Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616610 | XP_013442072.1 | 97.391 | 230 | 6 | 0 | 1 | 230 | 1 | 230 | 7.78e-163 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0047470 | Msa0616610 | 0.812709 | 3.699367e-51 | -8.615850e-47 |
| Msa0100250 | Msa0616610 | 0.803819 | 2.906062e-49 | -8.615850e-47 |
| Msa0610280 | Msa0616610 | 0.822954 | 1.796286e-53 | -8.615850e-47 |
| Msa0616610 | Msa0616710 | 0.977913 | 9.687860e-145 | -8.615850e-47 |
| Msa0616610 | Msa0698900 | 0.811831 | 5.750895e-51 | -8.615850e-47 |
| Msa0616610 | Msa0703460 | 0.820434 | 6.872399e-53 | -8.615850e-47 |
| Msa0616610 | Msa0714340 | 0.805719 | 1.165593e-49 | -8.615850e-47 |
| Msa0616610 | Msa0714380 | 0.809455 | 1.875872e-50 | -8.615850e-47 |
| Msa0616610 | Msa0812660 | 0.816874 | 4.416376e-52 | -8.615850e-47 |
| Msa0616610 | Msa0818440 | 0.827413 | 1.586334e-54 | -8.615850e-47 |
| Msa0616610 | Msa0818550 | 0.802538 | 5.349593e-49 | -8.615850e-47 |
| Msa0616610 | Msa0850740 | 0.809226 | 2.101163e-50 | -8.615850e-47 |
| Msa0616610 | Msa0858910 | 0.804675 | 1.928127e-49 | -8.615850e-47 |
| Msa0616610 | Msa0971860 | 0.802614 | 5.160120e-49 | -8.615850e-47 |
| Msa0616610 | Msa1198450 | 0.835228 | 1.896247e-56 | -8.615850e-47 |
| Msa0616610 | Msa1220740 | 0.814933 | 1.196944e-51 | -8.615850e-47 |
| Msa0616610 | Msa1334650 | 0.801799 | 7.591728e-49 | -8.615850e-47 |
| Msa0534420 | Msa0616610 | 0.809371 | 1.956140e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616610 | MtrunA17_Chr8g0376221 | 97.391 | 230 | 6 | 0 | 1 | 230 | 1 | 230 | 7.15e-167 | 459 |
| Msa0616610 | MtrunA17_Chr8g0376261 | 96.721 | 122 | 4 | 0 | 1 | 122 | 1 | 122 | 1.47e-83 | 245 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616610 | AT1G20225.1 | 53.883 | 206 | 95 | 0 | 24 | 229 | 23 | 228 | 1.93e-80 | 241 |
| Msa0616610 | AT1G76020.1 | 55.708 | 219 | 95 | 1 | 6 | 222 | 2 | 220 | 1.32e-79 | 238 |
| Msa0616610 | AT1G76020.3 | 55.556 | 171 | 74 | 1 | 6 | 174 | 2 | 172 | 1.60e-58 | 183 |
| Msa0616610 | AT1G76020.2 | 55.147 | 136 | 61 | 0 | 87 | 222 | 40 | 175 | 6.79e-49 | 159 |
Find 72 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGATTACAAGAACAATTT+TGG | 0.122280 | 4_2:-66518181 | None:intergenic |
| AGATTCCATTATTGCATTCT+TGG | 0.191845 | 4_2:-66521032 | None:intergenic |
| CATTAATGGCCCAGATTTAA+TGG | 0.221055 | 4_2:+66520962 | Msa0616610:intron |
| TAATGGTACGGTGCCATTAA+TGG | 0.270396 | 4_2:+66520979 | Msa0616610:three_prime_UTR |
| CTTTAACAGGCGGCATTCTT+TGG | 0.273544 | 4_2:+66520215 | Msa0616610:intron |
| TAGCACTTTGGTGTCATTAA+TGG | 0.275070 | 4_2:+66520863 | Msa0616610:three_prime_UTR |
| TAGCACTTTGGTGCCATTAA+TGG | 0.275309 | 4_2:-66520992 | None:intergenic |
| TTAATGGAAAGTATTTAATT+TGG | 0.288088 | 4_2:+66517994 | None:intergenic |
| TTTGTTTGTTTCTAGTTTCT+AGG | 0.312416 | 4_2:+66518031 | Msa0616610:five_prime_UTR |
| GCCCTGACAGCGCTGATTCA+TGG | 0.321870 | 4_2:+66518492 | Msa0616610:CDS |
| AGAGGCATTCTTCAAGTATC+AGG | 0.343425 | 4_2:+66518885 | Msa0616610:CDS |
| GGCCATGAATCAGCGCTGTC+AGG | 0.354911 | 4_2:-66518494 | None:intergenic |
| TCTAATCAATCAGTTATATA+CGG | 0.369646 | 4_2:-66518243 | None:intergenic |
| AACATTATTGACCCATTGAT+TGG | 0.376408 | 4_2:+66520695 | Msa0616610:CDS |
| CACTGTATCTGCTGATCAAT+AGG | 0.385510 | 4_2:+66520828 | Msa0616610:three_prime_UTR |
| CAAAGAGGGTTAGAGATGTC+AGG | 0.401495 | 4_2:+66518314 | Msa0616610:exon |
| TTGTACCAAGAATGCAATAA+TGG | 0.409468 | 4_2:+66521027 | Msa0616610:three_prime_UTR |
| TCAGCGCTGTCAGGGCATAA+AGG | 0.428310 | 4_2:-66518485 | None:intergenic |
| CTTGCTTGCGTTGCAGTCGC+TGG | 0.428343 | 4_2:+66518361 | Msa0616610:CDS |
| AAGCTCTTAACTACAGTGAT+TGG | 0.441598 | 4_2:+66520669 | Msa0616610:CDS |
| TATCATACTTCTATCAAGAA+TGG | 0.446875 | 4_2:+66520317 | Msa0616610:CDS |
| TCTTACCTTAAAAGAAATCC+TGG | 0.448490 | 4_2:-66520369 | None:intergenic |
| GCTGCTTCAAGAGGAGTGTC+TGG | 0.461731 | 4_2:+66520599 | Msa0616610:CDS |
| TTGTTGTATTAGCATTTCTT+CGG | 0.479583 | 4_2:+66520791 | Msa0616610:three_prime_UTR |
| TGAAGAATGCCTCTAGCAAT+GGG | 0.483868 | 4_2:-66518876 | None:intergenic |
| CCTTAAAAGAAATCCTGGTC+AGG | 0.485521 | 4_2:-66520364 | None:intergenic |
| ACGAATCCGTCGTATTTCTT+CGG | 0.491616 | 4_2:-66518404 | None:intergenic |
| CTGATCAATAGGTGTTTGTA+CGG | 0.492221 | 4_2:+66520839 | Msa0616610:three_prime_UTR |
| CATTAGATAATTAATGTATC+CGG | 0.494527 | 4_2:+66518125 | Msa0616610:five_prime_UTR |
| TTCTTGGTACAAACACGGGT+GGG | 0.496284 | 4_2:-66521016 | None:intergenic |
| GGATTCGTGTTGCCCGATGC+AGG | 0.498005 | 4_2:+66520644 | Msa0616610:CDS |
| TTGAAGAATGCCTCTAGCAA+TGG | 0.503848 | 4_2:-66518877 | None:intergenic |
| TTTGTGTGGCCCAGATTTAA+CGG | 0.509027 | 4_2:-66520893 | None:intergenic |
| ATCCGTCGTATTTCTTCGGT+GGG | 0.511988 | 4_2:-66518400 | None:intergenic |
| GATTAGAGAACGAACGGTAG+AGG | 0.514766 | 4_2:-66518578 | None:intergenic |
| TGCATTCTTGGTACAAACAC+GGG | 0.515896 | 4_2:-66521020 | None:intergenic |
| CTTGCGTTGCAGTCGCTGGT+CGG | 0.515983 | 4_2:+66518365 | Msa0616610:CDS |
| CTCTTAACTACAGTGATTGG+AGG | 0.528317 | 4_2:+66520672 | Msa0616610:CDS |
| AATCCGTCGTATTTCTTCGG+TGG | 0.534773 | 4_2:-66518401 | None:intergenic |
| ACACGGGTGGGGTAGCACTT+TGG | 0.536701 | 4_2:-66521004 | None:intergenic |
| GCTCTAGATAAGTTCCGCGT+TGG | 0.547951 | 4_2:-66520242 | None:intergenic |
| CTAACTCCGACCACCTGACC+AGG | 0.550513 | 4_2:+66520351 | Msa0616610:CDS |
| GCGGAGAGACAAGGCAAAGA+GGG | 0.557936 | 4_2:+66518300 | Msa0616610:five_prime_UTR |
| GCCATGAATCAGCGCTGTCA+GGG | 0.560993 | 4_2:-66518493 | None:intergenic |
| AGTTTACCTCAGCTACAGTT+GGG | 0.567465 | 4_2:+66520288 | Msa0616610:CDS |
| AAGTTTACCTCAGCTACAGT+TGG | 0.568593 | 4_2:+66520287 | Msa0616610:CDS |
| AAAGAGGGTTAGAGATGTCA+GGG | 0.570918 | 4_2:+66518315 | Msa0616610:exon |
| TGTTTGTACGGGTAGCACTT+TGG | 0.573231 | 4_2:+66520851 | Msa0616610:three_prime_UTR |
| ATAAGTGCTATAATTATGAC+CGG | 0.577459 | 4_2:-66518144 | None:intergenic |
| TCTTGGTACAAACACGGGTG+GGG | 0.577477 | 4_2:-66521015 | None:intergenic |
| CTGCAGTATGCTGCTTCAAG+AGG | 0.577685 | 4_2:+66520590 | Msa0616610:intron |
| AGAGAACGAACGGTAGAGGA+AGG | 0.579079 | 4_2:-66518574 | None:intergenic |
| TATTGTATTGCGGAGAGACA+AGG | 0.586581 | 4_2:+66518291 | Msa0616610:five_prime_UTR |
| TTGCATTCTTGGTACAAACA+CGG | 0.589423 | 4_2:-66521021 | None:intergenic |
| AGAAATCCTGGTCAGGTGGT+CGG | 0.601600 | 4_2:-66520357 | None:intergenic |
| GCGTTGCAGTCGCTGGTCGG+AGG | 0.605051 | 4_2:+66518368 | Msa0616610:CDS |
| TGCTACATTCCCATTGCTAG+AGG | 0.605297 | 4_2:+66518867 | Msa0616610:CDS |
| ATGGCCCAGATTTAATGGTA+CGG | 0.613847 | 4_2:+66520967 | Msa0616610:intron |
| ATTCTTGGTACAAACACGGG+TGG | 0.617439 | 4_2:-66521017 | None:intergenic |
| ACGCAACGAAAGCATTGTCA+TGG | 0.627698 | 4_2:-66518807 | None:intergenic |
| TGATCAATAGGTGTTTGTAC+GGG | 0.633892 | 4_2:+66520840 | Msa0616610:three_prime_UTR |
| GGGTTAGAGATGTCAGGGAA+CGG | 0.638574 | 4_2:+66518320 | Msa0616610:exon |
| TGCGGAGAGACAAGGCAAAG+AGG | 0.639915 | 4_2:+66518299 | Msa0616610:five_prime_UTR |
| AGAGTTCCCAACTGTAGCTG+AGG | 0.641687 | 4_2:-66520294 | None:intergenic |
| AAGATACTGATATTGTATTG+CGG | 0.642473 | 4_2:+66518281 | Msa0616610:five_prime_UTR |
| TAAAAGAAATCCTGGTCAGG+TGG | 0.643649 | 4_2:-66520361 | None:intergenic |
| AACAACGAGGGAAACACGAG+AGG | 0.659397 | 4_2:-66518546 | None:intergenic |
| GTGGCCCAGATTTAACGGCA+CGG | 0.666964 | 4_2:-66520888 | None:intergenic |
| CATTCTTTGGTGCTCCAACG+CGG | 0.671653 | 4_2:+66520228 | Msa0616610:CDS |
| AGGAAGGAGATGAACAACGA+GGG | 0.716920 | 4_2:-66518558 | None:intergenic |
| ATCCCACCGAAGAAATACGA+CGG | 0.719573 | 4_2:+66518398 | Msa0616610:CDS |
| GAGGAAGGAGATGAACAACG+AGG | 0.779581 | 4_2:-66518559 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTCAATTATGTAT+TGG | + | chr4_2:66518923-66518942 | Msa0616610:intron | 10.0% |
| !! | AAAAAAAAAAAAGATAAACT+CGG | - | chr4_2:66519191-66519210 | None:intergenic | 10.0% |
| !!! | TTTCATAATTGAATTGTTTT+CGG | + | chr4_2:66518741-66518760 | Msa0616610:intron | 15.0% |
| !!! | ATGAATTTTTCTTCATATTT+TGG | + | chr4_2:66518772-66518791 | Msa0616610:intron | 15.0% |
| !! | AAAAAAAAAAAGATAAACTC+GGG | - | chr4_2:66519190-66519209 | None:intergenic | 15.0% |
| !!! | GATATGAAAAATAGTAATTT+TGG | - | chr4_2:66520471-66520490 | None:intergenic | 15.0% |
| !! | CATTAGATAATTAATGTATC+CGG | + | chr4_2:66518125-66518144 | Msa0616610:five_prime_UTR | 20.0% |
| !! | TCTAATCAATCAGTTATATA+CGG | - | chr4_2:66518246-66518265 | None:intergenic | 20.0% |
| !! | TAAAAGTTACTAAAAGTGAA+GGG | - | chr4_2:66518603-66518622 | None:intergenic | 20.0% |
| !! | TTAAAAGTTACTAAAAGTGA+AGG | - | chr4_2:66518604-66518623 | None:intergenic | 20.0% |
| !!! | ATTTTCAATTATGTATTGGT+TGG | + | chr4_2:66518927-66518946 | Msa0616610:intron | 20.0% |
| !!! | GTACTTTTAATTTTAAGCTT+AGG | + | chr4_2:66519115-66519134 | Msa0616610:intron | 20.0% |
| !!! | TAACTTTTCTAATAGAAAGA+AGG | - | chr4_2:66520160-66520179 | None:intergenic | 20.0% |
| !! | TTCTATTAGAAAAGTTATTG+TGG | + | chr4_2:66520163-66520182 | Msa0616610:intron | 20.0% |
| !!! | AGAAAAAAGTATTTCTTGAA+AGG | - | chr4_2:66520540-66520559 | None:intergenic | 20.0% |
| !!! | TTTGTTTGTTTCTAGTTTCT+AGG | + | chr4_2:66518031-66518050 | Msa0616610:five_prime_UTR | 25.0% |
| ! | ATAAGTGCTATAATTATGAC+CGG | - | chr4_2:66518147-66518166 | None:intergenic | 25.0% |
| !! | ACTGATTACAAGAACAATTT+TGG | - | chr4_2:66518184-66518203 | None:intergenic | 25.0% |
| ! | AAGATACTGATATTGTATTG+CGG | + | chr4_2:66518281-66518300 | Msa0616610:five_prime_UTR | 25.0% |
| ! | CACAACATTTAAACTATTGA+GGG | - | chr4_2:66519299-66519318 | None:intergenic | 25.0% |
| !! | TTGCATTGATATAATAACAG+GGG | - | chr4_2:66519428-66519447 | None:intergenic | 25.0% |
| !! | CTTGCATTGATATAATAACA+GGG | - | chr4_2:66519429-66519448 | None:intergenic | 25.0% |
| !! | TCTTGCATTGATATAATAAC+AGG | - | chr4_2:66519430-66519449 | None:intergenic | 25.0% |
| ! | TCAATCACAATGTGATTAAA+AGG | - | chr4_2:66519539-66519558 | None:intergenic | 25.0% |
| ! | TAAACATGAATGTCTAGATT+TGG | - | chr4_2:66519623-66519642 | None:intergenic | 25.0% |
| ! | ATATGTTCCAACAATTTGAA+TGG | - | chr4_2:66519662-66519681 | None:intergenic | 25.0% |
| ! | TATTCATAACAGGTATGATA+TGG | - | chr4_2:66519733-66519752 | None:intergenic | 25.0% |
| ! | ATACCTGTTATGAATATTGA+AGG | + | chr4_2:66519737-66519756 | Msa0616610:intron | 25.0% |
| ! | TTTCCTTCAATATTCATAAC+AGG | - | chr4_2:66519743-66519762 | None:intergenic | 25.0% |
| ! | AATATTGAAGGAAAACAACA+TGG | + | chr4_2:66519749-66519768 | Msa0616610:intron | 25.0% |
| ! | TTTGAATGCAAATCTTTCTT+GGG | + | chr4_2:66519871-66519890 | Msa0616610:intron | 25.0% |
| ! | AATTTATGCACATTCGAATT+TGG | + | chr4_2:66519903-66519922 | Msa0616610:intron | 25.0% |
| ! | TGTGTCTTTGATATTTGAAA+AGG | + | chr4_2:66519930-66519949 | Msa0616610:intron | 25.0% |
| ! | AAGGGTTAATATTACACATA+AGG | - | chr4_2:66519968-66519987 | None:intergenic | 25.0% |
| !! | AATCCTATTTTGCTACAAAT+TGG | - | chr4_2:66519997-66520016 | None:intergenic | 25.0% |
| ! | TATCATACTTCTATCAAGAA+TGG | + | chr4_2:66520317-66520336 | Msa0616610:CDS | 25.0% |
| ! | TTCGTGTACTAGAATATAAT+TGG | + | chr4_2:66520428-66520447 | Msa0616610:intron | 25.0% |
| !!! | AAAAGTATTTCTTGAAAGGA+GGG | - | chr4_2:66520536-66520555 | None:intergenic | 25.0% |
| !!! | AAAAAGTATTTCTTGAAAGG+AGG | - | chr4_2:66520537-66520556 | None:intergenic | 25.0% |
| ! | AATCCATTGACATAGAAAAA+AGG | - | chr4_2:66520629-66520648 | None:intergenic | 25.0% |
| !! | TTTTTACAACAAGTAGTGAA+GGG | - | chr4_2:66520750-66520769 | None:intergenic | 25.0% |
| !! | ATTTTTACAACAAGTAGTGA+AGG | - | chr4_2:66520751-66520770 | None:intergenic | 25.0% |
| !!! | CTACTTGTTGTAAAAATTGT+AGG | + | chr4_2:66520754-66520773 | Msa0616610:exon | 25.0% |
| ! | TTGTTGTATTAGCATTTCTT+CGG | + | chr4_2:66520791-66520810 | Msa0616610:three_prime_UTR | 25.0% |
| !! | CTATGTTTGGCTTTAAATCT+TGG | + | chr4_2:66518955-66518974 | Msa0616610:intron | 30.0% |
| !!! | AGCTTTTTTGAAACAGTCTA+CGG | - | chr4_2:66519009-66519028 | None:intergenic | 30.0% |
| !! | AAGCTGTTTTCAAATTTGCA+TGG | + | chr4_2:66519024-66519043 | Msa0616610:intron | 30.0% |
| !! | AGCTGTTTTCAAATTTGCAT+GGG | + | chr4_2:66519025-66519044 | Msa0616610:intron | 30.0% |
| GTACTACAAAACAAACAATG+AGG | - | chr4_2:66519099-66519118 | None:intergenic | 30.0% | |
| TCCATTCGGTTAAGATATTT+CGG | + | chr4_2:66519143-66519162 | Msa0616610:intron | 30.0% | |
| ACATTTAAACTATTGAGGGA+TGG | - | chr4_2:66519295-66519314 | None:intergenic | 30.0% | |
| CCACAACATTTAAACTATTG+AGG | - | chr4_2:66519300-66519319 | None:intergenic | 30.0% | |
| CCTCAATAGTTTAAATGTTG+TGG | + | chr4_2:66519297-66519316 | Msa0616610:intron | 30.0% | |
| TTAAATGTTGTGGCAATTCT+AGG | + | chr4_2:66519307-66519326 | Msa0616610:intron | 30.0% | |
| TAAATGTTGTGGCAATTCTA+GGG | + | chr4_2:66519308-66519327 | Msa0616610:intron | 30.0% | |
| TATCAATGCAAGAAAGAACA+TGG | + | chr4_2:66519437-66519456 | Msa0616610:intron | 30.0% | |
| !!! | TTTTCATTCCCTTTGTTTTC+TGG | + | chr4_2:66519483-66519502 | Msa0616610:intron | 30.0% |
| ! | AACTTTTCATTATGTGAACC+CGG | - | chr4_2:66519594-66519613 | None:intergenic | 30.0% |
| TTGTCAACCATTCAAATTGT+TGG | + | chr4_2:66519652-66519671 | Msa0616610:intron | 30.0% | |
| AATGTGAACAATTGAGACAT+AGG | - | chr4_2:66519794-66519813 | None:intergenic | 30.0% | |
| CTTTGAATGCAAATCTTTCT+TGG | + | chr4_2:66519870-66519889 | Msa0616610:intron | 30.0% | |
| TTGAATGCAAATCTTTCTTG+GGG | + | chr4_2:66519872-66519891 | Msa0616610:intron | 30.0% | |
| GCTACAAATTGGCTATAAAA+GGG | - | chr4_2:66519986-66520005 | None:intergenic | 30.0% | |
| TGCTACAAATTGGCTATAAA+AGG | - | chr4_2:66519987-66520006 | None:intergenic | 30.0% | |
| TAGCCAATTTGTAGCAAAAT+AGG | + | chr4_2:66519991-66520010 | Msa0616610:intron | 30.0% | |
| TCTTACCTTAAAAGAAATCC+TGG | - | chr4_2:66520372-66520391 | None:intergenic | 30.0% | |
| TTTCCGTGTCTTAAATCAAA+GGG | - | chr4_2:66520498-66520517 | None:intergenic | 30.0% | |
| ! | TTTTCCGTGTCTTAAATCAA+AGG | - | chr4_2:66520499-66520518 | None:intergenic | 30.0% |
| AACATTATTGACCCATTGAT+TGG | + | chr4_2:66520695-66520714 | Msa0616610:CDS | 30.0% | |
| ! | TTTTCTTCACACCAATCAAT+GGG | - | chr4_2:66520709-66520728 | None:intergenic | 30.0% |
| TTGTACCAAGAATGCAATAA+TGG | + | chr4_2:66521027-66521046 | Msa0616610:three_prime_UTR | 30.0% | |
| AGATTCCATTATTGCATTCT+TGG | - | chr4_2:66521035-66521054 | None:intergenic | 30.0% | |
| !!! | TGATGAAGAGCTTTTTTGAG+AGG | - | chr4_2:66518521-66518540 | None:intergenic | 35.0% |
| TTGGTTGGATATGCTATGTT+TGG | + | chr4_2:66518942-66518961 | Msa0616610:intron | 35.0% | |
| AAATTTGCATGGGACTTTCA+AGG | + | chr4_2:66519035-66519054 | Msa0616610:intron | 35.0% | |
| TCCGAAATATCTTAACCGAA+TGG | - | chr4_2:66519147-66519166 | None:intergenic | 35.0% | |
| ! | ATTAGTTTCCAAGTTGCACA+TGG | - | chr4_2:66519247-66519266 | None:intergenic | 35.0% |
| TATATGATCCTACTCGACAT+GGG | - | chr4_2:66519270-66519289 | None:intergenic | 35.0% | |
| TTATATGATCCTACTCGACA+TGG | - | chr4_2:66519271-66519290 | None:intergenic | 35.0% | |
| ! | TGACACATATTTCTGCACAA+TGG | - | chr4_2:66519703-66519722 | None:intergenic | 35.0% |
| !! | TAGCAAAATAGGATTAGCCA+TGG | + | chr4_2:66520002-66520021 | Msa0616610:intron | 35.0% |
| !! | AAATAGGATTAGCCATGGAA+CGG | + | chr4_2:66520007-66520026 | Msa0616610:intron | 35.0% |
| ATACACTAGATTTAGTGAGC+AGG | - | chr4_2:66520192-66520211 | None:intergenic | 35.0% | |
| TCTAGTGTATACCCTTTAAC+AGG | + | chr4_2:66520202-66520221 | Msa0616610:intron | 35.0% | |
| ACTGCAGATCGAAGAAAATT+AGG | - | chr4_2:66520577-66520596 | None:intergenic | 35.0% | |
| !!! | ACGCCTTTTTTCTATGTCAA+TGG | + | chr4_2:66520623-66520642 | Msa0616610:CDS | 35.0% |
| AAGCTCTTAACTACAGTGAT+TGG | + | chr4_2:66520669-66520688 | Msa0616610:CDS | 35.0% | |
| ! | CTTTTCTTCACACCAATCAA+TGG | - | chr4_2:66520710-66520729 | None:intergenic | 35.0% |
| CTGATCAATAGGTGTTTGTA+CGG | + | chr4_2:66520839-66520858 | Msa0616610:three_prime_UTR | 35.0% | |
| TGATCAATAGGTGTTTGTAC+GGG | + | chr4_2:66520840-66520859 | Msa0616610:three_prime_UTR | 35.0% | |
| !! | TAGCACTTTGGTGTCATTAA+TGG | + | chr4_2:66520863-66520882 | Msa0616610:three_prime_UTR | 35.0% |
| AAACACATTCTCATTGCATC+TGG | + | chr4_2:66520913-66520932 | Msa0616610:intron | 35.0% | |
| AACACATTCTCATTGCATCT+GGG | + | chr4_2:66520914-66520933 | Msa0616610:intron | 35.0% | |
| !! | ATCTATCTTGGTGCCATTAA+TGG | + | chr4_2:66520948-66520967 | Msa0616610:intron | 35.0% |
| CATTAAATCTGGGCCATTAA+TGG | - | chr4_2:66520964-66520983 | None:intergenic | 35.0% | |
| CATTAATGGCCCAGATTTAA+TGG | + | chr4_2:66520962-66520981 | Msa0616610:intron | 35.0% | |
| TTGCATTCTTGGTACAAACA+CGG | - | chr4_2:66521024-66521043 | None:intergenic | 35.0% | |
| TATTGTATTGCGGAGAGACA+AGG | + | chr4_2:66518291-66518310 | Msa0616610:five_prime_UTR | 40.0% | |
| AAAGAGGGTTAGAGATGTCA+GGG | + | chr4_2:66518315-66518334 | Msa0616610:exon | 40.0% | |
| ACGAATCCGTCGTATTTCTT+CGG | - | chr4_2:66518407-66518426 | None:intergenic | 40.0% | |
| !!! | TGAAGAGCTTTTTTGAGAGG+TGG | - | chr4_2:66518518-66518537 | None:intergenic | 40.0% |
| TGAAGGGATTAGAGAACGAA+CGG | - | chr4_2:66518587-66518606 | None:intergenic | 40.0% | |
| CTGTTTCATAAGCACATGAG+AGG | + | chr4_2:66518628-66518647 | Msa0616610:intron | 40.0% | |
| TGAAGAATGCCTCTAGCAAT+GGG | - | chr4_2:66518879-66518898 | None:intergenic | 40.0% | |
| TTGAAGAATGCCTCTAGCAA+TGG | - | chr4_2:66518880-66518899 | None:intergenic | 40.0% | |
| !! | AGAGGCATTCTTCAAGTATC+AGG | + | chr4_2:66518885-66518904 | Msa0616610:CDS | 40.0% |
| GCATTCTTCAAGTATCAGGT+TGG | + | chr4_2:66518889-66518908 | Msa0616610:intron | 40.0% | |
| GAGTATTTCCATGTGCAACT+TGG | + | chr4_2:66519236-66519255 | Msa0616610:intron | 40.0% | |
| AAACTAATCCCATGTCGAGT+AGG | + | chr4_2:66519259-66519278 | Msa0616610:intron | 40.0% | |
| TCTTTCATGCACAGACTACA+CGG | + | chr4_2:66519341-66519360 | Msa0616610:intron | 40.0% | |
| CATGCACACCAGAAAACAAA+GGG | - | chr4_2:66519494-66519513 | None:intergenic | 40.0% | |
| ACATGCACACCAGAAAACAA+AGG | - | chr4_2:66519495-66519514 | None:intergenic | 40.0% | |
| AGTGTATACCCTTTAACAGG+CGG | + | chr4_2:66520205-66520224 | Msa0616610:intron | 40.0% | |
| AAAGAATGCCGCCTGTTAAA+GGG | - | chr4_2:66520216-66520235 | None:intergenic | 40.0% | |
| AAGTTTACCTCAGCTACAGT+TGG | + | chr4_2:66520287-66520306 | Msa0616610:CDS | 40.0% | |
| AGTTTACCTCAGCTACAGTT+GGG | + | chr4_2:66520288-66520307 | Msa0616610:CDS | 40.0% | |
| TAAAAGAAATCCTGGTCAGG+TGG | - | chr4_2:66520364-66520383 | None:intergenic | 40.0% | |
| CCTTAAAAGAAATCCTGGTC+AGG | - | chr4_2:66520367-66520386 | None:intergenic | 40.0% | |
| ! | CCTGACCAGGATTTCTTTTA+AGG | + | chr4_2:66520364-66520383 | Msa0616610:CDS | 40.0% |
| ! | CAGCCCTTTGATTTAAGACA+CGG | + | chr4_2:66520492-66520511 | Msa0616610:intron | 40.0% |
| ! | TTAAGAGCTTTTCCTGCATC+GGG | - | chr4_2:66520659-66520678 | None:intergenic | 40.0% |
| ! | GTTAAGAGCTTTTCCTGCAT+CGG | - | chr4_2:66520660-66520679 | None:intergenic | 40.0% |
| CTCTTAACTACAGTGATTGG+AGG | + | chr4_2:66520672-66520691 | Msa0616610:CDS | 40.0% | |
| CACTGTATCTGCTGATCAAT+AGG | + | chr4_2:66520828-66520847 | Msa0616610:three_prime_UTR | 40.0% | |
| TTTGTGTGGCCCAGATTTAA+CGG | - | chr4_2:66520896-66520915 | None:intergenic | 40.0% | |
| GCAATGAGAATGTGTTTGTG+TGG | - | chr4_2:66520910-66520929 | None:intergenic | 40.0% | |
| ACCAAGATAGATGTGTTGTG+TGG | - | chr4_2:66520940-66520959 | None:intergenic | 40.0% | |
| ATGGCCCAGATTTAATGGTA+CGG | + | chr4_2:66520967-66520986 | Msa0616610:intron | 40.0% | |
| !! | TAATGGTACGGTGCCATTAA+TGG | + | chr4_2:66520979-66520998 | Msa0616610:three_prime_UTR | 40.0% |
| !! | TAGCACTTTGGTGCCATTAA+TGG | - | chr4_2:66520995-66521014 | None:intergenic | 40.0% |
| TGCATTCTTGGTACAAACAC+GGG | - | chr4_2:66521023-66521042 | None:intergenic | 40.0% | |
| CAAAGAGGGTTAGAGATGTC+AGG | + | chr4_2:66518314-66518333 | Msa0616610:exon | 45.0% | |
| ATCCCACCGAAGAAATACGA+CGG | + | chr4_2:66518398-66518417 | Msa0616610:CDS | 45.0% | |
| ATCCGTCGTATTTCTTCGGT+GGG | - | chr4_2:66518403-66518422 | None:intergenic | 45.0% | |
| AATCCGTCGTATTTCTTCGG+TGG | - | chr4_2:66518404-66518423 | None:intergenic | 45.0% | |
| AGGAAGGAGATGAACAACGA+GGG | - | chr4_2:66518561-66518580 | None:intergenic | 45.0% | |
| GATTAGAGAACGAACGGTAG+AGG | - | chr4_2:66518581-66518600 | None:intergenic | 45.0% | |
| !! | ACGCAACGAAAGCATTGTCA+TGG | - | chr4_2:66518810-66518829 | None:intergenic | 45.0% |
| TGCTACATTCCCATTGCTAG+AGG | + | chr4_2:66518867-66518886 | Msa0616610:CDS | 45.0% | |
| ! | CTTGGTTCTCTGAGTGACTT+TGG | + | chr4_2:66518973-66518992 | Msa0616610:intron | 45.0% |
| CTCTGAGTGACTTTGGATGT+TGG | + | chr4_2:66518980-66518999 | Msa0616610:intron | 45.0% | |
| AAGCTTAGGCTGCTTCCATT+CGG | + | chr4_2:66519129-66519148 | Msa0616610:intron | 45.0% | |
| GGAGTCATATGCTGCATTCT+AGG | + | chr4_2:66519164-66519183 | Msa0616610:intron | 45.0% | |
| TGAGCTTTGCATCTGATTCC+TGG | + | chr4_2:66519556-66519575 | Msa0616610:intron | 45.0% | |
| GAGCTTTGCATCTGATTCCT+GGG | + | chr4_2:66519557-66519576 | Msa0616610:intron | 45.0% | |
| AGCTTTGCATCTGATTCCTG+GGG | + | chr4_2:66519558-66519577 | Msa0616610:intron | 45.0% | |
| TGTGAGAGAAAACCGTTCCA+TGG | - | chr4_2:66520022-66520041 | None:intergenic | 45.0% | |
| CAAAGAATGCCGCCTGTTAA+AGG | - | chr4_2:66520217-66520236 | None:intergenic | 45.0% | |
| CTTTAACAGGCGGCATTCTT+TGG | + | chr4_2:66520215-66520234 | Msa0616610:intron | 45.0% | |
| TGTTTGTACGGGTAGCACTT+TGG | + | chr4_2:66520851-66520870 | Msa0616610:three_prime_UTR | 45.0% | |
| GCCACACAACACATCTATCT+TGG | + | chr4_2:66520936-66520955 | Msa0616610:intron | 45.0% | |
| GGCACCGTACCATTAAATCT+GGG | - | chr4_2:66520974-66520993 | None:intergenic | 45.0% | |
| TGGCACCGTACCATTAAATC+TGG | - | chr4_2:66520975-66520994 | None:intergenic | 45.0% | |
| TTCTTGGTACAAACACGGGT+GGG | - | chr4_2:66521019-66521038 | None:intergenic | 45.0% | |
| ATTCTTGGTACAAACACGGG+TGG | - | chr4_2:66521020-66521039 | None:intergenic | 45.0% | |
| GGGTTAGAGATGTCAGGGAA+CGG | + | chr4_2:66518320-66518339 | Msa0616610:exon | 50.0% | |
| AACAACGAGGGAAACACGAG+AGG | - | chr4_2:66518549-66518568 | None:intergenic | 50.0% | |
| GAGGAAGGAGATGAACAACG+AGG | - | chr4_2:66518562-66518581 | None:intergenic | 50.0% | |
| AGAGAACGAACGGTAGAGGA+AGG | - | chr4_2:66518577-66518596 | None:intergenic | 50.0% | |
| !! | CATTCTTTGGTGCTCCAACG+CGG | + | chr4_2:66520228-66520247 | Msa0616610:CDS | 50.0% |
| ! | GCTCTAGATAAGTTCCGCGT+TGG | - | chr4_2:66520245-66520264 | None:intergenic | 50.0% |
| AGAGTTCCCAACTGTAGCTG+AGG | - | chr4_2:66520297-66520316 | None:intergenic | 50.0% | |
| AGAAATCCTGGTCAGGTGGT+CGG | - | chr4_2:66520360-66520379 | None:intergenic | 50.0% | |
| ! | CTGCAGTATGCTGCTTCAAG+AGG | + | chr4_2:66520590-66520609 | Msa0616610:intron | 50.0% |
| TCTTGGTACAAACACGGGTG+GGG | - | chr4_2:66521018-66521037 | None:intergenic | 50.0% | |
| TGCGGAGAGACAAGGCAAAG+AGG | + | chr4_2:66518299-66518318 | Msa0616610:five_prime_UTR | 55.0% | |
| GCGGAGAGACAAGGCAAAGA+GGG | + | chr4_2:66518300-66518319 | Msa0616610:five_prime_UTR | 55.0% | |
| TCAGCGCTGTCAGGGCATAA+AGG | - | chr4_2:66518488-66518507 | None:intergenic | 55.0% | |
| GCCATGAATCAGCGCTGTCA+GGG | - | chr4_2:66518496-66518515 | None:intergenic | 55.0% | |
| !! | GCTGCTTCAAGAGGAGTGTC+TGG | + | chr4_2:66520599-66520618 | Msa0616610:CDS | 55.0% |
| ! | TGGCACCGTGCCGTTAAATC+TGG | + | chr4_2:66520883-66520902 | Msa0616610:intron | 55.0% |
| ! | GGCACCGTGCCGTTAAATCT+GGG | + | chr4_2:66520884-66520903 | Msa0616610:intron | 55.0% |
| GTGGCCCAGATTTAACGGCA+CGG | - | chr4_2:66520891-66520910 | None:intergenic | 55.0% | |
| CTTGCTTGCGTTGCAGTCGC+TGG | + | chr4_2:66518361-66518380 | Msa0616610:CDS | 60.0% | |
| CTTGCGTTGCAGTCGCTGGT+CGG | + | chr4_2:66518365-66518384 | Msa0616610:CDS | 60.0% | |
| !! | GCCCTGACAGCGCTGATTCA+TGG | + | chr4_2:66518492-66518511 | Msa0616610:CDS | 60.0% |
| GGCCATGAATCAGCGCTGTC+AGG | - | chr4_2:66518497-66518516 | None:intergenic | 60.0% | |
| TTCCTGGGGCAGTTCAGTGC+CGG | + | chr4_2:66519572-66519591 | Msa0616610:intron | 60.0% | |
| CTAACTCCGACCACCTGACC+AGG | + | chr4_2:66520351-66520370 | Msa0616610:CDS | 60.0% | |
| GGATTCGTGTTGCCCGATGC+AGG | + | chr4_2:66520644-66520663 | Msa0616610:CDS | 60.0% | |
| ACACGGGTGGGGTAGCACTT+TGG | - | chr4_2:66521007-66521026 | None:intergenic | 60.0% | |
| TCCTGGGGCAGTTCAGTGCC+GGG | + | chr4_2:66519573-66519592 | Msa0616610:intron | 65.0% | |
| GCGTTGCAGTCGCTGGTCGG+AGG | + | chr4_2:66518368-66518387 | Msa0616610:CDS | 70.0% | |
| ! | ACCCGGCACTGAACTGCCCC+AGG | - | chr4_2:66519577-66519596 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 66517997 | 66521054 | 66517997 | ID=Msa0616610;Name=Msa0616610 |
| chr4_2 | mRNA | 66517997 | 66521054 | 66517997 | ID=Msa0616610-mRNA-1;Parent=Msa0616610;Name=Msa0616610-mRNA-1;_AED=0.07;_eAED=0.07;_QI=332|1|1|1|0.75|0.6|5|214|230 |
| chr4_2 | exon | 66517997 | 66518585 | 66517997 | ID=Msa0616610-mRNA-1:exon:18940;Parent=Msa0616610-mRNA-1 |
| chr4_2 | exon | 66518804 | 66518906 | 66518804 | ID=Msa0616610-mRNA-1:exon:18941;Parent=Msa0616610-mRNA-1 |
| chr4_2 | exon | 66520224 | 66520385 | 66520224 | ID=Msa0616610-mRNA-1:exon:18942;Parent=Msa0616610-mRNA-1 |
| chr4_2 | exon | 66520596 | 66520901 | 66520596 | ID=Msa0616610-mRNA-1:exon:18943;Parent=Msa0616610-mRNA-1 |
| chr4_2 | exon | 66520976 | 66521054 | 66520976 | ID=Msa0616610-mRNA-1:exon:18944;Parent=Msa0616610-mRNA-1 |
| chr4_2 | five_prime_UTR | 66517997 | 66518328 | 66517997 | ID=Msa0616610-mRNA-1:five_prime_utr;Parent=Msa0616610-mRNA-1 |
| chr4_2 | CDS | 66518329 | 66518585 | 66518329 | ID=Msa0616610-mRNA-1:cds;Parent=Msa0616610-mRNA-1 |
| chr4_2 | CDS | 66518804 | 66518906 | 66518804 | ID=Msa0616610-mRNA-1:cds;Parent=Msa0616610-mRNA-1 |
| chr4_2 | CDS | 66520224 | 66520385 | 66520224 | ID=Msa0616610-mRNA-1:cds;Parent=Msa0616610-mRNA-1 |
| chr4_2 | CDS | 66520596 | 66520766 | 66520596 | ID=Msa0616610-mRNA-1:cds;Parent=Msa0616610-mRNA-1 |
| chr4_2 | three_prime_UTR | 66520767 | 66520901 | 66520767 | ID=Msa0616610-mRNA-1:three_prime_utr;Parent=Msa0616610-mRNA-1 |
| chr4_2 | three_prime_UTR | 66520976 | 66521054 | 66520976 | ID=Msa0616610-mRNA-1:three_prime_utr;Parent=Msa0616610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
