTTAG+AGG - chr5_4:56760431-56760450 Msa0858910:three_prime_UTR 40.0%
! GATTGGTTGATATCATGAGG+GGG + chr5_4:56760464-56760483 None:intergenic 40.0%
GAGAGATAAAGGACCTAAAC+AGG - chr5_4:56761422-56761441 Msa0858910:intron 40.0%
GCTGAAATGGTTATGTCATG+AGG + chr5_4:56761822-56761841 None:intergenic 40.0%
! TTTATCGGTTGCTGCTGAAA+TGG + chr5_4:56761594-56761613 None:intergenic 40.0%
GATAAAAATGCCGTCAGGTA+TGG - chr5_4:56761608-56761627 Msa0858910:intron 40.0%
GTAATTCTCACCATACCTGA+CGG + chr5_4:56761621-56761640 None:intergenic 40.0%
AAACTCCCAAAACATCACAG+CGG + chr5_4:56761781-56761800 None:intergenic 40.0%
!! TTTTTCGGTTGCTGCTGAAA+TGG - chr5_4:56761809-56761828 Msa0858910:intron 40.0%
! TATGTTTGGAATAAGGGGGA+GGG + chr5_4:56761977-56761996 None:intergenic 40.0%
! ATATGTTTGGAATAAGGGGG+AGG + chr5_4:56761978-56761997 None:intergenic 40.0%
TTCAAGCTTCTCTTAAGGGA+GGG + chr5_4:56762018-56762037 None:intergenic 40.0%
ATTCAAGCTTCTCTTAAGGG+AGG + chr5_4:56762019-56762038 None:intergenic 40.0%
TTCAAGCATCTTATAGGGAG+AGG - chr5_4:56762507-56762526 Msa0858910:intron 40.0%
! GTTACCCTCTCTTGTTTAAG+GGG + chr5_4:56762750-56762769 None:intergenic 40.0%
! CGTTACCCTCTCTTGTTTAA+GGG + chr5_4:56762751-56762770 None:intergenic 40.0%
! ACGTTACCCTCTCTTGTTTA+AGG + chr5_4:56762752-56762771 None:intergenic 40.0%
GTTAATGCAGTTCGTACACA+TGG + chr5_4:56763249-56763268 None:intergenic 40.0%
TGAGTTTGATCATGCCGATA+AGG - chr5_4:56763458-56763477 Msa0858910:intron 40.0%
GAGTTTGATCATGCCGATAA+GGG - chr5_4:56763459-56763478 Msa0858910:intron 40.0%
AGTCTGAATTGTGATGTGTG+TGG - chr5_4:56763583-56763602 Msa0858910:intron 40.0%
!! TTTCATCAAGTTGAGCTTGC+TGG - chr5_4:56763857-56763876 Msa0858910:intron 40.0%
CTATGACACAGAAACCAAAC+TGG - chr5_4:56763918-56763937 Msa0858910:intron 40.0%
CTGGTATCCAATTCCAAACA+GGG + chr5_4:56764098-56764117 None:intergenic 40.0%
ACATGGTCACAATTAAGGGA+TGG + chr5_4:56764124-56764143 None:intergenic 40.0%
GCAATGAGTAACACAAGATG+TGG - chr5_4:56764301-56764320 Msa0858910:intron 40.0%
GTCACATTGTACTACCTGAT+TGG - chr5_4:56764326-56764345 Msa0858910:intron 40.0%
GTACTACCTGATTGGATGAT+TGG - chr5_4:56764334-56764353 Msa0858910:intron 40.0%
AATGGAACTTGCATTGTCCT+TGG - chr5_4:56764401-56764420 Msa0858910:intron 40.0%
! CTCATTTGTTAGCTTCTCCA+AGG + chr5_4:56764421-56764440 None:intergenic 40.0%
GTCTTACATTGTGCAGGTTA+AGG + chr5_4:56764449-56764468 None:intergenic 40.0%
!!! GTTTGTTGAGTTTTGGTGTC+TGG - chr5_4:56764471-56764490 Msa0858910:intron 40.0%
!!! GAGTTTTGGTGTCTGGTTTA+CGG - chr5_4:56764478-56764497 Msa0858910:intron 40.0%
!!! AGTTTTGGTGTCTGGTTTAC+GGG - chr5_4:56764479-56764498 Msa0858910:intron 40.0%
AAAGACCGGTGATGTGAATT+TGG - chr5_4:56764594-56764613 Msa0858910:intron 40.0%
TGTGAATTTGGCAGACTTTG+TGG - chr5_4:56764606-56764625 Msa0858910:intron 40.0%
! CTTTGTGGAAAGCGAGTTTT+TGG - chr5_4:56764621-56764640 Msa0858910:intron 40.0%
TCTTAGCTGAGCAACATACT+CGG + chr5_4:56764809-56764828 None:intergenic 40.0%
GGCTTCCTTGATGTAATTTC+AGG - chr5_4:56764939-56764958 Msa0858910:intron 40.0%
ACTTAGTAGTTGATCCATGG+TGG - chr5_4:56765171-56765190 Msa0858910:intron 40.0%
AGAAGAAAAACGAACCACCA+TGG + chr5_4:56765188-56765207 None:intergenic 40.0%
TGCAAAAAAAGTCGTGCACT+TGG + chr5_4:56765302-56765321 None:intergenic 40.0%
!!! CACGACTTTTTTTGCATAGC+AGG - chr5_4:56765306-56765325 Msa0858910:intron 40.0%
!! AAGGGCACTATTGTACATTG+GGG - chr5_4:56765409-56765428 Msa0858910:intron 40.0%
TATTGTACATTGGGGAGCTT+AGG - chr5_4:56765417-56765436 Msa0858910:intron 40.0%
! CACCTAAAGTATTCAAGTCC+TGG - chr5_4:56765677-56765696 Msa0858910:intron 40.0%
ACCCAGGACTTGAATACTTT+AGG + chr5_4:56765682-56765701 None:intergenic 40.0%
CACACAATCACTCTTTGGAT+TGG + chr5_4:56765945-56765964 None:intergenic 40.0%
GATTGTGTGATTCACAACAC+GGG - chr5_4:56765956-56765975 Msa0858910:CDS 40.0%
!! CAGCTTTGAGAAGCATGGTT+AGG + chr5_4:56759748-56759767 None:intergenic 45.0%
!! TACAGCAGCTTTGAGAAGCA+TGG + chr5_4:56759753-56759772 None:intergenic 45.0%
CAATTCCGAAAACACGCGTT+TGG - chr5_4:56759793-56759812 Msa0858910:three_prime_UTR 45.0%
TCGTAGCAGAAACAGCGATT+CGG + chr5_4:56759850-56759869 None:intergenic 45.0%
!! ATCGCTGTTTCTGCTACGAA+AGG - chr5_4:56759851-56759870 Msa0858910:three_prime_UTR 45.0%
AGGGCATGCTGAGAAATTGA+TGG - chr5_4:56760374-56760393 Msa0858910:three_prime_UTR 45.0%
CAACCGATAAAAATGCCGTC+AGG - chr5_4:56761603-56761622 Msa0858910:intron 45.0%
!! TGACGTGGTTCTGGAAAGAA+CGG + chr5_4:56761643-56761662 None:intergenic 45.0%
! TGTTGCCGCTGTGATGTTTT+GGG - chr5_4:56761773-56761792 Msa0858910:intron 45.0%
! ATGTTTGGAATAAGGGGGAG+GGG + chr5_4:56761976-56761995 None:intergenic 45.0%
TCAAGCTTCTCTTAAGGGAG+GGG + chr5_4:56762017-56762036 None:intergenic 45.0%
TGTATGTGTCCGTGCTTCAT+AGG + chr5_4:56762860-56762879 None:intergenic 45.0%
ATGAAGCACGGACACATACA+CGG - chr5_4:56762860-56762879 Msa0858910:intron 45.0%
ACGTCGTAAACTCTGACACT+TGG - chr5_4:56762933-56762952 Msa0858910:intron 45.0%
AAACTCTGACACTTGGACAC+AGG - chr5_4:56762940-56762959 Msa0858910:intron 45.0%
GGTTATTGGGCTTGTGCTAT+TGG + chr5_4:56763127-56763146 None:intergenic 45.0%
GCATGATCAAACTCAGAGAG+CGG + chr5_4:56763453-56763472 None:intergenic 45.0%
! CGTGATTCCCTGTTTGGAAT+TGG - chr5_4:56764088-56764107 Msa0858910:intron 45.0%
CCTGGTATCCAATTCCAAAC+AGG + chr5_4:56764099-56764118 None:intergenic 45.0%
! CCTGTTTGGAATTGGATACC+AGG - chr5_4:56764096-56764115 Msa0858910:intron 45.0%
ATTCACATCACCGGTCTTTG+AGG + chr5_4:56764593-56764612 None:intergenic 45.0%
GTCTGCCAAATTCACATCAC+CGG + chr5_4:56764602-56764621 None:intergenic 45.0%
!!! AAGCGAGTTTTTGGGTGAAC+AGG - chr5_4:56764630-56764649 Msa0858910:intron 45.0%
GTTGCTCAGCTAAGAAGAGT+TGG - chr5_4:56764814-56764833 Msa0858910:intron 45.0%
CAGCTAAGAAGAGTTGGCAA+AGG - chr5_4:56764820-56764839 Msa0858910:intron 45.0%
AGAAGAGTTGGCAAAGGACA+TGG - chr5_4:56764826-56764845 Msa0858910:intron 45.0%
TGCGACCACATTCCACAAAT+AGG - chr5_4:56765708-56765727 Msa0858910:intron 45.0%
!!! TTGATTTATTTAATTAATTT+TGG - chr5_4:56760085-56760104 Msa0858910:three_prime_UTR 5.0%
!!! ATAAAAAAAAAATCAATTTT+AGG - chr5_4:56760540-56760559 Msa0858910:three_prime_UTR 5.0%
!! TAGAAAATAATAATAATATA+TGG + chr5_4:56761002-56761021 None:intergenic 5.0%
!!! TCTTTTATTTAATTATATTA+AGG + chr5_4:56761895-56761914 None:intergenic 5.0%
!! TTATTAAAAAAAATATATTG+AGG + chr5_4:56762084-56762103 None:intergenic 5.0%
!!! ATTATTGTAATTTTATTTTT+TGG + chr5_4:56762257-56762276 None:intergenic 5.0%
!!! TTTTTTATTTTTAGAAAAAA+TGG - chr5_4:56762650-56762669 Msa0858910:intron 5.0%
! CGGAACCAAACGCGTGTTTT+CGG + chr5_4:56759801-56759820 None:intergenic 50.0%
TTGGTTCCGTTGCTTCAACG+TGG - chr5_4:56759812-56759831 Msa0858910:three_prime_UTR 50.0%
!! GGTGTTGGTGTTGAACAGTG+TGG - chr5_4:56760123-56760142 Msa0858910:three_prime_UTR 50.0%
AAATGTTGCAAGGCGGATGG+TGG + chr5_4:56761151-56761170 None:intergenic 50.0%
CACAAATGTTGCAAGGCGGA+TGG + chr5_4:56761154-56761173 None:intergenic 50.0%
GTTCTTTCCAGAACCACGTC+AGG - chr5_4:56761642-56761661 Msa0858910:intron 50.0%
TTCCAGAACCACGTCAGGTA+TGG - chr5_4:56761647-56761666 Msa0858910:intron 50.0%
TCAACTCACCATACCTGACG+TGG + chr5_4:56761658-56761677 None:intergenic 50.0%
! GTGTTGCCGCTGTGATGTTT+TGG - chr5_4:56761772-56761791 Msa0858910:intron 50.0%
! GTGCAAAGCGTCACCCTTAT+CGG + chr5_4:56763475-56763494 None:intergenic 50.0%
GATAAGGGTGACGCTTTGCA+CGG - chr5_4:56763474-56763493 Msa0858910:intron 50.0%
CACAATTAAGGGATGGTGCC+TGG + chr5_4:56764117-56764136 None:intergenic 50.0%
TTCCAGGTTGCCTCAAAGAC+CGG - chr5_4:56764580-56764599 Msa0858910:intron 50.0%
!!! TAAGGCGTGGTTTTAAGGCG+TGG + chr5_4:56765105-56765124 None:intergenic 50.0%
GATGGGACATGCGTCATACA+CGG - chr5_4:56766071-56766090 Msa0858910:five_prime_UTR 50.0%
TAGTCACTGGCGGAAGGGTT+AGG + chr5_4:56761123-56761142 None:intergenic 55.0%
AGGCTTAGTCACTGGCGGAA+GGG + chr5_4:56761128-56761147 None:intergenic 55.0%
!! GATGGTGGAGGCTTAGTCAC+TGG + chr5_4:56761136-56761155 None:intergenic 55.0%
CACCATACCTGACGTGGTTC+TGG + chr5_4:56761652-56761671 None:intergenic 55.0%
TGTGGTCGCATGTGAAACCC+AGG + chr5_4:56765698-56765717 None:intergenic 55.0%
GAGGCTTAGTCACTGGCGGA+AGG + chr5_4:56761129-56761148 None:intergenic 60.0%
GGTGGAGGCTTAGTCACTGG+CGG + chr5_4:56761133-56761152 None:intergenic 60.0%
! TGTTGCAAGGCGGATGGTGG+AGG + chr5_4:56761148-56761167 None:intergenic 60.0%
!! CACCGGTCTTTGAGGCAACC+TGG + chr5_4:56764585-56764604 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 56759631 56766108 56759631 ID=Msa0858910;Name=Msa0858910
chr5_4 mRNA 56759631 56766108 56759631 ID=Msa0858910-mRNA-1;Parent=Msa0858910;Name=Msa0858910-mRNA-1;_AED=0.09;_eAED=0.09;_QI=121|0.85|0.87|1|0.85|0.75|8|1036|226
chr5_4 exon 56759631 56759916 56759631 ID=Msa0858910-mRNA-1:exon:17345;Parent=Msa0858910-mRNA-1
chr5_4 exon 56759979 56760778 56759979 ID=Msa0858910-mRNA-1:exon:17344;Parent=Msa0858910-mRNA-1
chr5_4 exon 56760892 56760955 56760892 ID=Msa0858910-mRNA-1:exon:17343;Parent=Msa0858910-mRNA-1
chr5_4 exon 56761088 56761153 56761088 ID=Msa0858910-mRNA-1:exon:17342;Parent=Msa0858910-mRNA-1
chr5_4 exon 56761278 56761339 56761278 ID=Msa0858910-mRNA-1:exon:17341;Parent=Msa0858910-mRNA-1
chr5_4 exon 56762244 56762323 56762244 ID=Msa0858910-mRNA-1:exon:17340;Parent=Msa0858910-mRNA-1
chr5_4 exon 56765515 56765598 56765515 ID=Msa0858910-mRNA-1:exon:17339;Parent=Msa0858910-mRNA-1
chr5_4 exon 56765713 56766108 56765713 ID=Msa0858910-mRNA-1:exon:17338;Parent=Msa0858910-mRNA-1
chr5_4 five_prime_UTR 56765988 56766108 56765988 ID=Msa0858910-mRNA-1:five_prime_utr;Parent=Msa0858910-mRNA-1
chr5_4 CDS 56765713 56765987 56765713 ID=Msa0858910-mRNA-1:cds;Parent=Msa0858910-mRNA-1
chr5_4 CDS 56765515 56765598 56765515 ID=Msa0858910-mRNA-1:cds;Parent=Msa0858910-mRNA-1
chr5_4 CDS 56762244 56762323 56762244 ID=Msa0858910-mRNA-1:cds;Parent=Msa0858910-mRNA-1
chr5_4 CDS 56761278 56761339 56761278 ID=Msa0858910-mRNA-1:cds;Parent=Msa0858910-mRNA-1
chr5_4 CDS 56761088 56761153 56761088 ID=Msa0858910-mRNA-1:cds;Parent=Msa0858910-mRNA-1
chr5_4 CDS 56760892 56760955 56760892 ID=Msa0858910-mRNA-1:cds;Parent=Msa0858910-mRNA-1
chr5_4 CDS 56760729 56760778 56760729 ID=Msa0858910-mRNA-1:cds;Parent=Msa0858910-mRNA-1
chr5_4 three_prime_UTR 56759979 56760728 56759979 ID=Msa0858910-mRNA-1:three_prime_utr;Parent=Msa0858910-mRNA-1
chr5_4 three_prime_UTR 56759631 56759916 56759631 ID=Msa0858910-mRNA-1:three_prime_utr;Parent=Msa0858910-mRNA-1
Gene Sequence

>Msa0858910

ATGCTTCTCAAAGCTGCTGTAAACGCTAACGCTTCTCTTTTCAATTCCGAAAACACGCGTTTGGTTCCGTTGCTTCAACGTGGAAGTAAATTGGACCGAATCGCTGTTTCTGCTACGAAAGGTTCGAACAATAACCGTGTTTTAACCGGTGTTTTGTTTGAACCTTTTGAAGAGGTTAAAAAGGAACTTGATCTTGTTCCTATTGTTCCTCAAGATTCTTTAGCTCGTCATAAATTTCATGTTGATTCTGAATCTGCCATTAATGAACAAATCAATGTGGAGTATAATGTTTCGTATGTTTATCATGCGATGTATGCGTATTTCGATAGAGATAATGTTGCACTGAAAGGTCTTGCTAAGGGTGGAAAAGTGAAGTTGCAGTCTATAGTGATGCCGCTCTCTGAGTTTGATCATGCCGATAAGGGTGACGCTTTGCACGCAATGGAACTTGCATTGTCCTTGGAGAAGCTAACAAATGAGAAACTCCTTAACCTGCACAATGTTGCCTCAAAGACCGGTGATGTGAATTTGGCAGACTTTGTGGAAAGCGAGTTTTTGGGTGAACAGGTGGAAGCCATCAAAAAAATATCCGAGTATGTTGCTCAGCTAAGAAGAGTTGGCAAAGGACATGGTGTCTGGCACTTTGATCAGATGTTGCTCAACGAAGCAGCTGCAGCTTGA
Protein sequence

>Msa0858910

MLLKAAVNANASLFNSENTRLVPLLQRGSKLDRIAVSATKGSNNNRVLTGVLFEPFEEVKKELDLVPIVPQDSLARHKFHVDSESAINEQINVEYNVSYVYHAMYAYFDRDNVALKGLAKGGKVKLQSIVMPLSEFDHADKGDALHAMELALSLEKLTNEKLLNLHNVASKTGDVNLADFVESEFLGEQVEAIKKISEYVAQLRRVGKGHGVWHFDQMLLNEAAAA*