AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126230 MtrunA17_Chr1g0189091 96.875 384 12 0 1 384 1 384 0.0 784
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126230 AT1G32810.2 49.415 342 120 15 1 329 1 302 4.82e-86 282
Msa0126230 AT4G10600.1 55.500 200 62 6 12 211 3 175 3.55e-62 200
Msa0126230 AT4G10600.2 55.500 200 62 6 12 211 3 175 3.55e-62 200

Find 141 sgRNAs with CRISPR-Local

Find 368 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACCCTAATTTACGAAATT+TGG 0.066946 1_3:-55205553 None:intergenic
AACTCCAAATTTCGTAAATT+AGG 0.099475 1_3:+55205549 Msa0126230:five_prime_UTR
CGTTGTTCTCGTTACGTTAA+AGG 0.115003 1_3:+55205769 Msa0126230:CDS
GGAGTTTAATTGAGAAATTT+AGG 0.192388 1_3:-55205532 None:intergenic
TCTCCTTCTTAACCGCATTA+TGG 0.239396 1_3:-55206377 None:intergenic
ACTCCAAATTTCGTAAATTA+GGG 0.255970 1_3:+55205550 Msa0126230:five_prime_UTR
TGTTACGACTTTGGTTGATA+TGG 0.274402 1_3:+55206281 Msa0126230:CDS
GTAATGGAATTGCTTCTTCT+AGG 0.283051 1_3:+55205941 Msa0126230:CDS
TGAATATTCTACATGCTATA+AGG 0.304565 1_3:+55205485 Msa0126230:five_prime_UTR
TCCGACAAAGACGATTTCTT+TGG 0.305436 1_3:+55205894 Msa0126230:CDS
GAAAGTGGAACGAGTAAGTT+AGG 0.313802 1_3:+55206333 Msa0126230:CDS
TACTGAAAACTAAACTTCTT+AGG 0.323755 1_3:-55206126 None:intergenic
GGAAGAGAGGGTTCATGTTC+AGG 0.324299 1_3:+55206014 Msa0126230:CDS
CGCGGAGGCCGTTTAAGCTT+TGG 0.332311 1_3:+55205977 Msa0126230:CDS
GAGTTTAATTGAGAAATTTA+GGG 0.332545 1_3:-55205531 None:intergenic
TGCAAGAGAATGAGGATAAT+GGG 0.355339 1_3:+55206202 Msa0126230:CDS
GTGCAAGAGAATGAGGATAA+TGG 0.365186 1_3:+55206201 Msa0126230:CDS
ACAGATCGCGGCGGCGGTGG+TGG 0.386705 1_3:+55205595 Msa0126230:five_prime_UTR
AGTATAGGGAGTTTCCTTCT+TGG 0.391189 1_3:+55206145 Msa0126230:CDS
CTATCAGAAGTCTTCCTCTT+GGG 0.398794 1_3:-55206588 None:intergenic
GTTCATGTTCAGGGGATGCC+TGG 0.398974 1_3:+55206024 Msa0126230:CDS
TGGGGATCCTGAGTTGTTTG+AGG 0.400920 1_3:+55206047 Msa0126230:CDS
ATATCAACCAAAGTCGTAAC+AGG 0.408197 1_3:-55206279 None:intergenic
GACGATTTCTTTGGAGAGAA+GGG 0.413823 1_3:+55205903 Msa0126230:CDS
TCTATCAGAACTCCTCCTCT+TGG 0.413907 1_3:-55206553 None:intergenic
GGGGATCCTGAGTTGTTTGA+GGG 0.415902 1_3:+55206048 Msa0126230:CDS
TCGTCCGGTGGTGGATCCAT+CGG 0.418211 1_3:-55205643 None:intergenic
TTATGTTGTTGAAATTGAAA+TGG 0.424456 1_3:-55205345 None:intergenic
CTATCAGAACTCCTCCTCTT+GGG 0.428682 1_3:-55206552 None:intergenic
ACGAATGGGTCGACGGTTCA+TGG 0.430074 1_3:+55205662 Msa0126230:CDS
ATGTTCAGGGGATGCCTGGT+GGG 0.430907 1_3:+55206028 Msa0126230:CDS
GGGATCGAGGCAGGGTAAGA+AGG 0.432075 1_3:+55206302 Msa0126230:CDS
TGAGAATGAAAATGATGATA+AGG 0.432231 1_3:+55206176 Msa0126230:CDS
GGTTGATATGGGATCGAGGC+AGG 0.432644 1_3:+55206293 Msa0126230:CDS
AGGATGAATTATCGAAAGAT+AGG 0.433021 1_3:+55206445 Msa0126230:CDS
ATATCAGTCCAAAGCTTAAA+CGG 0.438819 1_3:-55205985 None:intergenic
CACCTGTGATGCAAAACAAT+TGG 0.439631 1_3:+55207330 Msa0126230:CDS
GTTACGACTTTGGTTGATAT+GGG 0.442633 1_3:+55206282 Msa0126230:CDS
TCTATCAGAAGTCTTCCTCT+TGG 0.448862 1_3:-55206589 None:intergenic
TCCAAAGAAATCGTCTTTGT+CGG 0.451016 1_3:-55205895 None:intergenic
GGATCCACCACCGGACGAAT+GGG 0.462593 1_3:+55205648 Msa0126230:CDS
TAATGGAATTGCTTCTTCTA+GGG 0.463404 1_3:+55205942 Msa0126230:CDS
ACTTCACATTCTTCTAAAGC+AGG 0.466657 1_3:+55206636 Msa0126230:CDS
GGCGGTGGTGGGAGAATGAA+AGG 0.468840 1_3:+55205607 Msa0126230:exon
GAAGAGAGGGTTCATGTTCA+GGG 0.473759 1_3:+55206015 Msa0126230:CDS
CTAGGGTTGCGTCGTGTTCG+CGG 0.479128 1_3:+55205959 Msa0126230:CDS
ATGTCATCCTTGAAAACCTT+CGG 0.480712 1_3:-55207373 None:intergenic
TCGACCCATTCGTCCGGTGG+TGG 0.481651 1_3:-55205652 None:intergenic
TGTCCATAATGCGGTTAAGA+AGG 0.482531 1_3:+55206374 Msa0126230:CDS
GAGAATGAGGATAATGGGGC+TGG 0.483034 1_3:+55206207 Msa0126230:CDS
AACTTCTGATAGAGAGGAAG+TGG 0.483065 1_3:+55206491 Msa0126230:CDS
GAAGTCGCCTGTTACGACTT+TGG 0.483282 1_3:+55206272 Msa0126230:CDS
AGAAGGAGAGGAATTTGCTT+AGG 0.485883 1_3:+55206391 Msa0126230:CDS
CATGTTCAGGGGATGCCTGG+TGG 0.491065 1_3:+55206027 Msa0126230:CDS
CGTCCGGTGGTGGATCCATC+GGG 0.500068 1_3:-55205642 None:intergenic
AGACGATTTCTTTGGAGAGA+AGG 0.500714 1_3:+55205902 Msa0126230:CDS
TTCAGCTTCACCTTCTCCGA+TGG 0.501776 1_3:+55205391 Msa0126230:five_prime_UTR
TAGGAGTGGGAAGAAGAAGC+GGG 0.503873 1_3:+55206464 Msa0126230:CDS
GCTTTGGACTGATATACCTA+TGG 0.510874 1_3:+55205993 Msa0126230:CDS
TGTTCAGGGGATGCCTGGTG+GGG 0.518582 1_3:+55206029 Msa0126230:CDS
TACAGAACAGATCGCGGCGG+CGG 0.520072 1_3:+55205589 Msa0126230:five_prime_UTR
TGGATCCACCACCGGACGAA+TGG 0.523746 1_3:+55205647 Msa0126230:CDS
AGAATGAGGATAATGGGGCT+GGG 0.526709 1_3:+55206208 Msa0126230:CDS
TAAGGGTGTGCAAGAGAATG+AGG 0.527932 1_3:+55206194 Msa0126230:CDS
GAGAATGAAAATGATGATAA+GGG 0.528388 1_3:+55206177 Msa0126230:CDS
TTTCGACGATGGCGAAGAGA+TGG 0.529901 1_3:+55205711 Msa0126230:CDS
AGAACAGATCGCGGCGGCGG+TGG 0.533283 1_3:+55205592 Msa0126230:five_prime_UTR
CCGCAGTTGTGGAAATGTAC+CGG 0.535180 1_3:+55206096 Msa0126230:CDS
ATAGGAGTGGGAAGAAGAAG+CGG 0.535286 1_3:+55206463 Msa0126230:CDS
CGCAGTTGTGGAAATGTACC+GGG 0.536087 1_3:+55206097 Msa0126230:CDS
TTCTCATTCACATACCAAGA+AGG 0.540056 1_3:-55206159 None:intergenic
TTACTCGAATGAACAACAAA+CGG 0.541633 1_3:-55206414 None:intergenic
AAAGTGGAACGAGTAAGTTA+GGG 0.541809 1_3:+55206334 Msa0126230:CDS
CTGCGCAACCTCAGTTTCCT+CGG 0.542649 1_3:-55205857 None:intergenic
CGATTTCTTTGGAGAGAAGG+GGG 0.545317 1_3:+55205905 Msa0126230:CDS
CAGATCGCGGCGGCGGTGGT+GGG 0.548454 1_3:+55205596 Msa0126230:five_prime_UTR
GAACCGTCGACCCATTCGTC+CGG 0.551144 1_3:-55205658 None:intergenic
GGGAATGGTAATAGGAGTAA+TGG 0.555778 1_3:+55205925 Msa0126230:CDS
AATTATCGAAAGATAGGAGT+GGG 0.559178 1_3:+55206451 Msa0126230:CDS
GAAAGAGGTTAATAATATGT+TGG 0.560178 1_3:+55206248 Msa0126230:CDS
GAGAGGATGTAGATCACAAG+AGG 0.563845 1_3:+55206610 Msa0126230:CDS
ATCTATCTATCCATCGGAGA+AGG 0.564374 1_3:-55205401 None:intergenic
GGATCGAGGCAGGGTAAGAA+GGG 0.565722 1_3:+55206303 Msa0126230:CDS
GAATGAGGATAATGGGGCTG+GGG 0.567370 1_3:+55206209 Msa0126230:CDS
CCGTCGACCCATTCGTCCGG+TGG 0.567949 1_3:-55205655 None:intergenic
GAGGAGGAGTTCTGATAGAG+AGG 0.569321 1_3:+55206557 Msa0126230:CDS
GAGGAAGACTTCTGATAGAG+AGG 0.570954 1_3:+55206593 Msa0126230:CDS
CTGATATACCTATGGAAGAG+AGG 0.573991 1_3:+55206001 Msa0126230:CDS
CACACACACATGCACGCGAT+CGG 0.574833 1_3:+55205427 Msa0126230:five_prime_UTR
AGAAATTGCGTTGTGATGCG+AGG 0.576600 1_3:-55205463 None:intergenic
TATTGTTCTCCGCTCCGACA+CGG 0.579173 1_3:-55205834 None:intergenic
GTGTTTATCTATCTATCCAT+CGG 0.579842 1_3:-55205407 None:intergenic
TTATGGAGACAGAGGTCCGA+AGG 0.580485 1_3:+55207357 Msa0126230:CDS
ACATGAACCCTCTCTTCCAT+AGG 0.580837 1_3:-55206009 None:intergenic
TGAGTTGTTTGAGGGGAAGA+CGG 0.583516 1_3:+55206056 Msa0126230:CDS
GAAATTGCGTTGTGATGCGA+GGG 0.588164 1_3:-55205462 None:intergenic
GGGATCAACATCCTCTCTGT+CGG 0.589180 1_3:-55206532 None:intergenic
GTCTTCCCCTCAAACAACTC+AGG 0.589740 1_3:-55206054 None:intergenic
ACGATTTCTTTGGAGAGAAG+GGG 0.591672 1_3:+55205904 Msa0126230:CDS
TGATATACCTATGGAAGAGA+GGG 0.595227 1_3:+55206002 Msa0126230:CDS
GGTTAAAACTTCTGATAGAG+AGG 0.600935 1_3:+55206485 Msa0126230:CDS
CCACCGGACGAATGGGTCGA+CGG 0.603852 1_3:+55205655 Msa0126230:CDS
GTTGATATGGGATCGAGGCA+GGG 0.604108 1_3:+55206294 Msa0126230:CDS
AACAACTCAGGATCCCCACC+AGG 0.607787 1_3:-55206042 None:intergenic
TGCGGTGTCAATTTCGACGA+TGG 0.608647 1_3:+55205700 Msa0126230:CDS
GCGGTGGTGGGAGAATGAAA+GGG 0.611312 1_3:+55205608 Msa0126230:exon
GTTGTTCATTCGAGTAAGCG+TGG 0.611407 1_3:+55206420 Msa0126230:CDS
TCGCCCGATGGATCCACCAC+CGG 0.611818 1_3:+55205639 Msa0126230:CDS
AGGAAGTGGATATCAAGAAG+AGG 0.623620 1_3:+55206505 Msa0126230:CDS
AGTGCGATGAATGTGACGTA+TGG 0.624264 1_3:+55205737 Msa0126230:CDS
GTGCGATGAATGTGACGTAT+GGG 0.630907 1_3:+55205738 Msa0126230:CDS
TTGTTCATTCGAGTAAGCGT+GGG 0.632548 1_3:+55206421 Msa0126230:CDS
ATGGGTCGACGGTTCATGGA+CGG 0.634086 1_3:+55205666 Msa0126230:CDS
TCATTCGAGTAAGCGTGGGA+AGG 0.635505 1_3:+55206425 Msa0126230:CDS
GGGATCCTGAGTTGTTTGAG+GGG 0.640575 1_3:+55206049 Msa0126230:CDS
AGGGCGATCGAATCGCCCGA+TGG 0.641334 1_3:+55205627 Msa0126230:CDS
GAGAGGATGTTGATCCCAAG+AGG 0.642176 1_3:+55206538 Msa0126230:CDS
GAGAGGATGTTAATCCCAAG+AGG 0.644865 1_3:+55206574 Msa0126230:CDS
GAAGAGGACTTCCGACAGAG+AGG 0.646032 1_3:+55206521 Msa0126230:CDS
GAATTATCGAAAGATAGGAG+TGG 0.658009 1_3:+55206450 Msa0126230:CDS
AGGATGTTGATCCCAAGAGG+AGG 0.658931 1_3:+55206541 Msa0126230:CDS
ATAATGCGGTTAAGAAGGAG+AGG 0.660714 1_3:+55206379 Msa0126230:CDS
CTTTGGTTGATATGGGATCG+AGG 0.663648 1_3:+55206289 Msa0126230:CDS
AGGATGTAGATCACAAGAGG+AGG 0.664606 1_3:+55206613 Msa0126230:CDS
TGGAACGAGTAAGTTAGGGA+AGG 0.667234 1_3:+55206338 Msa0126230:CDS
GAAGAACAACCGTGTCGGAG+CGG 0.673126 1_3:+55205825 Msa0126230:CDS
AAGAGAGGGTTCATGTTCAG+GGG 0.674862 1_3:+55206016 Msa0126230:CDS
AAACTTCTTAGGAACATACC+CGG 0.677501 1_3:-55206115 None:intergenic
GAACAATACCGAGGAAACTG+AGG 0.686125 1_3:+55205849 Msa0126230:CDS
GGTCGACGGTTCATGGACGG+TGG 0.689534 1_3:+55205669 Msa0126230:CDS
GCAAGAGAATGAGGATAATG+GGG 0.699092 1_3:+55206203 Msa0126230:CDS
AAAGCGAAGAACAACCGTGT+CGG 0.702603 1_3:+55205820 Msa0126230:CDS
TGGACGGTGGACTGTATCTG+CGG 0.707808 1_3:+55205682 Msa0126230:CDS
GGGTTGCGTCGTGTTCGCGG+AGG 0.708193 1_3:+55205962 Msa0126230:CDS
CCGGTACATTTCCACAACTG+CGG 0.719309 1_3:-55206096 None:intergenic
TAAGAACTTAAAAGACACAG+TGG 0.722598 1_3:+55207411 Msa0126230:CDS
ATTGCTTACAGAACAGATCG+CGG 0.723740 1_3:+55205583 Msa0126230:five_prime_UTR
TATGCCGCGTGTCCATAATG+CGG 0.725117 1_3:+55206365 Msa0126230:CDS
TTAACCGCATTATGGACACG+CGG 0.737117 1_3:-55206369 None:intergenic
CGGAGCGGAGAACAATACCG+AGG 0.757334 1_3:+55205840 Msa0126230:CDS
GCTTACAGAACAGATCGCGG+CGG 0.787541 1_3:+55205586 Msa0126230:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATCATGCAATAATTAT+CGG + chr1_3:55206796-55206815 Msa0126230:intron 15.0%
!! TAACTAGTAATAATTGTAAT+AGG - chr1_3:55207167-55207186 None:intergenic 15.0%
!! AATAATCATGCAATAATTAT+CGG + chr1_3:55206796-55206815 Msa0126230:intron 15.0%
!! TAACTAGTAATAATTGTAAT+AGG - chr1_3:55207167-55207186 None:intergenic 15.0%
!! TTATGTTGTTGAAATTGAAA+TGG - chr1_3:55205348-55205367 None:intergenic 20.0%
!! GAGTTTAATTGAGAAATTTA+GGG - chr1_3:55205534-55205553 None:intergenic 20.0%
!! ATAAGTTACATCTATTATCT+AGG - chr1_3:55206759-55206778 None:intergenic 20.0%
!! AGATAATAGATGTAACTTAT+AGG + chr1_3:55206759-55206778 Msa0126230:intron 20.0%
!! ATAATCATGCAATAATTATC+GGG + chr1_3:55206797-55206816 Msa0126230:intron 20.0%
!!! TGTTCATATAAGTTGAAATT+AGG + chr1_3:55206838-55206857 Msa0126230:intron 20.0%
!!! TAAATCACATTTTGTAATTG+TGG - chr1_3:55207031-55207050 None:intergenic 20.0%
!! ACAATTATTACTAGTTACTA+TGG + chr1_3:55207170-55207189 Msa0126230:intron 20.0%
!! TTATGTTGTTGAAATTGAAA+TGG - chr1_3:55205348-55205367 None:intergenic 20.0%
!! GAGTTTAATTGAGAAATTTA+GGG - chr1_3:55205534-55205553 None:intergenic 20.0%
!! ATAAGTTACATCTATTATCT+AGG - chr1_3:55206759-55206778 None:intergenic 20.0%
!! AGATAATAGATGTAACTTAT+AGG + chr1_3:55206759-55206778 Msa0126230:intron 20.0%
!! ATAATCATGCAATAATTATC+GGG + chr1_3:55206797-55206816 Msa0126230:intron 20.0%
!!! TGTTCATATAAGTTGAAATT+AGG + chr1_3:55206838-55206857 Msa0126230:intron 20.0%
!!! TAAATCACATTTTGTAATTG+TGG - chr1_3:55207031-55207050 None:intergenic 20.0%
!! ACAATTATTACTAGTTACTA+TGG + chr1_3:55207170-55207189 Msa0126230:intron 20.0%
!! AAACAAACTAGTGTGTTTTT+CGG - chr1_3:55205372-55205391 None:intergenic 25.0%
! TGAATATTCTACATGCTATA+AGG + chr1_3:55205485-55205504 Msa0126230:five_prime_UTR 25.0%
! GGAGTTTAATTGAGAAATTT+AGG - chr1_3:55205535-55205554 None:intergenic 25.0%
! AACTCCAAATTTCGTAAATT+AGG + chr1_3:55205549-55205568 Msa0126230:five_prime_UTR 25.0%
! ACTCCAAATTTCGTAAATTA+GGG + chr1_3:55205550-55205569 Msa0126230:five_prime_UTR 25.0%
! AAACCCTAATTTACGAAATT+TGG - chr1_3:55205556-55205575 None:intergenic 25.0%
! TACTGAAAACTAAACTTCTT+AGG - chr1_3:55206129-55206148 None:intergenic 25.0%
!!! AGAAGTTTAGTTTTCAGTAT+AGG + chr1_3:55206130-55206149 Msa0126230:CDS 25.0%
!!! GAAGTTTAGTTTTCAGTATA+GGG + chr1_3:55206131-55206150 Msa0126230:CDS 25.0%
! TGAGAATGAAAATGATGATA+AGG + chr1_3:55206176-55206195 Msa0126230:CDS 25.0%
! GAGAATGAAAATGATGATAA+GGG + chr1_3:55206177-55206196 Msa0126230:CDS 25.0%
! GAAAGAGGTTAATAATATGT+TGG + chr1_3:55206248-55206267 Msa0126230:CDS 25.0%
!!! AAGTTTTGTCGTTCTTAATT+TGG + chr1_3:55206708-55206727 Msa0126230:intron 25.0%
! CTAGTAATAATTGTAATAGG+AGG - chr1_3:55207164-55207183 None:intergenic 25.0%
!! AAACAAACTAGTGTGTTTTT+CGG - chr1_3:55205372-55205391 None:intergenic 25.0%
! TGAATATTCTACATGCTATA+AGG + chr1_3:55205485-55205504 Msa0126230:five_prime_UTR 25.0%
! GGAGTTTAATTGAGAAATTT+AGG - chr1_3:55205535-55205554 None:intergenic 25.0%
! AACTCCAAATTTCGTAAATT+AGG + chr1_3:55205549-55205568 Msa0126230:five_prime_UTR 25.0%
! ACTCCAAATTTCGTAAATTA+GGG + chr1_3:55205550-55205569 Msa0126230:five_prime_UTR 25.0%
! AAACCCTAATTTACGAAATT+TGG - chr1_3:55205556-55205575 None:intergenic 25.0%
! TACTGAAAACTAAACTTCTT+AGG - chr1_3:55206129-55206148 None:intergenic 25.0%
!!! AGAAGTTTAGTTTTCAGTAT+AGG + chr1_3:55206130-55206149 Msa0126230:CDS 25.0%
!!! GAAGTTTAGTTTTCAGTATA+GGG + chr1_3:55206131-55206150 Msa0126230:CDS 25.0%
! TGAGAATGAAAATGATGATA+AGG + chr1_3:55206176-55206195 Msa0126230:CDS 25.0%
! GAGAATGAAAATGATGATAA+GGG + chr1_3:55206177-55206196 Msa0126230:CDS 25.0%
! GAAAGAGGTTAATAATATGT+TGG + chr1_3:55206248-55206267 Msa0126230:CDS 25.0%
!!! AAGTTTTGTCGTTCTTAATT+TGG + chr1_3:55206708-55206727 Msa0126230:intron 25.0%
! CTAGTAATAATTGTAATAGG+AGG - chr1_3:55207164-55207183 None:intergenic 25.0%
! AACAAACTAGTGTGTTTTTC+GGG - chr1_3:55205371-55205390 None:intergenic 30.0%
GTGTTTATCTATCTATCCAT+CGG - chr1_3:55205410-55205429 None:intergenic 30.0%
TAATGGAATTGCTTCTTCTA+GGG + chr1_3:55205942-55205961 Msa0126230:CDS 30.0%
ATATCAGTCCAAAGCTTAAA+CGG - chr1_3:55205988-55206007 None:intergenic 30.0%
TTACTCGAATGAACAACAAA+CGG - chr1_3:55206417-55206436 None:intergenic 30.0%
AGGATGAATTATCGAAAGAT+AGG + chr1_3:55206445-55206464 Msa0126230:CDS 30.0%
AATTATCGAAAGATAGGAGT+GGG + chr1_3:55206451-55206470 Msa0126230:CDS 30.0%
TGTGGTTTCATTAACTTAGT+GGG - chr1_3:55207013-55207032 None:intergenic 30.0%
TTGTGGTTTCATTAACTTAG+TGG - chr1_3:55207014-55207033 None:intergenic 30.0%
! TAGTCAATATGTTGATTGCT+AGG + chr1_3:55207049-55207068 Msa0126230:intron 30.0%
ATGCTAGTAATCAAAATGAG+AGG - chr1_3:55207303-55207322 None:intergenic 30.0%
! GCAAAACAATTGGCATTTTA+TGG + chr1_3:55207340-55207359 Msa0126230:CDS 30.0%
TAAGAACTTAAAAGACACAG+TGG + chr1_3:55207411-55207430 Msa0126230:CDS 30.0%
! AACAAACTAGTGTGTTTTTC+GGG - chr1_3:55205371-55205390 None:intergenic 30.0%
GTGTTTATCTATCTATCCAT+CGG - chr1_3:55205410-55205429 None:intergenic 30.0%
TAATGGAATTGCTTCTTCTA+GGG + chr1_3:55205942-55205961 Msa0126230:CDS 30.0%
ATATCAGTCCAAAGCTTAAA+CGG - chr1_3:55205988-55206007 None:intergenic 30.0%
TTACTCGAATGAACAACAAA+CGG - chr1_3:55206417-55206436 None:intergenic 30.0%
AGGATGAATTATCGAAAGAT+AGG + chr1_3:55206445-55206464 Msa0126230:CDS 30.0%
AATTATCGAAAGATAGGAGT+GGG + chr1_3:55206451-55206470 Msa0126230:CDS 30.0%
TGTGGTTTCATTAACTTAGT+GGG - chr1_3:55207013-55207032 None:intergenic 30.0%
TTGTGGTTTCATTAACTTAG+TGG - chr1_3:55207014-55207033 None:intergenic 30.0%
! TAGTCAATATGTTGATTGCT+AGG + chr1_3:55207049-55207068 Msa0126230:intron 30.0%
ATGCTAGTAATCAAAATGAG+AGG - chr1_3:55207303-55207322 None:intergenic 30.0%
! GCAAAACAATTGGCATTTTA+TGG + chr1_3:55207340-55207359 Msa0126230:CDS 30.0%
TAAGAACTTAAAAGACACAG+TGG + chr1_3:55207411-55207430 Msa0126230:CDS 30.0%
TCCAAAGAAATCGTCTTTGT+CGG - chr1_3:55205898-55205917 None:intergenic 35.0%
! GTAATGGAATTGCTTCTTCT+AGG + chr1_3:55205941-55205960 Msa0126230:CDS 35.0%
TGATATACCTATGGAAGAGA+GGG + chr1_3:55206002-55206021 Msa0126230:CDS 35.0%
AAACTTCTTAGGAACATACC+CGG - chr1_3:55206118-55206137 None:intergenic 35.0%
TTCTCATTCACATACCAAGA+AGG - chr1_3:55206162-55206181 None:intergenic 35.0%
TGCAAGAGAATGAGGATAAT+GGG + chr1_3:55206202-55206221 Msa0126230:CDS 35.0%
ATATCAACCAAAGTCGTAAC+AGG - chr1_3:55206282-55206301 None:intergenic 35.0%
! TGTTACGACTTTGGTTGATA+TGG + chr1_3:55206281-55206300 Msa0126230:CDS 35.0%
! GTTACGACTTTGGTTGATAT+GGG + chr1_3:55206282-55206301 Msa0126230:CDS 35.0%
!!! AAGAAGGGTTTTAAGGAAAG+TGG + chr1_3:55206318-55206337 Msa0126230:CDS 35.0%
AAAGTGGAACGAGTAAGTTA+GGG + chr1_3:55206334-55206353 Msa0126230:CDS 35.0%
GAATTATCGAAAGATAGGAG+TGG + chr1_3:55206450-55206469 Msa0126230:CDS 35.0%
GGTTAAAACTTCTGATAGAG+AGG + chr1_3:55206485-55206504 Msa0126230:CDS 35.0%
!! ACTTCACATTCTTCTAAAGC+AGG + chr1_3:55206636-55206655 Msa0126230:CDS 35.0%
GATAAATTAGACGAGCGTTT+CGG - chr1_3:55206883-55206902 None:intergenic 35.0%
!!! ACACGTTTTAATTGAGAAGC+TGG + chr1_3:55206946-55206965 Msa0126230:intron 35.0%
!! AATTGTTTTGCATCACAGGT+GGG - chr1_3:55207331-55207350 None:intergenic 35.0%
ATGTCATCCTTGAAAACCTT+CGG - chr1_3:55207376-55207395 None:intergenic 35.0%
!! AGGTTTTCAAGGATGACATT+CGG + chr1_3:55207377-55207396 Msa0126230:CDS 35.0%
TCCAAAGAAATCGTCTTTGT+CGG - chr1_3:55205898-55205917 None:intergenic 35.0%
! GTAATGGAATTGCTTCTTCT+AGG + chr1_3:55205941-55205960 Msa0126230:CDS 35.0%
TGATATACCTATGGAAGAGA+GGG + chr1_3:55206002-55206021 Msa0126230:CDS 35.0%
AAACTTCTTAGGAACATACC+CGG - chr1_3:55206118-55206137 None:intergenic 35.0%
TTCTCATTCACATACCAAGA+AGG - chr1_3:55206162-55206181 None:intergenic 35.0%
TGCAAGAGAATGAGGATAAT+GGG + chr1_3:55206202-55206221 Msa0126230:CDS 35.0%
ATATCAACCAAAGTCGTAAC+AGG - chr1_3:55206282-55206301 None:intergenic 35.0%
! TGTTACGACTTTGGTTGATA+TGG + chr1_3:55206281-55206300 Msa0126230:CDS 35.0%
! GTTACGACTTTGGTTGATAT+GGG + chr1_3:55206282-55206301 Msa0126230:CDS 35.0%
!!! AAGAAGGGTTTTAAGGAAAG+TGG + chr1_3:55206318-55206337 Msa0126230:CDS 35.0%
AAAGTGGAACGAGTAAGTTA+GGG + chr1_3:55206334-55206353 Msa0126230:CDS 35.0%
GAATTATCGAAAGATAGGAG+TGG + chr1_3:55206450-55206469 Msa0126230:CDS 35.0%
GGTTAAAACTTCTGATAGAG+AGG + chr1_3:55206485-55206504 Msa0126230:CDS 35.0%
!! ACTTCACATTCTTCTAAAGC+AGG + chr1_3:55206636-55206655 Msa0126230:CDS 35.0%
GATAAATTAGACGAGCGTTT+CGG - chr1_3:55206883-55206902 None:intergenic 35.0%
!!! ACACGTTTTAATTGAGAAGC+TGG + chr1_3:55206946-55206965 Msa0126230:intron 35.0%
!! AATTGTTTTGCATCACAGGT+GGG - chr1_3:55207331-55207350 None:intergenic 35.0%
ATGTCATCCTTGAAAACCTT+CGG - chr1_3:55207376-55207395 None:intergenic 35.0%
!! AGGTTTTCAAGGATGACATT+CGG + chr1_3:55207377-55207396 Msa0126230:CDS 35.0%
ATCTATCTATCCATCGGAGA+AGG - chr1_3:55205404-55205423 None:intergenic 40.0%
ATTGCTTACAGAACAGATCG+CGG + chr1_3:55205583-55205602 Msa0126230:five_prime_UTR 40.0%
CGTTGTTCTCGTTACGTTAA+AGG + chr1_3:55205769-55205788 Msa0126230:CDS 40.0%
TCCGACAAAGACGATTTCTT+TGG + chr1_3:55205894-55205913 Msa0126230:CDS 40.0%
! AGACGATTTCTTTGGAGAGA+AGG + chr1_3:55205902-55205921 Msa0126230:CDS 40.0%
! GACGATTTCTTTGGAGAGAA+GGG + chr1_3:55205903-55205922 Msa0126230:CDS 40.0%
! ACGATTTCTTTGGAGAGAAG+GGG + chr1_3:55205904-55205923 Msa0126230:CDS 40.0%
GGGAATGGTAATAGGAGTAA+TGG + chr1_3:55205925-55205944 Msa0126230:CDS 40.0%
! GCTTTGGACTGATATACCTA+TGG + chr1_3:55205993-55206012 Msa0126230:CDS 40.0%
CTGATATACCTATGGAAGAG+AGG + chr1_3:55206001-55206020 Msa0126230:CDS 40.0%
AGTATAGGGAGTTTCCTTCT+TGG + chr1_3:55206145-55206164 Msa0126230:CDS 40.0%
GTGCAAGAGAATGAGGATAA+TGG + chr1_3:55206201-55206220 Msa0126230:CDS 40.0%
GCAAGAGAATGAGGATAATG+GGG + chr1_3:55206203-55206222 Msa0126230:CDS 40.0%
GAAAGTGGAACGAGTAAGTT+AGG + chr1_3:55206333-55206352 Msa0126230:CDS 40.0%
TGTCCATAATGCGGTTAAGA+AGG + chr1_3:55206374-55206393 Msa0126230:CDS 40.0%
TCTCCTTCTTAACCGCATTA+TGG - chr1_3:55206380-55206399 None:intergenic 40.0%
ATAATGCGGTTAAGAAGGAG+AGG + chr1_3:55206379-55206398 Msa0126230:CDS 40.0%
! AGAAGGAGAGGAATTTGCTT+AGG + chr1_3:55206391-55206410 Msa0126230:CDS 40.0%
TTGTTCATTCGAGTAAGCGT+GGG + chr1_3:55206421-55206440 Msa0126230:CDS 40.0%
AACTTCTGATAGAGAGGAAG+TGG + chr1_3:55206491-55206510 Msa0126230:CDS 40.0%
AGGAAGTGGATATCAAGAAG+AGG + chr1_3:55206505-55206524 Msa0126230:CDS 40.0%
CTATCAGAAGTCTTCCTCTT+GGG - chr1_3:55206591-55206610 None:intergenic 40.0%
TCTATCAGAAGTCTTCCTCT+TGG - chr1_3:55206592-55206611 None:intergenic 40.0%
!! CAATTGTTTTGCATCACAGG+TGG - chr1_3:55207332-55207351 None:intergenic 40.0%
CACCTGTGATGCAAAACAAT+TGG + chr1_3:55207330-55207349 Msa0126230:CDS 40.0%
!! TGCCAATTGTTTTGCATCAC+AGG - chr1_3:55207335-55207354 None:intergenic 40.0%
! TTGGCATTTTATGGAGACAG+AGG + chr1_3:55207349-55207368 Msa0126230:CDS 40.0%
ATCTATCTATCCATCGGAGA+AGG - chr1_3:55205404-55205423 None:intergenic 40.0%
ATTGCTTACAGAACAGATCG+CGG + chr1_3:55205583-55205602 Msa0126230:five_prime_UTR 40.0%
CGTTGTTCTCGTTACGTTAA+AGG + chr1_3:55205769-55205788 Msa0126230:CDS 40.0%
TCCGACAAAGACGATTTCTT+TGG + chr1_3:55205894-55205913 Msa0126230:CDS 40.0%
! AGACGATTTCTTTGGAGAGA+AGG + chr1_3:55205902-55205921 Msa0126230:CDS 40.0%
! GACGATTTCTTTGGAGAGAA+GGG + chr1_3:55205903-55205922 Msa0126230:CDS 40.0%
! ACGATTTCTTTGGAGAGAAG+GGG + chr1_3:55205904-55205923 Msa0126230:CDS 40.0%
GGGAATGGTAATAGGAGTAA+TGG + chr1_3:55205925-55205944 Msa0126230:CDS 40.0%
! GCTTTGGACTGATATACCTA+TGG + chr1_3:55205993-55206012 Msa0126230:CDS 40.0%
CTGATATACCTATGGAAGAG+AGG + chr1_3:55206001-55206020 Msa0126230:CDS 40.0%
AGTATAGGGAGTTTCCTTCT+TGG + chr1_3:55206145-55206164 Msa0126230:CDS 40.0%
GTGCAAGAGAATGAGGATAA+TGG + chr1_3:55206201-55206220 Msa0126230:CDS 40.0%
GCAAGAGAATGAGGATAATG+GGG + chr1_3:55206203-55206222 Msa0126230:CDS 40.0%
GAAAGTGGAACGAGTAAGTT+AGG + chr1_3:55206333-55206352 Msa0126230:CDS 40.0%
TGTCCATAATGCGGTTAAGA+AGG + chr1_3:55206374-55206393 Msa0126230:CDS 40.0%
TCTCCTTCTTAACCGCATTA+TGG - chr1_3:55206380-55206399 None:intergenic 40.0%
ATAATGCGGTTAAGAAGGAG+AGG + chr1_3:55206379-55206398 Msa0126230:CDS 40.0%
! AGAAGGAGAGGAATTTGCTT+AGG + chr1_3:55206391-55206410 Msa0126230:CDS 40.0%
TTGTTCATTCGAGTAAGCGT+GGG + chr1_3:55206421-55206440 Msa0126230:CDS 40.0%
AACTTCTGATAGAGAGGAAG+TGG + chr1_3:55206491-55206510 Msa0126230:CDS 40.0%
AGGAAGTGGATATCAAGAAG+AGG + chr1_3:55206505-55206524 Msa0126230:CDS 40.0%
CTATCAGAAGTCTTCCTCTT+GGG - chr1_3:55206591-55206610 None:intergenic 40.0%
TCTATCAGAAGTCTTCCTCT+TGG - chr1_3:55206592-55206611 None:intergenic 40.0%
!! CAATTGTTTTGCATCACAGG+TGG - chr1_3:55207332-55207351 None:intergenic 40.0%
CACCTGTGATGCAAAACAAT+TGG + chr1_3:55207330-55207349 Msa0126230:CDS 40.0%
!! TGCCAATTGTTTTGCATCAC+AGG - chr1_3:55207335-55207354 None:intergenic 40.0%
! TTGGCATTTTATGGAGACAG+AGG + chr1_3:55207349-55207368 Msa0126230:CDS 40.0%
GAAATTGCGTTGTGATGCGA+GGG - chr1_3:55205465-55205484 None:intergenic 45.0%
AGAAATTGCGTTGTGATGCG+AGG - chr1_3:55205466-55205485 None:intergenic 45.0%
AGTGCGATGAATGTGACGTA+TGG + chr1_3:55205737-55205756 Msa0126230:CDS 45.0%
GTGCGATGAATGTGACGTAT+GGG + chr1_3:55205738-55205757 Msa0126230:CDS 45.0%
AAAGCGAAGAACAACCGTGT+CGG + chr1_3:55205820-55205839 Msa0126230:CDS 45.0%
GAACAATACCGAGGAAACTG+AGG + chr1_3:55205849-55205868 Msa0126230:CDS 45.0%
! CGATTTCTTTGGAGAGAAGG+GGG + chr1_3:55205905-55205924 Msa0126230:CDS 45.0%
AGAGAAGGGGGAATGGTAAT+AGG + chr1_3:55205917-55205936 Msa0126230:CDS 45.0%
ACATGAACCCTCTCTTCCAT+AGG - chr1_3:55206012-55206031 None:intergenic 45.0%
GAAGAGAGGGTTCATGTTCA+GGG + chr1_3:55206015-55206034 Msa0126230:CDS 45.0%
AAGAGAGGGTTCATGTTCAG+GGG + chr1_3:55206016-55206035 Msa0126230:CDS 45.0%
TGAGTTGTTTGAGGGGAAGA+CGG + chr1_3:55206056-55206075 Msa0126230:CDS 45.0%
!!! AAGACGGTGTCGTCGATTTT+CGG + chr1_3:55206072-55206091 Msa0126230:CDS 45.0%
! TAAGGGTGTGCAAGAGAATG+AGG + chr1_3:55206194-55206213 Msa0126230:CDS 45.0%
!! AGAATGAGGATAATGGGGCT+GGG + chr1_3:55206208-55206227 Msa0126230:CDS 45.0%
! GCTTTTGTCGTTGTCGAAAG+AGG + chr1_3:55206233-55206252 Msa0126230:CDS 45.0%
! CTTTGGTTGATATGGGATCG+AGG + chr1_3:55206289-55206308 Msa0126230:CDS 45.0%
! GCAGGGTAAGAAGGGTTTTA+AGG + chr1_3:55206311-55206330 Msa0126230:CDS 45.0%
TGGAACGAGTAAGTTAGGGA+AGG + chr1_3:55206338-55206357 Msa0126230:CDS 45.0%
TTAACCGCATTATGGACACG+CGG - chr1_3:55206372-55206391 None:intergenic 45.0%
GTTGTTCATTCGAGTAAGCG+TGG + chr1_3:55206420-55206439 Msa0126230:CDS 45.0%
ATAGGAGTGGGAAGAAGAAG+CGG + chr1_3:55206463-55206482 Msa0126230:CDS 45.0%
CTATCAGAACTCCTCCTCTT+GGG - chr1_3:55206555-55206574 None:intergenic 45.0%
TCTATCAGAACTCCTCCTCT+TGG - chr1_3:55206556-55206575 None:intergenic 45.0%
GAGAGGATGTTAATCCCAAG+AGG + chr1_3:55206574-55206593 Msa0126230:CDS 45.0%
GAGGAAGACTTCTGATAGAG+AGG + chr1_3:55206593-55206612 Msa0126230:CDS 45.0%
GAGAGGATGTAGATCACAAG+AGG + chr1_3:55206610-55206629 Msa0126230:CDS 45.0%
AGGATGTAGATCACAAGAGG+AGG + chr1_3:55206613-55206632 Msa0126230:CDS 45.0%
CGACAGGGATATGGATTTCA+AGG - chr1_3:55207120-55207139 None:intergenic 45.0%
TGAAGACAGAGATCTCGACA+GGG - chr1_3:55207135-55207154 None:intergenic 45.0%
ATGAAGACAGAGATCTCGAC+AGG - chr1_3:55207136-55207155 None:intergenic 45.0%
ATCTCGTTTCATTGTGCCTG+TGG + chr1_3:55207205-55207224 Msa0126230:intron 45.0%
TCTCGTTTCATTGTGCCTGT+GGG + chr1_3:55207206-55207225 Msa0126230:intron 45.0%
! ATGCATCAAGTTGCAAGACG+TGG - chr1_3:55207259-55207278 None:intergenic 45.0%
GAAATTGCGTTGTGATGCGA+GGG - chr1_3:55205465-55205484 None:intergenic 45.0%
AGAAATTGCGTTGTGATGCG+AGG - chr1_3:55205466-55205485 None:intergenic 45.0%
AGTGCGATGAATGTGACGTA+TGG + chr1_3:55205737-55205756 Msa0126230:CDS 45.0%
GTGCGATGAATGTGACGTAT+GGG + chr1_3:55205738-55205757 Msa0126230:CDS 45.0%
AAAGCGAAGAACAACCGTGT+CGG + chr1_3:55205820-55205839 Msa0126230:CDS 45.0%
GAACAATACCGAGGAAACTG+AGG + chr1_3:55205849-55205868 Msa0126230:CDS 45.0%
! CGATTTCTTTGGAGAGAAGG+GGG + chr1_3:55205905-55205924 Msa0126230:CDS 45.0%
AGAGAAGGGGGAATGGTAAT+AGG + chr1_3:55205917-55205936 Msa0126230:CDS 45.0%
ACATGAACCCTCTCTTCCAT+AGG - chr1_3:55206012-55206031 None:intergenic 45.0%
GAAGAGAGGGTTCATGTTCA+GGG + chr1_3:55206015-55206034 Msa0126230:CDS 45.0%
AAGAGAGGGTTCATGTTCAG+GGG + chr1_3:55206016-55206035 Msa0126230:CDS 45.0%
TGAGTTGTTTGAGGGGAAGA+CGG + chr1_3:55206056-55206075 Msa0126230:CDS 45.0%
!!! AAGACGGTGTCGTCGATTTT+CGG + chr1_3:55206072-55206091 Msa0126230:CDS 45.0%
! TAAGGGTGTGCAAGAGAATG+AGG + chr1_3:55206194-55206213 Msa0126230:CDS 45.0%
!! AGAATGAGGATAATGGGGCT+GGG + chr1_3:55206208-55206227 Msa0126230:CDS 45.0%
! GCTTTTGTCGTTGTCGAAAG+AGG + chr1_3:55206233-55206252 Msa0126230:CDS 45.0%
! CTTTGGTTGATATGGGATCG+AGG + chr1_3:55206289-55206308 Msa0126230:CDS 45.0%
! GCAGGGTAAGAAGGGTTTTA+AGG + chr1_3:55206311-55206330 Msa0126230:CDS 45.0%
TGGAACGAGTAAGTTAGGGA+AGG + chr1_3:55206338-55206357 Msa0126230:CDS 45.0%
TTAACCGCATTATGGACACG+CGG - chr1_3:55206372-55206391 None:intergenic 45.0%
GTTGTTCATTCGAGTAAGCG+TGG + chr1_3:55206420-55206439 Msa0126230:CDS 45.0%
ATAGGAGTGGGAAGAAGAAG+CGG + chr1_3:55206463-55206482 Msa0126230:CDS 45.0%
CTATCAGAACTCCTCCTCTT+GGG - chr1_3:55206555-55206574 None:intergenic 45.0%
TCTATCAGAACTCCTCCTCT+TGG - chr1_3:55206556-55206575 None:intergenic 45.0%
GAGAGGATGTTAATCCCAAG+AGG + chr1_3:55206574-55206593 Msa0126230:CDS 45.0%
GAGGAAGACTTCTGATAGAG+AGG + chr1_3:55206593-55206612 Msa0126230:CDS 45.0%
GAGAGGATGTAGATCACAAG+AGG + chr1_3:55206610-55206629 Msa0126230:CDS 45.0%
AGGATGTAGATCACAAGAGG+AGG + chr1_3:55206613-55206632 Msa0126230:CDS 45.0%
CGACAGGGATATGGATTTCA+AGG - chr1_3:55207120-55207139 None:intergenic 45.0%
TGAAGACAGAGATCTCGACA+GGG - chr1_3:55207135-55207154 None:intergenic 45.0%
ATGAAGACAGAGATCTCGAC+AGG - chr1_3:55207136-55207155 None:intergenic 45.0%
ATCTCGTTTCATTGTGCCTG+TGG + chr1_3:55207205-55207224 Msa0126230:intron 45.0%
TCTCGTTTCATTGTGCCTGT+GGG + chr1_3:55207206-55207225 Msa0126230:intron 45.0%
! ATGCATCAAGTTGCAAGACG+TGG - chr1_3:55207259-55207278 None:intergenic 45.0%
TTCAGCTTCACCTTCTCCGA+TGG + chr1_3:55205391-55205410 Msa0126230:five_prime_UTR 50.0%
! TGCGGTGTCAATTTCGACGA+TGG + chr1_3:55205700-55205719 Msa0126230:CDS 50.0%
TTTCGACGATGGCGAAGAGA+TGG + chr1_3:55205711-55205730 Msa0126230:CDS 50.0%
TATTGTTCTCCGCTCCGACA+CGG - chr1_3:55205837-55205856 None:intergenic 50.0%
! TCTTTGGAGAGAAGGGGGAA+TGG + chr1_3:55205910-55205929 Msa0126230:CDS 50.0%
GGAAGAGAGGGTTCATGTTC+AGG + chr1_3:55206014-55206033 Msa0126230:CDS 50.0%
TGGGGATCCTGAGTTGTTTG+AGG + chr1_3:55206047-55206066 Msa0126230:CDS 50.0%
GGGGATCCTGAGTTGTTTGA+GGG + chr1_3:55206048-55206067 Msa0126230:CDS 50.0%
GGGATCCTGAGTTGTTTGAG+GGG + chr1_3:55206049-55206068 Msa0126230:CDS 50.0%
GTCTTCCCCTCAAACAACTC+AGG - chr1_3:55206057-55206076 None:intergenic 50.0%
CCGGTACATTTCCACAACTG+CGG - chr1_3:55206099-55206118 None:intergenic 50.0%
CCGCAGTTGTGGAAATGTAC+CGG + chr1_3:55206096-55206115 Msa0126230:CDS 50.0%
CGCAGTTGTGGAAATGTACC+GGG + chr1_3:55206097-55206116 Msa0126230:CDS 50.0%
!! GAGAATGAGGATAATGGGGC+TGG + chr1_3:55206207-55206226 Msa0126230:CDS 50.0%
!! GAATGAGGATAATGGGGCTG+GGG + chr1_3:55206209-55206228 Msa0126230:CDS 50.0%
GAAGTCGCCTGTTACGACTT+TGG + chr1_3:55206272-55206291 Msa0126230:CDS 50.0%
GTTGATATGGGATCGAGGCA+GGG + chr1_3:55206294-55206313 Msa0126230:CDS 50.0%
TATGCCGCGTGTCCATAATG+CGG + chr1_3:55206365-55206384 Msa0126230:CDS 50.0%
TCATTCGAGTAAGCGTGGGA+AGG + chr1_3:55206425-55206444 Msa0126230:CDS 50.0%
TAGGAGTGGGAAGAAGAAGC+GGG + chr1_3:55206464-55206483 Msa0126230:CDS 50.0%
GGGATCAACATCCTCTCTGT+CGG - chr1_3:55206535-55206554 None:intergenic 50.0%
GAGAGGATGTTGATCCCAAG+AGG + chr1_3:55206538-55206557 Msa0126230:CDS 50.0%
AGGATGTTGATCCCAAGAGG+AGG + chr1_3:55206541-55206560 Msa0126230:CDS 50.0%
! GAGGAGGAGTTCTGATAGAG+AGG + chr1_3:55206557-55206576 Msa0126230:CDS 50.0%
CAGAGATCTCGACAGGGATA+TGG - chr1_3:55207129-55207148 None:intergenic 50.0%
GGGCGAACGTTGTCAACAAT+TGG + chr1_3:55207226-55207245 Msa0126230:intron 50.0%
TTATGGAGACAGAGGTCCGA+AGG + chr1_3:55207357-55207376 Msa0126230:CDS 50.0%
! CAGAGGTCCGAAGGTTTTCA+AGG + chr1_3:55207366-55207385 Msa0126230:CDS 50.0%
TTCAGCTTCACCTTCTCCGA+TGG + chr1_3:55205391-55205410 Msa0126230:five_prime_UTR 50.0%
! TGCGGTGTCAATTTCGACGA+TGG + chr1_3:55205700-55205719 Msa0126230:CDS 50.0%
TTTCGACGATGGCGAAGAGA+TGG + chr1_3:55205711-55205730 Msa0126230:CDS 50.0%
TATTGTTCTCCGCTCCGACA+CGG - chr1_3:55205837-55205856 None:intergenic 50.0%
! TCTTTGGAGAGAAGGGGGAA+TGG + chr1_3:55205910-55205929 Msa0126230:CDS 50.0%
GGAAGAGAGGGTTCATGTTC+AGG + chr1_3:55206014-55206033 Msa0126230:CDS 50.0%
TGGGGATCCTGAGTTGTTTG+AGG + chr1_3:55206047-55206066 Msa0126230:CDS 50.0%
GGGGATCCTGAGTTGTTTGA+GGG + chr1_3:55206048-55206067 Msa0126230:CDS 50.0%
GGGATCCTGAGTTGTTTGAG+GGG + chr1_3:55206049-55206068 Msa0126230:CDS 50.0%
GTCTTCCCCTCAAACAACTC+AGG - chr1_3:55206057-55206076 None:intergenic 50.0%
CCGGTACATTTCCACAACTG+CGG - chr1_3:55206099-55206118 None:intergenic 50.0%
CCGCAGTTGTGGAAATGTAC+CGG + chr1_3:55206096-55206115 Msa0126230:CDS 50.0%
CGCAGTTGTGGAAATGTACC+GGG + chr1_3:55206097-55206116 Msa0126230:CDS 50.0%
!! GAGAATGAGGATAATGGGGC+TGG + chr1_3:55206207-55206226 Msa0126230:CDS 50.0%
!! GAATGAGGATAATGGGGCTG+GGG + chr1_3:55206209-55206228 Msa0126230:CDS 50.0%
GAAGTCGCCTGTTACGACTT+TGG + chr1_3:55206272-55206291 Msa0126230:CDS 50.0%
GTTGATATGGGATCGAGGCA+GGG + chr1_3:55206294-55206313 Msa0126230:CDS 50.0%
TATGCCGCGTGTCCATAATG+CGG + chr1_3:55206365-55206384 Msa0126230:CDS 50.0%
TCATTCGAGTAAGCGTGGGA+AGG + chr1_3:55206425-55206444 Msa0126230:CDS 50.0%
TAGGAGTGGGAAGAAGAAGC+GGG + chr1_3:55206464-55206483 Msa0126230:CDS 50.0%
GGGATCAACATCCTCTCTGT+CGG - chr1_3:55206535-55206554 None:intergenic 50.0%
GAGAGGATGTTGATCCCAAG+AGG + chr1_3:55206538-55206557 Msa0126230:CDS 50.0%
AGGATGTTGATCCCAAGAGG+AGG + chr1_3:55206541-55206560 Msa0126230:CDS 50.0%
! GAGGAGGAGTTCTGATAGAG+AGG + chr1_3:55206557-55206576 Msa0126230:CDS 50.0%
CAGAGATCTCGACAGGGATA+TGG - chr1_3:55207129-55207148 None:intergenic 50.0%
GGGCGAACGTTGTCAACAAT+TGG + chr1_3:55207226-55207245 Msa0126230:intron 50.0%
TTATGGAGACAGAGGTCCGA+AGG + chr1_3:55207357-55207376 Msa0126230:CDS 50.0%
! CAGAGGTCCGAAGGTTTTCA+AGG + chr1_3:55207366-55207385 Msa0126230:CDS 50.0%
CACACACACATGCACGCGAT+CGG + chr1_3:55205427-55205446 Msa0126230:five_prime_UTR 55.0%
GCTTACAGAACAGATCGCGG+CGG + chr1_3:55205586-55205605 Msa0126230:five_prime_UTR 55.0%
!! GCGGTGGTGGGAGAATGAAA+GGG + chr1_3:55205608-55205627 Msa0126230:exon 55.0%
ACGAATGGGTCGACGGTTCA+TGG + chr1_3:55205662-55205681 Msa0126230:CDS 55.0%
ATGGGTCGACGGTTCATGGA+CGG + chr1_3:55205666-55205685 Msa0126230:CDS 55.0%
!! TGGACGGTGGACTGTATCTG+CGG + chr1_3:55205682-55205701 Msa0126230:CDS 55.0%
GAAGAACAACCGTGTCGGAG+CGG + chr1_3:55205825-55205844 Msa0126230:CDS 55.0%
CTGCGCAACCTCAGTTTCCT+CGG - chr1_3:55205860-55205879 None:intergenic 55.0%
GTTCATGTTCAGGGGATGCC+TGG + chr1_3:55206024-55206043 Msa0126230:CDS 55.0%
ATGTTCAGGGGATGCCTGGT+GGG + chr1_3:55206028-55206047 Msa0126230:CDS 55.0%
AACAACTCAGGATCCCCACC+AGG - chr1_3:55206045-55206064 None:intergenic 55.0%
! CGATTTTCGGACCGCAGTTG+TGG + chr1_3:55206085-55206104 Msa0126230:CDS 55.0%
! GGTTGATATGGGATCGAGGC+AGG + chr1_3:55206293-55206312 Msa0126230:CDS 55.0%
GGATCGAGGCAGGGTAAGAA+GGG + chr1_3:55206303-55206322 Msa0126230:CDS 55.0%
GAAGAGGACTTCCGACAGAG+AGG + chr1_3:55206521-55206540 Msa0126230:CDS 55.0%
TGTTGACAACGTTCGCCCAC+AGG - chr1_3:55207224-55207243 None:intergenic 55.0%
CACACACACATGCACGCGAT+CGG + chr1_3:55205427-55205446 Msa0126230:five_prime_UTR 55.0%
GCTTACAGAACAGATCGCGG+CGG + chr1_3:55205586-55205605 Msa0126230:five_prime_UTR 55.0%
!! GCGGTGGTGGGAGAATGAAA+GGG + chr1_3:55205608-55205627 Msa0126230:exon 55.0%
ACGAATGGGTCGACGGTTCA+TGG + chr1_3:55205662-55205681 Msa0126230:CDS 55.0%
ATGGGTCGACGGTTCATGGA+CGG + chr1_3:55205666-55205685 Msa0126230:CDS 55.0%
!! TGGACGGTGGACTGTATCTG+CGG + chr1_3:55205682-55205701 Msa0126230:CDS 55.0%
GAAGAACAACCGTGTCGGAG+CGG + chr1_3:55205825-55205844 Msa0126230:CDS 55.0%
CTGCGCAACCTCAGTTTCCT+CGG - chr1_3:55205860-55205879 None:intergenic 55.0%
GTTCATGTTCAGGGGATGCC+TGG + chr1_3:55206024-55206043 Msa0126230:CDS 55.0%
ATGTTCAGGGGATGCCTGGT+GGG + chr1_3:55206028-55206047 Msa0126230:CDS 55.0%
AACAACTCAGGATCCCCACC+AGG - chr1_3:55206045-55206064 None:intergenic 55.0%
! CGATTTTCGGACCGCAGTTG+TGG + chr1_3:55206085-55206104 Msa0126230:CDS 55.0%
! GGTTGATATGGGATCGAGGC+AGG + chr1_3:55206293-55206312 Msa0126230:CDS 55.0%
GGATCGAGGCAGGGTAAGAA+GGG + chr1_3:55206303-55206322 Msa0126230:CDS 55.0%
GAAGAGGACTTCCGACAGAG+AGG + chr1_3:55206521-55206540 Msa0126230:CDS 55.0%
TGTTGACAACGTTCGCCCAC+AGG - chr1_3:55207224-55207243 None:intergenic 55.0%
TACAGAACAGATCGCGGCGG+CGG + chr1_3:55205589-55205608 Msa0126230:five_prime_UTR 60.0%
!! GGCGGTGGTGGGAGAATGAA+AGG + chr1_3:55205607-55205626 Msa0126230:exon 60.0%
!! TCGTCCGGTGGTGGATCCAT+CGG - chr1_3:55205646-55205665 None:intergenic 60.0%
TGGATCCACCACCGGACGAA+TGG + chr1_3:55205647-55205666 Msa0126230:CDS 60.0%
GGATCCACCACCGGACGAAT+GGG + chr1_3:55205648-55205667 Msa0126230:CDS 60.0%
GAACCGTCGACCCATTCGTC+CGG - chr1_3:55205661-55205680 None:intergenic 60.0%
CGGAGCGGAGAACAATACCG+AGG + chr1_3:55205840-55205859 Msa0126230:CDS 60.0%
CTAGGGTTGCGTCGTGTTCG+CGG + chr1_3:55205959-55205978 Msa0126230:CDS 60.0%
CGCGGAGGCCGTTTAAGCTT+TGG + chr1_3:55205977-55205996 Msa0126230:CDS 60.0%
CATGTTCAGGGGATGCCTGG+TGG + chr1_3:55206027-55206046 Msa0126230:CDS 60.0%
TGTTCAGGGGATGCCTGGTG+GGG + chr1_3:55206029-55206048 Msa0126230:CDS 60.0%
GGGATCGAGGCAGGGTAAGA+AGG + chr1_3:55206302-55206321 Msa0126230:CDS 60.0%
TACAGAACAGATCGCGGCGG+CGG + chr1_3:55205589-55205608 Msa0126230:five_prime_UTR 60.0%
!! GGCGGTGGTGGGAGAATGAA+AGG + chr1_3:55205607-55205626 Msa0126230:exon 60.0%
!! TCGTCCGGTGGTGGATCCAT+CGG - chr1_3:55205646-55205665 None:intergenic 60.0%
TGGATCCACCACCGGACGAA+TGG + chr1_3:55205647-55205666 Msa0126230:CDS 60.0%
GGATCCACCACCGGACGAAT+GGG + chr1_3:55205648-55205667 Msa0126230:CDS 60.0%
GAACCGTCGACCCATTCGTC+CGG - chr1_3:55205661-55205680 None:intergenic 60.0%
CGGAGCGGAGAACAATACCG+AGG + chr1_3:55205840-55205859 Msa0126230:CDS 60.0%
CTAGGGTTGCGTCGTGTTCG+CGG + chr1_3:55205959-55205978 Msa0126230:CDS 60.0%
CGCGGAGGCCGTTTAAGCTT+TGG + chr1_3:55205977-55205996 Msa0126230:CDS 60.0%
CATGTTCAGGGGATGCCTGG+TGG + chr1_3:55206027-55206046 Msa0126230:CDS 60.0%
TGTTCAGGGGATGCCTGGTG+GGG + chr1_3:55206029-55206048 Msa0126230:CDS 60.0%
GGGATCGAGGCAGGGTAAGA+AGG + chr1_3:55206302-55206321 Msa0126230:CDS 60.0%
AGGGCGATCGAATCGCCCGA+TGG + chr1_3:55205627-55205646 Msa0126230:CDS 65.0%
TCGCCCGATGGATCCACCAC+CGG + chr1_3:55205639-55205658 Msa0126230:CDS 65.0%
!! CGTCCGGTGGTGGATCCATC+GGG - chr1_3:55205645-55205664 None:intergenic 65.0%
TCGACCCATTCGTCCGGTGG+TGG - chr1_3:55205655-55205674 None:intergenic 65.0%
CCACCGGACGAATGGGTCGA+CGG + chr1_3:55205655-55205674 Msa0126230:CDS 65.0%
GGTCGACGGTTCATGGACGG+TGG + chr1_3:55205669-55205688 Msa0126230:CDS 65.0%
AGGGCGATCGAATCGCCCGA+TGG + chr1_3:55205627-55205646 Msa0126230:CDS 65.0%
TCGCCCGATGGATCCACCAC+CGG + chr1_3:55205639-55205658 Msa0126230:CDS 65.0%
!! CGTCCGGTGGTGGATCCATC+GGG - chr1_3:55205645-55205664 None:intergenic 65.0%
TCGACCCATTCGTCCGGTGG+TGG - chr1_3:55205655-55205674 None:intergenic 65.0%
CCACCGGACGAATGGGTCGA+CGG + chr1_3:55205655-55205674 Msa0126230:CDS 65.0%
GGTCGACGGTTCATGGACGG+TGG + chr1_3:55205669-55205688 Msa0126230:CDS 65.0%
AGAACAGATCGCGGCGGCGG+TGG + chr1_3:55205592-55205611 Msa0126230:five_prime_UTR 70.0%
CCGTCGACCCATTCGTCCGG+TGG - chr1_3:55205658-55205677 None:intergenic 70.0%
GGGTTGCGTCGTGTTCGCGG+AGG + chr1_3:55205962-55205981 Msa0126230:CDS 70.0%
AGAACAGATCGCGGCGGCGG+TGG + chr1_3:55205592-55205611 Msa0126230:five_prime_UTR 70.0%
CCGTCGACCCATTCGTCCGG+TGG - chr1_3:55205658-55205677 None:intergenic 70.0%
GGGTTGCGTCGTGTTCGCGG+AGG + chr1_3:55205962-55205981 Msa0126230:CDS 70.0%
ACAGATCGCGGCGGCGGTGG+TGG + chr1_3:55205595-55205614 Msa0126230:five_prime_UTR 75.0%
CAGATCGCGGCGGCGGTGGT+GGG + chr1_3:55205596-55205615 Msa0126230:five_prime_UTR 75.0%
ACAGATCGCGGCGGCGGTGG+TGG + chr1_3:55205595-55205614 Msa0126230:five_prime_UTR 75.0%
CAGATCGCGGCGGCGGTGGT+GGG + chr1_3:55205596-55205615 Msa0126230:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55205338 55207435 55205338 ID=Msa0126230;Name=Msa0126230
chr1_3 mRNA 55205338 55207435 55205338 ID=Msa0126230-mRNA-1;Parent=Msa0126230;Name=Msa0126230-mRNA-1;_AED=0.00;_eAED=0.00;_QI=284|1|0.5|1|1|1|2|0|384
chr1_3 exon 55205338 55206657 55205338 ID=Msa0126230-mRNA-1:exon:17089;Parent=Msa0126230-mRNA-1
chr1_3 exon 55207320 55207435 55207320 ID=Msa0126230-mRNA-1:exon:17090;Parent=Msa0126230-mRNA-1
chr1_3 five_prime_UTR 55205338 55205621 55205338 ID=Msa0126230-mRNA-1:five_prime_utr;Parent=Msa0126230-mRNA-1
chr1_3 CDS 55205622 55206657 55205622 ID=Msa0126230-mRNA-1:cds;Parent=Msa0126230-mRNA-1
chr1_3 CDS 55207320 55207435 55207320 ID=Msa0126230-mRNA-1:cds;Parent=Msa0126230-mRNA-1
Gene Sequence

>Msa0126230

ATGAAAGGGCGATCGAATCGCCCGATGGATCCACCACCGGACGAATGGGTCGACGGTTCATGGACGGTGGACTGTATCTGCGGTGTCAATTTCGACGATGGCGAAGAGATGGTAAAGTGCGATGAATGTGACGTATGGGTTCACACGCGTTGTTCTCGTTACGTTAAAGGTGATGACATGTTCGCGTGTGACAAGTGTAAAGCGAAGAACAACCGTGTCGGAGCGGAGAACAATACCGAGGAAACTGAGGTTGCGCAGTTTCTTGTCGAGCTTCCGACAAAGACGATTTCTTTGGAGAGAAGGGGGAATGGTAATAGGAGTAATGGAATTGCTTCTTCTAGGGTTGCGTCGTGTTCGCGGAGGCCGTTTAAGCTTTGGACTGATATACCTATGGAAGAGAGGGTTCATGTTCAGGGGATGCCTGGTGGGGATCCTGAGTTGTTTGAGGGGAAGACGGTGTCGTCGATTTTCGGACCGCAGTTGTGGAAATGTACCGGGTATGTTCCTAAGAAGTTTAGTTTTCAGTATAGGGAGTTTCCTTCTTGGTATGTGAATGAGAATGAAAATGATGATAAGGGTGTGCAAGAGAATGAGGATAATGGGGCTGGGGTGCTTTTGTCGTTGTCGAAAGAGGTTAATAATATGTTGGCGAAGTCGCCTGTTACGACTTTGGTTGATATGGGATCGAGGCAGGGTAAGAAGGGTTTTAAGGAAAGTGGAACGAGTAAGTTAGGGAAGGATCATATGCCGCGTGTCCATAATGCGGTTAAGAAGGAGAGGAATTTGCTTAGGCCGTTTGTTGTTCATTCGAGTAAGCGTGGGAAGGATGAATTATCGAAAGATAGGAGTGGGAAGAAGAAGCGGGTTAAAACTTCTGATAGAGAGGAAGTGGATATCAAGAAGAGGACTTCCGACAGAGAGGATGTTGATCCCAAGAGGAGGAGTTCTGATAGAGAGGATGTTAATCCCAAGAGGAAGACTTCTGATAGAGAGGATGTAGATCACAAGAGGAGGACTTCACATTCTTCTAAAGCAGCATTTACACCCACCTGTGATGCAAAACAATTGGCATTTTATGGAGACAGAGGTCCGAAGGTTTTCAAGGATGACATTCGGAGCATAAAGAATAAGAACTTAAAAGACACAGTGGTT

Protein sequence

>Msa0126230

MKGRSNRPMDPPPDEWVDGSWTVDCICGVNFDDGEEMVKCDECDVWVHTRCSRYVKGDDMFACDKCKAKNNRVGAENNTEETEVAQFLVELPTKTISLERRGNGNRSNGIASSRVASCSRRPFKLWTDIPMEERVHVQGMPGGDPELFEGKTVSSIFGPQLWKCTGYVPKKFSFQYREFPSWYVNENENDDKGVQENEDNGAGVLLSLSKEVNNMLAKSPVTTLVDMGSRQGKKGFKESGTSKLGKDHMPRVHNAVKKERNLLRPFVVHSSKRGKDELSKDRSGKKKRVKTSDREEVDIKKRTSDREDVDPKRRSSDREDVNPKRKTSDREDVDHKRRTSHSSKAAFTPTCDAKQLAFYGDRGPKVFKDDIRSIKNKNLKDTVV