AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0138210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138210 MtrunA17_Chr1g0211131 97.572 1071 25 1 34 1103 1 1071 0.0 2149
Msa0138210 MtrunA17_Chr2g0282211 40.271 663 367 10 442 1097 279 919 7.87e-150 471
Msa0138210 MtrunA17_Chr2g0282211 46.948 213 109 3 125 335 42 252 1.96e-43 171
Msa0138210 MtrunA17_Chr4g0047301 37.764 662 349 13 461 1102 296 914 1.42e-136 436
Msa0138210 MtrunA17_Chr4g0047301 39.286 252 140 4 125 375 42 281 3.42e-45 177
Msa0138210 MtrunA17_Chr1g0198021 52.364 275 128 2 826 1097 107 381 2.39e-94 306
Msa0138210 MtrunA17_Chr2g0317631 52.000 275 129 2 826 1097 276 550 1.96e-90 304
Msa0138210 MtrunA17_Chr8g0376201 49.462 279 134 4 827 1098 161 439 1.39e-87 290
Msa0138210 MtrunA17_Chr8g0360171 53.650 274 124 2 827 1097 472 745 9.10e-85 291
Msa0138210 MtrunA17_Chr7g0233611 55.310 226 95 3 830 1050 8 232 8.82e-79 261
Msa0138210 MtrunA17_Chr4g0045101 44.128 281 145 4 830 1099 7 286 8.72e-75 250
Msa0138210 MtrunA17_Chr8g0376111 53.363 223 98 2 830 1047 13 234 5.65e-74 248
Msa0138210 MtrunA17_Chr2g0317641 61.017 177 67 1 881 1055 1 177 1.59e-73 241
Msa0138210 MtrunA17_Chr7g0233631 52.679 224 100 3 829 1047 7 229 2.63e-72 243
Msa0138210 MtrunA17_Chr7g0222941 58.046 174 71 1 826 997 60 233 1.88e-64 218
Msa0138210 MtrunA17_Chr2g0285321 45.581 215 112 3 881 1092 1 213 2.57e-50 177
Msa0138210 MtrunA17_Chr2g0317611 46.108 167 71 3 778 935 18 174 8.12e-42 151
Msa0138210 MtrunA17_Chr2g0317621 45.517 145 78 1 955 1098 24 168 4.41e-37 139
Msa0138210 MtrunA17_Chr4g0001491 43.506 154 77 2 867 1020 153 296 1.49e-33 131
Msa0138210 MtrunA17_Chr4g0009054 25.994 327 209 10 519 842 8 304 5.65e-16 80.5
Msa0138210 MtrunA17_Chr8g0369311 28.906 128 81 3 849 976 54 171 3.15e-11 63.9
Msa0138210 MtrunA17_Chr8g0378601 32.258 124 72 4 855 977 25 137 4.25e-11 62.8
Msa0138210 MtrunA17_Chr5g0432831 29.508 122 76 3 855 976 4 115 5.10e-11 62.0
Msa0138210 MtrunA17_Chr3g0108261 29.508 122 76 3 855 976 4 115 5.30e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0138210 AT2G16920.1 61.217 1101 357 18 36 1102 37 1101 0.0 1259
Msa0138210 AT2G16920.2 61.217 1101 357 18 36 1102 37 1101 0.0 1259
Msa0138210 AT2G33770.1 41.033 658 320 16 455 1094 292 899 5.50e-140 445
Msa0138210 AT2G33770.1 40.196 204 120 2 137 339 53 255 1.06e-42 169
Msa0138210 AT3G15355.1 51.292 271 126 2 827 1091 305 575 1.01e-84 287
Msa0138210 AT1G53025.1 56.277 231 99 1 827 1055 244 474 2.70e-84 284
Msa0138210 AT1G53025.2 56.277 231 99 1 827 1055 244 474 4.72e-84 284
Msa0138210 AT1G53023.1 50.833 240 94 3 827 1053 21 249 2.52e-73 246
Msa0138210 AT5G41700.5 29.508 122 76 3 855 976 4 115 7.90e-11 62.0
Msa0138210 AT5G41700.2 29.508 122 76 3 855 976 4 115 7.90e-11 62.0
Msa0138210 AT5G41700.1 29.508 122 76 3 855 976 4 115 7.90e-11 62.0

Find 320 sgRNAs with CRISPR-Local

Find 534 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTGTTGCTTTGTAATTT+AGG 0.135993 1_3:+70992665 None:intergenic
TTCCCTTCCTCATACAAATT+AGG 0.168220 1_3:+70986986 None:intergenic
TTGGATCCGTGTTTGTTTAT+TGG 0.182040 1_3:-70990966 Msa0138210:CDS
AAACCAACAGAGGTTGAATT+TGG 0.194483 1_3:+70986118 None:intergenic
ACCCGTTGCCCTGGGTAATA+AGG 0.207009 1_3:+70991084 None:intergenic
AGAATATTGTTCTTCGAAAT+TGG 0.212011 1_3:+70991123 None:intergenic
TGAAGGATGCTAGAAGATTT+TGG 0.214780 1_3:+70986908 None:intergenic
CAAAGCTTTCCTCTTTCTTC+CGG 0.214790 1_3:+70990479 None:intergenic
CTAAAGACTTGAAGCGTATC+AGG 0.215293 1_3:-70991281 Msa0138210:CDS
TATTCAAAAGTCGTTGTTAA+TGG 0.233522 1_3:-70985692 Msa0138210:three_prime_UTR
ATTACATGCAGGTCGTTAAT+AGG 0.237695 1_3:-70988264 Msa0138210:intron
TCCCTTCCTCATACAAATTA+GGG 0.254645 1_3:+70986987 None:intergenic
TGCCATTGATGGTGACAATT+TGG 0.265712 1_3:-70988020 Msa0138210:CDS
CAGAAGATGCTGTTTCTGTT+TGG 0.281002 1_3:+70989990 None:intergenic
CCGTTAGACCATTACTATAT+TGG 0.295218 1_3:-70987845 Msa0138210:CDS
TTTGGACTCTGTTCCTCAGC+TGG 0.295961 1_3:+70990904 None:intergenic
CAGGCAGAGGCAATGAAGTA+TGG 0.300360 1_3:-70986934 Msa0138210:CDS
AAAGCTTTCCTCTTTCTTCC+GGG 0.303565 1_3:+70990480 None:intergenic
TCCTGTTGCTTTGTAATTTA+GGG 0.310620 1_3:+70992666 None:intergenic
AGGAAAAGTTGATGATGTTT+TGG 0.310783 1_3:-70991217 Msa0138210:CDS
TACGCTCATAAGCTTCTTAC+TGG 0.312837 1_3:-70985562 Msa0138210:three_prime_UTR
CAGTTATTATAGGGCCATTT+GGG 0.323204 1_3:-70987243 Msa0138210:CDS
TGGAGTTCTCAGACCTCTCT+TGG 0.325000 1_3:-70989955 Msa0138210:CDS
TTCAGAGTAACAACCGAAAA+TGG 0.326059 1_3:-70987453 Msa0138210:intron
TCGTGTCACTTAGTGAAGTT+GGG 0.334164 1_3:-70986060 Msa0138210:CDS
TTGGCCCTTACCCGTTGCCC+TGG 0.334977 1_3:+70991075 None:intergenic
GCTGGGGCAGCAGAAGAATA+TGG 0.335778 1_3:+70990922 None:intergenic
GGAAAGAAGGAAAACAAAAT+TGG 0.347555 1_3:+70985601 None:intergenic
AAATGGGAATAAAGATACTA+TGG 0.348062 1_3:-70990677 Msa0138210:CDS
AAGCAGGAAAACGAAGAAAA+TGG 0.352886 1_3:-70990034 Msa0138210:CDS
GCAGTTATTATAGGGCCATT+TGG 0.353534 1_3:-70987244 Msa0138210:CDS
TGCTCATGCAAATTGGCAAT+TGG 0.355555 1_3:-70990857 Msa0138210:CDS
CACACAAGCTGTCCGCTCTT+TGG 0.355944 1_3:+70990240 None:intergenic
CCATAGCAATACTCATAATC+TGG 0.361158 1_3:+70990130 None:intergenic
TAAGAAGGTGCAACAAGATT+GGG 0.367714 1_3:-70987428 Msa0138210:CDS
CATTACTATATTGGTGCAAC+TGG 0.368067 1_3:-70987836 Msa0138210:CDS
TTCGTGTCACTTAGTGAAGT+TGG 0.368564 1_3:-70986061 Msa0138210:CDS
CTTCAATATCACCATTCTTA+AGG 0.371241 1_3:+70989915 None:intergenic
GGCAATACATTTCTGAGAAC+TGG 0.372193 1_3:+70988039 None:intergenic
GAAAAGCTTTGGCGCTATCT+TGG 0.373232 1_3:+70986081 None:intergenic
TTGTGAGAGCAGTTATTATA+GGG 0.373302 1_3:-70987252 Msa0138210:CDS
AGAAGATGCTGTTTCTGTTT+GGG 0.373457 1_3:+70989991 None:intergenic
AAGAACAATATTCTTGAAGA+TGG 0.376555 1_3:-70991114 Msa0138210:CDS
CCTTGATCCAGTGGGTGCTT+TGG 0.376915 1_3:-70990653 Msa0138210:CDS
CTTGTGAGAGCAGTTATTAT+AGG 0.376927 1_3:-70987253 Msa0138210:CDS
CCATTTGACTGCACGTGAAC+AGG 0.381025 1_3:+70988100 None:intergenic
CAGAAATGTATTGCCATTGA+TGG 0.382057 1_3:-70988031 Msa0138210:CDS
GCGTGGTCATTACATTCTTA+AGG 0.384676 1_3:-70986215 Msa0138210:CDS
TTGGACTCTGTTCCTCAGCT+GGG 0.384701 1_3:+70990905 None:intergenic
TCAGATTCCGATTCAGATAG+TGG 0.387150 1_3:-70991627 Msa0138210:CDS
AAGATCCATCGGATCTGCTT+TGG 0.388857 1_3:+70991149 None:intergenic
GGAGCTTGAAGGAACAGAAT+TGG 0.389667 1_3:-70985872 Msa0138210:three_prime_UTR
CCCTTATTACCCAGGGCAAC+GGG 0.391634 1_3:-70991085 Msa0138210:CDS
TCTTGGGTTGGAAATATAAC+TGG 0.393199 1_3:-70989938 Msa0138210:CDS
GGGATTGTGACAGAAGTTAA+TGG 0.394175 1_3:-70991672 Msa0138210:CDS
ATTACGTGGTGCTCGGGTCT+TGG 0.394831 1_3:-70991242 Msa0138210:CDS
CTTCAAATTGCGAGAGTGAT+TGG 0.397977 1_3:+70985984 None:intergenic
TTACATGCAGGTCGTTAATA+GGG 0.399446 1_3:-70988263 Msa0138210:intron
AAGGAGTGCAAGGGGAAAGA+AGG 0.399843 1_3:+70985588 None:intergenic
TCCCTAAATTACAAAGCAAC+AGG 0.400649 1_3:-70992667 Msa0138210:five_prime_UTR
TTTCCTCGTTGTCGAATTCT+CGG 0.402203 1_3:+70990182 None:intergenic
TTTGTTGTTGCAGCGGCGTA+GGG 0.405651 1_3:+70992629 None:intergenic
GTCTGTTTAGATGCTTCTGT+TGG 0.410108 1_3:-70990076 Msa0138210:CDS
TTCCTCGTTGTCGAATTCTC+GGG 0.414350 1_3:+70990183 None:intergenic
TACCAACCACATAGATTGCT+TGG 0.417008 1_3:+70988669 None:intergenic
GGCCTTACCGGTGGAACATC+AGG 0.417374 1_3:+70987166 None:intergenic
ATACTACAAAATAACCTTCC+TGG 0.418579 1_3:-70987403 Msa0138210:intron
ACCAACCACATAGATTGCTT+GGG 0.424681 1_3:+70988670 None:intergenic
CCCGTTGCCCTGGGTAATAA+GGG 0.427204 1_3:+70991085 None:intergenic
TCAAGCTCCTAGAAGTGAAT+TGG 0.427390 1_3:+70985886 None:intergenic
GCAGTCAGCATACTATCATT+CGG 0.427818 1_3:-70987026 Msa0138210:intron
ATTGTGAAACCAGCCGAGTT+GGG 0.428763 1_3:-70990282 Msa0138210:CDS
TGCCTGTCCATGTGTTTAGA+AGG 0.430598 1_3:+70986951 None:intergenic
AGTTAATGGTGATTCTGATT+CGG 0.434593 1_3:-70991658 Msa0138210:CDS
ATTTGTTGTTGCAGCGGCGT+AGG 0.436466 1_3:+70992628 None:intergenic
TTGATTAGAATCTAATTCAA+TGG 0.436489 1_3:+70990744 None:intergenic
TTGCGTCTGGAATATTCTCC+AGG 0.438651 1_3:-70988141 Msa0138210:CDS
CTAAGTGACACGAAAAGCTT+TGG 0.440220 1_3:+70986070 None:intergenic
TTAATTCCTATTGATACTCC+TGG 0.440446 1_3:-70990367 Msa0138210:CDS
GCCATTGATGGTGACAATTT+GGG 0.441062 1_3:-70988019 Msa0138210:CDS
TGGAAAGCAAGTAGGTTAGA+AGG 0.441375 1_3:-70991009 Msa0138210:CDS
GTGGTGCTCGGGTCTTGGTT+AGG 0.441543 1_3:-70991237 Msa0138210:CDS
TATATGAAGGGCTACTTGAT+TGG 0.442331 1_3:-70986181 Msa0138210:CDS
CAAGTTCTAGTTTCACTACA+AGG 0.442611 1_3:-70986887 Msa0138210:CDS
GGACAGAGGGTGGAAAGGGT+TGG 0.444104 1_3:-70985726 Msa0138210:three_prime_UTR
ATAAGAAGGTGCAACAAGAT+TGG 0.445159 1_3:-70987429 Msa0138210:CDS
ATTTGGACAGAGGGTGGAAA+GGG 0.447808 1_3:-70985730 Msa0138210:three_prime_UTR
GAATTAGATTCTAATCAAAC+AGG 0.448123 1_3:-70990739 Msa0138210:CDS
GAAGCTTATGAGCGTAGAAA+AGG 0.449473 1_3:+70985569 None:intergenic
ATTACCCAGGGCAACGGGTA+AGG 0.451412 1_3:-70991080 Msa0138210:CDS
CAGTCAGCATACTATCATTC+GGG 0.451617 1_3:-70987025 Msa0138210:CDS
GAAAGAGAAACAAACCTCTC+TGG 0.452552 1_3:+70988547 None:intergenic
GTGACTGTCTTATTTGATGA+TGG 0.452605 1_3:-70991189 Msa0138210:CDS
TGATCACCAGGAGTATCAAT+AGG 0.453192 1_3:+70990361 None:intergenic
ATCCAAGTTCTTCTGTCCCC+TGG 0.453803 1_3:+70988123 None:intergenic
GGAGTTCTCAGACCTCTCTT+GGG 0.453980 1_3:-70989954 Msa0138210:CDS
CAATCACTCTCGCAATTTGA+AGG 0.456752 1_3:-70985983 Msa0138210:intron
CAATCTTCAAGATGGCTAGA+TGG 0.456811 1_3:-70991044 Msa0138210:CDS
GCTGAATATCCCTTTGAGTA+TGG 0.457310 1_3:-70985817 Msa0138210:three_prime_UTR
GGTGGAACATCAGGATAATC+TGG 0.458633 1_3:+70987175 None:intergenic
GAAGGTGATGAAAGTAATAA+TGG 0.458746 1_3:-70991567 Msa0138210:CDS
GAATATTCCAGACGCAAGTC+TGG 0.458920 1_3:+70988147 None:intergenic
GGTGAAGAGGCCAAGCTTCA+CGG 0.460949 1_3:+70990545 None:intergenic
CACGGATCCAACTGTAACAT+TGG 0.461020 1_3:+70990978 None:intergenic
TATCCAGCTTCATTGAAGTA+AGG 0.461785 1_3:+70986845 None:intergenic
AAGAGTTGATGTTGCTTGGC+AGG 0.462123 1_3:-70990425 Msa0138210:CDS
GCTGGAGATTACGTGGTGCT+CGG 0.462298 1_3:-70991249 Msa0138210:CDS
CAATATATCTGTGGATTTGT+TGG 0.462801 1_3:-70991337 Msa0138210:CDS
AAGATGGCTAGATGGTTGTC+TGG 0.463989 1_3:-70991036 Msa0138210:CDS
AGCTTCATTGAAGTAAGGCT+TGG 0.464285 1_3:+70986850 None:intergenic
TTCTTACAAGAAACTCCATC+AGG 0.466623 1_3:+70991756 None:intergenic
GCTCATGCAAATTGGCAATT+GGG 0.466739 1_3:-70990856 Msa0138210:CDS
CCTGTTCACGTGCAGTCAAA+TGG 0.467128 1_3:-70988100 Msa0138210:CDS
CAAACAGAAACAGCATCTTC+TGG 0.469108 1_3:-70989989 Msa0138210:CDS
ATCATCATCAACGGTTTCCC+AGG 0.470293 1_3:+70988592 None:intergenic
CCAGATTATGAGTATTGCTA+TGG 0.470546 1_3:-70990130 Msa0138210:CDS
GCTTCTGCCTCTGACCCTAC+CGG 0.470925 1_3:-70991384 Msa0138210:CDS
CGTATCAGGGATTTCACTGC+TGG 0.471251 1_3:-70991267 Msa0138210:CDS
GATCCAGTGGGTGCTTTGGA+AGG 0.472606 1_3:-70990649 Msa0138210:CDS
ACCCAAATTGTCACCATCAA+TGG 0.474038 1_3:+70988018 None:intergenic
AAACCTCTCTGGAATCCTCT+TGG 0.475203 1_3:+70988558 None:intergenic
CGTGTGTTGCTTATGAGACT+TGG 0.476148 1_3:+70985498 None:intergenic
AAATAAGGAAAGTTGTCATC+AGG 0.476312 1_3:-70990516 Msa0138210:CDS
TTCTCAGACCTCTCTTGGGT+TGG 0.477420 1_3:-70989950 Msa0138210:CDS
GGTGCTTTGGAAGGGAATGA+TGG 0.478745 1_3:-70990640 Msa0138210:CDS
GCTACAGTTGAGGAATCAAA+TGG 0.480553 1_3:-70990694 Msa0138210:CDS
AAAGAGAGCCCGGAAGAAAG+AGG 0.481407 1_3:-70990488 Msa0138210:CDS
AATATAACTGGCCTTAAGAA+TGG 0.481691 1_3:-70989926 Msa0138210:CDS
TCTGAAGAGCAGCAGTCTTA+CGG 0.482277 1_3:+70991508 None:intergenic
TGGATAGCATCTGCAGGTCA+TGG 0.482371 1_3:-70990946 Msa0138210:CDS
AAGCCTTACTTCAATGAAGC+TGG 0.484900 1_3:-70986848 Msa0138210:CDS
TGTAAGTGTCTATGAGCTAG+AGG 0.484914 1_3:-70990158 Msa0138210:CDS
ATTCACTTCTAGGAGCTTGA+AGG 0.487000 1_3:-70985883 Msa0138210:three_prime_UTR
AACCCTAATTTGTATGAGGA+AGG 0.489086 1_3:-70986989 Msa0138210:CDS
AACCGTTGATGATGATGAAA+TGG 0.490510 1_3:-70988585 Msa0138210:CDS
CTTGAAGATTGATGAAGACT+TGG 0.490569 1_3:+70991056 None:intergenic
TCCCTTATTACCCAGGGCAA+CGG 0.491274 1_3:-70991086 Msa0138210:CDS
GGATCATCAACCTTGGCAGC+TGG 0.491551 1_3:+70990205 None:intergenic
TATTAACCCTAATTTGTATG+AGG 0.492737 1_3:-70986993 Msa0138210:CDS
CTCTGACCCTACCGGGCAAG+TGG 0.492972 1_3:-70991376 Msa0138210:CDS
TTTGTAACCAGACTTGCGTC+TGG 0.493114 1_3:-70988154 Msa0138210:CDS
GGACAAGAGTTGATGTTGCT+TGG 0.494025 1_3:-70990429 Msa0138210:CDS
AGTGACTCCACTATCTGAAT+CGG 0.498510 1_3:+70991620 None:intergenic
TTGAATATTTGGACAGAGGG+TGG 0.500463 1_3:-70985736 Msa0138210:three_prime_UTR
GGCTTGTGATGCATATATGA+AGG 0.500917 1_3:-70986194 Msa0138210:CDS
CTCCAGGGGACAGAAGAACT+TGG 0.501131 1_3:-70988125 Msa0138210:CDS
CCTCACCACCCCAACTCGGC+TGG 0.503472 1_3:+70990273 None:intergenic
CCAAAGCACCCACTGGATCA+AGG 0.504338 1_3:+70990653 None:intergenic
TTCCCTTCCAAAGCACCCAC+TGG 0.506268 1_3:+70990646 None:intergenic
AACCACAACACCCACTTGCC+CGG 0.508005 1_3:+70991365 None:intergenic
GTAGTGAAACTAGAACTTGA+AGG 0.508515 1_3:+70986891 None:intergenic
ACAAATCGAATTGCTGCAAG+TGG 0.510781 1_3:+70988172 None:intergenic
CTGGAGATTACGTGGTGCTC+GGG 0.511991 1_3:-70991248 Msa0138210:CDS
GTCTACTGAGAAATCGAAGC+AGG 0.513349 1_3:-70990050 Msa0138210:CDS
AGGATCCTGTCCGTGAAGCT+TGG 0.513455 1_3:-70990555 Msa0138210:CDS
CTGGCTTGTGGAAAGCAAGT+AGG 0.515871 1_3:-70991017 Msa0138210:CDS
CAGATTATGAGTATTGCTAT+GGG 0.516113 1_3:-70990129 Msa0138210:CDS
CTATATTGGTGCAACTGGAC+AGG 0.516223 1_3:-70987831 Msa0138210:intron
TATTTGGACAGAGGGTGGAA+AGG 0.516251 1_3:-70985731 Msa0138210:three_prime_UTR
AGAGGCCAAGCTTCACGGAC+AGG 0.516693 1_3:+70990550 None:intergenic
ACAAGAAACTCCATCAGGTT+CGG 0.516897 1_3:+70991761 None:intergenic
TTTGGGACTCCTTACCAAGA+TGG 0.518715 1_3:-70987226 Msa0138210:CDS
AATTGTGAAACCAGCCGAGT+TGG 0.520716 1_3:-70990283 Msa0138210:CDS
AGCAATGTTGCAGAAGAGAA+TGG 0.521233 1_3:-70988232 Msa0138210:CDS
TTGGGACTCCTTACCAAGAT+GGG 0.521336 1_3:-70987225 Msa0138210:CDS
AGTCCAAATTCAACCTCTGT+TGG 0.522157 1_3:-70986121 Msa0138210:CDS
TCCAGAAAGTTCAGAAAATG+TGG 0.522889 1_3:-70987963 Msa0138210:CDS
GTTTATTGGATAGCATCTGC+AGG 0.522973 1_3:-70990952 Msa0138210:CDS
GAGAATGGAGAGAAAGACTC+TGG 0.523742 1_3:-70988217 Msa0138210:CDS
GTTAATGGTCGGTCTTGCAA+TGG 0.524091 1_3:-70985677 Msa0138210:three_prime_UTR
GAAATTGGTTTAAGATCCAT+CGG 0.524914 1_3:+70991138 None:intergenic
GGCATTTCCCTTATTACCCA+GGG 0.525144 1_3:-70991092 Msa0138210:CDS
TGGCCCTTACCCGTTGCCCT+GGG 0.525541 1_3:+70991076 None:intergenic
ATCCAGTGGGTGCTTTGGAA+GGG 0.526457 1_3:-70990648 Msa0138210:CDS
TGTTGGTTTCAAGTTGATGT+TGG 0.527025 1_3:-70986104 Msa0138210:CDS
CTAACGAGCTACGTGTACTC+TGG 0.527614 1_3:-70991485 Msa0138210:CDS
GATTCTAATCAAACAGGAAG+CGG 0.527792 1_3:-70990733 Msa0138210:CDS
GTGGATTTGTTGGCCCATGA+TGG 0.530712 1_3:-70991327 Msa0138210:CDS
TCAGGAAAGAAAAGAGAGCC+CGG 0.530989 1_3:-70990498 Msa0138210:CDS
TACATGTGACCATACTCAAA+GGG 0.531281 1_3:+70985808 None:intergenic
CTCTTCAAATTGTGAACACT+AGG 0.531868 1_3:-70990450 Msa0138210:CDS
AGAAGAAGAAGAATATGCGA+AGG 0.533429 1_3:+70992595 None:intergenic
ACGAGTTTATGAAGATAGAA+TGG 0.533504 1_3:-70987278 Msa0138210:CDS
ATGGTGATATTGAAGTTACA+TGG 0.536682 1_3:-70989907 Msa0138210:CDS
CATACTATCATTCGGGTGGT+TGG 0.538585 1_3:-70987018 Msa0138210:CDS
GGGCATTTCCCTTATTACCC+AGG 0.538767 1_3:-70991093 Msa0138210:CDS
TTCCATTTCATCATCATCAA+CGG 0.539102 1_3:+70988583 None:intergenic
ATATAAGCGATGCTGCAACC+TGG 0.540349 1_3:-70988610 Msa0138210:CDS
CAAATTGGCAATTGGGTGAC+CGG 0.541623 1_3:-70990849 Msa0138210:CDS
TATAAGCGATGCTGCAACCT+GGG 0.541756 1_3:-70988609 Msa0138210:CDS
TTACCCAGGGCAACGGGTAA+GGG 0.543644 1_3:-70991079 Msa0138210:CDS
GCCTTAGCCTTCTAAACACA+TGG 0.544228 1_3:-70986958 Msa0138210:CDS
CACTTGCCCGGTAGGGTCAG+AGG 0.545870 1_3:+70991377 None:intergenic
AGCCTTCTAAACACATGGAC+AGG 0.547075 1_3:-70986953 Msa0138210:CDS
GATGCTGAATCACTTGCAGC+AGG 0.547481 1_3:-70988638 Msa0138210:CDS
CAAAAGTCGTTGTTAATGGT+CGG 0.548365 1_3:-70985688 Msa0138210:three_prime_UTR
CTTCTGCCTCTGACCCTACC+GGG 0.550262 1_3:-70991383 Msa0138210:CDS
AGCGGACAGCTTGTGTGAGG+TGG 0.551137 1_3:-70990234 Msa0138210:CDS
ATTCTAATCAAACAGGAAGC+GGG 0.553763 1_3:-70990732 Msa0138210:CDS
ATGGTTGCAGAAATTCTGAT+AGG 0.554473 1_3:-70991548 Msa0138210:CDS
GAGCGTAGAAAAGGAGTGCA+AGG 0.555597 1_3:+70985578 None:intergenic
TCTTGGTAAGGAGTCCCAAA+TGG 0.557448 1_3:+70987229 None:intergenic
AGAACAATATTCTTGAAGAT+GGG 0.558668 1_3:-70991113 Msa0138210:CDS
GTGGATAAAACCAGCTGCCA+AGG 0.559036 1_3:-70990215 Msa0138210:CDS
ACCCTAATTTGTATGAGGAA+GGG 0.560373 1_3:-70986988 Msa0138210:CDS
CCAATATAGTAATGGTCTAA+CGG 0.560418 1_3:+70987845 None:intergenic
AAGCTTACGAAGAAAGAAGA+AGG 0.560538 1_3:+70992518 None:intergenic
TTGTTGTTGCAGCGGCGTAG+GGG 0.561190 1_3:+70992630 None:intergenic
GCATCATTGTCACAACTAGC+AGG 0.561272 1_3:+70987902 None:intergenic
TTGAGTATGGTCACATGTAG+AGG 0.561925 1_3:-70985804 Msa0138210:three_prime_UTR
GTCTTCATCAATCTTCAAGA+TGG 0.563098 1_3:-70991052 Msa0138210:CDS
CAGGATGGAACGATAGGGTG+TGG 0.564158 1_3:-70990406 Msa0138210:CDS
TCACAATCACCAACCTTGGG+TGG 0.565177 1_3:+70986719 None:intergenic
GAGGAGGGTGATGTTGAGGA+AGG 0.565914 1_3:-70991585 Msa0138210:CDS
ATTGAAGTTACATGGGCTGA+TGG 0.566447 1_3:-70989899 Msa0138210:CDS
GGATAGCATCTGCAGGTCAT+GGG 0.566920 1_3:-70990945 Msa0138210:CDS
TTCTTCTGCTGCCCCAGCTG+AGG 0.566936 1_3:-70990917 Msa0138210:CDS
AGGCAGAGGCAATGAAGTAT+GGG 0.567003 1_3:-70986933 Msa0138210:CDS
CAACCGAAAATGGTATAAGA+AGG 0.567441 1_3:-70987443 Msa0138210:CDS
CGAGCTACGTGTACTCTGGA+TGG 0.569200 1_3:-70991481 Msa0138210:CDS
GAAGCAAACACTAACAGAGC+AGG 0.569782 1_3:-70985839 Msa0138210:three_prime_UTR
CATGAACTAGATTCACATGA+AGG 0.572645 1_3:+70990601 None:intergenic
CCCCAAGCAATCTATGTGGT+TGG 0.573456 1_3:-70988671 Msa0138210:CDS
TTCTCGGGGATCATCAACCT+TGG 0.575365 1_3:+70990198 None:intergenic
TAATTTGTATGAGGAAGGGA+AGG 0.575736 1_3:-70986984 Msa0138210:CDS
GCTTGTGATGCATATATGAA+GGG 0.576279 1_3:-70986193 Msa0138210:CDS
CACTGATGATGAGGTTGAGG+AGG 0.577657 1_3:-70991601 Msa0138210:CDS
TACTATGGACCTTGATCCAG+TGG 0.578394 1_3:-70990662 Msa0138210:CDS
ACATTCTGAAAACAAAGAGC+CGG 0.579539 1_3:-70991799 Msa0138210:CDS
CTTCCGCATAAGATACATCA+TGG 0.580666 1_3:+70986742 None:intergenic
ACAACACCCACTTGCCCGGT+AGG 0.581062 1_3:+70991369 None:intergenic
CGTGTCACTTAGTGAAGTTG+GGG 0.581430 1_3:-70986059 Msa0138210:CDS
CTAGATGGTTGTCTGGCTTG+TGG 0.582436 1_3:-70991029 Msa0138210:CDS
GGCTGATGGGATGGTATCAA+CGG 0.583229 1_3:-70989885 Msa0138210:intron
TAGTTCTATATCAGTATCAA+AGG 0.584362 1_3:-70990575 Msa0138210:CDS
TTGTGAAACCAGCCGAGTTG+GGG 0.585286 1_3:-70990281 Msa0138210:CDS
AAGTTCTAGTTTCACTACAA+GGG 0.585505 1_3:-70986886 Msa0138210:CDS
GCTGGATATGATAAGCAGAC+TGG 0.585847 1_3:-70986830 Msa0138210:CDS
AATGCTAATGCCGAACCTGA+TGG 0.586783 1_3:-70991771 Msa0138210:CDS
CAGTTGCACCAATATAGTAA+TGG 0.587161 1_3:+70987837 None:intergenic
GTTGATGTTGCTTGGCAGGA+TGG 0.587382 1_3:-70990421 Msa0138210:CDS
AAGCAGACTGGAACAGCTGA+AGG 0.588715 1_3:-70986818 Msa0138210:CDS
AGTCACTGATGATGAGGTTG+AGG 0.589409 1_3:-70991604 Msa0138210:CDS
GCTTGGCAGGATGGAACGAT+AGG 0.589433 1_3:-70990412 Msa0138210:CDS
CTACATGTGACCATACTCAA+AGG 0.589679 1_3:+70985807 None:intergenic
CAACACCCACTTGCCCGGTA+GGG 0.590045 1_3:+70991370 None:intergenic
GGTTGAGGAGGGTGATGTTG+AGG 0.590143 1_3:-70991589 Msa0138210:CDS
TGGACTCTGTTCCTCAGCTG+GGG 0.591135 1_3:+70990906 None:intergenic
ACTGTCACCAATGTTACAGT+TGG 0.591231 1_3:-70990985 Msa0138210:CDS
ATGGAGAGAAAGACTCTGGT+AGG 0.593579 1_3:-70988213 Msa0138210:CDS
AGCGTAGAAAAGGAGTGCAA+GGG 0.593717 1_3:+70985579 None:intergenic
TCCTCGTTGTCGAATTCTCG+GGG 0.594726 1_3:+70990184 None:intergenic
AGATTATCCTGATGTTCCAC+CGG 0.594761 1_3:-70987173 Msa0138210:intron
TTCAGAAGACGCTACAGTTG+AGG 0.595072 1_3:-70990704 Msa0138210:CDS
GTGTTGCTTATGAGACTTGG+AGG 0.596794 1_3:+70985501 None:intergenic
TAGTGTATTTGTTGTTGCAG+CGG 0.598020 1_3:+70992622 None:intergenic
ATCTTCTGGCGAAACTGATG+TGG 0.598531 1_3:-70989975 Msa0138210:CDS
CCAGCCGAGTTGGGGTGGTG+AGG 0.599445 1_3:-70990273 Msa0138210:CDS
TTGAAGTTACATGGGCTGAT+GGG 0.600035 1_3:-70989898 Msa0138210:CDS
CTAAACACATGGACAGGCAG+AGG 0.600258 1_3:-70986947 Msa0138210:CDS
TAAAGACTTGAAGCGTATCA+GGG 0.601171 1_3:-70991280 Msa0138210:CDS
AGCAATACTCATAATCTGGA+TGG 0.604621 1_3:+70990134 None:intergenic
TGCGTCTGGAATATTCTCCA+GGG 0.605811 1_3:-70988140 Msa0138210:CDS
TGAGTATGGTCACATGTAGA+GGG 0.607439 1_3:-70985803 Msa0138210:three_prime_UTR
CGAAGAAAGAAGAAGGAGCT+CGG 0.607980 1_3:+70992525 None:intergenic
CTTGGCAGGATGGAACGATA+GGG 0.610537 1_3:-70990411 Msa0138210:CDS
TCATGTGAATCTAGTTCATG+TGG 0.611701 1_3:-70990598 Msa0138210:CDS
CTACAGTTGAGGAATCAAAT+GGG 0.612923 1_3:-70990693 Msa0138210:CDS
TGAGTATTGCTATGGGGACG+TGG 0.613021 1_3:-70990122 Msa0138210:CDS
GAAACAAATTCATGATCACC+AGG 0.614441 1_3:+70990349 None:intergenic
GCATCTAAACAGACAGACAC+GGG 0.615674 1_3:+70990085 None:intergenic
GAAGACCTCTGATGATGGTG+AGG 0.615734 1_3:-70990308 Msa0138210:CDS
CACTCCTCACCACCCCAACT+CGG 0.617843 1_3:+70990269 None:intergenic
AGTCTCCAAAGCAGATCCGA+TGG 0.618382 1_3:-70991154 Msa0138210:CDS
GTAGAGAAGACCTCTGATGA+TGG 0.621975 1_3:-70990313 Msa0138210:CDS
AAGAAGGTGCAACAAGATTG+GGG 0.624619 1_3:-70987427 Msa0138210:CDS
CATCAGGATAATCTGGCGGA+AGG 0.631572 1_3:+70987182 None:intergenic
TTATATTTCCAACCCAAGAG+AGG 0.633520 1_3:+70989942 None:intergenic
ATTATCCTCACCATCATCAG+AGG 0.638378 1_3:+70990303 None:intergenic
AGTTACATGGGCTGATGGGA+TGG 0.639750 1_3:-70989894 Msa0138210:CDS
TGATGAAATGGAAGTCCAAG+AGG 0.640484 1_3:-70988573 Msa0138210:CDS
TACATCACTGAAATTCTGTG+TGG 0.640752 1_3:+70991446 None:intergenic
GGTTGATGTCAATATATCTG+TGG 0.644099 1_3:-70991346 Msa0138210:CDS
TACCGGGCAAGTGGGTGTTG+TGG 0.646507 1_3:-70991367 Msa0138210:CDS
ATGCTGAATCACTTGCAGCA+GGG 0.647161 1_3:-70988637 Msa0138210:CDS
GTAAGTGTCTATGAGCTAGA+GGG 0.648581 1_3:-70990157 Msa0138210:CDS
TCCATGTGTTTAGAAGGCTA+AGG 0.648648 1_3:+70986957 None:intergenic
TCTTATGCGGAAGCCACCCA+AGG 0.649569 1_3:-70986732 Msa0138210:intron
GATGTAGAAGTTGTTGATCG+TGG 0.653076 1_3:-70991429 Msa0138210:CDS
TGAAACCAGCCGAGTTGGGG+TGG 0.654106 1_3:-70990278 Msa0138210:CDS
TGCTATCCAATAAACAAACA+CGG 0.654292 1_3:+70990960 None:intergenic
TTTCACTGCTGGAGATTACG+TGG 0.654378 1_3:-70991256 Msa0138210:CDS
TCTGACCCTACCGGGCAAGT+GGG 0.654748 1_3:-70991375 Msa0138210:CDS
AGCATCTAAACAGACAGACA+CGG 0.655938 1_3:+70990084 None:intergenic
AGACCATGATGTATCTTATG+CGG 0.659124 1_3:-70986745 Msa0138210:CDS
CAAATCGAATTGCTGCAAGT+GGG 0.661530 1_3:+70988173 None:intergenic
AAGAGCGGACAGCTTGTGTG+AGG 0.667087 1_3:-70990237 Msa0138210:CDS
GGTTTGTTAACTCGTGTGTG+AGG 0.668637 1_3:-70985656 Msa0138210:three_prime_UTR
TAGTGGAGTCACTGATGATG+AGG 0.669267 1_3:-70991610 Msa0138210:CDS
CCAACCACATAGATTGCTTG+GGG 0.674017 1_3:+70988671 None:intergenic
GCGTAGAAAAGGAGTGCAAG+GGG 0.679096 1_3:+70985580 None:intergenic
GCGTCTGGAATATTCTCCAG+GGG 0.679281 1_3:-70988139 Msa0138210:CDS
TCAGCATACTATCATTCGGG+TGG 0.679522 1_3:-70987022 Msa0138210:CDS
CAGATGAGTGCAAAAGACAC+CGG 0.683231 1_3:+70990830 None:intergenic
TGGTGATATTGAAGTTACAT+GGG 0.687312 1_3:-70989906 Msa0138210:CDS
ACTGATGATGAGGTTGAGGA+GGG 0.690022 1_3:-70991600 Msa0138210:CDS
ACTATGGACCTTGATCCAGT+GGG 0.693134 1_3:-70990661 Msa0138210:CDS
AGTCCAAGAGGATTCCAGAG+AGG 0.694976 1_3:-70988561 Msa0138210:intron
GTATGGTCACATGTAGAGGG+AGG 0.697805 1_3:-70985800 Msa0138210:three_prime_UTR
TGGACCCCAAGCAATCTATG+TGG 0.699060 1_3:-70988675 Msa0138210:CDS
GGAGTGTTGATGCCAAAGAG+CGG 0.700011 1_3:-70990252 Msa0138210:CDS
GGAACATCAGGATAATCTGG+CGG 0.701804 1_3:+70987178 None:intergenic
GAAAGACTCTGGTAGGACCG+CGG 0.708466 1_3:-70988206 Msa0138210:CDS
AAAATGTGGAAGCATCTGAG+AGG 0.709572 1_3:-70987949 Msa0138210:CDS
TCACTGTTCACTGACCAGGA+AGG 0.713454 1_3:+70987389 None:intergenic
AAGTGGGACAGAAAGTGCCG+CGG 0.714231 1_3:+70988189 None:intergenic
AGATTATGAGTATTGCTATG+GGG 0.717944 1_3:-70990128 Msa0138210:CDS
TCCCCGAGAATTCGACAACG+AGG 0.725016 1_3:-70990185 Msa0138210:CDS
ACTGCTATTGTCACTCACAG+AGG 0.736196 1_3:+70986141 None:intergenic
CATCAACTTGAAACCAACAG+AGG 0.738886 1_3:+70986108 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGAAAAAATGAATATT+AGG + chr1_3:70985718-70985737 None:intergenic 10.0%
!! AAAAAAAAATCAATAAATTG+GGG + chr1_3:70986108-70986127 None:intergenic 10.0%
!!! TTATTATTGTTATTTAGTTA+AGG - chr1_3:70986146-70986165 Msa0138210:CDS 10.0%
!!! ACTTTTATTTTTTGAATATT+TGG - chr1_3:70992389-70992408 Msa0138210:intron 10.0%
!! ATATTAGGAATTAATTGAAA+AGG + chr1_3:70985703-70985722 None:intergenic 15.0%
!! AGCTAAAAAAAAATTAATTG+TGG + chr1_3:70986041-70986060 None:intergenic 15.0%
!!! CTAAGTAAATTTTAAAACTA+TGG - chr1_3:70986189-70986208 Msa0138210:CDS 15.0%
!!! TGATATTTTATGATTTTAGA+TGG - chr1_3:70986295-70986314 Msa0138210:intron 15.0%
!!! TATTTTTATTTTCTTTTGAG+TGG - chr1_3:70989013-70989032 Msa0138210:intron 15.0%
!!! ATTTTTATTTTCTTTTGAGT+GGG - chr1_3:70989014-70989033 Msa0138210:intron 15.0%
!!! GTATTCATTTTAATATCTAT+AGG - chr1_3:70989097-70989116 Msa0138210:intron 15.0%
!! TTTCAAATGAAGAAAAATAA+AGG + chr1_3:70989733-70989752 None:intergenic 15.0%
!!! TTATTTTTCTTCATTTGAAA+AGG - chr1_3:70989733-70989752 Msa0138210:intron 15.0%
!! AACTAATCAAAGATAAAATA+GGG + chr1_3:70991467-70991486 None:intergenic 15.0%
!! TAACTAATCAAAGATAAAAT+AGG + chr1_3:70991468-70991487 None:intergenic 15.0%
!! AAAATTTACACCATTAAAAA+AGG - chr1_3:70991555-70991574 Msa0138210:CDS 15.0%
!! AAATTTACACCATTAAAAAA+GGG - chr1_3:70991556-70991575 Msa0138210:CDS 15.0%
!!! AAATTTTAAAACTATGGAAG+AGG - chr1_3:70986195-70986214 Msa0138210:CDS 20.0%
!!! TTTTGATTTGTTTTTGTTGA+TGG + chr1_3:70987350-70987369 None:intergenic 20.0%
!! CAACAAAAACAAATCAAAAT+TGG - chr1_3:70987351-70987370 Msa0138210:intron 20.0%
!! TTGATTAGAATCTAATTCAA+TGG + chr1_3:70987395-70987414 None:intergenic 20.0%
!!! TTAACTTTTATCAACAGAAT+GGG + chr1_3:70988321-70988340 None:intergenic 20.0%
!!! TTTAACTTTTATCAACAGAA+TGG + chr1_3:70988322-70988341 None:intergenic 20.0%
!!! TCATACAAATTTTAAAACCT+TGG + chr1_3:70988434-70988453 None:intergenic 20.0%
!! GAGTTATAGAATACAAAATA+AGG - chr1_3:70988887-70988906 Msa0138210:intron 20.0%
!! TTATAGAATACAAAATAAGG+TGG - chr1_3:70988890-70988909 Msa0138210:intron 20.0%
!!! TCCACTATGATTTTATATTA+TGG + chr1_3:70988956-70988975 None:intergenic 20.0%
!! AAAATATGACTATCAAACAA+TGG + chr1_3:70988999-70989018 None:intergenic 20.0%
!! ACAAATAACAATTACAATGT+AGG + chr1_3:70989079-70989098 None:intergenic 20.0%
!! ATCTATAAACCAAAATTCAT+GGG + chr1_3:70989244-70989263 None:intergenic 20.0%
!!! GAAAAATAAAGGATTTTGAT+AGG + chr1_3:70989722-70989741 None:intergenic 20.0%
!! AATTATGTAAAATTACATGC+AGG - chr1_3:70989861-70989880 Msa0138210:intron 20.0%
!! TTACAGATTAGTATTATTGT+AGG - chr1_3:70990481-70990500 Msa0138210:CDS 20.0%
!!! AATTCTTTTGTTATATCACA+TGG - chr1_3:70990627-70990646 Msa0138210:CDS 20.0%
!!! ATTCTTTTGTTATATCACAT+GGG - chr1_3:70990628-70990647 Msa0138210:CDS 20.0%
!! TTGTTCACATTTATTGAAAT+GGG + chr1_3:70990808-70990827 None:intergenic 20.0%
!! ATTGTTCACATTTATTGAAA+TGG + chr1_3:70990809-70990828 None:intergenic 20.0%
!!! TGTGGACTAAATTTATATAA+TGG + chr1_3:70991041-70991060 None:intergenic 20.0%
!! ACTAATCAAAGATAAAATAG+GGG + chr1_3:70991466-70991485 None:intergenic 20.0%
!!! TTTTATCTTTGATTAGTTAC+AGG - chr1_3:70991469-70991488 Msa0138210:CDS 20.0%
!! TGATAGATTAACTATACATA+CGG + chr1_3:70991529-70991548 None:intergenic 20.0%
!! AAACAACATTTAAATCTTGA+AGG - chr1_3:70991649-70991668 Msa0138210:CDS 20.0%
! TAAAAAAAACTATAGCTGCA+GGG + chr1_3:70985676-70985695 None:intergenic 25.0%
! ATAAAAAAAACTATAGCTGC+AGG + chr1_3:70985677-70985696 None:intergenic 25.0%
! TCGGAAAATAAAAATGAAGA+TGG + chr1_3:70985741-70985760 None:intergenic 25.0%
! AAAAGACGAATGAATAATAG+AGG + chr1_3:70985796-70985815 None:intergenic 25.0%
! AAAAATCTGCAGAAAAAACA+CGG + chr1_3:70985855-70985874 None:intergenic 25.0%
! TTCACAAACTAGATTGTAAT+TGG - chr1_3:70985970-70985989 Msa0138210:intron 25.0%
! AAATTGGGGAAAAAAAACAA+AGG + chr1_3:70986094-70986113 None:intergenic 25.0%
! TTGTCAAGAATAAAAACACT+GGG - chr1_3:70986435-70986454 Msa0138210:intron 25.0%
!! TTTTATGATAGATCCATCAT+GGG + chr1_3:70986825-70986844 None:intergenic 25.0%
! AGAATATTGTTCTTCGAAAT+TGG + chr1_3:70987016-70987035 None:intergenic 25.0%
! AAGAACAATATTCTTGAAGA+TGG - chr1_3:70987022-70987041 Msa0138210:CDS 25.0%
! AGAACAATATTCTTGAAGAT+GGG - chr1_3:70987023-70987042 Msa0138210:CDS 25.0%
!!! GACAGCAATTTTAAGTTTTT+TGG + chr1_3:70987253-70987272 None:intergenic 25.0%
! GAATTAGATTCTAATCAAAC+AGG - chr1_3:70987397-70987416 Msa0138210:intron 25.0%
! AAATGGGAATAAAGATACTA+TGG - chr1_3:70987459-70987478 Msa0138210:intron 25.0%
!! TAGTTCTATATCAGTATCAA+AGG - chr1_3:70987561-70987580 Msa0138210:intron 25.0%
!!! CAACTTTCCTTATTTTTTTG+CGG + chr1_3:70987615-70987634 None:intergenic 25.0%
! TTAGTAGAATATCTAATCAC+CGG + chr1_3:70988491-70988510 None:intergenic 25.0%
!! ATAAAGTACTATTAACACTG+AGG + chr1_3:70988517-70988536 None:intergenic 25.0%
! AACTAGTATTACTAAGGAAA+AGG - chr1_3:70988739-70988758 Msa0138210:intron 25.0%
! ATATATTCACTCAGAAATTG+GGG + chr1_3:70988854-70988873 None:intergenic 25.0%
! CATATATTCACTCAGAAATT+GGG + chr1_3:70988855-70988874 None:intergenic 25.0%
! TCATATATTCACTCAGAAAT+TGG + chr1_3:70988856-70988875 None:intergenic 25.0%
! AGTATGAAAATATCTAGTCA+AGG - chr1_3:70988913-70988932 Msa0138210:intron 25.0%
!! ATGATTTTATATTATGGCAC+AGG + chr1_3:70988950-70988969 None:intergenic 25.0%
! GCCATAATATAAAATCATAG+TGG - chr1_3:70988952-70988971 Msa0138210:intron 25.0%
! ATAGAAAAGCAGTGAATATT+AGG - chr1_3:70989133-70989152 Msa0138210:intron 25.0%
! GATCTATAAACCAAAATTCA+TGG + chr1_3:70989245-70989264 None:intergenic 25.0%
! AAGCAGCAAAATAATAGATT+GGG - chr1_3:70989334-70989353 Msa0138210:intron 25.0%
! CTATAATTTACTTTACTTCC+AGG - chr1_3:70989437-70989456 Msa0138210:intron 25.0%
! ACTTACTAATGCATTATAGT+TGG + chr1_3:70989614-70989633 None:intergenic 25.0%
! AAACAAATCCATTTATCGAA+GGG + chr1_3:70989777-70989796 None:intergenic 25.0%
! AAAACAAATCCATTTATCGA+AGG + chr1_3:70989778-70989797 None:intergenic 25.0%
!!! TCGATAAATGGATTTGTTTT+AGG - chr1_3:70989778-70989797 Msa0138210:intron 25.0%
!!! CGATAAATGGATTTGTTTTA+GGG - chr1_3:70989779-70989798 Msa0138210:intron 25.0%
!!! TAGTTTGAAACATTTTGACA+TGG - chr1_3:70990260-70990279 Msa0138210:CDS 25.0%
!! TTTTCTCGAGATTAGAATTA+AGG + chr1_3:70990342-70990361 None:intergenic 25.0%
! GGGAAATGAAAAAAATGAAT+AGG - chr1_3:70990365-70990384 Msa0138210:CDS 25.0%
! GATTAGTATTATTGTAGGTT+AGG - chr1_3:70990486-70990505 Msa0138210:CDS 25.0%
!!! CAGTATTGAGTTTTTATCAT+TGG - chr1_3:70990544-70990563 Msa0138210:CDS 25.0%
!!! TTCTTTTGTTATATCACATG+GGG - chr1_3:70990629-70990648 Msa0138210:CDS 25.0%
!! TATTAACCCTAATTTGTATG+AGG - chr1_3:70991143-70991162 Msa0138210:CDS 25.0%
! ATAAGCAAAACACTTTCTTT+AGG - chr1_3:70991600-70991619 Msa0138210:CDS 25.0%
! AGACATTAGAATGCAAATAT+GGG + chr1_3:70991762-70991781 None:intergenic 25.0%
! AAGACATTAGAATGCAAATA+TGG + chr1_3:70991763-70991782 None:intergenic 25.0%
!!! TTTTTTGAATATTTGGACAG+AGG - chr1_3:70992396-70992415 Msa0138210:intron 25.0%
!! TTTTTGAATATTTGGACAGA+GGG - chr1_3:70992397-70992416 Msa0138210:intron 25.0%
! TATTCAAAAGTCGTTGTTAA+TGG - chr1_3:70992444-70992463 Msa0138210:intron 25.0%
!! TCCTGTTGCTTTGTAATTTA+GGG + chr1_3:70985473-70985492 None:intergenic 30.0%
!! ATCCTGTTGCTTTGTAATTT+AGG + chr1_3:70985474-70985493 None:intergenic 30.0%
! ACACGGATTAAGATAACTTA+AGG + chr1_3:70985838-70985857 None:intergenic 30.0%
CACAGAATCAAACAAAAACA+TGG + chr1_3:70986004-70986023 None:intergenic 30.0%
!!! TTTTAAAACTATGGAAGAGG+TGG - chr1_3:70986198-70986217 Msa0138210:CDS 30.0%
GTTGTCAAGAATAAAAACAC+TGG - chr1_3:70986434-70986453 Msa0138210:intron 30.0%
AGTTAATGGTGATTCTGATT+CGG - chr1_3:70986478-70986497 Msa0138210:intron 30.0%
GAAGGTGATGAAAGTAATAA+TGG - chr1_3:70986569-70986588 Msa0138210:intron 30.0%
CAATATATCTGTGGATTTGT+TGG - chr1_3:70986799-70986818 Msa0138210:CDS 30.0%
! CTTTTATGATAGATCCATCA+TGG + chr1_3:70986826-70986845 None:intergenic 30.0%
!!! AGGAAAAGTTGATGATGTTT+TGG - chr1_3:70986919-70986938 Msa0138210:CDS 30.0%
! GAAATTGGTTTAAGATCCAT+CGG + chr1_3:70987001-70987020 None:intergenic 30.0%
TGCTATCCAATAAACAAACA+CGG + chr1_3:70987179-70987198 None:intergenic 30.0%
AAATAAGGAAAGTTGTCATC+AGG - chr1_3:70987620-70987639 Msa0138210:intron 30.0%
TTAATTCCTATTGATACTCC+TGG - chr1_3:70987769-70987788 Msa0138210:intron 30.0%
! CAGATTATGAGTATTGCTAT+GGG - chr1_3:70988007-70988026 Msa0138210:CDS 30.0%
! AGATTATGAGTATTGCTATG+GGG - chr1_3:70988008-70988027 Msa0138210:CDS 30.0%
!! AATATAACTGGCCTTAAGAA+TGG - chr1_3:70988210-70988229 Msa0138210:CDS 30.0%
CTTCAATATCACCATTCTTA+AGG + chr1_3:70988224-70988243 None:intergenic 30.0%
ATGGTGATATTGAAGTTACA+TGG - chr1_3:70988229-70988248 Msa0138210:CDS 30.0%
TGGTGATATTGAAGTTACAT+GGG - chr1_3:70988230-70988249 Msa0138210:CDS 30.0%
TTAATACAACACTTGCAATC+TGG - chr1_3:70988382-70988401 Msa0138210:intron 30.0%
AGTATGACTTCAACATAATC+AGG - chr1_3:70988453-70988472 Msa0138210:intron 30.0%
! AATCAGGATTTTCAATTTCC+CGG - chr1_3:70988469-70988488 Msa0138210:intron 30.0%
TAGTAGAATATCTAATCACC+GGG + chr1_3:70988490-70988509 None:intergenic 30.0%
ATAATACTTACAATCAGCGA+AGG - chr1_3:70988539-70988558 Msa0138210:intron 30.0%
CAATTTCCACCATTTCAAAA+AGG + chr1_3:70988601-70988620 None:intergenic 30.0%
!!! CTTTTTGAAATGGTGGAAAT+TGG - chr1_3:70988599-70988618 Msa0138210:CDS 30.0%
! TTGGTATAGGATTTTGCTTT+AGG - chr1_3:70988618-70988637 Msa0138210:CDS 30.0%
! AGATCTAATCCTTACTGATT+GGG + chr1_3:70988688-70988707 None:intergenic 30.0%
AGTGTGAACTAGTATTACTA+AGG - chr1_3:70988733-70988752 Msa0138210:intron 30.0%
TAGTATTACTAAGGAAAAGG+AGG - chr1_3:70988742-70988761 Msa0138210:intron 30.0%
AGTATTACTAAGGAAAAGGA+GGG - chr1_3:70988743-70988762 Msa0138210:intron 30.0%
GAGTGAATATATGATCCTTA+AGG - chr1_3:70988862-70988881 Msa0138210:intron 30.0%
TGAATATATGATCCTTAAGG+TGG - chr1_3:70988865-70988884 Msa0138210:intron 30.0%
TATTCTATAACTCCACCTTA+AGG + chr1_3:70988880-70988899 None:intergenic 30.0%
!! TTTATTTTCTTTTGAGTGGG+TGG - chr1_3:70989017-70989036 Msa0138210:intron 30.0%
! TTTTCTAAATGTCTGCTGAA+AGG - chr1_3:70989043-70989062 Msa0138210:intron 30.0%
! CTAAAATAGCCCATGAATTT+TGG - chr1_3:70989232-70989251 Msa0138210:intron 30.0%
!! CAATCTATTATTTTGCTGCT+TGG + chr1_3:70989335-70989354 None:intergenic 30.0%
CAAGCAGCAAAATAATAGAT+TGG - chr1_3:70989333-70989352 Msa0138210:intron 30.0%
AGCAGCAAAATAATAGATTG+GGG - chr1_3:70989335-70989354 Msa0138210:intron 30.0%
! GGGGTTAGTATAAACATATA+TGG - chr1_3:70989354-70989373 Msa0138210:intron 30.0%
AATTTACTTTACTTCCAGGT+TGG - chr1_3:70989441-70989460 Msa0138210:intron 30.0%
TTCCATTTCATCATCATCAA+CGG + chr1_3:70989556-70989575 None:intergenic 30.0%
!!! AGCATAAAGTTACTTTTAGC+AGG - chr1_3:70989693-70989712 Msa0138210:intron 30.0%
!!! TTTTAGGGTAGTCATATCAT+GGG - chr1_3:70989794-70989813 Msa0138210:intron 30.0%
CCAATATAGTAATGGTCTAA+CGG + chr1_3:70990294-70990313 None:intergenic 30.0%
ATTCTAATCTCGAGAAAAGT+AGG - chr1_3:70990344-70990363 Msa0138210:CDS 30.0%
TTCTAATCTCGAGAAAAGTA+GGG - chr1_3:70990345-70990364 Msa0138210:CDS 30.0%
TCTTGGTTAATATGCATCAA+AGG + chr1_3:70990421-70990440 None:intergenic 30.0%
ATACTACAAAATAACCTTCC+TGG - chr1_3:70990733-70990752 Msa0138210:CDS 30.0%
!! CAATGTTAACATTTTGACAG+AGG - chr1_3:70990825-70990844 Msa0138210:CDS 30.0%
ACGAGTTTATGAAGATAGAA+TGG - chr1_3:70990858-70990877 Msa0138210:CDS 30.0%
TTGTGAGAGCAGTTATTATA+GGG - chr1_3:70990884-70990903 Msa0138210:CDS 30.0%
GTTGATGTAGCTTCAAAATA+AGG + chr1_3:70990994-70991013 None:intergenic 30.0%
!! AAGTTCTAGTTTCACTACAA+GGG - chr1_3:70991250-70991269 Msa0138210:CDS 30.0%
TTACACCATTAAAAAAGGGT+TGG - chr1_3:70991560-70991579 Msa0138210:CDS 30.0%
ATTAGAATGCAAATATGGGA+TGG + chr1_3:70991758-70991777 None:intergenic 30.0%
AAAATCCTAGAGAATACATC+AGG + chr1_3:70991872-70991891 None:intergenic 30.0%
! TGCTCATCAAAGAACATTTT+AGG - chr1_3:70991896-70991915 Msa0138210:intron 30.0%
! TCATCAAAGAACATTTTAGG+AGG - chr1_3:70991899-70991918 Msa0138210:intron 30.0%
AAAAAGACCAATTCACTTCT+AGG - chr1_3:70992243-70992262 Msa0138210:intron 30.0%
GGAAAGAAGGAAAACAAAAT+TGG + chr1_3:70992538-70992557 None:intergenic 30.0%
!! TAGTGTATTTGTTGTTGCAG+CGG + chr1_3:70985517-70985536 None:intergenic 35.0%
AGAAGAAGAAGAATATGCGA+AGG + chr1_3:70985544-70985563 None:intergenic 35.0%
AAGCTTACGAAGAAAGAAGA+AGG + chr1_3:70985621-70985640 None:intergenic 35.0%
!!! GCTAGTTTTTGAGGTTGAAT+CGG + chr1_3:70985768-70985787 None:intergenic 35.0%
AAGCGTTATAGTTCAATGAG+AGG + chr1_3:70985914-70985933 None:intergenic 35.0%
! ACATTCTGAAAACAAAGAGC+CGG - chr1_3:70986337-70986356 Msa0138210:intron 35.0%
TTCTTACAAGAAACTCCATC+AGG + chr1_3:70986383-70986402 None:intergenic 35.0%
CAAGAATAAAAACACTGGGA+TGG - chr1_3:70986439-70986458 Msa0138210:intron 35.0%
AATAAAAACACTGGGATGGT+TGG - chr1_3:70986443-70986462 Msa0138210:intron 35.0%
ATAAAAACACTGGGATGGTT+GGG - chr1_3:70986444-70986463 Msa0138210:intron 35.0%
ATGGTTGCAGAAATTCTGAT+AGG - chr1_3:70986588-70986607 Msa0138210:intron 35.0%
TACATCACTGAAATTCTGTG+TGG + chr1_3:70986693-70986712 None:intergenic 35.0%
! GGTTGATGTCAATATATCTG+TGG - chr1_3:70986790-70986809 Msa0138210:CDS 35.0%
TAAAGACTTGAAGCGTATCA+GGG - chr1_3:70986856-70986875 Msa0138210:CDS 35.0%
!! GTGACTGTCTTATTTGATGA+TGG - chr1_3:70986947-70986966 Msa0138210:CDS 35.0%
CTTGAAGATTGATGAAGACT+TGG + chr1_3:70987083-70987102 None:intergenic 35.0%
GTCTTCATCAATCTTCAAGA+TGG - chr1_3:70987084-70987103 Msa0138210:intron 35.0%
TTGGATCCGTGTTTGTTTAT+TGG - chr1_3:70987170-70987189 Msa0138210:intron 35.0%
!!! CTTGTTTTGCTCATGCAAAT+TGG - chr1_3:70987272-70987291 Msa0138210:CDS 35.0%
GATTCTAATCAAACAGGAAG+CGG - chr1_3:70987403-70987422 Msa0138210:intron 35.0%
ATTCTAATCAAACAGGAAGC+GGG - chr1_3:70987404-70987423 Msa0138210:CDS 35.0%
CTACAGTTGAGGAATCAAAT+GGG - chr1_3:70987443-70987462 Msa0138210:CDS 35.0%
CATGAACTAGATTCACATGA+AGG + chr1_3:70987538-70987557 None:intergenic 35.0%
! TCATGTGAATCTAGTTCATG+TGG - chr1_3:70987538-70987557 Msa0138210:intron 35.0%
!!! CTTATTTTTTTGCGGTGAAG+AGG + chr1_3:70987607-70987626 None:intergenic 35.0%
CTCTTCACCGCAAAAAAATA+AGG - chr1_3:70987605-70987624 Msa0138210:intron 35.0%
CTCTTCAAATTGTGAACACT+AGG - chr1_3:70987686-70987705 Msa0138210:intron 35.0%
GAAACAAATTCATGATCACC+AGG + chr1_3:70987790-70987809 None:intergenic 35.0%
AGCAATACTCATAATCTGGA+TGG + chr1_3:70988005-70988024 None:intergenic 35.0%
CCATAGCAATACTCATAATC+TGG + chr1_3:70988009-70988028 None:intergenic 35.0%
! CCAGATTATGAGTATTGCTA+TGG - chr1_3:70988006-70988025 Msa0138210:CDS 35.0%
AAGCAGGAAAACGAAGAAAA+TGG - chr1_3:70988102-70988121 Msa0138210:CDS 35.0%
!! AGAAGATGCTGTTTCTGTTT+GGG + chr1_3:70988148-70988167 None:intergenic 35.0%
TTATATTTCCAACCCAAGAG+AGG + chr1_3:70988197-70988216 None:intergenic 35.0%
!! TCTTGGGTTGGAAATATAAC+TGG - chr1_3:70988198-70988217 Msa0138210:CDS 35.0%
!! TCAGGAAGACCTTTTTGAAA+TGG - chr1_3:70988589-70988608 Msa0138210:CDS 35.0%
! GAAATGGTGGAAATTGGTAT+AGG - chr1_3:70988605-70988624 Msa0138210:CDS 35.0%
!!! TTTTGCTTTAGGATGCTTGT+TGG - chr1_3:70988629-70988648 Msa0138210:CDS 35.0%
!! TTTGCTTTAGGATGCTTGTT+GGG - chr1_3:70988630-70988649 Msa0138210:CDS 35.0%
CAGATCTAATCCTTACTGAT+TGG + chr1_3:70988689-70988708 None:intergenic 35.0%
!! ATCTGCGTACATTAGTTTGT+AGG - chr1_3:70988774-70988793 Msa0138210:intron 35.0%
TTAGTAACCTCAGTAGCAAA+AGG + chr1_3:70989176-70989195 None:intergenic 35.0%
! TAGCATGTTGAACAGTCTTT+TGG - chr1_3:70989207-70989226 Msa0138210:intron 35.0%
!! AACCGTTGATGATGATGAAA+TGG - chr1_3:70989551-70989570 Msa0138210:intron 35.0%
!! AACTTTATGCTGAAAGTACC+AGG + chr1_3:70989684-70989703 None:intergenic 35.0%
!!! GTTTTAGGGTAGTCATATCA+TGG - chr1_3:70989793-70989812 Msa0138210:intron 35.0%
CTATAACCAACATCTCTAGT+TGG + chr1_3:70989820-70989839 None:intergenic 35.0%
ATTACATGCAGGTCGTTAAT+AGG - chr1_3:70989872-70989891 Msa0138210:intron 35.0%
TTACATGCAGGTCGTTAATA+GGG - chr1_3:70989873-70989892 Msa0138210:intron 35.0%
CAGAAATGTATTGCCATTGA+TGG - chr1_3:70990105-70990124 Msa0138210:CDS 35.0%
TAGCCAGAGTTGTAAAAATG+AGG - chr1_3:70990140-70990159 Msa0138210:CDS 35.0%
!! ACTCCTCATTTTTACAACTC+TGG + chr1_3:70990146-70990165 None:intergenic 35.0%
TCCAGAAAGTTCAGAAAATG+TGG - chr1_3:70990173-70990192 Msa0138210:CDS 35.0%
! TCCACATTTTCTGAACTTTC+TGG + chr1_3:70990177-70990196 None:intergenic 35.0%
CCGTTAGACCATTACTATAT+TGG - chr1_3:70990291-70990310 Msa0138210:CDS 35.0%
CAGTTGCACCAATATAGTAA+TGG + chr1_3:70990302-70990321 None:intergenic 35.0%
CATTACTATATTGGTGCAAC+TGG - chr1_3:70990300-70990319 Msa0138210:CDS 35.0%
TGCATATTAACCAAGACACA+TGG - chr1_3:70990425-70990444 Msa0138210:CDS 35.0%
GCATATTAACCAAGACACAT+GGG - chr1_3:70990426-70990445 Msa0138210:CDS 35.0%
! TTTGTTATATCACATGGGGT+TGG - chr1_3:70990633-70990652 Msa0138210:CDS 35.0%
TTCAGAGTAACAACCGAAAA+TGG - chr1_3:70990683-70990702 Msa0138210:CDS 35.0%
CAACCGAAAATGGTATAAGA+AGG - chr1_3:70990693-70990712 Msa0138210:CDS 35.0%
! GCACCTTCTTATACCATTTT+CGG + chr1_3:70990699-70990718 None:intergenic 35.0%
! ATAAGAAGGTGCAACAAGAT+TGG - chr1_3:70990707-70990726 Msa0138210:CDS 35.0%
! TAAGAAGGTGCAACAAGATT+GGG - chr1_3:70990708-70990727 Msa0138210:CDS 35.0%
CTTGTGAGAGCAGTTATTAT+AGG - chr1_3:70990883-70990902 Msa0138210:CDS 35.0%
CAGTTATTATAGGGCCATTT+GGG - chr1_3:70990893-70990912 Msa0138210:CDS 35.0%
! AACCCTAATTTGTATGAGGA+AGG - chr1_3:70991147-70991166 Msa0138210:CDS 35.0%
! ACCCTAATTTGTATGAGGAA+GGG - chr1_3:70991148-70991167 Msa0138210:CDS 35.0%
TCCCTTCCTCATACAAATTA+GGG + chr1_3:70991152-70991171 None:intergenic 35.0%
TTCCCTTCCTCATACAAATT+AGG + chr1_3:70991153-70991172 None:intergenic 35.0%
! TAATTTGTATGAGGAAGGGA+AGG - chr1_3:70991152-70991171 Msa0138210:CDS 35.0%
! TGAAGGATGCTAGAAGATTT+TGG + chr1_3:70991231-70991250 None:intergenic 35.0%
GTAGTGAAACTAGAACTTGA+AGG + chr1_3:70991248-70991267 None:intergenic 35.0%
!! CAAGTTCTAGTTTCACTACA+AGG - chr1_3:70991249-70991268 Msa0138210:CDS 35.0%
TATCCAGCTTCATTGAAGTA+AGG + chr1_3:70991294-70991313 None:intergenic 35.0%
AGACCATGATGTATCTTATG+CGG - chr1_3:70991391-70991410 Msa0138210:CDS 35.0%
TATTGCATACTTCGTTTCAC+TGG - chr1_3:70991500-70991519 Msa0138210:CDS 35.0%
!! ATTAAAAAAGGGTTGGTGCA+GGG - chr1_3:70991567-70991586 Msa0138210:CDS 35.0%
ATCTTCCTGATGTATTCTCT+AGG - chr1_3:70991864-70991883 Msa0138210:intron 35.0%
GCTTGTGATGCATATATGAA+GGG - chr1_3:70991943-70991962 Msa0138210:intron 35.0%
TATATGAAGGGCTACTTGAT+TGG - chr1_3:70991955-70991974 Msa0138210:intron 35.0%
AAACCAACAGAGGTTGAATT+TGG + chr1_3:70992021-70992040 None:intergenic 35.0%
!! TGTTGGTTTCAAGTTGATGT+TGG - chr1_3:70992032-70992051 Msa0138210:intron 35.0%
TACATGTGACCATACTCAAA+GGG + chr1_3:70992331-70992350 None:intergenic 35.0%
CAAAAGTCGTTGTTAATGGT+CGG - chr1_3:70992448-70992467 Msa0138210:intron 35.0%
!!! CTGGCGTCTTCATATTTTTT+TGG - chr1_3:70992593-70992612 Msa0138210:five_prime_UTR 35.0%
! TTGAGGTTGAATCGGTGTTT+CGG + chr1_3:70985760-70985779 None:intergenic 40.0%
!!! GAGGAATGAGCTAGTTTTTG+AGG + chr1_3:70985777-70985796 None:intergenic 40.0%
ACAAGAAACTCCATCAGGTT+CGG + chr1_3:70986378-70986397 None:intergenic 40.0%
GGGATTGTGACAGAAGTTAA+TGG - chr1_3:70986464-70986483 Msa0138210:intron 40.0%
TCAGATTCCGATTCAGATAG+TGG - chr1_3:70986509-70986528 Msa0138210:intron 40.0%
AGTGACTCCACTATCTGAAT+CGG + chr1_3:70986519-70986538 None:intergenic 40.0%
GATGTAGAAGTTGTTGATCG+TGG - chr1_3:70986707-70986726 Msa0138210:intron 40.0%
CTAAAGACTTGAAGCGTATC+AGG - chr1_3:70986855-70986874 Msa0138210:CDS 40.0%
CAATCTTCAAGATGGCTAGA+TGG - chr1_3:70987092-70987111 Msa0138210:intron 40.0%
TGGAAAGCAAGTAGGTTAGA+AGG - chr1_3:70987127-70987146 Msa0138210:intron 40.0%
ACTGTCACCAATGTTACAGT+TGG - chr1_3:70987151-70987170 Msa0138210:intron 40.0%
GTTTATTGGATAGCATCTGC+AGG - chr1_3:70987184-70987203 Msa0138210:CDS 40.0%
TGCTCATGCAAATTGGCAAT+TGG - chr1_3:70987279-70987298 Msa0138210:CDS 40.0%
GCTCATGCAAATTGGCAATT+GGG - chr1_3:70987280-70987299 Msa0138210:CDS 40.0%
GCTACAGTTGAGGAATCAAA+TGG - chr1_3:70987442-70987461 Msa0138210:CDS 40.0%
AAAGCTTTCCTCTTTCTTCC+GGG + chr1_3:70987659-70987678 None:intergenic 40.0%
CAAAGCTTTCCTCTTTCTTC+CGG + chr1_3:70987660-70987679 None:intergenic 40.0%
!! TGATCACCAGGAGTATCAAT+AGG + chr1_3:70987778-70987797 None:intergenic 40.0%
ATTATCCTCACCATCATCAG+AGG + chr1_3:70987836-70987855 None:intergenic 40.0%
TTTCCTCGTTGTCGAATTCT+CGG + chr1_3:70987957-70987976 None:intergenic 40.0%
TGTAAGTGTCTATGAGCTAG+AGG - chr1_3:70987978-70987997 Msa0138210:CDS 40.0%
GTAAGTGTCTATGAGCTAGA+GGG - chr1_3:70987979-70987998 Msa0138210:CDS 40.0%
AGCATCTAAACAGACAGACA+CGG + chr1_3:70988055-70988074 None:intergenic 40.0%
GTCTGTTTAGATGCTTCTGT+TGG - chr1_3:70988060-70988079 Msa0138210:CDS 40.0%
!! CAGAAGATGCTGTTTCTGTT+TGG + chr1_3:70988149-70988168 None:intergenic 40.0%
CAAACAGAAACAGCATCTTC+TGG - chr1_3:70988147-70988166 Msa0138210:CDS 40.0%
! ATTGAAGTTACATGGGCTGA+TGG - chr1_3:70988237-70988256 Msa0138210:CDS 40.0%
! TTGAAGTTACATGGGCTGAT+GGG - chr1_3:70988238-70988257 Msa0138210:CDS 40.0%
!! TCTGGTTGTGTTGTTTCTGT+CGG - chr1_3:70988400-70988419 Msa0138210:intron 40.0%
GAATCACTCTTCACAGAAAC+TGG + chr1_3:70988571-70988590 None:intergenic 40.0%
GTTTCTGTGAAGAGTGATTC+AGG - chr1_3:70988571-70988590 Msa0138210:CDS 40.0%
!!! GGAAGACCTTTTTGAAATGG+TGG - chr1_3:70988592-70988611 Msa0138210:CDS 40.0%
! TCTAATCCTTACTGATTGGG+AGG + chr1_3:70988685-70988704 None:intergenic 40.0%
TAGGCTTAACTCAACTCCAA+AGG + chr1_3:70988829-70988848 None:intergenic 40.0%
TCACTCAGAAATTGGGGTTT+AGG + chr1_3:70988848-70988867 None:intergenic 40.0%
ACTGTTCAACATGCTAGCAT+AGG + chr1_3:70989203-70989222 None:intergenic 40.0%
! CCTCATTTGAAGCTGTGAAT+TGG + chr1_3:70989271-70989290 None:intergenic 40.0%
CCAATTCACAGCTTCAAATG+AGG - chr1_3:70989268-70989287 Msa0138210:intron 40.0%
ACCAACCACATAGATTGCTT+GGG + chr1_3:70989469-70989488 None:intergenic 40.0%
TACCAACCACATAGATTGCT+TGG + chr1_3:70989470-70989489 None:intergenic 40.0%
TGATGAAATGGAAGTCCAAG+AGG - chr1_3:70989563-70989582 Msa0138210:intron 40.0%
GAAAGAGAAACAAACCTCTC+TGG + chr1_3:70989592-70989611 None:intergenic 40.0%
TAAACTTGCCTCTTTCTCAG+AGG - chr1_3:70989636-70989655 Msa0138210:intron 40.0%
CAAATCCATTTATCGAAGGG+AGG + chr1_3:70989774-70989793 None:intergenic 40.0%
AGCAATGTTGCAGAAGAGAA+TGG - chr1_3:70989904-70989923 Msa0138210:CDS 40.0%
CAAATCGAATTGCTGCAAGT+GGG + chr1_3:70989966-70989985 None:intergenic 40.0%
ACAAATCGAATTGCTGCAAG+TGG + chr1_3:70989967-70989986 None:intergenic 40.0%
!!! CTGGACTCGCATATTTTAAC+TGG + chr1_3:70990081-70990100 None:intergenic 40.0%
! GGCAATACATTTCTGAGAAC+TGG + chr1_3:70990100-70990119 None:intergenic 40.0%
!! TGCCATTGATGGTGACAATT+TGG - chr1_3:70990116-70990135 Msa0138210:CDS 40.0%
!! GCCATTGATGGTGACAATTT+GGG - chr1_3:70990117-70990136 Msa0138210:CDS 40.0%
ACCCAAATTGTCACCATCAA+TGG + chr1_3:70990121-70990140 None:intergenic 40.0%
!! AAAATGTGGAAGCATCTGAG+AGG - chr1_3:70990187-70990206 Msa0138210:CDS 40.0%
! TTCGGTTGTTACTCTGAAAG+TGG + chr1_3:70990681-70990700 None:intergenic 40.0%
! AAGAAGGTGCAACAAGATTG+GGG - chr1_3:70990709-70990728 Msa0138210:CDS 40.0%
GCAGTTATTATAGGGCCATT+TGG - chr1_3:70990892-70990911 Msa0138210:CDS 40.0%
AAAAACAGCCCATCTTGGTA+AGG + chr1_3:70990922-70990941 None:intergenic 40.0%
CAAAGAAAAACAGCCCATCT+TGG + chr1_3:70990927-70990946 None:intergenic 40.0%
AGATTATCCTGATGTTCCAC+CGG - chr1_3:70990963-70990982 Msa0138210:CDS 40.0%
GCTTCAAAATAAGGCCTTAC+CGG + chr1_3:70990985-70991004 None:intergenic 40.0%
AGACATGAGATGCATTCATG+TGG + chr1_3:70991059-70991078 None:intergenic 40.0%
TCTTCCTGTGTTCTTTGTTG+TGG - chr1_3:70991076-70991095 Msa0138210:CDS 40.0%
! TTCTTTGTTGTGGCCTCAAA+TGG - chr1_3:70991086-70991105 Msa0138210:CDS 40.0%
GCAGTCAGCATACTATCATT+CGG - chr1_3:70991110-70991129 Msa0138210:CDS 40.0%
CAGTCAGCATACTATCATTC+GGG - chr1_3:70991111-70991130 Msa0138210:CDS 40.0%
TCCATGTGTTTAGAAGGCTA+AGG + chr1_3:70991182-70991201 None:intergenic 40.0%
AGCTTCATTGAAGTAAGGCT+TGG + chr1_3:70991289-70991308 None:intergenic 40.0%
AAGCCTTACTTCAATGAAGC+TGG - chr1_3:70991288-70991307 Msa0138210:CDS 40.0%
CTTCCGCATAAGATACATCA+TGG + chr1_3:70991397-70991416 None:intergenic 40.0%
CATTCACAATCACCAACCTT+GGG + chr1_3:70991423-70991442 None:intergenic 40.0%
TCATTCACAATCACCAACCT+TGG + chr1_3:70991424-70991443 None:intergenic 40.0%
!!! CTGCACCAACCCTTTTTTAA+TGG + chr1_3:70991568-70991587 None:intergenic 40.0%
!! CATTAAAAAAGGGTTGGTGC+AGG - chr1_3:70991566-70991585 Msa0138210:CDS 40.0%
GAAGGAACACGTAGTAAACA+AGG - chr1_3:70991667-70991686 Msa0138210:CDS 40.0%
GACTTCATGACACTTGCTTT+GGG + chr1_3:70991722-70991741 None:intergenic 40.0%
AGACTTCATGACACTTGCTT+TGG + chr1_3:70991723-70991742 None:intergenic 40.0%
!! AAAGAACATTTTAGGAGGCG+TGG - chr1_3:70991904-70991923 Msa0138210:intron 40.0%
GCGTGGTCATTACATTCTTA+AGG - chr1_3:70991921-70991940 Msa0138210:intron 40.0%
GGCTTGTGATGCATATATGA+AGG - chr1_3:70991942-70991961 Msa0138210:intron 40.0%
AGTCCAAATTCAACCTCTGT+TGG - chr1_3:70992015-70992034 Msa0138210:intron 40.0%
CATCAACTTGAAACCAACAG+AGG + chr1_3:70992031-70992050 None:intergenic 40.0%
CTAAGTGACACGAAAAGCTT+TGG + chr1_3:70992069-70992088 None:intergenic 40.0%
!! TTCGTGTCACTTAGTGAAGT+TGG - chr1_3:70992075-70992094 Msa0138210:intron 40.0%
!! TCGTGTCACTTAGTGAAGTT+GGG - chr1_3:70992076-70992095 Msa0138210:intron 40.0%
CTTCAAATTGCGAGAGTGAT+TGG + chr1_3:70992155-70992174 None:intergenic 40.0%
CAATCACTCTCGCAATTTGA+AGG - chr1_3:70992153-70992172 Msa0138210:intron 40.0%
TCAAGCTCCTAGAAGTGAAT+TGG + chr1_3:70992253-70992272 None:intergenic 40.0%
! ATTCACTTCTAGGAGCTTGA+AGG - chr1_3:70992253-70992272 Msa0138210:intron 40.0%
GCTGAATATCCCTTTGAGTA+TGG - chr1_3:70992319-70992338 Msa0138210:intron 40.0%
CTACATGTGACCATACTCAA+AGG + chr1_3:70992332-70992351 None:intergenic 40.0%
TTGAGTATGGTCACATGTAG+AGG - chr1_3:70992332-70992351 Msa0138210:intron 40.0%
TGAGTATGGTCACATGTAGA+GGG - chr1_3:70992333-70992352 Msa0138210:intron 40.0%
TTGAATATTTGGACAGAGGG+TGG - chr1_3:70992400-70992419 Msa0138210:intron 40.0%
GAAGCTTATGAGCGTAGAAA+AGG + chr1_3:70992570-70992589 None:intergenic 40.0%
TACGCTCATAAGCTTCTTAC+TGG - chr1_3:70992574-70992593 Msa0138210:five_prime_UTR 40.0%
CGAAGAAAGAAGAAGGAGCT+CGG + chr1_3:70985614-70985633 None:intergenic 45.0%
! TCGGCATTAGCATTTTCAGC+CGG + chr1_3:70986359-70986378 None:intergenic 45.0%
AATGCTAATGCCGAACCTGA+TGG - chr1_3:70986365-70986384 Msa0138210:intron 45.0%
! TAGTGGAGTCACTGATGATG+AGG - chr1_3:70986526-70986545 Msa0138210:intron 45.0%
! AGTCACTGATGATGAGGTTG+AGG - chr1_3:70986532-70986551 Msa0138210:intron 45.0%
! ACTGATGATGAGGTTGAGGA+GGG - chr1_3:70986536-70986555 Msa0138210:intron 45.0%
TCTGAAGAGCAGCAGTCTTA+CGG + chr1_3:70986631-70986650 None:intergenic 45.0%
TTTCACTGCTGGAGATTACG+TGG - chr1_3:70986880-70986899 Msa0138210:CDS 45.0%
AAGATCCATCGGATCTGCTT+TGG + chr1_3:70986990-70987009 None:intergenic 45.0%
GGCATTTCCCTTATTACCCA+GGG - chr1_3:70987044-70987063 Msa0138210:intron 45.0%
AAGATGGCTAGATGGTTGTC+TGG - chr1_3:70987100-70987119 Msa0138210:intron 45.0%
CACGGATCCAACTGTAACAT+TGG + chr1_3:70987161-70987180 None:intergenic 45.0%
CAAATTGGCAATTGGGTGAC+CGG - chr1_3:70987287-70987306 Msa0138210:CDS 45.0%
CAGATGAGTGCAAAAGACAC+CGG + chr1_3:70987309-70987328 None:intergenic 45.0%
TTCAGAAGACGCTACAGTTG+AGG - chr1_3:70987432-70987451 Msa0138210:CDS 45.0%
TACTATGGACCTTGATCCAG+TGG - chr1_3:70987474-70987493 Msa0138210:intron 45.0%
ACTATGGACCTTGATCCAGT+GGG - chr1_3:70987475-70987494 Msa0138210:intron 45.0%
TCAGGAAAGAAAAGAGAGCC+CGG - chr1_3:70987638-70987657 Msa0138210:intron 45.0%
!! GGACAAGAGTTGATGTTGCT+TGG - chr1_3:70987707-70987726 Msa0138210:intron 45.0%
!! AAGAGTTGATGTTGCTTGGC+AGG - chr1_3:70987711-70987730 Msa0138210:intron 45.0%
GTAGAGAAGACCTCTGATGA+TGG - chr1_3:70987823-70987842 Msa0138210:intron 45.0%
AATTGTGAAACCAGCCGAGT+TGG - chr1_3:70987853-70987872 Msa0138210:CDS 45.0%
ATTGTGAAACCAGCCGAGTT+GGG - chr1_3:70987854-70987873 Msa0138210:CDS 45.0%
TTCCTCGTTGTCGAATTCTC+GGG + chr1_3:70987956-70987975 None:intergenic 45.0%
GCATCTAAACAGACAGACAC+GGG + chr1_3:70988054-70988073 None:intergenic 45.0%
GTCTACTGAGAAATCGAAGC+AGG - chr1_3:70988086-70988105 Msa0138210:CDS 45.0%
ATCTTCTGGCGAAACTGATG+TGG - chr1_3:70988161-70988180 Msa0138210:CDS 45.0%
CACTCTTCACAGAAACTGGA+AGG + chr1_3:70988567-70988586 None:intergenic 45.0%
!! CTTGTTGGGCTGGTAAAATC+TGG - chr1_3:70988644-70988663 Msa0138210:CDS 45.0%
ATTGGGAGGACTCTATAAGC+TGG + chr1_3:70988671-70988690 None:intergenic 45.0%
TAGAGTCCTCCCAATCAGTA+AGG - chr1_3:70988676-70988695 Msa0138210:CDS 45.0%
! AAAGGCTAGCTCAAGAGATG+GGG + chr1_3:70988811-70988830 None:intergenic 45.0%
! CAAAGGCTAGCTCAAGAGAT+GGG + chr1_3:70988812-70988831 None:intergenic 45.0%
ACCTCAGTAGCAAAAGGAAC+AGG + chr1_3:70989170-70989189 None:intergenic 45.0%
CCAACCACATAGATTGCTTG+GGG + chr1_3:70989468-70989487 None:intergenic 45.0%
ATGCTGAATCACTTGCAGCA+GGG - chr1_3:70989499-70989518 Msa0138210:intron 45.0%
ATATAAGCGATGCTGCAACC+TGG - chr1_3:70989526-70989545 Msa0138210:intron 45.0%
TATAAGCGATGCTGCAACCT+GGG - chr1_3:70989527-70989546 Msa0138210:intron 45.0%
ATCATCATCAACGGTTTCCC+AGG + chr1_3:70989547-70989566 None:intergenic 45.0%
!! AAACCTCTCTGGAATCCTCT+TGG + chr1_3:70989581-70989600 None:intergenic 45.0%
! TTAGGCTTCCTCTGAGAAAG+AGG + chr1_3:70989647-70989666 None:intergenic 45.0%
TCTTTCTCAGAGGAAGCCTA+AGG - chr1_3:70989646-70989665 Msa0138210:intron 45.0%
CTTTCTCAGAGGAAGCCTAA+GGG - chr1_3:70989647-70989666 Msa0138210:intron 45.0%
! CAGGTGACAGATTTTCCCTT+AGG + chr1_3:70989665-70989684 None:intergenic 45.0%
CTAAGGGAAAATCTGTCACC+TGG - chr1_3:70989663-70989682 Msa0138210:intron 45.0%
CAGTTCCTCCCTTCGATAAA+TGG - chr1_3:70989766-70989785 Msa0138210:intron 45.0%
GAGAATGGAGAGAAAGACTC+TGG - chr1_3:70989919-70989938 Msa0138210:CDS 45.0%
ATGGAGAGAAAGACTCTGGT+AGG - chr1_3:70989923-70989942 Msa0138210:CDS 45.0%
TTTGTAACCAGACTTGCGTC+TGG - chr1_3:70989982-70990001 Msa0138210:CDS 45.0%
GAATATTCCAGACGCAAGTC+TGG + chr1_3:70989992-70990011 None:intergenic 45.0%
! TTGCGTCTGGAATATTCTCC+AGG - chr1_3:70989995-70990014 Msa0138210:CDS 45.0%
! TGCGTCTGGAATATTCTCCA+GGG - chr1_3:70989996-70990015 Msa0138210:CDS 45.0%
GCATCATTGTCACAACTAGC+AGG + chr1_3:70990237-70990256 None:intergenic 45.0%
CTATATTGGTGCAACTGGAC+AGG - chr1_3:70990305-70990324 Msa0138210:CDS 45.0%
GTTATATCACATGGGGTTGG+AGG - chr1_3:70990636-70990655 Msa0138210:CDS 45.0%
TCTTGGTAAGGAGTCCCAAA+TGG + chr1_3:70990910-70990929 None:intergenic 45.0%
! TTTGGGACTCCTTACCAAGA+TGG - chr1_3:70990910-70990929 Msa0138210:CDS 45.0%
TTGGGACTCCTTACCAAGAT+GGG - chr1_3:70990911-70990930 Msa0138210:CDS 45.0%
GGAACATCAGGATAATCTGG+CGG + chr1_3:70990961-70990980 None:intergenic 45.0%
GGTGGAACATCAGGATAATC+TGG + chr1_3:70990964-70990983 None:intergenic 45.0%
TCAAAATAAGGCCTTACCGG+TGG + chr1_3:70990982-70991001 None:intergenic 45.0%
! TATGCTGACTGCACCATTTG+AGG + chr1_3:70991102-70991121 None:intergenic 45.0%
TCAGCATACTATCATTCGGG+TGG - chr1_3:70991114-70991133 Msa0138210:CDS 45.0%
CATACTATCATTCGGGTGGT+TGG - chr1_3:70991118-70991137 Msa0138210:CDS 45.0%
! GCCTTAGCCTTCTAAACACA+TGG - chr1_3:70991178-70991197 Msa0138210:CDS 45.0%
AGCCTTCTAAACACATGGAC+AGG - chr1_3:70991183-70991202 Msa0138210:CDS 45.0%
TGCCTGTCCATGTGTTTAGA+AGG + chr1_3:70991188-70991207 None:intergenic 45.0%
AGGCAGAGGCAATGAAGTAT+GGG - chr1_3:70991203-70991222 Msa0138210:CDS 45.0%
GCTGGATATGATAAGCAGAC+TGG - chr1_3:70991306-70991325 Msa0138210:CDS 45.0%
!! TGACACTTGCTTTGGGAGAA+TGG + chr1_3:70991715-70991734 None:intergenic 45.0%
ACTGCTATTGTCACTCACAG+AGG + chr1_3:70991998-70992017 None:intergenic 45.0%
! GAAAAGCTTTGGCGCTATCT+TGG + chr1_3:70992058-70992077 None:intergenic 45.0%
!! CGTGTCACTTAGTGAAGTTG+GGG - chr1_3:70992077-70992096 Msa0138210:intron 45.0%
GGAGCTTGAAGGAACAGAAT+TGG - chr1_3:70992264-70992283 Msa0138210:intron 45.0%
GAAGCAAACACTAACAGAGC+AGG - chr1_3:70992297-70992316 Msa0138210:intron 45.0%
TATTTGGACAGAGGGTGGAA+AGG - chr1_3:70992405-70992424 Msa0138210:intron 45.0%
ATTTGGACAGAGGGTGGAAA+GGG - chr1_3:70992406-70992425 Msa0138210:intron 45.0%
GTTAATGGTCGGTCTTGCAA+TGG - chr1_3:70992459-70992478 Msa0138210:intron 45.0%
!! GGTTTGTTAACTCGTGTGTG+AGG - chr1_3:70992480-70992499 Msa0138210:intron 45.0%
! AGCGTAGAAAAGGAGTGCAA+GGG + chr1_3:70992560-70992579 None:intergenic 45.0%
!! GTGTTGCTTATGAGACTTGG+AGG + chr1_3:70992638-70992657 None:intergenic 45.0%
!! CGTGTGTTGCTTATGAGACT+TGG + chr1_3:70992641-70992660 None:intergenic 45.0%
!! AAAAAAAAAATCAATAAATT+GGG + chr1_3:70986109-70986128 None:intergenic 5.0%
!! AAAAAAAAAAATCAATAAAT+TGG + chr1_3:70986110-70986129 None:intergenic 5.0%
!! TTTGTTGTTGCAGCGGCGTA+GGG + chr1_3:70985510-70985529 None:intergenic 50.0%
!! ATTTGTTGTTGCAGCGGCGT+AGG + chr1_3:70985511-70985530 None:intergenic 50.0%
! CACTGATGATGAGGTTGAGG+AGG - chr1_3:70986535-70986554 Msa0138210:intron 50.0%
CTAACGAGCTACGTGTACTC+TGG - chr1_3:70986651-70986670 Msa0138210:intron 50.0%
!! GTGGATTTGTTGGCCCATGA+TGG - chr1_3:70986809-70986828 Msa0138210:CDS 50.0%
CGTATCAGGGATTTCACTGC+TGG - chr1_3:70986869-70986888 Msa0138210:CDS 50.0%
AGTCTCCAAAGCAGATCCGA+TGG - chr1_3:70986982-70987001 Msa0138210:CDS 50.0%
GGGCATTTCCCTTATTACCC+AGG - chr1_3:70987043-70987062 Msa0138210:intron 50.0%
TCCCTTATTACCCAGGGCAA+CGG - chr1_3:70987050-70987069 Msa0138210:intron 50.0%
! CTAGATGGTTGTCTGGCTTG+TGG - chr1_3:70987107-70987126 Msa0138210:intron 50.0%
! CTGGCTTGTGGAAAGCAAGT+AGG - chr1_3:70987119-70987138 Msa0138210:intron 50.0%
TGGATAGCATCTGCAGGTCA+TGG - chr1_3:70987190-70987209 Msa0138210:CDS 50.0%
GGATAGCATCTGCAGGTCAT+GGG - chr1_3:70987191-70987210 Msa0138210:CDS 50.0%
TTGGACTCTGTTCCTCAGCT+GGG + chr1_3:70987234-70987253 None:intergenic 50.0%
TTTGGACTCTGTTCCTCAGC+TGG + chr1_3:70987235-70987254 None:intergenic 50.0%
!! ATCCAGTGGGTGCTTTGGAA+GGG - chr1_3:70987488-70987507 Msa0138210:intron 50.0%
!! GGTGCTTTGGAAGGGAATGA+TGG - chr1_3:70987496-70987515 Msa0138210:intron 50.0%
AAAGAGAGCCCGGAAGAAAG+AGG - chr1_3:70987648-70987667 Msa0138210:intron 50.0%
! GTTGATGTTGCTTGGCAGGA+TGG - chr1_3:70987715-70987734 Msa0138210:intron 50.0%
CTTGGCAGGATGGAACGATA+GGG - chr1_3:70987725-70987744 Msa0138210:intron 50.0%
!! GAAGACCTCTGATGATGGTG+AGG - chr1_3:70987828-70987847 Msa0138210:intron 50.0%
TTGTGAAACCAGCCGAGTTG+GGG - chr1_3:70987855-70987874 Msa0138210:CDS 50.0%
!! GGAGTGTTGATGCCAAAGAG+CGG - chr1_3:70987884-70987903 Msa0138210:CDS 50.0%
GTGGATAAAACCAGCTGCCA+AGG - chr1_3:70987921-70987940 Msa0138210:CDS 50.0%
TTCTCGGGGATCATCAACCT+TGG + chr1_3:70987941-70987960 None:intergenic 50.0%
TCCTCGTTGTCGAATTCTCG+GGG + chr1_3:70987955-70987974 None:intergenic 50.0%
! TGAGTATTGCTATGGGGACG+TGG - chr1_3:70988014-70988033 Msa0138210:CDS 50.0%
TGGAGTTCTCAGACCTCTCT+TGG - chr1_3:70988181-70988200 Msa0138210:CDS 50.0%
GGAGTTCTCAGACCTCTCTT+GGG - chr1_3:70988182-70988201 Msa0138210:CDS 50.0%
TTCTCAGACCTCTCTTGGGT+TGG - chr1_3:70988186-70988205 Msa0138210:CDS 50.0%
! AGTTACATGGGCTGATGGGA+TGG - chr1_3:70988242-70988261 Msa0138210:CDS 50.0%
GGCTGATGGGATGGTATCAA+CGG - chr1_3:70988251-70988270 Msa0138210:CDS 50.0%
!! GGTTGTGTTGTTTCTGTCGG+TGG - chr1_3:70988403-70988422 Msa0138210:intron 50.0%
TTCTGTCGGTGGAAATGCCA+AGG - chr1_3:70988414-70988433 Msa0138210:intron 50.0%
!! CTTTAGGATGCTTGTTGGGC+TGG - chr1_3:70988634-70988653 Msa0138210:CDS 50.0%
! CCAAAGGCTAGCTCAAGAGA+TGG + chr1_3:70988813-70988832 None:intergenic 50.0%
!! CCATCTCTTGAGCTAGCCTT+TGG - chr1_3:70988810-70988829 Msa0138210:intron 50.0%
! GCCTGTTCCTTTTGCTACTG+AGG - chr1_3:70989166-70989185 Msa0138210:intron 50.0%
TGGACCCCAAGCAATCTATG+TGG - chr1_3:70989461-70989480 Msa0138210:intron 50.0%
CCCCAAGCAATCTATGTGGT+TGG - chr1_3:70989465-70989484 Msa0138210:intron 50.0%
GATGCTGAATCACTTGCAGC+AGG - chr1_3:70989498-70989517 Msa0138210:intron 50.0%
AGTCCAAGAGGATTCCAGAG+AGG - chr1_3:70989575-70989594 Msa0138210:intron 50.0%
CATGGGCCAACTAGAGATGT+TGG - chr1_3:70989811-70989830 Msa0138210:intron 50.0%
! GCGTCTGGAATATTCTCCAG+GGG - chr1_3:70989997-70990016 Msa0138210:CDS 50.0%
ATCCAAGTTCTTCTGTCCCC+TGG + chr1_3:70990016-70990035 None:intergenic 50.0%
CCATTTGACTGCACGTGAAC+AGG + chr1_3:70990039-70990058 None:intergenic 50.0%
CCTGTTCACGTGCAGTCAAA+TGG - chr1_3:70990036-70990055 Msa0138210:CDS 50.0%
AAGTGCATGCCCATGTGTCT+TGG + chr1_3:70990438-70990457 None:intergenic 50.0%
TCACTGTTCACTGACCAGGA+AGG + chr1_3:70990750-70990769 None:intergenic 50.0%
ATCGTCACTGTTCACTGACC+AGG + chr1_3:70990754-70990773 None:intergenic 50.0%
CATCAGGATAATCTGGCGGA+AGG + chr1_3:70990957-70990976 None:intergenic 50.0%
ATCCTGATGTTCCACCGGTA+AGG - chr1_3:70990968-70990987 Msa0138210:CDS 50.0%
GAGGCCACAACAAAGAACAC+AGG + chr1_3:70991083-70991102 None:intergenic 50.0%
CTAAACACATGGACAGGCAG+AGG - chr1_3:70991189-70991208 Msa0138210:CDS 50.0%
CAGGCAGAGGCAATGAAGTA+TGG - chr1_3:70991202-70991221 Msa0138210:CDS 50.0%
AAGCAGACTGGAACAGCTGA+AGG - chr1_3:70991318-70991337 Msa0138210:CDS 50.0%
TCACAATCACCAACCTTGGG+TGG + chr1_3:70991420-70991439 None:intergenic 50.0%
GTATGGTCACATGTAGAGGG+AGG - chr1_3:70992336-70992355 Msa0138210:intron 50.0%
! AAGGAGTGCAAGGGGAAAGA+AGG + chr1_3:70992551-70992570 None:intergenic 50.0%
! GCGTAGAAAAGGAGTGCAAG+GGG + chr1_3:70992559-70992578 None:intergenic 50.0%
! GAGCGTAGAAAAGGAGTGCA+AGG + chr1_3:70992561-70992580 None:intergenic 50.0%
! TTGTTGTTGCAGCGGCGTAG+GGG + chr1_3:70985509-70985528 None:intergenic 55.0%
GGTTGAGGAGGGTGATGTTG+AGG - chr1_3:70986547-70986566 Msa0138210:intron 55.0%
GAGGAGGGTGATGTTGAGGA+AGG - chr1_3:70986551-70986570 Msa0138210:intron 55.0%
CGAGCTACGTGTACTCTGGA+TGG - chr1_3:70986655-70986674 Msa0138210:intron 55.0%
AACCACAACACCCACTTGCC+CGG + chr1_3:70986774-70986793 None:intergenic 55.0%
GCTGGAGATTACGTGGTGCT+CGG - chr1_3:70986887-70986906 Msa0138210:CDS 55.0%
CTGGAGATTACGTGGTGCTC+GGG - chr1_3:70986888-70986907 Msa0138210:CDS 55.0%
ATTACGTGGTGCTCGGGTCT+TGG - chr1_3:70986894-70986913 Msa0138210:CDS 55.0%
CCCGTTGCCCTGGGTAATAA+GGG + chr1_3:70987054-70987073 None:intergenic 55.0%
CCCTTATTACCCAGGGCAAC+GGG - chr1_3:70987051-70987070 Msa0138210:intron 55.0%
ACCCGTTGCCCTGGGTAATA+AGG + chr1_3:70987055-70987074 None:intergenic 55.0%
ATTACCCAGGGCAACGGGTA+AGG - chr1_3:70987056-70987075 Msa0138210:intron 55.0%
TTACCCAGGGCAACGGGTAA+GGG - chr1_3:70987057-70987076 Msa0138210:intron 55.0%
GCTGGGGCAGCAGAAGAATA+TGG + chr1_3:70987217-70987236 None:intergenic 55.0%
TGGACTCTGTTCCTCAGCTG+GGG + chr1_3:70987233-70987252 None:intergenic 55.0%
! CCAAAGCACCCACTGGATCA+AGG + chr1_3:70987486-70987505 None:intergenic 55.0%
CCTTGATCCAGTGGGTGCTT+TGG - chr1_3:70987483-70987502 Msa0138210:intron 55.0%
! GATCCAGTGGGTGCTTTGGA+AGG - chr1_3:70987487-70987506 Msa0138210:intron 55.0%
! TTCCCTTCCAAAGCACCCAC+TGG + chr1_3:70987493-70987512 None:intergenic 55.0%
AGGATCCTGTCCGTGAAGCT+TGG - chr1_3:70987581-70987600 Msa0138210:intron 55.0%
GGTGAAGAGGCCAAGCTTCA+CGG + chr1_3:70987594-70987613 None:intergenic 55.0%
GCTTGGCAGGATGGAACGAT+AGG - chr1_3:70987724-70987743 Msa0138210:intron 55.0%
CAGGATGGAACGATAGGGTG+TGG - chr1_3:70987730-70987749 Msa0138210:intron 55.0%
CACACAAGCTGTCCGCTCTT+TGG + chr1_3:70987899-70987918 None:intergenic 55.0%
AAGAGCGGACAGCTTGTGTG+AGG - chr1_3:70987899-70987918 Msa0138210:CDS 55.0%
GGATCATCAACCTTGGCAGC+TGG + chr1_3:70987934-70987953 None:intergenic 55.0%
TCCCCGAGAATTCGACAACG+AGG - chr1_3:70987951-70987970 Msa0138210:CDS 55.0%
AGATTGCTTGGGGTCCAACC+TGG + chr1_3:70989458-70989477 None:intergenic 55.0%
GAAAGACTCTGGTAGGACCG+CGG - chr1_3:70989930-70989949 Msa0138210:CDS 55.0%
!! AAGTGGGACAGAAAGTGCCG+CGG + chr1_3:70989950-70989969 None:intergenic 55.0%
CTCCAGGGGACAGAAGAACT+TGG - chr1_3:70990011-70990030 Msa0138210:CDS 55.0%
TCTTATGCGGAAGCCACCCA+AGG - chr1_3:70991404-70991423 Msa0138210:CDS 55.0%
GCTTCTGCCTCTGACCCTAC+CGG - chr1_3:70986752-70986771 Msa0138210:CDS 60.0%
CTTCTGCCTCTGACCCTACC+GGG - chr1_3:70986753-70986772 Msa0138210:CDS 60.0%
TCTGACCCTACCGGGCAAGT+GGG - chr1_3:70986761-70986780 Msa0138210:CDS 60.0%
CAACACCCACTTGCCCGGTA+GGG + chr1_3:70986769-70986788 None:intergenic 60.0%
ACAACACCCACTTGCCCGGT+AGG + chr1_3:70986770-70986789 None:intergenic 60.0%
! TACCGGGCAAGTGGGTGTTG+TGG - chr1_3:70986769-70986788 Msa0138210:CDS 60.0%
GTGGTGCTCGGGTCTTGGTT+AGG - chr1_3:70986899-70986918 Msa0138210:CDS 60.0%
TTCTTCTGCTGCCCCAGCTG+AGG - chr1_3:70987219-70987238 Msa0138210:CDS 60.0%
AGAGGCCAAGCTTCACGGAC+AGG + chr1_3:70987589-70987608 None:intergenic 60.0%
! TGAAACCAGCCGAGTTGGGG+TGG - chr1_3:70987858-70987877 Msa0138210:CDS 60.0%
CACTCCTCACCACCCCAACT+CGG + chr1_3:70987870-70987889 None:intergenic 60.0%
AGCGGACAGCTTGTGTGAGG+TGG - chr1_3:70987902-70987921 Msa0138210:CDS 60.0%
GGCCTTACCGGTGGAACATC+AGG + chr1_3:70990973-70990992 None:intergenic 60.0%
ATGCGGAAGCCACCCAAGGT+TGG - chr1_3:70991408-70991427 Msa0138210:CDS 60.0%
GGACAGAGGGTGGAAAGGGT+TGG - chr1_3:70992410-70992429 Msa0138210:intron 60.0%
CACTTGCCCGGTAGGGTCAG+AGG + chr1_3:70986762-70986781 None:intergenic 65.0%
CTCTGACCCTACCGGGCAAG+TGG - chr1_3:70986760-70986779 Msa0138210:CDS 65.0%
TGGCCCTTACCCGTTGCCCT+GGG + chr1_3:70987063-70987082 None:intergenic 65.0%
TTGGCCCTTACCCGTTGCCC+TGG + chr1_3:70987064-70987083 None:intergenic 65.0%
CCTCACCACCCCAACTCGGC+TGG + chr1_3:70987866-70987885 None:intergenic 70.0%
! CCAGCCGAGTTGGGGTGGTG+AGG - chr1_3:70987863-70987882 Msa0138210:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 70985470 70992688 70985470 ID=Msa0138210;Name=Msa0138210
chr1_3 mRNA 70985470 70992688 70985470 ID=Msa0138210-mRNA-1;Parent=Msa0138210;Name=Msa0138210-mRNA-1;_AED=0.09;_eAED=0.09;_QI=163|1|1|1|0.75|0.66|9|477|1103
chr1_3 exon 70985470 70985909 70985470 ID=Msa0138210-mRNA-1:exon:24681;Parent=Msa0138210-mRNA-1
chr1_3 exon 70985984 70986272 70985984 ID=Msa0138210-mRNA-1:exon:24680;Parent=Msa0138210-mRNA-1
chr1_3 exon 70986733 70987044 70986733 ID=Msa0138210-mRNA-1:exon:24679;Parent=Msa0138210-mRNA-1
chr1_3 exon 70987174 70987313 70987174 ID=Msa0138210-mRNA-1:exon:24678;Parent=Msa0138210-mRNA-1
chr1_3 exon 70987404 70987470 70987404 ID=Msa0138210-mRNA-1:exon:24677;Parent=Msa0138210-mRNA-1
chr1_3 exon 70987832 70988275 70987832 ID=Msa0138210-mRNA-1:exon:24676;Parent=Msa0138210-mRNA-1
chr1_3 exon 70988562 70988699 70988562 ID=Msa0138210-mRNA-1:exon:24675;Parent=Msa0138210-mRNA-1
chr1_3 exon 70989886 70991844 70989886 ID=Msa0138210-mRNA-1:exon:24674;Parent=Msa0138210-mRNA-1
chr1_3 exon 70992526 70992688 70992526 ID=Msa0138210-mRNA-1:exon:24673;Parent=Msa0138210-mRNA-1
chr1_3 five_prime_UTR 70992526 70992688 70992526 ID=Msa0138210-mRNA-1:five_prime_utr;Parent=Msa0138210-mRNA-1
chr1_3 CDS 70989886 70991844 70989886 ID=Msa0138210-mRNA-1:cds;Parent=Msa0138210-mRNA-1
chr1_3 CDS 70988562 70988699 70988562 ID=Msa0138210-mRNA-1:cds;Parent=Msa0138210-mRNA-1
chr1_3 CDS 70987832 70988275 70987832 ID=Msa0138210-mRNA-1:cds;Parent=Msa0138210-mRNA-1
chr1_3 CDS 70987404 70987470 70987404 ID=Msa0138210-mRNA-1:cds;Parent=Msa0138210-mRNA-1
chr1_3 CDS 70987174 70987313 70987174 ID=Msa0138210-mRNA-1:cds;Parent=Msa0138210-mRNA-1
chr1_3 CDS 70986733 70987044 70986733 ID=Msa0138210-mRNA-1:cds;Parent=Msa0138210-mRNA-1
chr1_3 CDS 70986021 70986272 70986021 ID=Msa0138210-mRNA-1:cds;Parent=Msa0138210-mRNA-1
chr1_3 three_prime_UTR 70985984 70986020 70985984 ID=Msa0138210-mRNA-1:three_prime_utr;Parent=Msa0138210-mRNA-1
chr1_3 three_prime_UTR 70985470 70985909 70985470 ID=Msa0138210-mRNA-1:three_prime_utr;Parent=Msa0138210-mRNA-1
Gene Sequence

>Msa0138210

ATGGAAGTTCAACAACATGAAGCACATTCTGAAAACAAAGAGCCGGCTGAAAATGCTAATGCCGAACCTGATGGAGTTTCTTGTAAGAAAAGCAATACTATGCAAATTTATAGACAAGATGTTGTCAAGAATAAAAACACTGGGATGGTTGGGATTGTGACAGAAGTTAATGGTGATTCTGATTCGGATTCAGATTCAGATTCCGATTCAGATAGTGGAGTCACTGATGATGAGGTTGAGGAGGGTGATGTTGAGGAAGGTGATGAAAGTAATAATGGTTGCAGAAATTCTGATAGGAATGATACTTCTGTGCACCGTAAGACTGCTGCTCTTCAGACTAACGAGCTACGTGTACTCTGGATGGATGAATCTGAATCCACACAGAATTTCAGTGATGTAGAAGTTGTTGATCGTGGATTTTTACATAGTGATTTTGTAGCTTCTGCCTCTGACCCTACCGGGCAAGTGGGTGTTGTGGTTGATGTCAATATATCTGTGGATTTGTTGGCCCATGATGGATCTATCATAAAAGATGTCTCATCTAAAGACTTGAAGCGTATCAGGGATTTCACTGCTGGAGATTACGTGGTGCTCGGGTCTTGGTTAGGAAAAGTTGATGATGTTTTGGATAATGTGACTGTCTTATTTGATGATGGTTCAGTTTGTAAAGTCTCCAAAGCAGATCCGATGGATCTTAAACCAATTTCGAAGAACAATATTCTTGAAGATGGGCATTTCCCTTATTACCCAGGGCAACGGGTAAGGGCCAAGTCTTCATCAATCTTCAAGATGGCTAGATGGTTGTCTGGCTTGTGGAAAGCAAGTAGGTTAGAAGGTACTGTCACCAATGTTACAGTTGGATCCGTGTTTGTTTATTGGATAGCATCTGCAGGTCATGGGCCATATTCTTCTGCTGCCCCAGCTGAGGAACAGAGTCCAAAAAACTTAAAATTGCTGTCTTGTTTTGCTCATGCAAATTGGCAATTGGGTGACCGGTGTCTTTTGCACTCATCTGCACTGTCATCTTCTGTTTCCATCAACAAAAACAAATCAAAATTGGAACATAACGATTCTGTTACCATTGAATTAGATTCTAATCAAACAGGAAGCGGGTGTGATTCAGAAGACGCTACAGTTGAGGAATCAAATGGGAATAAAGATACTATGGACCTTGATCCAGTGGGTGCTTTGGAAGGGAATGATGGAAATGATAGAAATAATCCTTCATGTGAATCTAGTTCATGTGGTAGTTCTATATCAGTATCAAAGGATCCTGTCCGTGAAGCTTGGCCTCTTCACCGCAAAAAAATAAGGAAAGTTGTCATCAGGAAAGAAAAGAGAGCCCGGAAGAAAGAGGAAAGCTTTGAAAAAGCTCTTCAAATTGTGAACACTAGGACAAGAGTTGATGTTGCTTGGCAGGATGGAACGATAGGGTGTGGACTAGATTCTACAAGTTTAATTCCTATTGATACTCCTGGTGATCATGAATTTGTTTCAGAACAATATGTTGTAGAGAAGACCTCTGATGATGGTGAGGATAATTGTGAAACCAGCCGAGTTGGGGTGGTGAGGAGTGTTGATGCCAAAGAGCGGACAGCTTGTGTGAGGTGGATAAAACCAGCTGCCAAGGTTGATGATCCCCGAGAATTCGACAACGAGGAAATTGTAAGTGTCTATGAGCTAGAGGGCCATCCAGATTATGAGTATTGCTATGGGGACGTGGTTGTTAGACTATCACCCGTGTCTGTCTGTTTAGATGCTTCTGTTGGAGAGTCTACTGAGAAATCGAAGCAGGAAAACGAAGAAAATGGACATAAAAATGAAGCAGCAACCCAAACAGAAACAGCATCTTCTGGCGAAACTGATGTGGAGTTCTCAGACCTCTCTTGGGTTGGAAATATAACTGGCCTTAAGAATGGTGATATTGAAGTTACATGGGCTGATGGGATGGTATCAACGGTTGGACCCCAAGCAATCTATGTGGTTGGTAGAGATGATGATGCTGAATCACTTGCAGCAGGGAGTGATATAAGCGATGCTGCAACCTGGGAAACCGTTGATGATGATGAAATGGAAGTCCAAGAGGATTCCAGAGAGGTCGTTAATAGGGAAAATTCAAGCAATGTTGCAGAAGAGAATGGAGAGAAAGACTCTGGTAGGACCGCGGCACTTTCTGTCCCACTTGCAGCAATTCGATTTGTAACCAGACTTGCGTCTGGAATATTCTCCAGGGGACAGAAGAACTTGGATCCTGTTCACGTGCAGTCAAATGGTGAAATTGAATGTTCGTCACCAGTTAAAATATGCGAGTCCAGTTCTCAGAAATGTATTGCCATTGATGGTGACAATTTGGGTAGCCAGAGTTGTAAAAATGAGGAGTCTGTTATTCCAGAAAGTTCAGAAAATGTGGAAGCATCTGAGAGGTGCAGCTTGAAGAATAAAGAAGCTCCTGCTAGTTGTGACAATGATGCTTGTAGTTTGAAACATTTTGACATGGTTACAGATCCGTTAGACCATTACTATATTGGTGCAACTGGACAGAGTAACAACCGAAAATGGTATAAGAAGGTGCAACAAGATTGGGGCATACTACAAAATAACCTTCCTGAGGAAATCTATGTACGAGTTTATGAAGATAGAATGGATCTTGTGAGAGCAGTTATTATAGGGCCATTTGGGACTCCTTACCAAGATGGGCTGTTTTTCTTTGATTTTCACCTTCCGCCAGATTATCCTGATGTTCCACCGTCAGCATACTATCATTCGGGTGGTTGGCGTATTAACCCTAATTTGTATGAGGAAGGGAAGGTTTGCCTTAGCCTTCTAAACACATGGACAGGCAGAGGCAATGAAGTATGGGATCCAAAATCTTCTAGCATCCTTCAAGTTCTAGTTTCACTACAAGGGCTAGTACTCAACTCCAAGCCTTACTTCAATGAAGCTGGATATGATAAGCAGACTGGAACAGCTGAAGGAGAGAAGAATTCATTATCATACAATGAGAATACATTTTTACTGAACTGCAAGACCATGATGTATCTTATGCGGAAGCCACCCAAGGATTTTGAAGTGCTCATCAAAGAACATTTTAGGAGGCGTGGTCATTACATTCTTAAGGCTTGTGATGCATATATGAAGGGCTACTTGATTGGCTCGTTGACTAGAGATGCCTCTGTGAGTGACAATAGCAGTCCAAATTCAACCTCTGTTGGTTTCAAGTTGATGTTGGCCAAGATAGCGCCAAAGCTTTTCGTGTCACTTAGTGAAGTTGGGGCTGATTGCGATGAATTTAAGCATTTGAAAGAGTTGTAG
Protein sequence

>Msa0138210

MEVQQHEAHSENKEPAENANAEPDGVSCKKSNTMQIYRQDVVKNKNTGMVGIVTEVNGDSDSDSDSDSDSDSGVTDDEVEEGDVEEGDESNNGCRNSDRNDTSVHRKTAALQTNELRVLWMDESESTQNFSDVEVVDRGFLHSDFVASASDPTGQVGVVVDVNISVDLLAHDGSIIKDVSSKDLKRIRDFTAGDYVVLGSWLGKVDDVLDNVTVLFDDGSVCKVSKADPMDLKPISKNNILEDGHFPYYPGQRVRAKSSSIFKMARWLSGLWKASRLEGTVTNVTVGSVFVYWIASAGHGPYSSAAPAEEQSPKNLKLLSCFAHANWQLGDRCLLHSSALSSSVSINKNKSKLEHNDSVTIELDSNQTGSGCDSEDATVEESNGNKDTMDLDPVGALEGNDGNDRNNPSCESSSCGSSISVSKDPVREAWPLHRKKIRKVVIRKEKRARKKEESFEKALQIVNTRTRVDVAWQDGTIGCGLDSTSLIPIDTPGDHEFVSEQYVVEKTSDDGEDNCETSRVGVVRSVDAKERTACVRWIKPAAKVDDPREFDNEEIVSVYELEGHPDYEYCYGDVVVRLSPVSVCLDASVGESTEKSKQENEENGHKNEAATQTETASSGETDVEFSDLSWVGNITGLKNGDIEVTWADGMVSTVGPQAIYVVGRDDDAESLAAGSDISDAATWETVDDDEMEVQEDSREVVNRENSSNVAEENGEKDSGRTAALSVPLAAIRFVTRLASGIFSRGQKNLDPVHVQSNGEIECSSPVKICESSSQKCIAIDGDNLGSQSCKNEESVIPESSENVEASERCSLKNKEAPASCDNDACSLKHFDMVTDPLDHYYIGATGQSNNRKWYKKVQQDWGILQNNLPEEIYVRVYEDRMDLVRAVIIGPFGTPYQDGLFFFDFHLPPDYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQTGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKDFEVLIKEHFRRRGHYILKACDAYMKGYLIGSLTRDASVSDNSSPNSTSVGFKLMLAKIAPKLFVSLSEVGADCDEFKHLKEL*