Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625660 | AFK33750.1 | 71.429 | 168 | 12 | 3 | 44 | 183 | 1 | 160 | 3.04e-66 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625660 | sp|Q9LK31|Y3272_ARATH | 49.485 | 97 | 41 | 1 | 87 | 183 | 92 | 180 | 3.27e-27 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625660 | I3S0F8 | 71.429 | 168 | 12 | 3 | 44 | 183 | 1 | 160 | 1.45e-66 | 214 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043560 | Msa0625660 | 0.801932 | 7.130861e-49 | -8.615850e-47 |
| Msa0054820 | Msa0625660 | 0.806389 | 8.422280e-50 | -8.615850e-47 |
| Msa0061340 | Msa0625660 | 0.802503 | 5.439759e-49 | -8.615850e-47 |
| Msa0625660 | Msa0689760 | 0.802998 | 4.300173e-49 | -8.615850e-47 |
| Msa0625660 | Msa0757800 | 0.802766 | 4.800332e-49 | -8.615850e-47 |
| Msa0625660 | Msa0832090 | 0.807269 | 5.487970e-50 | -8.615850e-47 |
| Msa0625660 | Msa0986510 | 0.800546 | 1.370306e-48 | -8.615850e-47 |
| Msa0625660 | Msa1087980 | 0.809107 | 2.228011e-50 | -8.615850e-47 |
| Msa0625660 | Msa1137570 | 0.804009 | 2.653384e-49 | -8.615850e-47 |
| Msa0625660 | Msa1306850 | 0.801811 | 7.549156e-49 | -8.615850e-47 |
| Msa0625660 | Msa1418260 | 0.813415 | 2.589990e-51 | -8.615850e-47 |
| Msa0625660 | Msa1420250 | 0.802431 | 5.627674e-49 | -8.615850e-47 |
| Msa0152400 | Msa0625660 | 0.803237 | 3.837512e-49 | -8.615850e-47 |
| Msa0218350 | Msa0625660 | 0.804525 | 2.072021e-49 | -8.615850e-47 |
| Msa0320800 | Msa0625660 | 0.805433 | 1.337822e-49 | -8.615850e-47 |
| Msa0484780 | Msa0625660 | 0.800419 | 1.454410e-48 | -8.615850e-47 |
| Msa0512870 | Msa0625660 | 0.811508 | 6.758687e-51 | -8.615850e-47 |
| Msa0576680 | Msa0625660 | 0.806614 | 7.550575e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625660 | MtrunA17_Chr4g0002161 | 71.429 | 168 | 12 | 3 | 44 | 183 | 1 | 160 | 8.25e-68 | 215 |
| Msa0625660 | MtrunA17_Chr7g0230061 | 64.935 | 77 | 27 | 0 | 86 | 162 | 80 | 156 | 4.24e-30 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0625660 | AT1G51540.1 | 51.389 | 144 | 34 | 2 | 56 | 163 | 11 | 154 | 5.76e-40 | 143 |
| Msa0625660 | AT3G27220.1 | 49.485 | 97 | 41 | 1 | 87 | 183 | 92 | 180 | 3.33e-28 | 111 |
Find 49 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATCTGCGTCGGACTTCT+AGG | 0.209800 | 4_3:+4851635 | Msa0625660:CDS |
| GAAATGGCACATTCACATTT+AGG | 0.243377 | 4_3:+4853413 | Msa0625660:CDS |
| GAAATTGGAACGAGGGAAAT+AGG | 0.276239 | 4_3:-4851705 | None:intergenic |
| ACCTGCTCCTCAACTTGTTT+GGG | 0.304175 | 4_3:+4851813 | Msa0625660:CDS |
| CTATGCTTGCCAAACAAGTT+TGG | 0.308803 | 4_3:-4854259 | None:intergenic |
| AAAACTCGGTTCAGCCAAAT+TGG | 0.314857 | 4_3:+4851610 | Msa0625660:CDS |
| TACCTGCTCCTCAACTTGTT+TGG | 0.320322 | 4_3:+4851812 | Msa0625660:CDS |
| CATTATACTGTTGCAATCAA+TGG | 0.323180 | 4_3:+4853902 | Msa0625660:CDS |
| TGTGAATGTGCCATTTCTTT+TGG | 0.343344 | 4_3:-4853407 | None:intergenic |
| TCACCTGTTCCTAGACTTGA+TGG | 0.347002 | 4_3:+4851850 | Msa0625660:CDS |
| TAGTAGTCTCAGTAAGAATA+AGG | 0.347774 | 4_3:+4853961 | Msa0625660:CDS |
| GACGCAGATCACAACCAATT+TGG | 0.352455 | 4_3:-4851624 | None:intergenic |
| TGCAATCAATGGGGAGAAAA+TGG | 0.353281 | 4_3:+4853913 | Msa0625660:CDS |
| ACTCATCAATACTCAATATC+AGG | 0.355153 | 4_3:-4853871 | None:intergenic |
| ATTATACTGTTGCAATCAAT+GGG | 0.378299 | 4_3:+4853903 | Msa0625660:CDS |
| TCTCATTCCTACACAGTATC+AGG | 0.382743 | 4_3:-4850932 | None:intergenic |
| GTGAAACCTCCAAACTTGTT+TGG | 0.406851 | 4_3:+4854250 | Msa0625660:CDS |
| AGGCTGATGAGGGCGGGAAG+TGG | 0.424240 | 4_3:+4850830 | None:intergenic |
| CGATTTGTTTAGAAGATGTC+AGG | 0.427760 | 4_3:-4850886 | None:intergenic |
| CACTTGGAGATAAGAGTGTT+AGG | 0.432227 | 4_3:+4854221 | Msa0625660:CDS |
| TCCCAAACAAGTTGAGGAGC+AGG | 0.438279 | 4_3:-4851814 | None:intergenic |
| GAAGTGGTCGCTGGTGCATA+AGG | 0.443635 | 4_3:+4850846 | Msa0625660:CDS |
| TGAAGAAGCCCATAGAAAAT+CGG | 0.474601 | 4_3:-4851672 | None:intergenic |
| GAAGCATATACAACTGCATC+TGG | 0.475455 | 4_3:-4854124 | None:intergenic |
| TGCTTGCCAAACAAGTTTGG+AGG | 0.490243 | 4_3:-4854256 | None:intergenic |
| TGAGGGCGGGAAGTGGTCGC+TGG | 0.490569 | 4_3:+4850837 | Msa0625660:CDS |
| ATATTTAGCTTTGAAACACT+TGG | 0.501235 | 4_3:+4854205 | Msa0625660:CDS |
| GTTAGTTACATTATTAATGT+CGG | 0.505269 | 4_3:-4851920 | None:intergenic |
| TCGAATCACATCGTAATGAG+AGG | 0.518558 | 4_3:+4850906 | Msa0625660:CDS |
| GCACCATCAAGTCTAGGAAC+AGG | 0.519537 | 4_3:-4851853 | None:intergenic |
| GAATGACATGGTTCGTCCGT+CGG | 0.523631 | 4_3:+4851586 | Msa0625660:CDS |
| CACCTGAGGCTGATGAGGGC+GGG | 0.534836 | 4_3:+4850824 | None:intergenic |
| CATAGCTAAAATTATAGCCC+AGG | 0.546488 | 4_3:+4854153 | Msa0625660:CDS |
| GAACGAGGGAAATAGGAAGA+TGG | 0.564903 | 4_3:-4851698 | None:intergenic |
| TTCTTACTGAGACTACTAGC+TGG | 0.565210 | 4_3:-4853956 | None:intergenic |
| GGCACATTCACATTTAGGAA+TGG | 0.569145 | 4_3:+4853418 | Msa0625660:CDS |
| TTTGATGATGGAACTTGGGG+AGG | 0.574262 | 4_3:+4853371 | Msa0625660:CDS |
| GTTCGTCCGTCGGTAAAACT+CGG | 0.592046 | 4_3:+4851596 | Msa0625660:CDS |
| TCTTCTTCAGATTCTAACGA+CGG | 0.592599 | 4_3:+4851559 | Msa0625660:intron |
| GATATTGAGTATTGATGAGT+GGG | 0.593693 | 4_3:+4853874 | Msa0625660:CDS |
| CGAATCACATCGTAATGAGA+GGG | 0.598844 | 4_3:+4850907 | Msa0625660:CDS |
| AAATTGGTTGTGATCTGCGT+CGG | 0.599739 | 4_3:+4851626 | Msa0625660:CDS |
| ACACCTGAGGCTGATGAGGG+CGG | 0.601820 | 4_3:+4850823 | None:intergenic |
| ATAGCAGCACCATCAAGTCT+AGG | 0.602814 | 4_3:-4851859 | None:intergenic |
| TCTTCAGATTCTAACGACGG+TGG | 0.661283 | 4_3:+4851562 | Msa0625660:intron |
| GCATAAGGCATGATAATGAG+CGG | 0.674634 | 4_3:+4850861 | Msa0625660:CDS |
| TGATATTGAGTATTGATGAG+TGG | 0.682358 | 4_3:+4853873 | Msa0625660:CDS |
| AACGACGGTGGTGAATGACA+TGG | 0.711579 | 4_3:+4851574 | Msa0625660:CDS |
| TTATACTGTTGCAATCAATG+GGG | 0.785394 | 4_3:+4853904 | Msa0625660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAGTATAAAAAAACTA+TGG | + | chr4_3:4851407-4851426 | Msa0625660:intron | 10.0% |
| !!! | TAATAAATTAAGTTTAGAGT+TGG | - | chr4_3:4851331-4851350 | None:intergenic | 15.0% |
| !!! | GATATATATAATTTTGATGA+TGG | + | chr4_3:4853359-4853378 | Msa0625660:CDS | 15.0% |
| !!! | AATTTGAAGTTATTATTGTT+AGG | + | chr4_3:4854029-4854048 | Msa0625660:intron | 15.0% |
| !!! | CTTTTTAAGGTTAATAAGTA+GGG | - | chr4_3:4851284-4851303 | None:intergenic | 20.0% |
| !! | GTGAAACCAAAAAATAAAAA+GGG | + | chr4_3:4851304-4851323 | Msa0625660:intron | 20.0% |
| !! | TGAAACCAAAAAATAAAAAG+GGG | + | chr4_3:4851305-4851324 | Msa0625660:intron | 20.0% |
| !!! | TTCTTTTGTTCTTTTTCTTT+AGG | - | chr4_3:4851752-4851771 | None:intergenic | 20.0% |
| !! | GTTAGTTACATTATTAATGT+CGG | - | chr4_3:4851923-4851942 | None:intergenic | 20.0% |
| !! | ATAGTTAATTACAATTAGTG+TGG | + | chr4_3:4852114-4852133 | Msa0625660:intron | 20.0% |
| !! | TAGTTAATTACAATTAGTGT+GGG | + | chr4_3:4852115-4852134 | Msa0625660:intron | 20.0% |
| !!! | ATTTTCATAAATAGCTTAGT+TGG | + | chr4_3:4852489-4852508 | Msa0625660:intron | 20.0% |
| !!! | TTTTCATAAATAGCTTAGTT+GGG | + | chr4_3:4852490-4852509 | Msa0625660:intron | 20.0% |
| !! | CTATAGTTAATGAGAAAATA+TGG | + | chr4_3:4852548-4852567 | Msa0625660:intron | 20.0% |
| !!! | TTGTTTTCATTTAAGCTATA+AGG | + | chr4_3:4852576-4852595 | Msa0625660:intron | 20.0% |
| !! | TTATATACAACAAACACTTA+AGG | - | chr4_3:4852761-4852780 | None:intergenic | 20.0% |
| !!! | TTAAGTGTTTGTTGTATATA+AGG | + | chr4_3:4852760-4852779 | Msa0625660:intron | 20.0% |
| !!! | TAAGTGTTTGTTGTATATAA+GGG | + | chr4_3:4852761-4852780 | Msa0625660:intron | 20.0% |
| !! | GTGTTTAAAAGAACTTATAT+GGG | - | chr4_3:4853287-4853306 | None:intergenic | 20.0% |
| !!! | GTTATATTATTGTGTTTTTC+AGG | + | chr4_3:4853322-4853341 | Msa0625660:intron | 20.0% |
| !!! | ATGTTAATGTTTTCTATAAC+TGG | + | chr4_3:4853999-4854018 | Msa0625660:intron | 20.0% |
| ! | GGAAGACTAAAATAATTGTT+TGG | + | chr4_3:4850968-4850987 | Msa0625660:intron | 25.0% |
| ! | AATTGTGTGGAATGTTAAAA+TGG | + | chr4_3:4851188-4851207 | Msa0625660:intron | 25.0% |
| !!! | CCTTTTTAAGGTTAATAAGT+AGG | - | chr4_3:4851285-4851304 | None:intergenic | 25.0% |
| ! | CCTACTTATTAACCTTAAAA+AGG | + | chr4_3:4851282-4851301 | Msa0625660:intron | 25.0% |
| !!! | TTTTTGGTTTCACCTTTTTA+AGG | - | chr4_3:4851297-4851316 | None:intergenic | 25.0% |
| ! | GGTGAAACCAAAAAATAAAA+AGG | + | chr4_3:4851303-4851322 | Msa0625660:intron | 25.0% |
| !!! | AAATTTTGAAATTGGAACGA+GGG | - | chr4_3:4851715-4851734 | None:intergenic | 25.0% |
| !!! | GATTGTGGAAATTTTGAAAT+TGG | - | chr4_3:4851723-4851742 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTCAAGAGTTTAG+CGG | + | chr4_3:4851969-4851988 | Msa0625660:intron | 25.0% |
| !! | TCTAAGACATTTGATATGTT+GGG | - | chr4_3:4852052-4852071 | None:intergenic | 25.0% |
| !!! | TTCTAAGACATTTGATATGT+TGG | - | chr4_3:4852053-4852072 | None:intergenic | 25.0% |
| !! | CAGTTAAATTAGTTTCAAGT+TGG | - | chr4_3:4852178-4852197 | None:intergenic | 25.0% |
| !! | ATTTTAAATGTGGAAAAGTG+GGG | - | chr4_3:4852276-4852295 | None:intergenic | 25.0% |
| !! | CATTTTAAATGTGGAAAAGT+GGG | - | chr4_3:4852277-4852296 | None:intergenic | 25.0% |
| !! | ACATTTTAAATGTGGAAAAG+TGG | - | chr4_3:4852278-4852297 | None:intergenic | 25.0% |
| !!! | ACTTTTCCACATTTAAAATG+TGG | + | chr4_3:4852277-4852296 | Msa0625660:intron | 25.0% |
| !!! | CTTTTCCACATTTAAAATGT+GGG | + | chr4_3:4852278-4852297 | Msa0625660:intron | 25.0% |
| ! | AACTTGCAACTAATATAACT+AGG | + | chr4_3:4852346-4852365 | Msa0625660:intron | 25.0% |
| ! | TATCAACTGAGTTGTATTTA+TGG | + | chr4_3:4852374-4852393 | Msa0625660:intron | 25.0% |
| ! | ATCAACTGAGTTGTATTTAT+GGG | + | chr4_3:4852375-4852394 | Msa0625660:intron | 25.0% |
| ! | TTTGATGTATAGCTTAGTTA+AGG | + | chr4_3:4852447-4852466 | Msa0625660:intron | 25.0% |
| ! | AGTTAAGGACTTATTGAATA+AGG | + | chr4_3:4852462-4852481 | Msa0625660:intron | 25.0% |
| ! | GTTAAGGACTTATTGAATAA+GGG | + | chr4_3:4852463-4852482 | Msa0625660:intron | 25.0% |
| ! | TTGGGTGTTTATTATATAAG+TGG | + | chr4_3:4852508-4852527 | Msa0625660:intron | 25.0% |
| ! | AATTAGCTGGAAACAATATA+TGG | + | chr4_3:4852632-4852651 | Msa0625660:intron | 25.0% |
| ! | ATAACATGTATTAGAAATCG+TGG | + | chr4_3:4852793-4852812 | Msa0625660:intron | 25.0% |
| !! | AAATAAAAGCTTGTTCGAAA+CGG | - | chr4_3:4852986-4853005 | None:intergenic | 25.0% |
| ! | CGTGTTTAAAAGAACTTATA+TGG | - | chr4_3:4853288-4853307 | None:intergenic | 25.0% |
| !!! | ATAATTTTGATGATGGAACT+TGG | + | chr4_3:4853366-4853385 | Msa0625660:CDS | 25.0% |
| !!! | TAATTTTGATGATGGAACTT+GGG | + | chr4_3:4853367-4853386 | Msa0625660:CDS | 25.0% |
| !!! | TTCTTCCAAGTTGATAAATT+AGG | + | chr4_3:4853738-4853757 | Msa0625660:intron | 25.0% |
| !!! | TCTTCCAAGTTGATAAATTA+GGG | + | chr4_3:4853739-4853758 | Msa0625660:intron | 25.0% |
| ! | ACAAAATTGGAAAAAGGAAT+AGG | - | chr4_3:4853787-4853806 | None:intergenic | 25.0% |
| ! | AGCTTTACAAAATTGGAAAA+AGG | - | chr4_3:4853793-4853812 | None:intergenic | 25.0% |
| ! | ATTATACTGTTGCAATCAAT+GGG | + | chr4_3:4853903-4853922 | Msa0625660:CDS | 25.0% |
| ! | TAATTAATAAAGGTAGCTAC+TGG | - | chr4_3:4854103-4854122 | None:intergenic | 25.0% |
| !!! | ATATTTAGCTTTGAAACACT+TGG | + | chr4_3:4854205-4854224 | Msa0625660:CDS | 25.0% |
| !! | ACTTAACTTTGGAGTTCTTA+TGG | - | chr4_3:4851042-4851061 | None:intergenic | 30.0% |
| ! | TGCTTGACTTTGAACAATTT+TGG | + | chr4_3:4851063-4851082 | Msa0625660:intron | 30.0% |
| ! | GCTTGACTTTGAACAATTTT+GGG | + | chr4_3:4851064-4851083 | Msa0625660:intron | 30.0% |
| !!! | ACTTTGAACAATTTTGGGAT+GGG | + | chr4_3:4851069-4851088 | Msa0625660:intron | 30.0% |
| ! | CGACAATGTTTAAAATTGTG+TGG | + | chr4_3:4851175-4851194 | Msa0625660:intron | 30.0% |
| TAAGGTTAATAAGTAGGGTA+GGG | - | chr4_3:4851279-4851298 | None:intergenic | 30.0% | |
| TTAAGGTTAATAAGTAGGGT+AGG | - | chr4_3:4851280-4851299 | None:intergenic | 30.0% | |
| !!! | GAAATTTTGAAATTGGAACG+AGG | - | chr4_3:4851716-4851735 | None:intergenic | 30.0% |
| ! | TTCTTTAGGAACAATGATTG+TGG | - | chr4_3:4851738-4851757 | None:intergenic | 30.0% |
| !! | AATCTTTTCTTCGTTTTTGC+TGG | + | chr4_3:4851892-4851911 | Msa0625660:CDS | 30.0% |
| ACATACTAATTGATCAGAAG+TGG | + | chr4_3:4852002-4852021 | Msa0625660:intron | 30.0% | |
| CATACTAATTGATCAGAAGT+GGG | + | chr4_3:4852003-4852022 | Msa0625660:intron | 30.0% | |
| ATACTAATTGATCAGAAGTG+GGG | + | chr4_3:4852004-4852023 | Msa0625660:intron | 30.0% | |
| AGACATTGCATAATATATGC+AGG | + | chr4_3:4852225-4852244 | Msa0625660:intron | 30.0% | |
| GACATTGCATAATATATGCA+GGG | + | chr4_3:4852226-4852245 | Msa0625660:intron | 30.0% | |
| ACATTGCATAATATATGCAG+GGG | + | chr4_3:4852227-4852246 | Msa0625660:intron | 30.0% | |
| AAAACAATCCTTCAAAACGT+TGG | - | chr4_3:4852430-4852449 | None:intergenic | 30.0% | |
| TAACAGAAGCTATTGTTGTA+TGG | + | chr4_3:4852658-4852677 | Msa0625660:intron | 30.0% | |
| TGCTTATGAACAACTTATCT+AGG | - | chr4_3:4852725-4852744 | None:intergenic | 30.0% | |
| ATGTATTAGAAATCGTGGTT+GGG | + | chr4_3:4852798-4852817 | Msa0625660:intron | 30.0% | |
| ! | TTCTTTTAAACACGTCTTAG+TGG | + | chr4_3:4853294-4853313 | Msa0625660:intron | 30.0% |
| !!! | AATTTTGATGATGGAACTTG+GGG | + | chr4_3:4853368-4853387 | Msa0625660:CDS | 30.0% |
| ! | TTTTGACATGCCAAAAGAAA+TGG | + | chr4_3:4853397-4853416 | Msa0625660:CDS | 30.0% |
| TCGTAGTGAACTAGAAAAAA+GGG | - | chr4_3:4853646-4853665 | None:intergenic | 30.0% | |
| TTCGTAGTGAACTAGAAAAA+AGG | - | chr4_3:4853647-4853666 | None:intergenic | 30.0% | |
| ATCAACTTGGAAGAAACTAT+GGG | - | chr4_3:4853733-4853752 | None:intergenic | 30.0% | |
| TATCAACTTGGAAGAAACTA+TGG | - | chr4_3:4853734-4853753 | None:intergenic | 30.0% | |
| !! | GGTATCTAGCTTTACAAAAT+TGG | - | chr4_3:4853800-4853819 | None:intergenic | 30.0% |
| GATCTTACACAGTTAAAAGT+GGG | - | chr4_3:4853821-4853840 | None:intergenic | 30.0% | |
| ACTCATCAATACTCAATATC+AGG | - | chr4_3:4853874-4853893 | None:intergenic | 30.0% | |
| !! | TGATATTGAGTATTGATGAG+TGG | + | chr4_3:4853873-4853892 | Msa0625660:CDS | 30.0% |
| !! | GATATTGAGTATTGATGAGT+GGG | + | chr4_3:4853874-4853893 | Msa0625660:CDS | 30.0% |
| CATTATACTGTTGCAATCAA+TGG | + | chr4_3:4853902-4853921 | Msa0625660:CDS | 30.0% | |
| TTATACTGTTGCAATCAATG+GGG | + | chr4_3:4853904-4853923 | Msa0625660:CDS | 30.0% | |
| TAGTAGTCTCAGTAAGAATA+AGG | + | chr4_3:4853961-4853980 | Msa0625660:CDS | 30.0% | |
| TGCATCTGGCTAATTAATAA+AGG | - | chr4_3:4854113-4854132 | None:intergenic | 30.0% | |
| !!! | GCTATAATTTTAGCTATGCA+TGG | - | chr4_3:4854151-4854170 | None:intergenic | 30.0% |
| CTTGAAAAACATCAGTGTTA+GGG | + | chr4_3:4854180-4854199 | Msa0625660:CDS | 30.0% | |
| ! | CGATTTGTTTAGAAGATGTC+AGG | - | chr4_3:4850889-4850908 | None:intergenic | 35.0% |
| TGTGTAGGAATGAGAATACA+TGG | + | chr4_3:4850940-4850959 | Msa0625660:intron | 35.0% | |
| GAATGAGAATACATGGTTGA+TGG | + | chr4_3:4850947-4850966 | Msa0625660:intron | 35.0% | |
| GAGTTACTGAAAAGAAGATG+TGG | - | chr4_3:4851016-4851035 | None:intergenic | 35.0% | |
| AAGTCAAGCACACTTAACTT+TGG | - | chr4_3:4851053-4851072 | None:intergenic | 35.0% | |
| !! | GACTTTGAACAATTTTGGGA+TGG | + | chr4_3:4851068-4851087 | Msa0625660:intron | 35.0% |
| !!! | GTTGGCCCCTTTTTATTTTT+TGG | - | chr4_3:4851313-4851332 | None:intergenic | 35.0% |
| TCTTCTTCAGATTCTAACGA+CGG | + | chr4_3:4851559-4851578 | Msa0625660:intron | 35.0% | |
| !!! | ACTCATTGCCGATTTTCTAT+GGG | + | chr4_3:4851664-4851683 | Msa0625660:CDS | 35.0% |
| TGAAGAAGCCCATAGAAAAT+CGG | - | chr4_3:4851675-4851694 | None:intergenic | 35.0% | |
| ! | ATCTTTTCCCAAACAAGTTG+AGG | - | chr4_3:4851823-4851842 | None:intergenic | 35.0% |
| TACTAATTGATCAGAAGTGG+GGG | + | chr4_3:4852005-4852024 | Msa0625660:intron | 35.0% | |
| ACTCGTGAGTTTAACTCAAT+TGG | + | chr4_3:4852199-4852218 | Msa0625660:intron | 35.0% | |
| !!! | TTTTTTGTCAAGTAGCCTAG+TGG | - | chr4_3:4852312-4852331 | None:intergenic | 35.0% |
| !!! | TTTTTGAAGCTATTGTCGAG+AGG | + | chr4_3:4852602-4852621 | Msa0625660:intron | 35.0% |
| GAGAGGATATTGAAATTAGC+TGG | + | chr4_3:4852619-4852638 | Msa0625660:intron | 35.0% | |
| CAAACACTTAAGGCTACATT+TGG | - | chr4_3:4852751-4852770 | None:intergenic | 35.0% | |
| CATGTATTAGAAATCGTGGT+TGG | + | chr4_3:4852797-4852816 | Msa0625660:intron | 35.0% | |
| TGAACAAGTGTTTGTAAGTG+GGG | - | chr4_3:4852867-4852886 | None:intergenic | 35.0% | |
| CTGAACAAGTGTTTGTAAGT+GGG | - | chr4_3:4852868-4852887 | None:intergenic | 35.0% | |
| TGTTTCTTACAAGCGTAGTT+AGG | + | chr4_3:4852914-4852933 | Msa0625660:intron | 35.0% | |
| AGTTGCTTCTAACATTGAAG+AGG | + | chr4_3:4853130-4853149 | Msa0625660:intron | 35.0% | |
| !!! | TGTGAATGTGCCATTTCTTT+TGG | - | chr4_3:4853410-4853429 | None:intergenic | 35.0% |
| GAAATGGCACATTCACATTT+AGG | + | chr4_3:4853413-4853432 | Msa0625660:CDS | 35.0% | |
| CGTAGTGAACTAGAAAAAAG+GGG | - | chr4_3:4853645-4853664 | None:intergenic | 35.0% | |
| !!! | TTTTCTAGTTCACTACGAAG+AGG | + | chr4_3:4853648-4853667 | Msa0625660:intron | 35.0% |
| GTGACCCTAATTTATCAACT+TGG | - | chr4_3:4853746-4853765 | None:intergenic | 35.0% | |
| TAAATTAGGGTCACTAGTAG+AGG | + | chr4_3:4853752-4853771 | Msa0625660:intron | 35.0% | |
| AAATTAGGGTCACTAGTAGA+GGG | + | chr4_3:4853753-4853772 | Msa0625660:intron | 35.0% | |
| GGATCTTACACAGTTAAAAG+TGG | - | chr4_3:4853822-4853841 | None:intergenic | 35.0% | |
| AATATCAGGATGAGCTTATG+TGG | - | chr4_3:4853860-4853879 | None:intergenic | 35.0% | |
| CATAGCTAAAATTATAGCCC+AGG | + | chr4_3:4854153-4854172 | Msa0625660:CDS | 35.0% | |
| !!! | GATGTTTTTCAAGCTAACCT+GGG | - | chr4_3:4854173-4854192 | None:intergenic | 35.0% |
| !!! | TGATGTTTTTCAAGCTAACC+TGG | - | chr4_3:4854174-4854193 | None:intergenic | 35.0% |
| GCTTGAAAAACATCAGTGTT+AGG | + | chr4_3:4854179-4854198 | Msa0625660:CDS | 35.0% | |
| ! | GCATAAGGCATGATAATGAG+CGG | + | chr4_3:4850861-4850880 | Msa0625660:CDS | 40.0% |
| TCGAATCACATCGTAATGAG+AGG | + | chr4_3:4850906-4850925 | Msa0625660:CDS | 40.0% | |
| CGAATCACATCGTAATGAGA+GGG | + | chr4_3:4850907-4850926 | Msa0625660:CDS | 40.0% | |
| TCTCATTCCTACACAGTATC+AGG | - | chr4_3:4850935-4850954 | None:intergenic | 40.0% | |
| AAAACTCGGTTCAGCCAAAT+TGG | + | chr4_3:4851610-4851629 | Msa0625660:CDS | 40.0% | |
| AAATTGGTTGTGATCTGCGT+CGG | + | chr4_3:4851626-4851645 | Msa0625660:CDS | 40.0% | |
| !!! | CACTCATTGCCGATTTTCTA+TGG | + | chr4_3:4851663-4851682 | Msa0625660:CDS | 40.0% |
| GAAATTGGAACGAGGGAAAT+AGG | - | chr4_3:4851708-4851727 | None:intergenic | 40.0% | |
| TGCATAATATATGCAGGGGT+CGG | + | chr4_3:4852231-4852250 | Msa0625660:intron | 40.0% | |
| ! | GAGCTCCCACATTTTAAATG+TGG | - | chr4_3:4852286-4852305 | None:intergenic | 40.0% |
| ! | CATTTAAAATGTGGGAGCTC+CGG | + | chr4_3:4852286-4852305 | Msa0625660:intron | 40.0% |
| TACTCTCTTAAACACTCGAC+AGG | - | chr4_3:4852696-4852715 | None:intergenic | 40.0% | |
| GAACAAGTGTTTGTAAGTGG+GGG | - | chr4_3:4852866-4852885 | None:intergenic | 40.0% | |
| CCTGAACAAGTGTTTGTAAG+TGG | - | chr4_3:4852869-4852888 | None:intergenic | 40.0% | |
| CCACTTACAAACACTTGTTC+AGG | + | chr4_3:4852866-4852885 | Msa0625660:intron | 40.0% | |
| AGGCTATCTCTCAACAAATG+TGG | + | chr4_3:4852886-4852905 | Msa0625660:intron | 40.0% | |
| GGCTATCTCTCAACAAATGT+GGG | + | chr4_3:4852887-4852906 | Msa0625660:intron | 40.0% | |
| CTTACAAGCGTAGTTAGGAA+TGG | + | chr4_3:4852919-4852938 | Msa0625660:intron | 40.0% | |
| AGGAAACAATAGCAAGCTCT+GGG | + | chr4_3:4853150-4853169 | Msa0625660:intron | 40.0% | |
| GGCACATTCACATTTAGGAA+TGG | + | chr4_3:4853418-4853437 | Msa0625660:CDS | 40.0% | |
| AGGGGAATCGAGTAAGAATA+AGG | - | chr4_3:4853627-4853646 | None:intergenic | 40.0% | |
| TAGTTCACTACGAAGAGGAA+GGG | + | chr4_3:4853653-4853672 | Msa0625660:intron | 40.0% | |
| GTGTCTGGCAATTGTGTTTA+AGG | + | chr4_3:4853707-4853726 | Msa0625660:intron | 40.0% | |
| AATTAGGGTCACTAGTAGAG+GGG | + | chr4_3:4853754-4853773 | Msa0625660:intron | 40.0% | |
| TGCAATCAATGGGGAGAAAA+TGG | + | chr4_3:4853913-4853932 | Msa0625660:CDS | 40.0% | |
| TTCTTACTGAGACTACTAGC+TGG | - | chr4_3:4853959-4853978 | None:intergenic | 40.0% | |
| TCAGGATTTGGGAAGATCAA+TGG | - | chr4_3:4854058-4854077 | None:intergenic | 40.0% | |
| TGGTCAAAAGGTCAGGATTT+GGG | - | chr4_3:4854069-4854088 | None:intergenic | 40.0% | |
| ATGGTCAAAAGGTCAGGATT+TGG | - | chr4_3:4854070-4854089 | None:intergenic | 40.0% | |
| GAAGCATATACAACTGCATC+TGG | - | chr4_3:4854127-4854146 | None:intergenic | 40.0% | |
| !! | CACTTGGAGATAAGAGTGTT+AGG | + | chr4_3:4854221-4854240 | Msa0625660:CDS | 40.0% |
| ! | GTGAAACCTCCAAACTTGTT+TGG | + | chr4_3:4854250-4854269 | Msa0625660:CDS | 40.0% |
| CTATGCTTGCCAAACAAGTT+TGG | - | chr4_3:4854262-4854281 | None:intergenic | 40.0% | |
| ! | TATCGAAAAGCGTGTGAGTG+AGG | + | chr4_3:4851109-4851128 | Msa0625660:intron | 45.0% |
| CATGCTGAAAAGACTCGTGT+TGG | + | chr4_3:4851138-4851157 | Msa0625660:intron | 45.0% | |
| !! | AAGACTCGTGTTGGTTTGTG+AGG | + | chr4_3:4851147-4851166 | Msa0625660:intron | 45.0% |
| TCTTCAGATTCTAACGACGG+TGG | + | chr4_3:4851562-4851581 | Msa0625660:intron | 45.0% | |
| GACGCAGATCACAACCAATT+TGG | - | chr4_3:4851627-4851646 | None:intergenic | 45.0% | |
| GAACGAGGGAAATAGGAAGA+TGG | - | chr4_3:4851701-4851720 | None:intergenic | 45.0% | |
| ! | TACCTGCTCCTCAACTTGTT+TGG | + | chr4_3:4851812-4851831 | Msa0625660:CDS | 45.0% |
| ! | ACCTGCTCCTCAACTTGTTT+GGG | + | chr4_3:4851813-4851832 | Msa0625660:CDS | 45.0% |
| TCACCTGTTCCTAGACTTGA+TGG | + | chr4_3:4851850-4851869 | Msa0625660:CDS | 45.0% | |
| ATAGCAGCACCATCAAGTCT+AGG | - | chr4_3:4851862-4851881 | None:intergenic | 45.0% | |
| CATTTGATATGTTGGGACGC+AGG | - | chr4_3:4852045-4852064 | None:intergenic | 45.0% | |
| GCATAATATATGCAGGGGTC+GGG | + | chr4_3:4852232-4852251 | Msa0625660:intron | 45.0% | |
| ! | TGTGGAAAAGTGGGGTGTTT+GGG | - | chr4_3:4852268-4852287 | None:intergenic | 45.0% |
| ! | ATGTGGAAAAGTGGGGTGTT+TGG | - | chr4_3:4852269-4852288 | None:intergenic | 45.0% |
| ! | TCCACTCACCAACGTTTTGA+AGG | + | chr4_3:4852419-4852438 | Msa0625660:intron | 45.0% |
| ! | TCCTTCAAAACGTTGGTGAG+TGG | - | chr4_3:4852423-4852442 | None:intergenic | 45.0% |
| !! | ACCTCACAAGTCGGTTTTGT+GGG | - | chr4_3:4852835-4852854 | None:intergenic | 45.0% |
| GAGGAAACAATAGCAAGCTC+TGG | + | chr4_3:4853149-4853168 | Msa0625660:intron | 45.0% | |
| !! | TTTGATGATGGAACTTGGGG+AGG | + | chr4_3:4853371-4853390 | Msa0625660:CDS | 45.0% |
| CATTTAGGAATGGCGACAGA+TGG | + | chr4_3:4853428-4853447 | Msa0625660:intron | 45.0% | |
| CTAGTTCACTACGAAGAGGA+AGG | + | chr4_3:4853652-4853671 | Msa0625660:intron | 45.0% | |
| CCAGACACAAAATGCTACTC+TGG | - | chr4_3:4853695-4853714 | None:intergenic | 45.0% | |
| ! | CCAGAGTAGCATTTTGTGTC+TGG | + | chr4_3:4853692-4853711 | Msa0625660:intron | 45.0% |
| AGGATGAGCTTATGTGGATG+GGG | - | chr4_3:4853854-4853873 | None:intergenic | 45.0% | |
| CAGGATGAGCTTATGTGGAT+GGG | - | chr4_3:4853855-4853874 | None:intergenic | 45.0% | |
| TCAGGATGAGCTTATGTGGA+TGG | - | chr4_3:4853856-4853875 | None:intergenic | 45.0% | |
| TAGGCAATGGTCAAAAGGTC+AGG | - | chr4_3:4854076-4854095 | None:intergenic | 45.0% | |
| GCGTATAGGCAATGGTCAAA+AGG | - | chr4_3:4854081-4854100 | None:intergenic | 45.0% | |
| AAAGGTAGCTACTGGCGTAT+AGG | - | chr4_3:4854095-4854114 | None:intergenic | 45.0% | |
| TGCTTGCCAAACAAGTTTGG+AGG | - | chr4_3:4854259-4854278 | None:intergenic | 45.0% | |
| GAGGGATCCTGATACTGTGT+AGG | + | chr4_3:4850925-4850944 | Msa0625660:intron | 50.0% | |
| AACGACGGTGGTGAATGACA+TGG | + | chr4_3:4851574-4851593 | Msa0625660:CDS | 50.0% | |
| GAATGACATGGTTCGTCCGT+CGG | + | chr4_3:4851586-4851605 | Msa0625660:CDS | 50.0% | |
| GTTCGTCCGTCGGTAAAACT+CGG | + | chr4_3:4851596-4851615 | Msa0625660:CDS | 50.0% | |
| ! | GCTGAACCGAGTTTTACCGA+CGG | - | chr4_3:4851605-4851624 | None:intergenic | 50.0% |
| ! | TCCCAAACAAGTTGAGGAGC+AGG | - | chr4_3:4851817-4851836 | None:intergenic | 50.0% |
| GCACCATCAAGTCTAGGAAC+AGG | - | chr4_3:4851856-4851875 | None:intergenic | 50.0% | |
| ! | TGGAAAAGTGGGGTGTTTGG+GGG | - | chr4_3:4852266-4852285 | None:intergenic | 50.0% |
| ! | GTGGAAAAGTGGGGTGTTTG+GGG | - | chr4_3:4852267-4852286 | None:intergenic | 50.0% |
| TTGTCAAGTAGCCTAGTGGC+CGG | - | chr4_3:4852308-4852327 | None:intergenic | 50.0% | |
| !! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr4_3:4852824-4852843 | None:intergenic | 50.0% |
| !! | CCTCACAAGTCGGTTTTGTG+GGG | - | chr4_3:4852834-4852853 | None:intergenic | 50.0% |
| !! | CACCTCACAAGTCGGTTTTG+TGG | - | chr4_3:4852836-4852855 | None:intergenic | 50.0% |
| !! | CAAAACCGACTTGTGAGGTG+AGG | + | chr4_3:4852836-4852855 | Msa0625660:intron | 50.0% |
| GTAGTCCTCACCTCACAAGT+CGG | - | chr4_3:4852844-4852863 | None:intergenic | 50.0% | |
| GGATGAGCTTATGTGGATGG+GGG | - | chr4_3:4853853-4853872 | None:intergenic | 50.0% | |
| AGCTACTGGCGTATAGGCAA+TGG | - | chr4_3:4854089-4854108 | None:intergenic | 50.0% | |
| GAAGTGGTCGCTGGTGCATA+AGG | + | chr4_3:4850846-4850865 | Msa0625660:CDS | 55.0% | |
| GTGATCTGCGTCGGACTTCT+AGG | + | chr4_3:4851635-4851654 | Msa0625660:CDS | 55.0% | |
| GATCAGAAGTGGGGGTTTGC+AGG | + | chr4_3:4852013-4852032 | Msa0625660:intron | 55.0% | |
| ! | GGAAAAGTGGGGTGTTTGGG+GGG | - | chr4_3:4852265-4852284 | None:intergenic | 55.0% |
| !! | CCCCACAAAACCGACTTGTG+AGG | + | chr4_3:4852831-4852850 | Msa0625660:intron | 55.0% |
| ATGTGGATGGGGGATCAGCA+AGG | - | chr4_3:4853843-4853862 | None:intergenic | 55.0% | |
| ATGTGGGAGCTCCGGCCACT+AGG | + | chr4_3:4852294-4852313 | Msa0625660:intron | 65.0% | |
| TGAGGGCGGGAAGTGGTCGC+TGG | + | chr4_3:4850837-4850856 | Msa0625660:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 4850836 | 4854285 | 4850836 | ID=Msa0625660;Name=Msa0625660 |
| chr4_3 | mRNA | 4850836 | 4854285 | 4850836 | ID=Msa0625660-mRNA-1;Parent=Msa0625660;Name=Msa0625660-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0.2|0|0.5|1|1|6|0|254 |
| chr4_3 | exon | 4850836 | 4850940 | 4850836 | ID=Msa0625660-mRNA-1:exon:1340;Parent=Msa0625660-mRNA-1 |
| chr4_3 | exon | 4851569 | 4851716 | 4851569 | ID=Msa0625660-mRNA-1:exon:1341;Parent=Msa0625660-mRNA-1 |
| chr4_3 | exon | 4851797 | 4851933 | 4851797 | ID=Msa0625660-mRNA-1:exon:1342;Parent=Msa0625660-mRNA-1 |
| chr4_3 | exon | 4853344 | 4853439 | 4853344 | ID=Msa0625660-mRNA-1:exon:1343;Parent=Msa0625660-mRNA-1 |
| chr4_3 | exon | 4853866 | 4853982 | 4853866 | ID=Msa0625660-mRNA-1:exon:1344;Parent=Msa0625660-mRNA-1 |
| chr4_3 | exon | 4854124 | 4854285 | 4854124 | ID=Msa0625660-mRNA-1:exon:1345;Parent=Msa0625660-mRNA-1 |
| chr4_3 | CDS | 4850836 | 4850940 | 4850836 | ID=Msa0625660-mRNA-1:cds;Parent=Msa0625660-mRNA-1 |
| chr4_3 | CDS | 4851569 | 4851716 | 4851569 | ID=Msa0625660-mRNA-1:cds;Parent=Msa0625660-mRNA-1 |
| chr4_3 | CDS | 4851797 | 4851933 | 4851797 | ID=Msa0625660-mRNA-1:cds;Parent=Msa0625660-mRNA-1 |
| chr4_3 | CDS | 4853344 | 4853439 | 4853344 | ID=Msa0625660-mRNA-1:cds;Parent=Msa0625660-mRNA-1 |
| chr4_3 | CDS | 4853866 | 4853982 | 4853866 | ID=Msa0625660-mRNA-1:cds;Parent=Msa0625660-mRNA-1 |
| chr4_3 | CDS | 4854124 | 4854285 | 4854124 | ID=Msa0625660-mRNA-1:cds;Parent=Msa0625660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
