AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1198450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1198450 MtrunA17_Chr8g0367981 92.049 327 19 2 1 326 1 321 0.0 576
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1198450 AT3G26580.1 56.410 351 127 5 1 326 1 350 9.04e-129 372

Find 101 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAAAGCTGAAGAGTATT+TGG 0.185288 8_1:+50004436 Msa1198450:CDS
ATACCAAGATCTACATTATT+TGG 0.191918 8_1:+50005845 Msa1198450:CDS
GCAATCCTTATGGCGATTAT+TGG 0.215703 8_1:-50006031 None:intergenic
AGTGATGAGGAAGGAGGGTT+AGG 0.259304 8_1:+50004344 Msa1198450:CDS
TGCAGAACTTCGTTACATTT+TGG 0.260230 8_1:+50006113 Msa1198450:CDS
TGAAGAGTATTTGGAGAGTA+AGG 0.278180 8_1:+50004445 Msa1198450:CDS
GATTTGGGTAAGAAAGCTTA+TGG 0.281355 8_1:+50005770 Msa1198450:CDS
TCTGGGTTGGTTTGACCATA+TGG 0.289235 8_1:+50009015 Msa1198450:CDS
GTGAATTTCAGATACAAATA+TGG 0.289294 8_1:+50005989 Msa1198450:intron
AGCTCAGTTGATGTATGATT+TGG 0.292561 8_1:+50005754 Msa1198450:CDS
TGGAGACCTCCTGCTGGATT+AGG 0.310419 8_1:+50008978 Msa1198450:CDS
AAATTAGAATCGTCATAAAT+TGG 0.310654 8_1:-50009108 None:intergenic
GTGATGAGGAAGGAGGGTTA+GGG 0.325087 8_1:+50004345 Msa1198450:CDS
AAGAGAAGAGGATGAGAGTT+AGG 0.351749 8_1:+50004495 Msa1198450:CDS
GTATAGTCACCATCTCTTCT+TGG 0.352541 8_1:-50006158 None:intergenic
AATTATTGTATGTCACAAAT+AGG 0.362264 8_1:+50009180 Msa1198450:three_prime_UTR
GGGGCGTGGACGAGTGGTGG+TGG 0.381678 8_1:+50004271 Msa1198450:CDS
TCTTGGGTTATCTTGAGCTT+TGG 0.386466 8_1:-50006141 None:intergenic
GAGAAGAGTGAAGGAGTTTG+AGG 0.386700 8_1:+50004397 Msa1198450:CDS
GGAGACCTCCTGCTGGATTA+GGG 0.406684 8_1:+50008979 Msa1198450:CDS
TATAGTCACCATCTCTTCTT+GGG 0.408773 8_1:-50006157 None:intergenic
GGAGGGGCGTGGACGAGTGG+TGG 0.410370 8_1:+50004268 Msa1198450:CDS
TTATCTTTAGATGATGGAAA+TGG 0.418345 8_1:-50008936 None:intergenic
CTGTCGAGAGTTAAGCTTCG+TGG 0.419384 8_1:-50004158 None:intergenic
CTTGTGTGGAGACCTCCTGC+TGG 0.426709 8_1:+50008972 Msa1198450:CDS
TGACGTTTGATGCTAATACT+AGG 0.431805 8_1:-50006087 None:intergenic
GCTCAGTTGATGTATGATTT+GGG 0.432267 8_1:+50005755 Msa1198450:CDS
TGTGGTTGTAGTAACTTGTA+AGG 0.434312 8_1:-50004025 None:intergenic
AAAGAGCAATGCAATCCTTA+TGG 0.434951 8_1:-50006041 None:intergenic
GATGGCTATGGGATATTTGT+CGG 0.436053 8_1:-50003997 None:intergenic
TTTCAAGAGGACAACCAAAC+GGG 0.436721 8_1:-50009229 None:intergenic
TGGAGAAGTGGAACTCTGTA+TGG 0.438134 8_1:-50009088 None:intergenic
CCACCAAATAATGTAGATCT+TGG 0.439479 8_1:-50005848 None:intergenic
AGTTAGGAAAGAGCTTGAAA+AGG 0.442833 8_1:+50004511 Msa1198450:CDS
ACCATATGGTTGGTATTAGT+TGG 0.445104 8_1:+50009029 Msa1198450:CDS
ATTTGGGTAAGAAAGCTTAT+GGG 0.445943 8_1:+50005771 Msa1198450:CDS
GGACGAGTGGTGGTGGCTCG+TGG 0.451694 8_1:+50004278 Msa1198450:CDS
TCCACCATGGCTGTAAGCTT+AGG 0.453178 8_1:+50004104 Msa1198450:exon
ATGGCTGGCTATGGCTTATG+AGG 0.453962 8_1:+50006008 Msa1198450:CDS
TGAAGATATGTCGAGGAGTA+AGG 0.455683 8_1:-50004135 None:intergenic
GAGGAAGGAGGGTTAGGGGA+TGG 0.462443 8_1:+50004350 Msa1198450:CDS
GTCATAACTAGAACCAATCA+AGG 0.468929 8_1:-50006181 None:intergenic
ATGGTGACTATACCCTTGAT+TGG 0.471938 8_1:+50006168 Msa1198450:CDS
TGATGAGGAAGGAGGGTTAG+GGG 0.481857 8_1:+50004346 Msa1198450:CDS
ATATGTCGAGGAGTAAGGTT+AGG 0.490226 8_1:-50004130 None:intergenic
CGTGCCGTTGAGTTTCTTGA+AGG 0.493680 8_1:+50005809 Msa1198450:CDS
TTGGAGAGTAAGGGTGATGA+TGG 0.493963 8_1:+50004455 Msa1198450:CDS
GACGTTTGATGCTAATACTA+GGG 0.495643 8_1:-50006086 None:intergenic
ATCTACATTATTTGGTGGTG+AGG 0.501114 8_1:+50005853 Msa1198450:CDS
TACAATCTTGTAATTTCAAG+AGG 0.502832 8_1:-50009242 None:intergenic
TTTGAATGTTGAAAAGGAAG+AGG 0.509641 8_1:-50004061 None:intergenic
TGTAAGGAAGAAGATGGCTA+TGG 0.510587 8_1:-50004009 None:intergenic
TGATTGGTTCTAGTTATGAC+AGG 0.513314 8_1:+50006184 Msa1198450:CDS
ACCAACTAATACCAACCATA+TGG 0.521837 8_1:-50009030 None:intergenic
GAATCAGGTGGCTAAGGAGC+AGG 0.526095 8_1:+50005715 Msa1198450:intron
CCAAGATCTACATTATTTGG+TGG 0.527272 8_1:+50005848 Msa1198450:CDS
ATTTCAAGAGGACAACCAAA+CGG 0.528286 8_1:-50009230 None:intergenic
GAGAAGGTGCCACACGTCAC+TGG 0.529053 8_1:+50003947 None:intergenic
TGGAAAAGAGAGAAGAAAGA+AGG 0.529382 8_1:-50004085 None:intergenic
AAGAGAGTGAGGAAGAGAAG+AGG 0.534892 8_1:+50004483 Msa1198450:CDS
GCTTATGGGAGAGGCACGTA+TGG 0.534948 8_1:+50005785 Msa1198450:CDS
GGTTGGTTTGACCATATGGT+TGG 0.536519 8_1:+50009019 Msa1198450:CDS
TAAGGAGCAGGCAGAGAGGA+GGG 0.539752 8_1:+50005727 Msa1198450:CDS
GGTAAGAAAGCTTATGGGAG+AGG 0.539832 8_1:+50005776 Msa1198450:CDS
ATCGTCATAAATTGGAGAAG+TGG 0.540050 8_1:-50009100 None:intergenic
GCAGTAACGTGGAAATGTGT+AGG 0.542502 8_1:-50003970 None:intergenic
TGAGGCCAATAATCGCCATA+AGG 0.547038 8_1:+50006026 Msa1198450:CDS
GACGAGTGGTGGTGGCTCGT+GGG 0.547546 8_1:+50004279 Msa1198450:CDS
GTTTCCTAAGCTTACAGCCA+TGG 0.550071 8_1:-50004108 None:intergenic
TAATGTAGATCTTGGTATGA+TGG 0.552370 8_1:-50005840 None:intergenic
ATTTCAGATACAAATATGGC+TGG 0.553752 8_1:+50005993 Msa1198450:intron
GAAGATAAGGAGAAGAGTGA+AGG 0.556556 8_1:+50004388 Msa1198450:CDS
GAAGAGTATTTGGAGAGTAA+GGG 0.556657 8_1:+50004446 Msa1198450:CDS
TGATGGTGAGGAAGAGAGTG+AGG 0.565673 8_1:+50004472 Msa1198450:CDS
GTAACTTGTAAGGAAGAAGA+TGG 0.566115 8_1:-50004015 None:intergenic
GATACAAATATGGCTGGCTA+TGG 0.569208 8_1:+50005999 Msa1198450:intron
TCTGTAGTTATGCGGGAACA+TGG 0.570481 8_1:+50008871 Msa1198450:intron
GATGAAGAGTCTCTCTTGAG+AGG 0.573372 8_1:-50004200 None:intergenic
AAGTCAAACTCGGAGCAGAA+TGG 0.574039 8_1:+50004302 Msa1198450:CDS
GAGTGAAGGAGTTTGAGGAG+AGG 0.575962 8_1:+50004402 Msa1198450:CDS
CAAGATAACCCAAGAAGAGA+TGG 0.579385 8_1:+50006149 Msa1198450:CDS
GTAAGGAAGAAGATGGCTAT+GGG 0.582455 8_1:-50004008 None:intergenic
GGCTCGTGGGAAGTCAAACT+CGG 0.583210 8_1:+50004292 Msa1198450:CDS
CTAAGGAGCAGGCAGAGAGG+AGG 0.584864 8_1:+50005726 Msa1198450:CDS
TTTGACGAATCAGGTGGCTA+AGG 0.599329 8_1:+50005709 Msa1198450:intron
TTGAGAGGTAACGTGAGAAG+AGG 0.599921 8_1:-50004185 None:intergenic
GACTCGGAGAGTGATGAGGA+AGG 0.613539 8_1:+50004335 Msa1198450:CDS
CGGAGAGTGATGAGGAAGGA+GGG 0.613981 8_1:+50004339 Msa1198450:CDS
GAGTAAGGGTGATGATGGTG+AGG 0.618593 8_1:+50004460 Msa1198450:CDS
TCGGAGAGTGATGAGGAAGG+AGG 0.623594 8_1:+50004338 Msa1198450:CDS
GAATGGAGTGGACTTTGACT+CGG 0.628890 8_1:+50004319 Msa1198450:CDS
CTTTGACTCGGAGAGTGATG+AGG 0.632280 8_1:+50004331 Msa1198450:CDS
TCCTAAGCTTACAGCCATGG+TGG 0.632513 8_1:-50004105 None:intergenic
TGCACCTTCAAGAAACTCAA+CGG 0.650398 8_1:-50005813 None:intergenic
ATCATACATCAACTGAGCTG+TGG 0.650968 8_1:-50005750 None:intergenic
AAACTCGGAGCAGAATGGAG+TGG 0.664807 8_1:+50004307 Msa1198450:CDS
TCATAACTAGAACCAATCAA+GGG 0.666833 8_1:-50006180 None:intergenic
TGGCTAAGGAGCAGGCAGAG+AGG 0.675876 8_1:+50005723 Msa1198450:CDS
TTCAAGAGGACAACCAAACG+GGG 0.676462 8_1:-50009228 None:intergenic
TTCGTGGTGAAGATATGTCG+AGG 0.678789 8_1:-50004142 None:intergenic
ATGTGTAGGCCAGTGACGTG+TGG 0.699066 8_1:-50003956 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGCAATTTTTTATTTTTT+AGG + chr8_1:50005023-50005042 Msa1198450:intron 10.0%
!! ATTTATAATATAATTGTTGA+AGG - chr8_1:50008014-50008033 None:intergenic 10.0%
!!! TGTCTTATTAAAATTAACTA+AGG + chr8_1:50006547-50006566 Msa1198450:intron 15.0%
!!! TTTTTGACAAAAAATATTGT+AGG + chr8_1:50007318-50007337 Msa1198450:intron 15.0%
!!! TTTTGACAAAAAATATTGTA+GGG + chr8_1:50007319-50007338 Msa1198450:intron 15.0%
!! ATAATGATAATAAGAAATGA+TGG - chr8_1:50008568-50008587 None:intergenic 15.0%
!! ATTTCTTATTATCATTATCA+GGG + chr8_1:50008570-50008589 Msa1198450:intron 15.0%
!!! AATTTTGTAGTGTTTGTTTT+TGG + chr8_1:50004661-50004680 Msa1198450:intron 20.0%
!! TAAACAGTAGTTTAGTATTT+AGG - chr8_1:50004692-50004711 None:intergenic 20.0%
!! TAACAAGGATAATTTCTTAA+AGG + chr8_1:50004710-50004729 Msa1198450:intron 20.0%
!! GATGTATATGATCTATATTA+TGG - chr8_1:50005075-50005094 None:intergenic 20.0%
!! CATATACATCATTTATTCAA+CGG + chr8_1:50005085-50005104 Msa1198450:intron 20.0%
!!! TTTTTGACTAATTTGTTGAT+TGG + chr8_1:50005182-50005201 Msa1198450:intron 20.0%
!!! AGATGGATTGTAATATTATA+TGG + chr8_1:50005394-50005413 Msa1198450:intron 20.0%
!!! AATAACTATTCTTGGTTTTT+TGG + chr8_1:50005422-50005441 Msa1198450:intron 20.0%
!! TTGCTTACAAATATTTGTTT+AGG - chr8_1:50005601-50005620 None:intergenic 20.0%
!!! GATTCTTATTTAGTTAAGAA+TGG - chr8_1:50005884-50005903 None:intergenic 20.0%
!!! TTAGATGATAATGTTCATAA+TGG + chr8_1:50006346-50006365 Msa1198450:intron 20.0%
!! ATCAATGATAAACTTAAGTA+TGG + chr8_1:50006456-50006475 Msa1198450:intron 20.0%
!!! GCTATTTATTTTTAGTGAAT+TGG + chr8_1:50006691-50006710 Msa1198450:intron 20.0%
!!! AATAGAGACTATATAGATTT+TGG + chr8_1:50006965-50006984 Msa1198450:intron 20.0%
!!! ATAGAGACTATATAGATTTT+GGG + chr8_1:50006966-50006985 Msa1198450:intron 20.0%
!!! AACAGCTAATACATATTTTT+TGG - chr8_1:50007044-50007063 None:intergenic 20.0%
!! AGTATTTCAATAATCTCTTT+AGG - chr8_1:50007114-50007133 None:intergenic 20.0%
!! GACTTATAAACAACTTATTT+GGG - chr8_1:50007217-50007236 None:intergenic 20.0%
!! TGACTTATAAACAACTTATT+TGG - chr8_1:50007218-50007237 None:intergenic 20.0%
!! TTACAACCTATAAATATTGT+AGG + chr8_1:50007288-50007307 Msa1198450:intron 20.0%
!! TTTGACAAAAAATATTGTAG+GGG + chr8_1:50007320-50007339 Msa1198450:intron 20.0%
!! ATTATACTTTATGTTAATGC+CGG - chr8_1:50007435-50007454 None:intergenic 20.0%
!! ATCTTGGTTAAAAATATCAA+TGG - chr8_1:50007882-50007901 None:intergenic 20.0%
!!! GATATTTTTAACCAAGATTT+TGG + chr8_1:50007884-50007903 Msa1198450:intron 20.0%
!! TTCATATCAAACATATTGTA+AGG + chr8_1:50008170-50008189 Msa1198450:intron 20.0%
!! TCATATCAAACATATTGTAA+GGG + chr8_1:50008171-50008190 Msa1198450:intron 20.0%
!!! CAAATTTTAGTATATTGGTT+AGG - chr8_1:50008293-50008312 None:intergenic 20.0%
!! AAGAATGCAATTATCAATTA+TGG + chr8_1:50008516-50008535 Msa1198450:intron 20.0%
!! CATTTCTTATTATCATTATC+AGG + chr8_1:50008569-50008588 Msa1198450:intron 20.0%
!!! TAATGAAAGTTCTTTTCATA+GGG - chr8_1:50008705-50008724 None:intergenic 20.0%
!!! AAATATACTTGTTTTTATGC+TGG + chr8_1:50008752-50008771 Msa1198450:intron 20.0%
!! AAAAAGTTATCTTTAGATGA+TGG - chr8_1:50008945-50008964 None:intergenic 20.0%
!!! ATCATCTAAAGATAACTTTT+TGG + chr8_1:50008944-50008963 Msa1198450:CDS 20.0%
!! AAATTAGAATCGTCATAAAT+TGG - chr8_1:50009111-50009130 None:intergenic 20.0%
!! AATTATTGTATGTCACAAAT+AGG + chr8_1:50009180-50009199 Msa1198450:three_prime_UTR 20.0%
!!! ATGATTTTGAAACGAAGATA+AGG + chr8_1:50004375-50004394 Msa1198450:CDS 25.0%
! TACTAAACTACTGTTTAACA+AGG + chr8_1:50004695-50004714 Msa1198450:intron 25.0%
! CAGTTATGAGAAAATCATTT+GGG - chr8_1:50004769-50004788 None:intergenic 25.0%
! ACAGTTATGAGAAAATCATT+TGG - chr8_1:50004770-50004789 None:intergenic 25.0%
! CATTGAATAAATGATGTATG+TGG + chr8_1:50005048-50005067 Msa1198450:intron 25.0%
! GTGTATGTAAAGAAAACAAA+AGG - chr8_1:50005283-50005302 None:intergenic 25.0%
!!! GTTTTCATACTTTTTGTTTG+AGG + chr8_1:50005477-50005496 Msa1198450:intron 25.0%
! ATACCAAGATCTACATTATT+TGG + chr8_1:50005845-50005864 Msa1198450:CDS 25.0%
! GTGAATTTCAGATACAAATA+TGG + chr8_1:50005989-50006008 Msa1198450:intron 25.0%
! GAAGAATGTGATAAACAAAA+AGG - chr8_1:50006250-50006269 None:intergenic 25.0%
! AATGTTCATAATGGCATAAT+AGG + chr8_1:50006355-50006374 Msa1198450:intron 25.0%
!! TAACAATCATTCTAAGAACT+TGG - chr8_1:50006526-50006545 None:intergenic 25.0%
!!! TTTTGAAATGGTCATAAACT+AGG + chr8_1:50006635-50006654 Msa1198450:intron 25.0%
! TCACTAAAAATAAATAGCAC+TGG - chr8_1:50006689-50006708 None:intergenic 25.0%
!!! GATTTGTTTTCTGTCTATAT+AGG - chr8_1:50006928-50006947 None:intergenic 25.0%
!! TAGAGACTATATAGATTTTG+GGG + chr8_1:50006967-50006986 Msa1198450:intron 25.0%
!!! AATCTCTTTAGGATAACTTA+TGG - chr8_1:50007103-50007122 None:intergenic 25.0%
! GATTCTCCTACAATATTTAT+AGG - chr8_1:50007297-50007316 None:intergenic 25.0%
! ACATCATTAGGCAAATTATT+AGG - chr8_1:50007407-50007426 None:intergenic 25.0%
! TTGTATCTATACAAACTAAG+TGG + chr8_1:50007618-50007637 Msa1198450:intron 25.0%
! GAGCTTATAAAAATTATGGT+GGG - chr8_1:50007841-50007860 None:intergenic 25.0%
! GTTGGAGCTTATAAAAATTA+TGG - chr8_1:50007845-50007864 None:intergenic 25.0%
! CATATCAAACATATTGTAAG+GGG + chr8_1:50008172-50008191 Msa1198450:intron 25.0%
! ATATCAAACATATTGTAAGG+GGG + chr8_1:50008173-50008192 Msa1198450:intron 25.0%
!!! CGAGACAAATTTTAGTATAT+TGG - chr8_1:50008298-50008317 None:intergenic 25.0%
!! TGACATTGTTTGTTAAATGT+CGG - chr8_1:50008327-50008346 None:intergenic 25.0%
!! CTAATGAAAGTTCTTTTCAT+AGG - chr8_1:50008706-50008725 None:intergenic 25.0%
!! TTTTTACATCTGTAGTTATG+CGG + chr8_1:50008863-50008882 Msa1198450:intron 25.0%
!!! TTATCTTTAGATGATGGAAA+TGG - chr8_1:50008939-50008958 None:intergenic 25.0%
!! CATACAATAATTTTACAGCA+TGG - chr8_1:50009172-50009191 None:intergenic 25.0%
!! TTTTATTATATTTCCCCGTT+TGG + chr8_1:50009215-50009234 Msa1198450:three_prime_UTR 25.0%
! TACAATCTTGTAATTTCAAG+AGG - chr8_1:50009245-50009264 None:intergenic 25.0%
! AGAGGTGAAGATATTTTATG+TGG - chr8_1:50004046-50004065 None:intergenic 30.0%
TTTGAATGTTGAAAAGGAAG+AGG - chr8_1:50004064-50004083 None:intergenic 30.0%
!!! GAAGGTTTTGAATGTTGAAA+AGG - chr8_1:50004070-50004089 None:intergenic 30.0%
! TGTTGTAGTTATGCTTTTGA+GGG + chr8_1:50004245-50004264 Msa1198450:CDS 30.0%
AACTATTACATATGAGACAG+AGG - chr8_1:50004616-50004635 None:intergenic 30.0%
!!! TGTAGTGTTTGTTTTTGGAA+AGG + chr8_1:50004666-50004685 Msa1198450:intron 30.0%
! ATCTTTTTGTTGGGACTTAT+GGG - chr8_1:50004964-50004983 None:intergenic 30.0%
TGCTTATAATTGAGACTAGA+GGG - chr8_1:50005009-50005028 None:intergenic 30.0%
TTGCTTATAATTGAGACTAG+AGG - chr8_1:50005010-50005029 None:intergenic 30.0%
TGTCAGTTGTCTAATGATAA+AGG - chr8_1:50005338-50005357 None:intergenic 30.0%
CTAGAAGTGAAACATTAAGA+TGG + chr8_1:50005377-50005396 Msa1198450:intron 30.0%
TGGTGCATAATAACTATTCT+TGG + chr8_1:50005414-50005433 Msa1198450:intron 30.0%
ATTTGGGTAAGAAAGCTTAT+GGG + chr8_1:50005771-50005790 Msa1198450:CDS 30.0%
TAATGTAGATCTTGGTATGA+TGG - chr8_1:50005843-50005862 None:intergenic 30.0%
ATTTCAGATACAAATATGGC+TGG + chr8_1:50005993-50006012 Msa1198450:intron 30.0%
TCATAACTAGAACCAATCAA+GGG - chr8_1:50006183-50006202 None:intergenic 30.0%
! TGTTTCCATTTCTTTGTTGT+TGG + chr8_1:50006308-50006327 Msa1198450:intron 30.0%
TCTTACCAACAACAAAGAAA+TGG - chr8_1:50006316-50006335 None:intergenic 30.0%
!! AAAGCATGCTTTAATTTGTG+TGG - chr8_1:50006417-50006436 None:intergenic 30.0%
ATGGTCATAAACTAGGAATT+AGG + chr8_1:50006642-50006661 Msa1198450:intron 30.0%
!! AAAAATAAATAGCACTGGCA+TGG - chr8_1:50006684-50006703 None:intergenic 30.0%
! GTATGTCTTGACTTTTATCA+TGG - chr8_1:50006742-50006761 None:intergenic 30.0%
AAAGTCAAGACATACGATTT+AGG + chr8_1:50006747-50006766 Msa1198450:intron 30.0%
AAGTCAAGACATACGATTTA+GGG + chr8_1:50006748-50006767 Msa1198450:intron 30.0%
! AGAGACTATATAGATTTTGG+GGG + chr8_1:50006968-50006987 Msa1198450:intron 30.0%
!! TAGCTGTTTCTCTATAAACA+AGG + chr8_1:50007056-50007075 Msa1198450:intron 30.0%
CTATAAACAAGGAGAAAATG+TGG + chr8_1:50007067-50007086 Msa1198450:intron 30.0%
GTATAATGTGATTATGCTTG+TGG + chr8_1:50007448-50007467 Msa1198450:intron 30.0%
!!! TCCTGATTTTTTTTAGCTGA+TGG + chr8_1:50007728-50007747 Msa1198450:intron 30.0%
GGAGCTTATAAAAATTATGG+TGG - chr8_1:50007842-50007861 None:intergenic 30.0%
TAGAATGAATTGCATATCAC+TGG + chr8_1:50008033-50008052 Msa1198450:intron 30.0%
AGAATGAATTGCATATCACT+GGG + chr8_1:50008034-50008053 Msa1198450:intron 30.0%
TATGAAGAGAGTAAAGAAGA+TGG - chr8_1:50008156-50008175 None:intergenic 30.0%
CTGGTTGATCTAAGAATTAA+AGG + chr8_1:50008209-50008228 Msa1198450:intron 30.0%
CTAAGAATTAAAGGAGTAGA+AGG + chr8_1:50008218-50008237 Msa1198450:intron 30.0%
! ACATTGTTTGTTAAATGTCG+GGG - chr8_1:50008325-50008344 None:intergenic 30.0%
! GACATTGTTTGTTAAATGTC+GGG - chr8_1:50008326-50008345 None:intergenic 30.0%
TGATGGTAACAAAACCAATA+CGG - chr8_1:50008551-50008570 None:intergenic 30.0%
TATCATTATCAGGGCTTATT+CGG + chr8_1:50008579-50008598 Msa1198450:intron 30.0%
TGTTTCATACTCTTCATTAG+TGG + chr8_1:50008666-50008685 Msa1198450:intron 30.0%
! TTTTACATCTGTAGTTATGC+GGG + chr8_1:50008864-50008883 Msa1198450:intron 30.0%
! GTAACTTGTAAGGAAGAAGA+TGG - chr8_1:50004018-50004037 None:intergenic 35.0%
! TGTGGTTGTAGTAACTTGTA+AGG - chr8_1:50004028-50004047 None:intergenic 35.0%
TGGAAAAGAGAGAAGAAAGA+AGG - chr8_1:50004088-50004107 None:intergenic 35.0%
! CTGTTGTAGTTATGCTTTTG+AGG + chr8_1:50004244-50004263 Msa1198450:CDS 35.0%
! GTTGTAGTTATGCTTTTGAG+GGG + chr8_1:50004246-50004265 Msa1198450:CDS 35.0%
!! TTGTAGTTATGCTTTTGAGG+GGG + chr8_1:50004247-50004266 Msa1198450:CDS 35.0%
!! GAAGAAAGCTGAAGAGTATT+TGG + chr8_1:50004436-50004455 Msa1198450:CDS 35.0%
!! TGAAGAGTATTTGGAGAGTA+AGG + chr8_1:50004445-50004464 Msa1198450:CDS 35.0%
!! GAAGAGTATTTGGAGAGTAA+GGG + chr8_1:50004446-50004465 Msa1198450:CDS 35.0%
AGTTAGGAAAGAGCTTGAAA+AGG + chr8_1:50004511-50004530 Msa1198450:CDS 35.0%
!! AGACAGAGGAGTACTAATTA+AGG - chr8_1:50004602-50004621 None:intergenic 35.0%
AAAACCCGAAAGCAGTTATA+TGG - chr8_1:50004860-50004879 None:intergenic 35.0%
!!! ATATAACTGCTTTCGGGTTT+TGG + chr8_1:50004859-50004878 Msa1198450:intron 35.0%
!!! TATAACTGCTTTCGGGTTTT+GGG + chr8_1:50004860-50004879 Msa1198450:intron 35.0%
CACAAGTATGTCTAGATACT+AGG - chr8_1:50004892-50004911 None:intergenic 35.0%
! TGATCCTCTCTAGTGTTTTA+AGG + chr8_1:50004935-50004954 Msa1198450:intron 35.0%
! GATCTTTTTGTTGGGACTTA+TGG - chr8_1:50004965-50004984 None:intergenic 35.0%
! ACTCTCTCGATCTTTTTGTT+GGG - chr8_1:50004973-50004992 None:intergenic 35.0%
CAAAGTTTCACGATAACAGT+GGG - chr8_1:50005251-50005270 None:intergenic 35.0%
ACAAAGTTTCACGATAACAG+TGG - chr8_1:50005252-50005271 None:intergenic 35.0%
ACTGTTATCGTGAAACTTTG+TGG + chr8_1:50005251-50005270 Msa1198450:intron 35.0%
!! TTCACTTCTAGTGACTTGTT+AGG - chr8_1:50005368-50005387 None:intergenic 35.0%
!! GACCATTATTTTTCTCCTCT+CGG + chr8_1:50005639-50005658 Msa1198450:intron 35.0%
!! ACCATTATTTTTCTCCTCTC+GGG + chr8_1:50005640-50005659 Msa1198450:intron 35.0%
ACTCGTTGACATATTGTTTG+TGG + chr8_1:50005686-50005705 Msa1198450:intron 35.0%
! AGCTCAGTTGATGTATGATT+TGG + chr8_1:50005754-50005773 Msa1198450:CDS 35.0%
! GCTCAGTTGATGTATGATTT+GGG + chr8_1:50005755-50005774 Msa1198450:CDS 35.0%
GATTTGGGTAAGAAAGCTTA+TGG + chr8_1:50005770-50005789 Msa1198450:CDS 35.0%
CCACCAAATAATGTAGATCT+TGG - chr8_1:50005851-50005870 None:intergenic 35.0%
CCAAGATCTACATTATTTGG+TGG + chr8_1:50005848-50005867 Msa1198450:CDS 35.0%
!! ATCTACATTATTTGGTGGTG+AGG + chr8_1:50005853-50005872 Msa1198450:CDS 35.0%
AAAGAGCAATGCAATCCTTA+TGG - chr8_1:50006044-50006063 None:intergenic 35.0%
GACGTTTGATGCTAATACTA+GGG - chr8_1:50006089-50006108 None:intergenic 35.0%
TGACGTTTGATGCTAATACT+AGG - chr8_1:50006090-50006109 None:intergenic 35.0%
! TGCAGAACTTCGTTACATTT+TGG + chr8_1:50006113-50006132 Msa1198450:CDS 35.0%
TATAGTCACCATCTCTTCTT+GGG - chr8_1:50006160-50006179 None:intergenic 35.0%
GTCATAACTAGAACCAATCA+AGG - chr8_1:50006184-50006203 None:intergenic 35.0%
!! TGATTGGTTCTAGTTATGAC+AGG + chr8_1:50006184-50006203 Msa1198450:CDS 35.0%
!! TTTGTTGTTGGTAAGATCAC+TGG + chr8_1:50006320-50006339 Msa1198450:intron 35.0%
GAATGCTTATATCTCTCTAG+TGG - chr8_1:50006504-50006523 None:intergenic 35.0%
! AAAGTCAACCCAAACTTTTG+AGG - chr8_1:50006618-50006637 None:intergenic 35.0%
!!! GTTTGGGTTGACTTTTGAAA+TGG + chr8_1:50006623-50006642 Msa1198450:intron 35.0%
GAAACTGTAAAAGCTCTTTG+AGG + chr8_1:50006770-50006789 Msa1198450:intron 35.0%
TCTATATAGGCCTCAAAACT+TGG - chr8_1:50006915-50006934 None:intergenic 35.0%
CATTAGGCAAATTATTAGGC+TGG - chr8_1:50007403-50007422 None:intergenic 35.0%
TACTTTATGTTAATGCCGGA+TGG - chr8_1:50007431-50007450 None:intergenic 35.0%
GCGTATAGTTAAAGATGAGA+CGG - chr8_1:50007588-50007607 None:intergenic 35.0%
TGTTAAGATCGTTGTAAAGC+AGG + chr8_1:50007646-50007665 Msa1198450:intron 35.0%
GTTAAGATCGTTGTAAAGCA+GGG + chr8_1:50007647-50007666 Msa1198450:intron 35.0%
!!! TCTATAGTGGGTTTTCACAA+TGG + chr8_1:50007676-50007695 Msa1198450:intron 35.0%
!!! CTATAGTGGGTTTTCACAAT+GGG + chr8_1:50007677-50007696 Msa1198450:intron 35.0%
! TTTTCACAATGGGAATCCAA+AGG + chr8_1:50007687-50007706 Msa1198450:intron 35.0%
TTTCACAATGGGAATCCAAA+GGG + chr8_1:50007688-50007707 Msa1198450:intron 35.0%
GCCATCAGCTAAAAAAAATC+AGG - chr8_1:50007732-50007751 None:intergenic 35.0%
ACAAAACACACATGTACAAC+AGG - chr8_1:50007780-50007799 None:intergenic 35.0%
!! TACATGTGTGTTTTGTTCAG+CGG + chr8_1:50007784-50007803 Msa1198450:intron 35.0%
GTTGGAAAACTCCAAAATCT+TGG - chr8_1:50007898-50007917 None:intergenic 35.0%
!!! GATTGGTGATTTTAACTGTC+AGG - chr8_1:50007975-50007994 None:intergenic 35.0%
!! GAACAATGAATGTTGGTGAT+TGG - chr8_1:50007992-50008011 None:intergenic 35.0%
GTTGAAGGAACAATGAATGT+TGG - chr8_1:50007999-50008018 None:intergenic 35.0%
! AAACTTCATCTTTAGGAGAG+TGG + chr8_1:50008093-50008112 Msa1198450:intron 35.0%
AAACATATTGTAAGGGGGTT+GGG + chr8_1:50008178-50008197 Msa1198450:intron 35.0%
AAGGAGTTAGTTAACGATCA+AGG + chr8_1:50008237-50008256 Msa1198450:intron 35.0%
AACATGGAGCGATAAAAACA+AGG + chr8_1:50008887-50008906 Msa1198450:CDS 35.0%
AAAAACAAGGATCGAAAGAG+TGG + chr8_1:50008900-50008919 Msa1198450:CDS 35.0%
! ACCATATGGTTGGTATTAGT+TGG + chr8_1:50009029-50009048 Msa1198450:CDS 35.0%
ACCAACTAATACCAACCATA+TGG - chr8_1:50009033-50009052 None:intergenic 35.0%
ATCGTCATAAATTGGAGAAG+TGG - chr8_1:50009103-50009122 None:intergenic 35.0%
ATTTCAAGAGGACAACCAAA+CGG - chr8_1:50009233-50009252 None:intergenic 35.0%
GATGGCTATGGGATATTTGT+CGG - chr8_1:50004000-50004019 None:intergenic 40.0%
GTAAGGAAGAAGATGGCTAT+GGG - chr8_1:50004011-50004030 None:intergenic 40.0%
TGTAAGGAAGAAGATGGCTA+TGG - chr8_1:50004012-50004031 None:intergenic 40.0%
! TTCTTCTCTCTTTTCCACCA+TGG + chr8_1:50004091-50004110 Msa1198450:exon 40.0%
ATATGTCGAGGAGTAAGGTT+AGG - chr8_1:50004133-50004152 None:intergenic 40.0%
TGAAGATATGTCGAGGAGTA+AGG - chr8_1:50004138-50004157 None:intergenic 40.0%
GAAGATAAGGAGAAGAGTGA+AGG + chr8_1:50004388-50004407 Msa1198450:CDS 40.0%
AAGAGAAGAGGATGAGAGTT+AGG + chr8_1:50004495-50004514 Msa1198450:CDS 40.0%
GAAGCCTTAAAACACTAGAG+AGG - chr8_1:50004942-50004961 None:intergenic 40.0%
! CACTCTCTCGATCTTTTTGT+TGG - chr8_1:50004974-50004993 None:intergenic 40.0%
ACCCGAGAGGAGAAAAATAA+TGG - chr8_1:50005644-50005663 None:intergenic 40.0%
!! ATTATTTTTCTCCTCTCGGG+TGG + chr8_1:50005643-50005662 Msa1198450:intron 40.0%
GTGGAGGGTGATGATTAAAT+TGG + chr8_1:50005662-50005681 Msa1198450:intron 40.0%
TGTTTGTGGTTTGACGAATC+AGG + chr8_1:50005700-50005719 Msa1198450:intron 40.0%
ATCATACATCAACTGAGCTG+TGG - chr8_1:50005753-50005772 None:intergenic 40.0%
TGCACCTTCAAGAAACTCAA+CGG - chr8_1:50005816-50005835 None:intergenic 40.0%
! GATACAAATATGGCTGGCTA+TGG + chr8_1:50005999-50006018 Msa1198450:intron 40.0%
GCAATCCTTATGGCGATTAT+TGG - chr8_1:50006034-50006053 None:intergenic 40.0%
TCTTGGGTTATCTTGAGCTT+TGG - chr8_1:50006144-50006163 None:intergenic 40.0%
CAAGATAACCCAAGAAGAGA+TGG + chr8_1:50006149-50006168 Msa1198450:CDS 40.0%
GTATAGTCACCATCTCTTCT+TGG - chr8_1:50006161-50006180 None:intergenic 40.0%
ATGGTGACTATACCCTTGAT+TGG + chr8_1:50006168-50006187 Msa1198450:CDS 40.0%
AACCCATAATAGAAAACCGC+AGG + chr8_1:50006581-50006600 Msa1198450:intron 40.0%
ACCCATAATAGAAAACCGCA+GGG + chr8_1:50006582-50006601 Msa1198450:intron 40.0%
! TCCCTGCGGTTTTCTATTAT+GGG - chr8_1:50006586-50006605 None:intergenic 40.0%
TGTCAATGTCGTGTCTATGT+CGG - chr8_1:50006813-50006832 None:intergenic 40.0%
ACGACATTGACATTCAATGC+TGG + chr8_1:50006821-50006840 Msa1198450:intron 40.0%
GTGAATGTAATCATACGCGT+TGG + chr8_1:50006868-50006887 Msa1198450:intron 40.0%
!!! ATATAGATTTTGGGGGCGTT+TGG + chr8_1:50006975-50006994 Msa1198450:intron 40.0%
TATTCTGGACTTGGGATGAA+TGG - chr8_1:50007252-50007271 None:intergenic 40.0%
TTGTAACTGCCACAGTATTC+TGG - chr8_1:50007267-50007286 None:intergenic 40.0%
TTGCCTAATGATGTTCCATC+CGG + chr8_1:50007413-50007432 Msa1198450:intron 40.0%
CACAAGTGATAGACTGATAG+TGG + chr8_1:50007486-50007505 Msa1198450:intron 40.0%
AATCCAAAGGGATTGCTCTT+AGG + chr8_1:50007700-50007719 Msa1198450:intron 40.0%
ACATGTACAACAGGCAGAAA+AGG - chr8_1:50007771-50007790 None:intergenic 40.0%
TCTAAACTCATGATGGCAGT+TGG - chr8_1:50007813-50007832 None:intergenic 40.0%
ATCACTGGGATGACATCAAA+TGG + chr8_1:50008048-50008067 Msa1198450:intron 40.0%
CAAACATATTGTAAGGGGGT+TGG + chr8_1:50008177-50008196 Msa1198450:intron 40.0%
GGTAACAAAACCAATACGGT+AGG - chr8_1:50008547-50008566 None:intergenic 40.0%
GAGACATGTTAGCAAGTAGT+CGG - chr8_1:50008630-50008649 None:intergenic 40.0%
!! ACTTTTTGGACTTGCTTGTG+TGG + chr8_1:50008958-50008977 Msa1198450:CDS 40.0%
TAGGGAAAAATCGAGCTTTC+TGG + chr8_1:50008997-50009016 Msa1198450:CDS 40.0%
AGGGAAAAATCGAGCTTTCT+GGG + chr8_1:50008998-50009017 Msa1198450:CDS 40.0%
AAAAATCGAGCTTTCTGGGT+TGG + chr8_1:50009002-50009021 Msa1198450:CDS 40.0%
TTTCAAGAGGACAACCAAAC+GGG - chr8_1:50009232-50009251 None:intergenic 40.0%
GCAGTAACGTGGAAATGTGT+AGG - chr8_1:50003973-50003992 None:intergenic 45.0%
!!! TTGTCGGTTTTGCAGTAACG+TGG - chr8_1:50003984-50004003 None:intergenic 45.0%
GTTTCCTAAGCTTACAGCCA+TGG - chr8_1:50004111-50004130 None:intergenic 45.0%
TTCGTGGTGAAGATATGTCG+AGG - chr8_1:50004145-50004164 None:intergenic 45.0%
TTGAGAGGTAACGTGAGAAG+AGG - chr8_1:50004188-50004207 None:intergenic 45.0%
GATGAAGAGTCTCTCTTGAG+AGG - chr8_1:50004203-50004222 None:intergenic 45.0%
!! TAGTTATGCTTTTGAGGGGG+AGG + chr8_1:50004250-50004269 Msa1198450:CDS 45.0%
!! AGTTATGCTTTTGAGGGGGA+GGG + chr8_1:50004251-50004270 Msa1198450:CDS 45.0%
AAGTCAAACTCGGAGCAGAA+TGG + chr8_1:50004302-50004321 Msa1198450:CDS 45.0%
! GAATGGAGTGGACTTTGACT+CGG + chr8_1:50004319-50004338 Msa1198450:CDS 45.0%
GAGAAGAGTGAAGGAGTTTG+AGG + chr8_1:50004397-50004416 Msa1198450:CDS 45.0%
TTGGAGAGTAAGGGTGATGA+TGG + chr8_1:50004455-50004474 Msa1198450:CDS 45.0%
AAGAGAGTGAGGAAGAGAAG+AGG + chr8_1:50004483-50004502 Msa1198450:CDS 45.0%
CCGAAAGCAGTTATATGGCA+GGG - chr8_1:50004855-50004874 None:intergenic 45.0%
CCCTGCCATATAACTGCTTT+CGG + chr8_1:50004852-50004871 Msa1198450:intron 45.0%
CCTGCCATATAACTGCTTTC+GGG + chr8_1:50004853-50004872 Msa1198450:intron 45.0%
CCAACGAGACATCGCTTAAT+TGG - chr8_1:50005305-50005324 None:intergenic 45.0%
CCAATTAAGCGATGTCTCGT+TGG + chr8_1:50005302-50005321 Msa1198450:intron 45.0%
TTGTGGTTTGACGAATCAGG+TGG + chr8_1:50005703-50005722 Msa1198450:intron 45.0%
TTTGACGAATCAGGTGGCTA+AGG + chr8_1:50005709-50005728 Msa1198450:intron 45.0%
GGTAAGAAAGCTTATGGGAG+AGG + chr8_1:50005776-50005795 Msa1198450:CDS 45.0%
TGAGGCCAATAATCGCCATA+AGG + chr8_1:50006026-50006045 Msa1198450:CDS 45.0%
! CTCCCTGCGGTTTTCTATTA+TGG - chr8_1:50006587-50006606 None:intergenic 45.0%
TAATAGAAAACCGCAGGGAG+TGG + chr8_1:50006587-50006606 Msa1198450:intron 45.0%
!! TGGTGCCACCTCAAAAGTTT+GGG + chr8_1:50006607-50006626 Msa1198450:intron 45.0%
!! GTCAACCCAAACTTTTGAGG+TGG - chr8_1:50006615-50006634 None:intergenic 45.0%
TAATCATACGCGTTGGACAG+CGG + chr8_1:50006875-50006894 Msa1198450:intron 45.0%
! GTCAGTGCTACCAAGTTTTG+AGG + chr8_1:50006902-50006921 Msa1198450:intron 45.0%
ATCCCAAGTCCAGAATACTG+TGG + chr8_1:50007255-50007274 Msa1198450:intron 45.0%
TGCCACAGTATTCTGGACTT+GGG - chr8_1:50007260-50007279 None:intergenic 45.0%
ATGCCGGATGGAACATCATT+AGG - chr8_1:50007419-50007438 None:intergenic 45.0%
AGCAGGGTAGAGTTCTATAG+TGG + chr8_1:50007663-50007682 Msa1198450:intron 45.0%
GCAGGGTAGAGTTCTATAGT+GGG + chr8_1:50007664-50007683 Msa1198450:intron 45.0%
TAGCCTAAGAGCAATCCCTT+TGG - chr8_1:50007706-50007725 None:intergenic 45.0%
!! ATGTGTGTTTTGTTCAGCGG+TGG + chr8_1:50007787-50007806 Msa1198450:intron 45.0%
!! GGAGAGCTCTAAACTCATGA+TGG - chr8_1:50007820-50007839 None:intergenic 45.0%
ATGGAAAAGAAGCTACGCGT+TGG - chr8_1:50007863-50007882 None:intergenic 45.0%
! TGGAGTTTTCCAACCACACT+AGG + chr8_1:50007904-50007923 Msa1198450:intron 45.0%
CAGCTTAAGAAGTGGCTTCT+AGG - chr8_1:50007932-50007951 None:intergenic 45.0%
AGAAGCCACTTCTTAAGCTG+CGG + chr8_1:50007932-50007951 Msa1198450:intron 45.0%
GTCAGGCTAATATCCCTTCA+TGG - chr8_1:50007958-50007977 None:intergenic 45.0%
!!! AATGGTTTTTTCCGCAGCTG+TGG + chr8_1:50008066-50008085 Msa1198450:intron 45.0%
!!! ATGGTTTTTTCCGCAGCTGT+GGG + chr8_1:50008067-50008086 Msa1198450:intron 45.0%
TGGGGGCAAACTTCATCTTT+AGG + chr8_1:50008086-50008105 Msa1198450:intron 45.0%
AACGATCAAGGTTCAAACGC+TGG + chr8_1:50008249-50008268 Msa1198450:intron 45.0%
TATGGTTGCTCCTACCGTAT+TGG + chr8_1:50008534-50008553 Msa1198450:intron 45.0%
TCTGTAGTTATGCGGGAACA+TGG + chr8_1:50008871-50008890 Msa1198450:intron 45.0%
! TTTTTCCCTAATCCAGCAGG+AGG - chr8_1:50008987-50009006 None:intergenic 45.0%
! CGATTTTTCCCTAATCCAGC+AGG - chr8_1:50008990-50009009 None:intergenic 45.0%
!! TCTGGGTTGGTTTGACCATA+TGG + chr8_1:50009015-50009034 Msa1198450:CDS 45.0%
!! GGTTGGTTTGACCATATGGT+TGG + chr8_1:50009019-50009038 Msa1198450:CDS 45.0%
TGGAGAAGTGGAACTCTGTA+TGG - chr8_1:50009091-50009110 None:intergenic 45.0%
TTCAAGAGGACAACCAAACG+GGG - chr8_1:50009231-50009250 None:intergenic 45.0%
TCCACCATGGCTGTAAGCTT+AGG + chr8_1:50004104-50004123 Msa1198450:exon 50.0%
TCCTAAGCTTACAGCCATGG+TGG - chr8_1:50004108-50004127 None:intergenic 50.0%
CTGTCGAGAGTTAAGCTTCG+TGG - chr8_1:50004161-50004180 None:intergenic 50.0%
!! GTTATGCTTTTGAGGGGGAG+GGG + chr8_1:50004252-50004271 Msa1198450:CDS 50.0%
AAACTCGGAGCAGAATGGAG+TGG + chr8_1:50004307-50004326 Msa1198450:CDS 50.0%
!! CTTTGACTCGGAGAGTGATG+AGG + chr8_1:50004331-50004350 Msa1198450:CDS 50.0%
AGTGATGAGGAAGGAGGGTT+AGG + chr8_1:50004344-50004363 Msa1198450:CDS 50.0%
GTGATGAGGAAGGAGGGTTA+GGG + chr8_1:50004345-50004364 Msa1198450:CDS 50.0%
TGATGAGGAAGGAGGGTTAG+GGG + chr8_1:50004346-50004365 Msa1198450:CDS 50.0%
GAGTGAAGGAGTTTGAGGAG+AGG + chr8_1:50004402-50004421 Msa1198450:CDS 50.0%
!! GAGTAAGGGTGATGATGGTG+AGG + chr8_1:50004460-50004479 Msa1198450:CDS 50.0%
! TGATGGTGAGGAAGAGAGTG+AGG + chr8_1:50004472-50004491 Msa1198450:CDS 50.0%
CCCGAAAGCAGTTATATGGC+AGG - chr8_1:50004856-50004875 None:intergenic 50.0%
! ATTTTTCTCCTCTCGGGTGG+AGG + chr8_1:50005646-50005665 Msa1198450:intron 50.0%
! TTTTTCTCCTCTCGGGTGGA+GGG + chr8_1:50005647-50005666 Msa1198450:intron 50.0%
! CGTGCCGTTGAGTTTCTTGA+AGG + chr8_1:50005809-50005828 Msa1198450:CDS 50.0%
! ATGGCTGGCTATGGCTTATG+AGG + chr8_1:50006008-50006027 Msa1198450:CDS 50.0%
!! GTGGTGCCACCTCAAAAGTT+TGG + chr8_1:50006606-50006625 Msa1198450:intron 50.0%
CTGCCACAGTATTCTGGACT+TGG - chr8_1:50007261-50007280 None:intergenic 50.0%
TTTAGCTGATGGCTGAGCAG+TGG + chr8_1:50007739-50007758 Msa1198450:intron 50.0%
! TTCTAGGAGCCTAGTGTGGT+TGG - chr8_1:50007916-50007935 None:intergenic 50.0%
TTCTTAAGCTGCGGCCATGA+AGG + chr8_1:50007941-50007960 Msa1198450:intron 50.0%
TCTTAAGCTGCGGCCATGAA+GGG + chr8_1:50007942-50007961 Msa1198450:intron 50.0%
!!! TGGTTTTTTCCGCAGCTGTG+GGG + chr8_1:50008068-50008087 Msa1198450:intron 50.0%
AGGGGGTTGGGTAGTTTAAC+TGG + chr8_1:50008190-50008209 Msa1198450:intron 50.0%
ATGTGTAGGCCAGTGACGTG+TGG - chr8_1:50003959-50003978 None:intergenic 55.0%
GGCTCGTGGGAAGTCAAACT+CGG + chr8_1:50004292-50004311 Msa1198450:CDS 55.0%
GACTCGGAGAGTGATGAGGA+AGG + chr8_1:50004335-50004354 Msa1198450:CDS 55.0%
TCGGAGAGTGATGAGGAAGG+AGG + chr8_1:50004338-50004357 Msa1198450:CDS 55.0%
CGGAGAGTGATGAGGAAGGA+GGG + chr8_1:50004339-50004358 Msa1198450:CDS 55.0%
GAATCAGGTGGCTAAGGAGC+AGG + chr8_1:50005715-50005734 Msa1198450:intron 55.0%
TAAGGAGCAGGCAGAGAGGA+GGG + chr8_1:50005727-50005746 Msa1198450:CDS 55.0%
! GCTTATGGGAGAGGCACGTA+TGG + chr8_1:50005785-50005804 Msa1198450:CDS 55.0%
! TGGCTTCTAGGAGCCTAGTG+TGG - chr8_1:50007920-50007939 None:intergenic 55.0%
CATGGCCGCAGCTTAAGAAG+TGG - chr8_1:50007940-50007959 None:intergenic 55.0%
!!! GGTTTTTTCCGCAGCTGTGG+GGG + chr8_1:50008069-50008088 Msa1198450:intron 55.0%
CAAGGTTCAAACGCTGGCGA+AGG + chr8_1:50008255-50008274 Msa1198450:intron 55.0%
TGGAGACCTCCTGCTGGATT+AGG + chr8_1:50008978-50008997 Msa1198450:CDS 55.0%
GGAGACCTCCTGCTGGATTA+GGG + chr8_1:50008979-50008998 Msa1198450:CDS 55.0%
GAGGAAGGAGGGTTAGGGGA+TGG + chr8_1:50004350-50004369 Msa1198450:CDS 60.0%
ATCATCACCCTCCACCCGAG+AGG - chr8_1:50005657-50005676 None:intergenic 60.0%
TGGCTAAGGAGCAGGCAGAG+AGG + chr8_1:50005723-50005742 Msa1198450:CDS 60.0%
CTAAGGAGCAGGCAGAGAGG+AGG + chr8_1:50005726-50005745 Msa1198450:CDS 60.0%
GAAGTTTGCCCCCACAGCTG+CGG - chr8_1:50008080-50008099 None:intergenic 60.0%
CTTGTGTGGAGACCTCCTGC+TGG + chr8_1:50008972-50008991 Msa1198450:CDS 60.0%
!! GACGAGTGGTGGTGGCTCGT+GGG + chr8_1:50004279-50004298 Msa1198450:CDS 65.0%
TGAGGTGGCACCACTCCCTG+CGG - chr8_1:50006600-50006619 None:intergenic 65.0%
!! GCTTTTGAGGGGGAGGGGCG+TGG + chr8_1:50004257-50004276 Msa1198450:CDS 70.0%
!! GGACGAGTGGTGGTGGCTCG+TGG + chr8_1:50004278-50004297 Msa1198450:CDS 70.0%
! GGAGGGGCGTGGACGAGTGG+TGG + chr8_1:50004268-50004287 Msa1198450:CDS 75.0%
GGGGCGTGGACGAGTGGTGG+TGG + chr8_1:50004271-50004290 Msa1198450:CDS 75.0%
!! GGGGGAGGGGCGTGGACGAG+TGG + chr8_1:50004265-50004284 Msa1198450:CDS 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 50003955 50009344 50003955 ID=Msa1198450;Name=Msa1198450
chr8_1 mRNA 50003955 50009344 50003955 ID=Msa1198450-mRNA-1;Parent=Msa1198450;Name=Msa1198450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=155|1|1|1|1|1|4|268|326
chr8_1 exon 50003955 50004532 50003955 ID=Msa1198450-mRNA-1:exon:15678;Parent=Msa1198450-mRNA-1
chr8_1 exon 50005722 50005874 50005722 ID=Msa1198450-mRNA-1:exon:15679;Parent=Msa1198450-mRNA-1
chr8_1 exon 50006000 50006205 50006000 ID=Msa1198450-mRNA-1:exon:15680;Parent=Msa1198450-mRNA-1
chr8_1 exon 50008878 50009344 50008878 ID=Msa1198450-mRNA-1:exon:15681;Parent=Msa1198450-mRNA-1
chr8_1 five_prime_UTR 50003955 50004109 50003955 ID=Msa1198450-mRNA-1:five_prime_utr;Parent=Msa1198450-mRNA-1
chr8_1 CDS 50004110 50004532 50004110 ID=Msa1198450-mRNA-1:cds;Parent=Msa1198450-mRNA-1
chr8_1 CDS 50005722 50005874 50005722 ID=Msa1198450-mRNA-1:cds;Parent=Msa1198450-mRNA-1
chr8_1 CDS 50006000 50006205 50006000 ID=Msa1198450-mRNA-1:cds;Parent=Msa1198450-mRNA-1
chr8_1 CDS 50008878 50009076 50008878 ID=Msa1198450-mRNA-1:cds;Parent=Msa1198450-mRNA-1
chr8_1 three_prime_UTR 50009077 50009344 50009077 ID=Msa1198450-mRNA-1:three_prime_utr;Parent=Msa1198450-mRNA-1
Gene Sequence

>Msa1198450

ATGGCTGTAAGCTTAGGAAACCTAACCTTACTCCTCGACATATCTTCACCACGAAGCTTAACTCTCGACAGAAAACCTCTTCTCACGTTACCTCTCAAGAGAGACTCTTCATCTTCTTCAACTTCATCTTCTTGCTGTTGTAGTTATGCTTTTGAGGGGGAGGGGCGTGGACGAGTGGTGGTGGCTCGTGGGAAGTCAAACTCGGAGCAGAATGGAGTGGACTTTGACTCGGAGAGTGATGAGGAAGGAGGGTTAGGGGATGGAGATGATTTTGAAACGAAGATAAGGAGAAGAGTGAAGGAGTTTGAGGAGAGGAGAGAGCTTGAGAAGAAAGCTGAAGAGTATTTGGAGAGTAAGGGTGATGATGGTGAGGAAGAGAGTGAGGAAGAGAAGAGGATGAGAGTTAGGAAAGAGCTTGAAAAGGTGGCTAAGGAGCAGGCAGAGAGGAGGGCCACAGCTCAGTTGATGTATGATTTGGGTAAGAAAGCTTATGGGAGAGGCACGTATGGACGTGCCGTTGAGTTTCTTGAAGGTGCACTCACCATCATACCAAGATCTACATTATTTGGTGGTGAGATACAAATATGGCTGGCTATGGCTTATGAGGCCAATAATCGCCATAAGGATTGCATTGCTCTTTACAAGCAATTAGAAAAGTCGCACCCTAGTATTAGCATCAAACGTCAAGCTGCAGAACTTCGTTACATTTTGGAAGCACCAAAGCTCAAGATAACCCAAGAAGAGATGGTGACTATACCCTTGATTGGTTCTAGTTATGACAGTTATGCGGGAACATGGAGCGATAAAAACAAGGATCGAAAGAGTGGAACAGTCAACAGTCCATTTCCATCATCTAAAGATAACTTTTTGGACTTGCTTGTGTGGAGACCTCCTGCTGGATTAGGGAAAAATCGAGCTTTCTGGGTTGGTTTGACCATATGGTTGGTATTAGTTGGTGCTGCTCTCTACATTCAAAGATGA

Protein sequence

>Msa1198450

MAVSLGNLTLLLDISSPRSLTLDRKPLLTLPLKRDSSSSSTSSSCCCSYAFEGEGRGRVVVARGKSNSEQNGVDFDSESDEEGGLGDGDDFETKIRRRVKEFEERRELEKKAEEYLESKGDDGEEESEEEKRMRVRKELEKVAKEQAERRATAQLMYDLGKKAYGRGTYGRAVEFLEGALTIIPRSTLFGGEIQIWLAMAYEANNRHKDCIALYKQLEKSHPSISIKRQAAELRYILEAPKLKITQEEMVTIPLIGSSYDSYAGTWSDKNKDRKSGTVNSPFPSSKDNFLDLLVWRPPAGLGKNRAFWVGLTIWLVLVGAALYIQR*