AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0618140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0618140 MtrunA17_Chr8g0380091 84.351 524 22 6 1 510 1 478 0.0 798
Msa0618140 MtrunA17_Chr1g0200121 42.929 198 109 3 327 521 27 223 2.41e-46 168
Msa0618140 MtrunA17_Chr1g0200071 42.929 198 109 3 327 521 27 223 2.41e-46 168
Msa0618140 MtrunA17_Chr1g0200091 42.929 198 109 3 327 521 27 223 2.41e-46 168
Msa0618140 MtrunA17_Chr4g0005781 42.424 198 110 3 327 521 27 223 3.62e-46 167
Msa0618140 MtrunA17_Chr6g0458111 42.708 192 107 2 327 516 27 217 4.52e-46 167
Msa0618140 MtrunA17_Chr6g0458091 42.708 192 107 2 327 516 27 217 4.52e-46 167
Msa0618140 MtrunA17_Chr1g0156421 42.188 192 108 2 327 516 27 217 8.06e-44 161
Msa0618140 MtrunA17_Chr8g0336511 42.424 198 110 3 327 521 93 289 1.87e-43 159
Msa0618140 MtrunA17_Chr1g0193591 42.188 192 108 2 327 516 27 217 4.94e-43 159
Msa0618140 MtrunA17_Chr1g0204031 43.750 192 101 3 327 516 27 213 5.23e-42 160
Msa0618140 MtrunA17_Chr1g0150331 40.513 195 110 3 327 516 27 220 6.40e-42 155
Msa0618140 MtrunA17_Chr2g0318291 39.086 197 117 3 327 521 29 224 1.04e-39 144
Msa0618140 MtrunA17_Chr5g0415391 43.636 165 90 2 339 501 1 164 1.08e-36 140
Msa0618140 MtrunA17_Chr6g0483121 42.442 172 95 3 332 500 116 286 4.43e-36 140
Msa0618140 MtrunA17_Chr8g0392641 43.023 172 94 3 332 500 171 341 5.69e-36 141
Msa0618140 MtrunA17_Chr8g0340771 37.824 193 117 2 327 516 27 219 5.47e-35 136
Msa0618140 MtrunA17_Chr8g0340371 40.120 167 94 3 353 516 53 216 1.37e-34 130
Msa0618140 MtrunA17_Chr1g0204041 48.062 129 66 1 328 456 28 155 7.94e-33 123
Msa0618140 MtrunA17_Chr1g0156411 47.500 120 62 1 327 446 31 149 1.52e-29 113
Msa0618140 MtrunA17_Chr1g0196251 30.208 192 104 2 327 516 28 191 1.66e-21 96.7
Msa0618140 MtrunA17_Chr2g0287231 34.437 151 86 4 348 495 40 180 8.67e-18 82.8
Msa0618140 MtrunA17_Chr3g0116821 42.000 100 50 1 360 459 130 221 5.25e-17 84.0
Msa0618140 MtrunA17_Chr7g0259481 41.000 100 51 1 360 459 101 192 1.01e-16 82.8
Msa0618140 MtrunA17_Chr2g0319341 35.897 117 72 2 402 516 1 116 1.88e-15 78.6
Msa0618140 MtrunA17_Chr8g0341021 41.250 80 47 0 325 404 26 105 1.71e-14 69.7
Msa0618140 MtrunA17_Chr2g0298381 43.478 69 39 0 331 399 31 99 1.01e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0618140 AT5G10630.3 45.857 519 168 11 44 506 48 509 1.22e-133 405
Msa0618140 AT5G10630.1 48.225 479 145 10 44 506 47 438 3.25e-133 402
Msa0618140 AT5G10630.5 48.225 479 145 10 44 506 48 439 3.34e-133 402
Msa0618140 AT5G10630.2 48.225 479 145 10 44 506 48 439 3.34e-133 402
Msa0618140 AT5G10630.4 45.627 526 164 13 44 506 48 514 9.37e-133 403
Msa0618140 AT1G07930.2 42.929 198 109 3 327 521 27 223 9.45e-47 167
Msa0618140 AT1G07920.1 42.929 198 109 3 327 521 27 223 4.94e-46 167
Msa0618140 AT1G07940.4 42.929 198 109 3 327 521 27 223 4.94e-46 167
Msa0618140 AT1G07940.1 42.929 198 109 3 327 521 27 223 4.94e-46 167
Msa0618140 AT1G07940.2 42.929 198 109 3 327 521 27 223 4.94e-46 167
Msa0618140 AT1G07940.3 42.929 198 109 3 327 521 27 223 4.94e-46 167
Msa0618140 AT5G60390.3 42.929 198 109 3 327 521 27 223 4.94e-46 167
Msa0618140 AT5G60390.1 42.929 198 109 3 327 521 27 223 4.94e-46 167
Msa0618140 AT5G60390.2 42.929 198 109 3 327 521 27 223 4.94e-46 167
Msa0618140 AT1G07930.1 42.929 198 109 3 327 521 27 223 4.94e-46 167
Msa0618140 AT1G18070.1 43.023 172 94 3 332 500 126 296 1.46e-37 145
Msa0618140 AT1G18070.2 43.023 172 94 3 332 500 126 296 1.46e-37 145
Msa0618140 AT1G18070.3 43.023 172 94 3 332 500 126 296 1.94e-37 145
Msa0618140 AT4G20360.1 41.000 100 51 1 360 459 117 208 3.72e-16 81.6
Msa0618140 AT4G20360.2 41.000 100 51 1 360 459 117 208 3.72e-16 81.6
Msa0618140 AT4G02930.1 40.000 100 52 1 360 459 105 196 5.69e-16 80.9

Find 127 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCCTACATTCTTCAAAAT+TGG 0.138581 4_2:-69030652 Msa0618140:CDS
TTTATCCCAAACATGATTTC+TGG 0.174281 4_2:-69029529 Msa0618140:CDS
TGAATCGGGAAGCGAATATT+AGG 0.230338 4_2:+69033365 None:intergenic
TATAAAATCAAATCGGTCTT+TGG 0.261931 4_2:+69029336 None:intergenic
CCAAACTCCAGGTGGCTTAA+TGG 0.264147 4_2:+69032959 None:intergenic
ATGGTCTCTTTCTTTGTATC+AGG 0.265545 4_2:+69032978 None:intergenic
GGTAAAACCTAATTGGTCTA+TGG 0.273561 4_2:+69033255 None:intergenic
TGCCATGGAAAATCAAAATT+TGG 0.281045 4_2:-69029242 Msa0618140:CDS
ATCTAAAGTACAAATGGTTT+TGG 0.291277 4_2:-69033468 Msa0618140:five_prime_UTR
AATTAATCCATAGACCAATT+AGG 0.304473 4_2:-69033262 Msa0618140:five_prime_UTR
CCATTAAGCCACCTGGAGTT+TGG 0.317368 4_2:-69032959 Msa0618140:CDS
TGGTAGGTTATTACACCTAT+TGG 0.325002 4_2:-69029839 Msa0618140:intron
TTATCACTCTCTTCAACTTT+TGG 0.331231 4_2:+69030180 None:intergenic
CCCTCAACCTATCTGTCTTC+AGG 0.341132 4_2:-69030612 Msa0618140:CDS
TCTGATGCTCATTTCAAAAC+TGG 0.349142 4_2:-69029208 Msa0618140:CDS
TGAAAAGGAGGCCAAGTTAC+AGG 0.354078 4_2:-69029786 Msa0618140:intron
TATTCCCCTTTCCCTTTCTT+CGG 0.355806 4_2:+69029630 None:intergenic
GCACAACTTATTAGAAGTTT+CGG 0.362581 4_2:-69029409 Msa0618140:CDS
AGAAGAAGGTGGGGTTTGAT+TGG 0.367458 4_2:+69033331 None:intergenic
GCATAGTTTCCTTTGTCCTT+TGG 0.368485 4_2:+69030282 None:intergenic
GAAGTTGAATCTGAAAATTA+TGG 0.370235 4_2:-69033114 Msa0618140:intron
TCAAAGATTCTTCTCTCTCA+TGG 0.378500 4_2:-69029276 Msa0618140:CDS
ATGCCGCGTAAAGTAAACTA+TGG 0.383974 4_2:-69033186 Msa0618140:CDS
AGTCTTGGGTAAAACCTAAT+TGG 0.384317 4_2:+69033248 None:intergenic
GGCCTACATTCTTCAAAATT+GGG 0.384535 4_2:-69030651 Msa0618140:CDS
CCAGTATGAACCACATCATC+TGG 0.394923 4_2:+69030672 None:intergenic
GTGAAGACCTATATTTAAAG+AGG 0.395003 4_2:+69031184 None:intergenic
TTGGTTAATTAAATCTGAAT+CGG 0.395124 4_2:+69033350 None:intergenic
GTTGTCTGCACTTTCAGTAT+TGG 0.398903 4_2:+69030401 None:intergenic
AGAATTTCATGAAATTCATA+AGG 0.403160 4_2:-69031228 Msa0618140:CDS
CCAGATGATGTGGTTCATAC+TGG 0.403541 4_2:-69030672 Msa0618140:CDS
AGTTAGAAGAAACTCGTAGT+AGG 0.412268 4_2:-69033435 Msa0618140:five_prime_UTR
GGTAGGTTATTACACCTATT+GGG 0.413223 4_2:-69029838 Msa0618140:intron
AAGGATCCTTTGCTTATGCT+TGG 0.413794 4_2:-69029669 Msa0618140:CDS
CATGCTCTCGTCATTGTCAT+AGG 0.414774 4_2:+69032920 None:intergenic
AGGATCCTTTGCTTATGCTT+GGG 0.420061 4_2:-69029668 Msa0618140:CDS
GTAGCTCCAGAAATCATGTT+TGG 0.427200 4_2:+69029523 None:intergenic
GTTGTTGTGCTTGACTCTCC+TGG 0.435036 4_2:-69029562 Msa0618140:CDS
AACTGTGTGGTTAAAACTGC+TGG 0.439302 4_2:+69030113 None:intergenic
GAATTTCATGAAATTCTCCT+TGG 0.443794 4_2:+69031234 None:intergenic
GAAATTGATCTCGAAACAAT+TGG 0.448800 4_2:-69030336 Msa0618140:CDS
GAACTTTGAGATCTTGCATC+AGG 0.458431 4_2:+69030090 None:intergenic
GATGTGATCTTAACTTCCCT+TGG 0.458884 4_2:-69029166 Msa0618140:CDS
ACCTCCAACATCAACAAAAC+AGG 0.463396 4_2:-69032843 Msa0618140:intron
ATGACTTGCTGTGATATTTG+TGG 0.468111 4_2:-69032900 Msa0618140:CDS
CTTGTTATAGATGCCTCACT+TGG 0.468135 4_2:-69029481 Msa0618140:CDS
AGACAAATCTAAAGTACAAA+TGG 0.470127 4_2:-69033474 Msa0618140:five_prime_UTR
TGGTTAATTAAATCTGAATC+GGG 0.471055 4_2:+69033351 None:intergenic
TGGCGTTCTACGTCACCCCT+TGG 0.471157 4_2:-69032880 Msa0618140:CDS
TAAGCAGTTAACAGAGTCTT+GGG 0.472195 4_2:+69033234 None:intergenic
TAGCTCCAGAAATCATGTTT+GGG 0.472643 4_2:+69029524 None:intergenic
TTGATGAAAGTTCCGAAGAA+AGG 0.474986 4_2:-69029642 Msa0618140:CDS
CGGTGAAATTACCTGTAACT+TGG 0.479336 4_2:+69029775 None:intergenic
GCCTGAAGACAGATAGGTTG+AGG 0.483421 4_2:+69030611 None:intergenic
TCACTTGGTGCATTTGAAGC+TGG 0.485978 4_2:-69029466 Msa0618140:CDS
AGCCATCCCTCTTTAAATAT+AGG 0.486162 4_2:-69031191 Msa0618140:intron
CGTCACCCCTTGGTTATCAA+TGG 0.487239 4_2:-69032870 Msa0618140:CDS
TTCTGATAATACTAATGCTA+AGG 0.487271 4_2:-69030070 Msa0618140:CDS
GAATCGGGAAGCGAATATTA+GGG 0.487500 4_2:+69033366 None:intergenic
GATGTCTTATAAAATCAAAT+CGG 0.494118 4_2:+69029329 None:intergenic
TGATGAAAGTTCCGAAGAAA+GGG 0.495673 4_2:-69029641 Msa0618140:CDS
TGGTGCATTTGAAGCTGGTA+TGG 0.496309 4_2:-69029461 Msa0618140:CDS
TTCTTGGAATTCGTCCCAAT+AGG 0.498085 4_2:+69029824 None:intergenic
GTTACAGCCTGAAGACAGAT+AGG 0.502890 4_2:+69030605 None:intergenic
TGAAAAGATGAGAAGAAGGT+GGG 0.503608 4_2:+69033321 None:intergenic
TCTTCAAAATTGGGTTTGAA+AGG 0.509780 4_2:-69030642 Msa0618140:CDS
TTTCTTACCAGCCAGAAAAG+TGG 0.510046 4_2:-69030032 Msa0618140:CDS
TGATCTTAACTTCCCTTGGT+GGG 0.513518 4_2:-69029162 Msa0618140:CDS
TTACTACGACGATGACTATG+AGG 0.515875 4_2:-69033157 Msa0618140:CDS
GTGATCTTAACTTCCCTTGG+TGG 0.517278 4_2:-69029163 Msa0618140:CDS
ATAAGCAGTTAACAGAGTCT+TGG 0.518813 4_2:+69033233 None:intergenic
TATAGTTGCAGTAAATAAGA+TGG 0.519968 4_2:-69029374 Msa0618140:CDS
AATAACCATGACAGTGGCTG+TGG 0.522889 4_2:-69029611 Msa0618140:CDS
GCTGGTATGGATGGCGGCAA+AGG 0.523737 4_2:-69029448 Msa0618140:CDS
GTTAGAAGAAACTCGTAGTA+GGG 0.525160 4_2:-69033434 Msa0618140:five_prime_UTR
CCTGAAGACAGATAGGTTGA+GGG 0.527815 4_2:+69030612 None:intergenic
GACCTATATTTAAAGAGGGA+TGG 0.530219 4_2:+69031189 None:intergenic
GGAATGTTTCTCCGCTCATG+TGG 0.531170 4_2:-69029301 Msa0618140:CDS
CAATCAAGCAAAGAAAAGTC+CGG 0.537201 4_2:-69030219 Msa0618140:CDS
CAGTATGAACCACATCATCT+GGG 0.538586 4_2:+69030673 None:intergenic
CGTTCCATCCCCAGATGATG+TGG 0.542606 4_2:-69030682 Msa0618140:CDS
GAATTGAAAAGATGAGAAGA+AGG 0.542714 4_2:+69033317 None:intergenic
CGGGAAGCGAATATTAGGGT+TGG 0.549747 4_2:+69033370 None:intergenic
TCTGATAATACTAATGCTAA+GGG 0.556699 4_2:-69030069 Msa0618140:CDS
GGGATAAAATCTTTATGACC+AGG 0.560214 4_2:+69029544 None:intergenic
TTGAAAAGATGAGAAGAAGG+TGG 0.562911 4_2:+69033320 None:intergenic
ATGGATTCCCTTGAGTGCCA+TGG 0.565826 4_2:-69029257 Msa0618140:CDS
GATGGAACGTCAAACTTGAA+AGG 0.569290 4_2:+69030696 None:intergenic
TGGAGTTAAACAAGTATGAT+CGG 0.570030 4_2:+69033390 None:intergenic
ATAGAGCAACTCCAAACTCC+AGG 0.571736 4_2:+69032948 None:intergenic
TGAAGACCTATATTTAAAGA+GGG 0.572542 4_2:+69031185 None:intergenic
AAAGTTCCGAAGAAAGGGAA+AGG 0.572545 4_2:-69029636 Msa0618140:CDS
GCATTTGAAGCTGGTATGGA+TGG 0.575093 4_2:-69029457 Msa0618140:CDS
AAGTTCCGAAGAAAGGGAAA+GGG 0.576526 4_2:-69029635 Msa0618140:CDS
GAAGAAACTCGTAGTAGGGA+TGG 0.578809 4_2:-69033430 Msa0618140:five_prime_UTR
TGGTAGTGCAGACAAACTAC+CGG 0.582720 4_2:+69030200 None:intergenic
GTGGTTCCATTGATAACCAA+GGG 0.585825 4_2:+69032864 None:intergenic
AGTTTGTCTTCTAACAAAGA+CGG 0.587145 4_2:-69030153 Msa0618140:CDS
GAATGTTTCTCCGCTCATGT+GGG 0.593120 4_2:-69029300 Msa0618140:CDS
AAAGAGACCATTAAGCCACC+TGG 0.599671 4_2:-69032966 Msa0618140:CDS
CTTATCAGCATCTTTGCCAA+AGG 0.600455 4_2:-69030298 Msa0618140:CDS
AGCTTCAAATGCACCAAGTG+AGG 0.601580 4_2:+69029468 None:intergenic
TACAAGCTTGAGAATGTCCA+AGG 0.604749 4_2:-69031251 Msa0618140:CDS
CTTATACCAAACTCATTCGA+CGG 0.618581 4_2:-69033215 Msa0618140:five_prime_UTR
ATATGCCACAGCCACTGTCA+TGG 0.621453 4_2:+69029606 None:intergenic
TATTTACTGCAACTATAACA+TGG 0.621754 4_2:+69029380 None:intergenic
GAAAAGATGAGAAGAAGGTG+GGG 0.621861 4_2:+69033322 None:intergenic
GCATCTTTGCCAAAGGACAA+AGG 0.623123 4_2:-69030291 Msa0618140:CDS
AGTTCCGAAGAAAGGGAAAG+GGG 0.633252 4_2:-69029634 Msa0618140:CDS
ATTCCATAGTTTACTTTACG+CGG 0.636455 4_2:+69033183 None:intergenic
TGAACCACATCATCTGGGGA+TGG 0.637515 4_2:+69030678 None:intergenic
GAAGACAGATAGGTTGAGGG+AGG 0.639115 4_2:+69030615 None:intergenic
GGTGGTTCCATTGATAACCA+AGG 0.649942 4_2:+69032863 None:intergenic
AATCTTTGAACCCACATGAG+CGG 0.652547 4_2:+69029290 None:intergenic
AAGTGCCCAAGCATAAGCAA+AGG 0.652690 4_2:+69029663 None:intergenic
AACGTATCTTCAGATTGTTG+AGG 0.653220 4_2:+69030003 None:intergenic
TTATAGTCTAATGCCCACCA+AGG 0.654833 4_2:+69029149 None:intergenic
TTTGAAATGAGCATCAGAAG+GGG 0.654859 4_2:+69029213 None:intergenic
TATAGTCTAATGCCCACCAA+GGG 0.655173 4_2:+69029150 None:intergenic
TGGTAAGAAACTTGTTGATG+AGG 0.658411 4_2:+69030045 None:intergenic
AAGACAGATAGGTTGAGGGA+GGG 0.666145 4_2:+69030616 None:intergenic
AGTATGAACCACATCATCTG+GGG 0.679020 4_2:+69030674 None:intergenic
GAGCAACTCCAAACTCCAGG+TGG 0.698932 4_2:+69032951 None:intergenic
AAGGGGAATAACCATGACAG+TGG 0.707209 4_2:-69029617 Msa0618140:CDS
TTTGAAGCTGGTATGGATGG+CGG 0.707438 4_2:-69029454 Msa0618140:CDS
TGGTTCCATTGATAACCAAG+GGG 0.738907 4_2:+69032865 None:intergenic
ATCTTGCATCAGGAACTGTG+TGG 0.809595 4_2:+69030100 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATTCTTCAAAAAT+TGG - chr4_2:69032385-69032404 Msa0618140:intron 10.0%
!! TACAACTATTAATGAATAAA+TGG + chr4_2:69029828-69029847 None:intergenic 15.0%
!! TAAAATGATATAAAATTCGT+GGG - chr4_2:69030656-69030675 Msa0618140:CDS 15.0%
!! TCCTTATTAATAAAATAGTT+AGG - chr4_2:69031625-69031644 Msa0618140:intron 15.0%
!!! ACCTAACTATTTTATTAATA+AGG + chr4_2:69031629-69031648 None:intergenic 15.0%
!! TTATTAATAAAATAGTTAGG+TGG - chr4_2:69031628-69031647 Msa0618140:intron 15.0%
!! TTAGAATAAAAGATCTTATT+AGG - chr4_2:69031788-69031807 Msa0618140:intron 15.0%
!! TAAAAATAAATGGTTATGTA+AGG + chr4_2:69031884-69031903 None:intergenic 15.0%
!! CACTATTGTTTAAAAATAAA+TGG + chr4_2:69031894-69031913 None:intergenic 15.0%
!! AACATGAAAAAACTAAATAT+GGG + chr4_2:69032102-69032121 None:intergenic 15.0%
!! AAACATGAAAAAACTAAATA+TGG + chr4_2:69032103-69032122 None:intergenic 15.0%
!! TTGGTTAATTAAATCTGAAT+CGG + chr4_2:69029293-69029312 None:intergenic 20.0%
!!! TTGTAATTTAGTTTAGTACT+AGG - chr4_2:69029843-69029862 Msa0618140:intron 20.0%
!! AACACAATTTACTAATTTGA+CGG + chr4_2:69030279-69030298 None:intergenic 20.0%
!!! TAACTTGTTTTTCATAGTAA+TGG + chr4_2:69030628-69030647 None:intergenic 20.0%
!! GTAAAATGATATAAAATTCG+TGG - chr4_2:69030655-69030674 Msa0618140:CDS 20.0%
!!! AGTTAATTATCAATTTTGCT+TGG + chr4_2:69031043-69031062 None:intergenic 20.0%
!!! AAGCAAAATTGATAATTAAC+TGG - chr4_2:69031042-69031061 Msa0618140:intron 20.0%
!! AGAATTTCATGAAATTCATA+AGG - chr4_2:69031412-69031431 Msa0618140:intron 20.0%
!! AAAAGACATTTAATATGAGA+TGG + chr4_2:69031550-69031569 None:intergenic 20.0%
!!! CTCATATTAAATGTCTTTTA+AGG - chr4_2:69031551-69031570 Msa0618140:intron 20.0%
!!! AGTGATCAAATCTTTTTTAT+TGG - chr4_2:69031910-69031929 Msa0618140:intron 20.0%
!!! TTTTTTTTTGGTTAAAGCTA+GGG + chr4_2:69032068-69032087 None:intergenic 20.0%
!! ACATGAAAAAACTAAATATG+GGG + chr4_2:69032101-69032120 None:intergenic 20.0%
!! TACATCAATATTTATCCAAA+AGG + chr4_2:69032131-69032150 None:intergenic 20.0%
!!! TTAAAAACTCTAAAGATTCT+CGG - chr4_2:69032179-69032198 Msa0618140:intron 20.0%
!! AAAAAATAAAAATGACTCCA+CGG + chr4_2:69032888-69032907 None:intergenic 20.0%
!! GATGTCTTATAAAATCAAAT+CGG + chr4_2:69033314-69033333 None:intergenic 20.0%
!! AGACAAATCTAAAGTACAAA+TGG - chr4_2:69029166-69029185 Msa0618140:CDS 25.0%
!!! ATCTAAAGTACAAATGGTTT+TGG - chr4_2:69029172-69029191 Msa0618140:CDS 25.0%
! TGGTTAATTAAATCTGAATC+GGG + chr4_2:69029292-69029311 None:intergenic 25.0%
! AATTAATCCATAGACCAATT+AGG - chr4_2:69029378-69029397 Msa0618140:CDS 25.0%
! GAAGTTGAATCTGAAAATTA+TGG - chr4_2:69029526-69029545 Msa0618140:CDS 25.0%
!! GTTTGTGTTATTAAATAAGC+AGG - chr4_2:69029629-69029648 Msa0618140:CDS 25.0%
! TCGTTCAATAACAACTTTAA+CGG + chr4_2:69029984-69030003 None:intergenic 25.0%
! AACATCAACATTATGTGTAA+TGG + chr4_2:69030164-69030183 None:intergenic 25.0%
! TATTGAAATCCTCTAATTAC+AGG - chr4_2:69030310-69030329 Msa0618140:CDS 25.0%
! ATTGAAATCCTCTAATTACA+GGG - chr4_2:69030311-69030330 Msa0618140:CDS 25.0%
!!! GTTTTTAAAAAACAGGAGAA+GGG + chr4_2:69030390-69030409 None:intergenic 25.0%
!!! AGTTTTTAAAAAACAGGAGA+AGG + chr4_2:69030391-69030410 None:intergenic 25.0%
!!! TTTGGGAGTTTTTAAAAAAC+AGG + chr4_2:69030397-69030416 None:intergenic 25.0%
!!! TCATGCTATTATTTCTGATA+TGG - chr4_2:69030549-69030568 Msa0618140:intron 25.0%
!!! CATGCTATTATTTCTGATAT+GGG - chr4_2:69030550-69030569 Msa0618140:intron 25.0%
!!! GCTTGGTTATTTTAATTCAT+CGG + chr4_2:69031026-69031045 None:intergenic 25.0%
!! AATTGATAATTAACTGGTCT+TGG - chr4_2:69031048-69031067 Msa0618140:intron 25.0%
! TGAAGACCTATATTTAAAGA+GGG + chr4_2:69031458-69031477 None:intergenic 25.0%
! GACTGTGATAGAATAAATAA+GGG - chr4_2:69031650-69031669 Msa0618140:intron 25.0%
!!! ATGTGCTATGTTTTAGTTTT+TGG - chr4_2:69031835-69031854 Msa0618140:intron 25.0%
!!! TCAAATCTTTTTTATTGGAG+TGG - chr4_2:69031915-69031934 Msa0618140:intron 25.0%
!!! CTTTTTTTTTGGTTAAAGCT+AGG + chr4_2:69032069-69032088 None:intergenic 25.0%
!!! GGGAAAATCTACTTTTTTTT+TGG + chr4_2:69032080-69032099 None:intergenic 25.0%
! CATGAAAAAACTAAATATGG+GGG + chr4_2:69032100-69032119 None:intergenic 25.0%
!!! TTTCATGTTTTAGTTCCTTT+TGG - chr4_2:69032113-69032132 Msa0618140:intron 25.0%
!! GAGATCAATTTCTACATTTT+TGG + chr4_2:69032296-69032315 None:intergenic 25.0%
! TCTTCAAAAATTGGTACAAA+TGG - chr4_2:69032394-69032413 Msa0618140:intron 25.0%
! TTCTGATAATACTAATGCTA+AGG - chr4_2:69032570-69032589 Msa0618140:intron 25.0%
! TCTGATAATACTAATGCTAA+GGG - chr4_2:69032571-69032590 Msa0618140:intron 25.0%
!! ATTTTTGTGCATTTCTTTCT+TGG + chr4_2:69032835-69032854 None:intergenic 25.0%
! AGAAATGCACAAAAATGAAA+AGG - chr4_2:69032839-69032858 Msa0618140:intron 25.0%
!!! GTGGAGTCATTTTTATTTTT+TGG - chr4_2:69032887-69032906 Msa0618140:CDS 25.0%
! TATTTACTGCAACTATAACA+TGG + chr4_2:69033263-69033282 None:intergenic 25.0%
! TATAGTTGCAGTAAATAAGA+TGG - chr4_2:69033266-69033285 Msa0618140:five_prime_UTR 25.0%
! TATAAAATCAAATCGGTCTT+TGG + chr4_2:69033307-69033326 None:intergenic 25.0%
!!! TACCAAATTTTGATTTTCCA+TGG + chr4_2:69033403-69033422 None:intergenic 25.0%
!!! AAAGTACAAATGGTTTTGGT+TGG - chr4_2:69029176-69029195 Msa0618140:CDS 30.0%
TGGAGTTAAACAAGTATGAT+CGG + chr4_2:69029253-69029272 None:intergenic 30.0%
GAATTGAAAAGATGAGAAGA+AGG + chr4_2:69029326-69029345 None:intergenic 30.0%
ATTCCATAGTTTACTTTACG+CGG + chr4_2:69029460-69029479 None:intergenic 30.0%
!! TTTACCTGTTTTGTTGATGT+TGG + chr4_2:69029804-69029823 None:intergenic 30.0%
TTAGTTTAGTACTAGGTCTA+AGG - chr4_2:69029850-69029869 Msa0618140:intron 30.0%
CGTTCAATAACAACTTTAAC+GGG + chr4_2:69029983-69030002 None:intergenic 30.0%
TTTAAAAACTCCCAAACTAG+TGG - chr4_2:69030401-69030420 Msa0618140:CDS 30.0%
! AAGACAATAAAGCTTTGTCT+CGG + chr4_2:69030467-69030486 None:intergenic 30.0%
!! AGACAAAGCTTTATTGTCTT+AGG - chr4_2:69030467-69030486 Msa0618140:CDS 30.0%
!! AAGCTTTATTGTCTTAGGTA+AGG - chr4_2:69030472-69030491 Msa0618140:intron 30.0%
!! ATTGATTGGCTTGTTTGATA+TGG - chr4_2:69030509-69030528 Msa0618140:intron 30.0%
!! TTATTTCTGATATGGGAAGA+TGG - chr4_2:69030557-69030576 Msa0618140:intron 30.0%
! TATTTCTGATATGGGAAGAT+GGG - chr4_2:69030558-69030577 Msa0618140:intron 30.0%
GAAACTACAACTTTATTCGA+TGG + chr4_2:69030771-69030790 None:intergenic 30.0%
TGAGTGACAATTTCGTTTAT+AGG - chr4_2:69030932-69030951 Msa0618140:intron 30.0%
GAGTGACAATTTCGTTTATA+GGG - chr4_2:69030933-69030952 Msa0618140:intron 30.0%
TTTATAGGGCTATTAGAGAA+AGG - chr4_2:69030947-69030966 Msa0618140:intron 30.0%
CTTAAAGGGAATTTGACTAT+AGG - chr4_2:69031104-69031123 Msa0618140:intron 30.0%
ATAGCTGAGATCTTAAACTT+CGG - chr4_2:69031141-69031160 Msa0618140:intron 30.0%
GAATTTCATGAAATTCTCCT+TGG + chr4_2:69031409-69031428 None:intergenic 30.0%
GTGAAGACCTATATTTAAAG+AGG + chr4_2:69031459-69031478 None:intergenic 30.0%
AGACATTTAATATGAGATGG+AGG + chr4_2:69031547-69031566 None:intergenic 30.0%
!!! GATATTTTAGTCAATGAAGC+TGG + chr4_2:69031607-69031626 None:intergenic 30.0%
GGACTGTGATAGAATAAATA+AGG - chr4_2:69031649-69031668 Msa0618140:intron 30.0%
AGGGTAGTATTAGTAGAAAT+AGG - chr4_2:69031669-69031688 Msa0618140:intron 30.0%
CTCATATTAAGTGTAATGCT+TGG + chr4_2:69031752-69031771 None:intergenic 30.0%
GCATTACACTTAATATGAGA+CGG - chr4_2:69031753-69031772 Msa0618140:intron 30.0%
!! AACCCAATTTTGAAGAATGT+AGG + chr4_2:69031994-69032013 None:intergenic 30.0%
TCTTCAAAATTGGGTTTGAA+AGG - chr4_2:69031998-69032017 Msa0618140:intron 30.0%
GAAATTGATCTCGAAACAAT+TGG - chr4_2:69032304-69032323 Msa0618140:intron 30.0%
! TTATCACTCTCTTCAACTTT+TGG + chr4_2:69032463-69032482 None:intergenic 30.0%
AGTTTGTCTTCTAACAAAGA+CGG - chr4_2:69032487-69032506 Msa0618140:intron 30.0%
! TGGTGGATATATGAAAGAAT+AGG + chr4_2:69032697-69032716 None:intergenic 30.0%
TATTCTTTCATATATCCACC+AGG - chr4_2:69032696-69032715 Msa0618140:intron 30.0%
ATTTCTTCCTTGAAATATCC+TGG + chr4_2:69032717-69032736 None:intergenic 30.0%
GTGCTTAATCTGTTAATTGT+AGG - chr4_2:69032745-69032764 Msa0618140:intron 30.0%
CTTAATCTGTTAATTGTAGG+TGG - chr4_2:69032748-69032767 Msa0618140:intron 30.0%
AATGCACAAAAATGAAAAGG+AGG - chr4_2:69032842-69032861 Msa0618140:intron 30.0%
TTTATCCCAAACATGATTTC+TGG - chr4_2:69033111-69033130 Msa0618140:intron 30.0%
GCACAACTTATTAGAAGTTT+CGG - chr4_2:69033231-69033250 Msa0618140:five_prime_UTR 30.0%
! TGATTTTATAAGACATCAGC+TGG - chr4_2:69033317-69033336 Msa0618140:five_prime_UTR 30.0%
! GATTTTATAAGACATCAGCT+GGG - chr4_2:69033318-69033337 Msa0618140:five_prime_UTR 30.0%
TGCCATGGAAAATCAAAATT+TGG - chr4_2:69033398-69033417 Msa0618140:five_prime_UTR 30.0%
!!! TTTTGAAATGAGCATCAGAA+GGG + chr4_2:69033431-69033450 None:intergenic 30.0%
AGTTAGAAGAAACTCGTAGT+AGG - chr4_2:69029205-69029224 Msa0618140:CDS 35.0%
GTTAGAAGAAACTCGTAGTA+GGG - chr4_2:69029206-69029225 Msa0618140:CDS 35.0%
TGAAAAGATGAGAAGAAGGT+GGG + chr4_2:69029322-69029341 None:intergenic 35.0%
TTGAAAAGATGAGAAGAAGG+TGG + chr4_2:69029323-69029342 None:intergenic 35.0%
! GGTAAAACCTAATTGGTCTA+TGG + chr4_2:69029388-69029407 None:intergenic 35.0%
AGTCTTGGGTAAAACCTAAT+TGG + chr4_2:69029395-69029414 None:intergenic 35.0%
TAAGCAGTTAACAGAGTCTT+GGG + chr4_2:69029409-69029428 None:intergenic 35.0%
ATAAGCAGTTAACAGAGTCT+TGG + chr4_2:69029410-69029429 None:intergenic 35.0%
CTTATACCAAACTCATTCGA+CGG - chr4_2:69029425-69029444 Msa0618140:CDS 35.0%
ATGGTCTCTTTCTTTGTATC+AGG + chr4_2:69029665-69029684 None:intergenic 35.0%
!! ATGACTTGCTGTGATATTTG+TGG - chr4_2:69029740-69029759 Msa0618140:intron 35.0%
TTTAGTACTAGGTCTAAGGA+GGG - chr4_2:69029854-69029873 Msa0618140:intron 35.0%
CAAGAACTTCAACTACAAAC+TGG + chr4_2:69030017-69030036 None:intergenic 35.0%
TTCCTCTACTTCCCATATTT+GGG + chr4_2:69030082-69030101 None:intergenic 35.0%
TGAGAAAAAGAGATCTGCAA+CGG + chr4_2:69030217-69030236 None:intergenic 35.0%
TACCAAATCACAAATGCCTT+CGG - chr4_2:69030238-69030257 Msa0618140:CDS 35.0%
TTACAGTTCCCTGTAATTAG+AGG + chr4_2:69030322-69030341 None:intergenic 35.0%
AAAAAACAGGAGAAGGGTTT+GGG + chr4_2:69030384-69030403 None:intergenic 35.0%
TAAAAAACAGGAGAAGGGTT+TGG + chr4_2:69030385-69030404 None:intergenic 35.0%
! AATAAAGCTTTGTCTCGGAA+GGG + chr4_2:69030462-69030481 None:intergenic 35.0%
AGTAAAGATGCCTCATTGAT+TGG - chr4_2:69030495-69030514 Msa0618140:intron 35.0%
ATCAAACAAGCCAATCAATG+AGG + chr4_2:69030508-69030527 None:intergenic 35.0%
! TCCATGTCACATCTTTTAGA+AGG - chr4_2:69030690-69030709 Msa0618140:CDS 35.0%
! ACCTTCTAAAAGATGTGACA+TGG + chr4_2:69030694-69030713 None:intergenic 35.0%
!!! TCTTTTAGAAGGTATTGCAG+TGG - chr4_2:69030701-69030720 Msa0618140:CDS 35.0%
GATAATAGCACACTCAACTA+AGG + chr4_2:69030869-69030888 None:intergenic 35.0%
AAAACCTATGAGGTACAGTT+TGG + chr4_2:69030982-69031001 None:intergenic 35.0%
!!! TCCTGGTTTTGACAACTTAA+AGG - chr4_2:69031089-69031108 Msa0618140:intron 35.0%
!!! CCTGGTTTTGACAACTTAAA+GGG - chr4_2:69031090-69031109 Msa0618140:intron 35.0%
AACCTAGCACTATACAATGT+GGG + chr4_2:69031179-69031198 None:intergenic 35.0%
AAACCTAGCACTATACAATG+TGG + chr4_2:69031180-69031199 None:intergenic 35.0%
TAGTGCTAGGTTTACAACAA+TGG - chr4_2:69031187-69031206 Msa0618140:intron 35.0%
!! CATCAAAGAGATTTTTCAGC+GGG + chr4_2:69031230-69031249 None:intergenic 35.0%
!! GCATCAAAGAGATTTTTCAG+CGG + chr4_2:69031231-69031250 None:intergenic 35.0%
GAAGATACAAACAAAACTCC+TGG - chr4_2:69031255-69031274 Msa0618140:CDS 35.0%
GCAATGATTGAAAAGAGACT+GGG + chr4_2:69031295-69031314 None:intergenic 35.0%
GGAAATATCACAACCTCTTT+GGG + chr4_2:69031329-69031348 None:intergenic 35.0%
TGGAAATATCACAACCTCTT+TGG + chr4_2:69031330-69031349 None:intergenic 35.0%
ATATTTCCAATGCAAGACGT+TGG - chr4_2:69031341-69031360 Msa0618140:intron 35.0%
AGCCATCCCTCTTTAAATAT+AGG - chr4_2:69031449-69031468 Msa0618140:intron 35.0%
GACCTATATTTAAAGAGGGA+TGG + chr4_2:69031454-69031473 None:intergenic 35.0%
!!! CAATGAAGCTGGTTTTATCA+TGG + chr4_2:69031596-69031615 None:intergenic 35.0%
TACACTTAATATGAGACGGA+AGG - chr4_2:69031757-69031776 Msa0618140:intron 35.0%
TGGCCTACATTCTTCAAAAT+TGG - chr4_2:69031988-69032007 Msa0618140:intron 35.0%
GGCCTACATTCTTCAAAATT+GGG - chr4_2:69031989-69032008 Msa0618140:intron 35.0%
CAATCAAGCAAAGAAAAGTC+CGG - chr4_2:69032421-69032440 Msa0618140:intron 35.0%
!! TGGTAAGAAACTTGTTGATG+AGG + chr4_2:69032598-69032617 None:intergenic 35.0%
AACGTATCTTCAGATTGTTG+AGG + chr4_2:69032640-69032659 None:intergenic 35.0%
ATATCCACCAGGATATTTCA+AGG - chr4_2:69032707-69032726 Msa0618140:intron 35.0%
TCTGGAAAATCAACACTATC+TGG - chr4_2:69032781-69032800 Msa0618140:intron 35.0%
GAAAATCAACACTATCTGGT+AGG - chr4_2:69032785-69032804 Msa0618140:intron 35.0%
TGGTAGGTTATTACACCTAT+TGG - chr4_2:69032801-69032820 Msa0618140:intron 35.0%
GGTAGGTTATTACACCTATT+GGG - chr4_2:69032802-69032821 Msa0618140:intron 35.0%
! TTCCTCGTCTCTTTTAATCA+GGG - chr4_2:69032946-69032965 Msa0618140:CDS 35.0%
TTGATGAAAGTTCCGAAGAA+AGG - chr4_2:69032998-69033017 Msa0618140:intron 35.0%
TGATGAAAGTTCCGAAGAAA+GGG - chr4_2:69032999-69033018 Msa0618140:intron 35.0%
GGGATAAAATCTTTATGACC+AGG + chr4_2:69033099-69033118 None:intergenic 35.0%
TAGCTCCAGAAATCATGTTT+GGG + chr4_2:69033119-69033138 None:intergenic 35.0%
TCAAAGATTCTTCTCTCTCA+TGG - chr4_2:69033364-69033383 Msa0618140:five_prime_UTR 35.0%
! TTTGAAATGAGCATCAGAAG+GGG + chr4_2:69033430-69033449 None:intergenic 35.0%
!!! GTTTTGAAATGAGCATCAGA+AGG + chr4_2:69033432-69033451 None:intergenic 35.0%
TCTGATGCTCATTTCAAAAC+TGG - chr4_2:69033432-69033451 Msa0618140:five_prime_UTR 35.0%
GAATCGGGAAGCGAATATTA+GGG + chr4_2:69029277-69029296 None:intergenic 40.0%
TGAATCGGGAAGCGAATATT+AGG + chr4_2:69029278-69029297 None:intergenic 40.0%
GAAAAGATGAGAAGAAGGTG+GGG + chr4_2:69029321-69029340 None:intergenic 40.0%
! GATTTTCCGTCGAATGAGTT+TGG + chr4_2:69029434-69029453 None:intergenic 40.0%
ATGCCGCGTAAAGTAAACTA+TGG - chr4_2:69029454-69029473 Msa0618140:CDS 40.0%
TTACTACGACGATGACTATG+AGG - chr4_2:69029483-69029502 Msa0618140:CDS 40.0%
! TGGTTCCATTGATAACCAAG+GGG + chr4_2:69029778-69029797 None:intergenic 40.0%
! GTGGTTCCATTGATAACCAA+GGG + chr4_2:69029779-69029798 None:intergenic 40.0%
!! TGTTTTGTTGATGTTGGAGG+TGG + chr4_2:69029798-69029817 None:intergenic 40.0%
ACCTCCAACATCAACAAAAC+AGG - chr4_2:69029797-69029816 Msa0618140:CDS 40.0%
!! ACCTGTTTTGTTGATGTTGG+AGG + chr4_2:69029801-69029820 None:intergenic 40.0%
GTTTAGTACTAGGTCTAAGG+AGG - chr4_2:69029853-69029872 Msa0618140:intron 40.0%
TGAACTTCCTGTTGCTCTTA+TGG - chr4_2:69029903-69029922 Msa0618140:intron 40.0%
AGTTTCTCCATAAGAGCAAC+AGG + chr4_2:69029913-69029932 None:intergenic 40.0%
AACTTCAACTACAAACTGGC+AGG + chr4_2:69030013-69030032 None:intergenic 40.0%
TGTAGTTGAAGTTCTTGTCG+TGG - chr4_2:69030020-69030039 Msa0618140:CDS 40.0%
GTTCCTCTACTTCCCATATT+TGG + chr4_2:69030083-69030102 None:intergenic 40.0%
! GTTTTCTCCAGCAAGAACAA+TGG - chr4_2:69030181-69030200 Msa0618140:CDS 40.0%
! TCTAAAGCCATTGTTCTTGC+TGG + chr4_2:69030191-69030210 None:intergenic 40.0%
GTTTGTAAACCATTCACCGA+AGG + chr4_2:69030257-69030276 None:intergenic 40.0%
CAGGGAACTGTAAAAAGCAA+CGG - chr4_2:69030329-69030348 Msa0618140:CDS 40.0%
ACTGTAAAAAGCAACGGAAG+AGG - chr4_2:69030335-69030354 Msa0618140:CDS 40.0%
CTGTAAAAAGCAACGGAAGA+GGG - chr4_2:69030336-69030355 Msa0618140:CDS 40.0%
! CAATAAAGCTTTGTCTCGGA+AGG + chr4_2:69030463-69030482 None:intergenic 40.0%
TGATATGGGAAGATGGGATT+TGG - chr4_2:69030564-69030583 Msa0618140:intron 40.0%
TGTCACTCAGATCCACTTAA+GGG + chr4_2:69030921-69030940 None:intergenic 40.0%
TTGTCACTCAGATCCACTTA+AGG + chr4_2:69030922-69030941 None:intergenic 40.0%
CTATGAGGTACAGTTTGGTT+TGG + chr4_2:69030977-69030996 None:intergenic 40.0%
CAAACCAAACTGTACCTCAT+AGG - chr4_2:69030975-69030994 Msa0618140:intron 40.0%
CTCTTGCAGAAAAACCTATG+AGG + chr4_2:69030992-69031011 None:intergenic 40.0%
!! CCCTTTAAGTTGTCAAAACC+AGG + chr4_2:69031093-69031112 None:intergenic 40.0%
ATCCCACATTGTATAGTGCT+AGG - chr4_2:69031174-69031193 Msa0618140:intron 40.0%
!!! GAGATTTTTCAGCGGGTTAT+AGG + chr4_2:69031223-69031242 None:intergenic 40.0%
GGCAATGATTGAAAAGAGAC+TGG + chr4_2:69031296-69031315 None:intergenic 40.0%
CAAAAACCAACGTCTTGCAT+TGG + chr4_2:69031350-69031369 None:intergenic 40.0%
!!! CAATGCAAGACGTTGGTTTT+TGG - chr4_2:69031348-69031367 Msa0618140:intron 40.0%
TACAAGCTTGAGAATGTCCA+AGG - chr4_2:69031389-69031408 Msa0618140:intron 40.0%
! AAGGTTTGCTCTCATGTACA+AGG + chr4_2:69031865-69031884 None:intergenic 40.0%
GATGGAACGTCAAACTTGAA+AGG + chr4_2:69031947-69031966 None:intergenic 40.0%
AGTATGAACCACATCATCTG+GGG + chr4_2:69031969-69031988 None:intergenic 40.0%
CAGTATGAACCACATCATCT+GGG + chr4_2:69031970-69031989 None:intergenic 40.0%
GTTGTCTGCACTTTCAGTAT+TGG + chr4_2:69032242-69032261 None:intergenic 40.0%
CTTATCAGCATCTTTGCCAA+AGG - chr4_2:69032342-69032361 Msa0618140:intron 40.0%
GCATAGTTTCCTTTGTCCTT+TGG + chr4_2:69032361-69032380 None:intergenic 40.0%
AACTGTGTGGTTAAAACTGC+TGG + chr4_2:69032530-69032549 None:intergenic 40.0%
!! GAACTTTGAGATCTTGCATC+AGG + chr4_2:69032553-69032572 None:intergenic 40.0%
TTTCTTACCAGCCAGAAAAG+TGG - chr4_2:69032608-69032627 Msa0618140:intron 40.0%
TCTTCCTTGAAATATCCTGG+TGG + chr4_2:69032714-69032733 None:intergenic 40.0%
TTCTTGGAATTCGTCCCAAT+AGG + chr4_2:69032819-69032838 None:intergenic 40.0%
CGGTGAAATTACCTGTAACT+TGG + chr4_2:69032868-69032887 None:intergenic 40.0%
AGTTACAGGTAATTTCACCG+TGG - chr4_2:69032868-69032887 Msa0618140:CDS 40.0%
! CTTCCTCGTCTCTTTTAATC+AGG - chr4_2:69032945-69032964 Msa0618140:CDS 40.0%
! GTCTCTTTTAATCAGGGCAA+AGG - chr4_2:69032952-69032971 Msa0618140:CDS 40.0%
AAGGATCCTTTGCTTATGCT+TGG - chr4_2:69032971-69032990 Msa0618140:CDS 40.0%
AGGATCCTTTGCTTATGCTT+GGG - chr4_2:69032972-69032991 Msa0618140:CDS 40.0%
AAAGTTCCGAAGAAAGGGAA+AGG - chr4_2:69033004-69033023 Msa0618140:intron 40.0%
AAGTTCCGAAGAAAGGGAAA+GGG - chr4_2:69033005-69033024 Msa0618140:intron 40.0%
TATTCCCCTTTCCCTTTCTT+CGG + chr4_2:69033013-69033032 None:intergenic 40.0%
GTAGCTCCAGAAATCATGTT+TGG + chr4_2:69033120-69033139 None:intergenic 40.0%
! CTTGTTATAGATGCCTCACT+TGG - chr4_2:69033159-69033178 Msa0618140:CDS 40.0%
AATCTTTGAACCCACATGAG+CGG + chr4_2:69033353-69033372 None:intergenic 40.0%
! TGATTTTCCATGGCACTCAA+GGG + chr4_2:69033393-69033412 None:intergenic 40.0%
! TTGATTTTCCATGGCACTCA+AGG + chr4_2:69033394-69033413 None:intergenic 40.0%
GATGTGATCTTAACTTCCCT+TGG - chr4_2:69033474-69033493 Msa0618140:five_prime_UTR 40.0%
TGATCTTAACTTCCCTTGGT+GGG - chr4_2:69033478-69033497 Msa0618140:five_prime_UTR 40.0%
GAAGAAACTCGTAGTAGGGA+TGG - chr4_2:69029210-69029229 Msa0618140:CDS 45.0%
AGAAGAAGGTGGGGTTTGAT+TGG + chr4_2:69029312-69029331 None:intergenic 45.0%
AAAGAGACCATTAAGCCACC+TGG - chr4_2:69029674-69029693 Msa0618140:CDS 45.0%
ATAGAGCAACTCCAAACTCC+AGG + chr4_2:69029695-69029714 None:intergenic 45.0%
CATGCTCTCGTCATTGTCAT+AGG + chr4_2:69029723-69029742 None:intergenic 45.0%
! GGTGGTTCCATTGATAACCA+AGG + chr4_2:69029780-69029799 None:intergenic 45.0%
TCAACTACAAACTGGCAGGA+TGG + chr4_2:69030009-69030028 None:intergenic 45.0%
CGTGGTACATAACGTACTTG+TGG - chr4_2:69030038-69030057 Msa0618140:CDS 45.0%
GAAGTAGAGGAACTTTGCAG+TGG - chr4_2:69030090-69030109 Msa0618140:CDS 45.0%
CTTTGCAGTGGAGCAGAATT+CGG - chr4_2:69030102-69030121 Msa0618140:CDS 45.0%
!! CACCGAAGGCATTTGTGATT+TGG + chr4_2:69030243-69030262 None:intergenic 45.0%
TCACAAATGCCTTCGGTGAA+TGG - chr4_2:69030245-69030264 Msa0618140:CDS 45.0%
!! ATGGAAGCATTTGTCGCGAA+GGG + chr4_2:69030752-69030771 None:intergenic 45.0%
GATCCTGTATCCCAACTTCA+TGG - chr4_2:69030891-69030910 Msa0618140:intron 45.0%
! TAAGGGTGCACCATGAAGTT+GGG + chr4_2:69030904-69030923 None:intergenic 45.0%
! TTAAGGGTGCACCATGAAGT+TGG + chr4_2:69030905-69030924 None:intergenic 45.0%
! GGTTTTTCTGCAAGAGCAGA+AGG - chr4_2:69030996-69031015 Msa0618140:intron 45.0%
TTTCGTGATAGTCGTTGTCC+TGG - chr4_2:69031072-69031091 Msa0618140:intron 45.0%
!!! GACGTTGGTTTTTGGACAGA+TGG - chr4_2:69031356-69031375 Msa0618140:intron 45.0%
CCAGTATGAACCACATCATC+TGG + chr4_2:69031971-69031990 None:intergenic 45.0%
CCAGATGATGTGGTTCATAC+TGG - chr4_2:69031968-69031987 Msa0618140:intron 45.0%
! AAGACAGATAGGTTGAGGGA+GGG + chr4_2:69032027-69032046 None:intergenic 45.0%
! CCTGAAGACAGATAGGTTGA+GGG + chr4_2:69032031-69032050 None:intergenic 45.0%
GTTACAGCCTGAAGACAGAT+AGG + chr4_2:69032038-69032057 None:intergenic 45.0%
GCATCTTTGCCAAAGGACAA+AGG - chr4_2:69032349-69032368 Msa0618140:intron 45.0%
! TGGTAGTGCAGACAAACTAC+CGG + chr4_2:69032443-69032462 None:intergenic 45.0%
ATCTTGCATCAGGAACTGTG+TGG + chr4_2:69032543-69032562 None:intergenic 45.0%
!!! TGAGGAAGCATCCACTTTTC+TGG + chr4_2:69032622-69032641 None:intergenic 45.0%
!! GTAGGTGGTCATGTTGATTC+TGG - chr4_2:69032763-69032782 Msa0618140:intron 45.0%
TGAAAAGGAGGCCAAGTTAC+AGG - chr4_2:69032854-69032873 Msa0618140:CDS 45.0%
TGCCCTGATTAAAAGAGACG+AGG + chr4_2:69032951-69032970 None:intergenic 45.0%
AAGTGCCCAAGCATAAGCAA+AGG + chr4_2:69032980-69032999 None:intergenic 45.0%
AGTTCCGAAGAAAGGGAAAG+GGG - chr4_2:69033006-69033025 Msa0618140:intron 45.0%
AAGGGGAATAACCATGACAG+TGG - chr4_2:69033023-69033042 Msa0618140:intron 45.0%
AATAACCATGACAGTGGCTG+TGG - chr4_2:69033029-69033048 Msa0618140:intron 45.0%
AGCTTCAAATGCACCAAGTG+AGG + chr4_2:69033175-69033194 None:intergenic 45.0%
!! TCACTTGGTGCATTTGAAGC+TGG - chr4_2:69033174-69033193 Msa0618140:CDS 45.0%
! TGGTGCATTTGAAGCTGGTA+TGG - chr4_2:69033179-69033198 Msa0618140:CDS 45.0%
! GCATTTGAAGCTGGTATGGA+TGG - chr4_2:69033183-69033202 Msa0618140:CDS 45.0%
! TTTGAAGCTGGTATGGATGG+CGG - chr4_2:69033186-69033205 Msa0618140:CDS 45.0%
GAATGTTTCTCCGCTCATGT+GGG - chr4_2:69033340-69033359 Msa0618140:five_prime_UTR 45.0%
GTGATCTTAACTTCCCTTGG+TGG - chr4_2:69033477-69033496 Msa0618140:five_prime_UTR 45.0%
CGGGAAGCGAATATTAGGGT+TGG + chr4_2:69029273-69029292 None:intergenic 50.0%
CCAAACTCCAGGTGGCTTAA+TGG + chr4_2:69029684-69029703 None:intergenic 50.0%
CCATTAAGCCACCTGGAGTT+TGG - chr4_2:69029681-69029700 Msa0618140:intron 50.0%
CGTCACCCCTTGGTTATCAA+TGG - chr4_2:69029770-69029789 Msa0618140:intron 50.0%
GTCCGAGTTCTATGTCCATG+TGG - chr4_2:69029933-69029952 Msa0618140:intron 50.0%
GGCCACATGGACATAGAACT+CGG + chr4_2:69029938-69029957 None:intergenic 50.0%
GAGTTCTATGTCCATGTGGC+CGG - chr4_2:69029937-69029956 Msa0618140:intron 50.0%
AGTTCTATGTCCATGTGGCC+GGG - chr4_2:69029938-69029957 Msa0618140:intron 50.0%
CGTACTTGTGGAGTTTCTCG+AGG - chr4_2:69030050-69030069 Msa0618140:CDS 50.0%
ACTTGTGGAGTTTCTCGAGG+TGG - chr4_2:69030053-69030072 Msa0618140:CDS 50.0%
CTTGTGGAGTTTCTCGAGGT+GGG - chr4_2:69030054-69030073 Msa0618140:CDS 50.0%
TTGTGGAGTTTCTCGAGGTG+GGG - chr4_2:69030055-69030074 Msa0618140:CDS 50.0%
GGCCCAAATATGGGAAGTAG+AGG - chr4_2:69030077-69030096 Msa0618140:CDS 50.0%
! AGCAGGCTCTCCACTAGTTT+GGG + chr4_2:69030414-69030433 None:intergenic 50.0%
AAGCAGGCTCTCCACTAGTT+TGG + chr4_2:69030415-69030434 None:intergenic 50.0%
GGCAGAGGGTTATGATAAGC+AGG + chr4_2:69030431-69030450 None:intergenic 50.0%
! TGTCTCGGAAGGGTTTTCGA+GGG + chr4_2:69030452-69030471 None:intergenic 50.0%
! TTGTCTCGGAAGGGTTTTCG+AGG + chr4_2:69030453-69030472 None:intergenic 50.0%
!! GATGGAAGCATTTGTCGCGA+AGG + chr4_2:69030753-69030772 None:intergenic 50.0%
ATGACTCTACAGCTCAGTGC+TGG - chr4_2:69030826-69030845 Msa0618140:intron 50.0%
GCACCATGAAGTTGGGATAC+AGG + chr4_2:69030897-69030916 None:intergenic 50.0%
CTTCATGGTGCACCCTTAAG+TGG - chr4_2:69030906-69030925 Msa0618140:intron 50.0%
! AACTCCTGGAGCATCCAAGT+TGG - chr4_2:69031269-69031288 Msa0618140:intron 50.0%
GAAAAGAGACTGGGCCAACT+TGG + chr4_2:69031286-69031305 None:intergenic 50.0%
!! ACCTCTTTGGGACTCTGTTG+TGG + chr4_2:69031317-69031336 None:intergenic 50.0%
TGAACCACATCATCTGGGGA+TGG + chr4_2:69031965-69031984 None:intergenic 50.0%
! GAAGACAGATAGGTTGAGGG+AGG + chr4_2:69032028-69032047 None:intergenic 50.0%
CCCTCAACCTATCTGTCTTC+AGG - chr4_2:69032028-69032047 Msa0618140:intron 50.0%
GCCTGAAGACAGATAGGTTG+AGG + chr4_2:69032032-69032051 None:intergenic 50.0%
!! GAAGCATCCACTTTTCTGGC+TGG + chr4_2:69032618-69032637 None:intergenic 50.0%
ATATGCCACAGCCACTGTCA+TGG + chr4_2:69033037-69033056 None:intergenic 50.0%
GTTGTTGTGCTTGACTCTCC+TGG - chr4_2:69033078-69033097 Msa0618140:intron 50.0%
GGAATGTTTCTCCGCTCATG+TGG - chr4_2:69033339-69033358 Msa0618140:five_prime_UTR 50.0%
ATGGATTCCCTTGAGTGCCA+TGG - chr4_2:69033383-69033402 Msa0618140:five_prime_UTR 50.0%
GAGCAACTCCAAACTCCAGG+TGG + chr4_2:69029692-69029711 None:intergenic 55.0%
GTTCTATGTCCATGTGGCCG+GGG - chr4_2:69029939-69029958 Msa0618140:intron 55.0%
GAACATTCCACCATGCACCC+CGG + chr4_2:69029959-69029978 None:intergenic 55.0%
TGTGGAGTTTCTCGAGGTGG+GGG - chr4_2:69030056-69030075 Msa0618140:CDS 55.0%
GCAGTGGAGCAGAATTCGGT+AGG - chr4_2:69030106-69030125 Msa0618140:CDS 55.0%
!! GAAGGGTTTTCGAGGGCAGA+GGG + chr4_2:69030445-69030464 None:intergenic 55.0%
GCCACAACAGAGTCCCAAAG+AGG - chr4_2:69031313-69031332 Msa0618140:intron 55.0%
CGTTCCATCCCCAGATGATG+TGG - chr4_2:69031958-69031977 Msa0618140:intron 55.0%
TGGCGTTCTACGTCACCCCT+TGG - chr4_2:69029760-69029779 Msa0618140:intron 60.0%
TCGAGGTGGGGGCCCAAATA+TGG - chr4_2:69030067-69030086 Msa0618140:CDS 60.0%
CGAGGTGGGGGCCCAAATAT+GGG - chr4_2:69030068-69030087 Msa0618140:CDS 60.0%
GGCGCATGTAGAGTGATCGC+TGG - chr4_2:69030127-69030146 Msa0618140:CDS 60.0%
!! GGAAGGGTTTTCGAGGGCAG+AGG + chr4_2:69030446-69030465 None:intergenic 60.0%
TGGGCCAACTTGGATGCTCC+AGG + chr4_2:69031276-69031295 None:intergenic 60.0%
! GCTGGTATGGATGGCGGCAA+AGG - chr4_2:69033192-69033211 Msa0618140:exon 60.0%
GTCCATGTGGCCGGGGTGCA+TGG - chr4_2:69029946-69029965 Msa0618140:intron 70.0%
CACCATGCACCCCGGCCACA+TGG + chr4_2:69029951-69029970 None:intergenic 70.0%
CATGTGGCCGGGGTGCATGG+TGG - chr4_2:69029949-69029968 Msa0618140:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 69029156 69033506 69029156 ID=Msa0618140;Name=Msa0618140
chr4_2 mRNA 69029156 69033506 69029156 ID=Msa0618140-mRNA-1;Parent=Msa0618140;Name=Msa0618140-mRNA-1;_AED=0.16;_eAED=0.16;_QI=298|0.33|0.28|1|1|1|7|0|528
chr4_2 exon 69029156 69029695 69029156 ID=Msa0618140-mRNA-1:exon:19923;Parent=Msa0618140-mRNA-1
chr4_2 exon 69029787 69029855 69029787 ID=Msa0618140-mRNA-1:exon:19922;Parent=Msa0618140-mRNA-1
chr4_2 exon 69029981 69030489 69029981 ID=Msa0618140-mRNA-1:exon:19921;Parent=Msa0618140-mRNA-1
chr4_2 exon 69030610 69030720 69030610 ID=Msa0618140-mRNA-1:exon:19920;Parent=Msa0618140-mRNA-1
chr4_2 exon 69031192 69031287 69031192 ID=Msa0618140-mRNA-1:exon:19919;Parent=Msa0618140-mRNA-1
chr4_2 exon 69032844 69033011 69032844 ID=Msa0618140-mRNA-1:exon:19918;Parent=Msa0618140-mRNA-1
chr4_2 exon 69033115 69033506 69033115 ID=Msa0618140-mRNA-1:exon:19917;Parent=Msa0618140-mRNA-1
chr4_2 five_prime_UTR 69033209 69033506 69033209 ID=Msa0618140-mRNA-1:five_prime_utr;Parent=Msa0618140-mRNA-1
chr4_2 CDS 69033115 69033208 69033115 ID=Msa0618140-mRNA-1:cds;Parent=Msa0618140-mRNA-1
chr4_2 CDS 69032844 69033011 69032844 ID=Msa0618140-mRNA-1:cds;Parent=Msa0618140-mRNA-1
chr4_2 CDS 69031192 69031287 69031192 ID=Msa0618140-mRNA-1:cds;Parent=Msa0618140-mRNA-1
chr4_2 CDS 69030610 69030720 69030610 ID=Msa0618140-mRNA-1:cds;Parent=Msa0618140-mRNA-1
chr4_2 CDS 69029981 69030489 69029981 ID=Msa0618140-mRNA-1:cds;Parent=Msa0618140-mRNA-1
chr4_2 CDS 69029787 69029855 69029787 ID=Msa0618140-mRNA-1:cds;Parent=Msa0618140-mRNA-1
chr4_2 CDS 69029156 69029695 69029156 ID=Msa0618140-mRNA-1:cds;Parent=Msa0618140-mRNA-1
Gene Sequence

>Msa0618140

ATGCCGCGTAAAGTAAACTATGGAATCGATTACTACGACGATGACTATGAGGATTATGATGACTATGATTATGAAGTTGAATCTGAAAATTATGGAGTAGAACAACCTGATACAAAGAAAGAGACCATTAAGCCACCTGGAGTTTGGAGTTGCTCTATTTGCACCTATGACAATGACGAGAGCATGACTTGCTGTGATATTTGTGGCGTTCTACGTCACCCCTTGGTTATCAATGGAACCACCTCCAACATCAACAAAACAGATGGCAGTAACATCTACAAGCTTGAGAATGTCCAAGGAGAATTTCATGAAATTCATAAGGCTTTTAATGCTCAAAGCCATCCCTCTTTAAATATAGATCCTTTCAAGTTTGACGTTCCATCCCCAGATGATGTGGTTCATACTGGCCTACATTCTTCAAAATTGGGTTTGAAAGGTAGCCCTCCCTCAACCTATCTGTCTTCAGGCTACAAAGTTAAAAACTCTAAAGATTCTCGGCTTTCATCAAGCAGCAGAGAGAAGAATGAACTAGAATCCAATACTGAAAGTGCAGACAACTTATCGTCTTTAATGCAAAAGAACAAGCTTTCCAAAAATGTAGAAATTGATCTCGAAACAATTGGTAAAACTTCAAACAGCTTATCAGCATCTTTGCCAAAGGACAAAGGAAACTATGCGAATAAAATAAATTCTTCAAAAATTGGTACAAATGGCATTCAATCAAGCAAAGAAAAGTCCGGTAGTTTGTCTGCACTACCAAAAGTTGAAGAGAGTGATAAACTTAGTTTGTCTTCTAACAAAGACGGAAAGTCTGAAAGTGCTTCCAGCAGTTTTAACCACACAGTTCCTGATGCAAGATCTCAAAGTTCTGATAATACTAATGCTAAGGGACCTCATCAACAAGTTTCTTACCAGCCAGAAAAGTGGATGCTTCCTCAACAATCTGAAGATACGTTGACTCAGTTGAATCTTGCAATTGTTATTACACCTATTGGGACGAATTCCAAGAAAGAAATGCACAAAAATGAAAAGGAGGCCAAGTTACAGGGCAAAGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCCGAAGAAAGGGAAAGGGGAATAACCATGACAGTGGCTGTGGCATATTTTGACACTAAGAAATATCACGTTGTTGTGCTTGACTCTCCTGGTCATAAAGATTTTATCCCAAACATGATTTCTGGAGCTACACAAGCTGATGCTGCAGTTCTTGTTATAGATGCCTCACTTGGTGCATTTGAAGCTGGTATGGATGGCGGCAAAGGACAAACAAGAGAGCATGCACAACTTATTAGAAGTTTCGGTGTAGACCATGTTATAGTTGCAGTAAATAAGATGGATGCTGTGTCATACTCCAAAGACCGATTTGATTTTATAAGACATCAGCTGGGAATGTTTCTCCGCTCATGTGGGTTCAAAGATTCTTCTCTCTCATGGATTCCCTTGAGTGCCATGGAAAATCAAAATTTGGTAGCATCCCCTTCTGATGCTCATTTCAAAACTGGTATGTCACTGATTACTCTAGATGTGATCTTAACTTCCCTTGGTGGGCATTAG

Protein sequence

>Msa0618140

MPRKVNYGIDYYDDDYEDYDDYDYEVESENYGVEQPDTKKETIKPPGVWSCSICTYDNDESMTCCDICGVLRHPLVINGTTSNINKTDGSNIYKLENVQGEFHEIHKAFNAQSHPSLNIDPFKFDVPSPDDVVHTGLHSSKLGLKGSPPSTYLSSGYKVKNSKDSRLSSSSREKNELESNTESADNLSSLMQKNKLSKNVEIDLETIGKTSNSLSASLPKDKGNYANKINSSKIGTNGIQSSKEKSGSLSALPKVEESDKLSLSSNKDGKSESASSSFNHTVPDARSQSSDNTNAKGPHQQVSYQPEKWMLPQQSEDTLTQLNLAIVITPIGTNSKKEMHKNEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFIPNMISGATQADAAVLVIDASLGAFEAGMDGGKGQTREHAQLIRSFGVDHVIVAVNKMDAVSYSKDRFDFIRHQLGMFLRSCGFKDSSLSWIPLSAMENQNLVASPSDAHFKTGMSLITLDVILTSLGGH*