AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054820 MtrunA17_Chr1g0149971 91.886 949 32 7 1 915 1 938 0.0 1603
Msa0054820 MtrunA17_Chr3g0137011 43.891 884 321 13 1 855 1 738 0.0 597
Msa0054820 MtrunA17_Chr4g0001301 47.111 225 119 0 43 267 46 270 2.46e-66 238
Msa0054820 MtrunA17_Chr4g0001301 54.098 61 28 0 623 683 761 821 4.04e-17 86.7
Msa0054820 MtrunA17_Chr2g0290621 46.977 215 114 0 16 230 13 227 6.55e-55 207
Msa0054820 MtrunA17_Chr2g0290621 37.615 109 65 1 572 677 1312 1420 1.53e-14 78.6
Msa0054820 MtrunA17_Chr4g0076411 45.116 215 118 0 23 237 29 243 1.13e-51 197
Msa0054820 MtrunA17_Chr4g0076411 42.857 77 40 2 604 677 1353 1428 1.41e-14 78.6
Msa0054820 MtrunA17_Chr1g0164141 38.596 171 105 0 53 223 61 231 5.41e-34 141
Msa0054820 MtrunA17_Chr4g0013631 47.059 102 54 0 24 125 33 134 2.09e-24 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054820 AT4G31880.1 42.875 800 354 21 1 759 1 738 1.06e-163 501
Msa0054820 AT4G31880.2 42.516 795 363 19 1 759 1 737 7.58e-163 498
Msa0054820 AT1G80810.5 51.012 247 121 0 7 253 9 255 3.39e-76 263
Msa0054820 AT1G80810.3 51.012 247 121 0 7 253 9 255 9.64e-76 265
Msa0054820 AT1G15940.1 50.584 257 126 1 9 264 13 269 2.36e-75 266
Msa0054820 AT1G80810.4 52.217 203 97 0 51 253 1 203 2.45e-64 232
Msa0054820 AT1G80810.2 52.217 203 97 0 51 253 1 203 2.45e-64 232
Msa0054820 AT1G80810.1 52.217 203 97 0 51 253 1 203 2.77e-64 231
Msa0054820 AT5G47690.2 49.115 226 115 0 9 234 6 231 3.22e-54 206
Msa0054820 AT5G47690.2 45.455 77 38 2 604 677 1346 1421 1.43e-14 79.3
Msa0054820 AT5G47690.3 49.115 226 115 0 9 234 6 231 3.37e-54 206
Msa0054820 AT5G47690.3 45.455 77 38 2 604 677 1346 1421 1.44e-14 79.0
Msa0054820 AT5G47690.1 49.115 226 115 0 9 234 6 231 3.40e-54 206
Msa0054820 AT5G47690.1 45.455 77 38 2 604 677 1345 1420 1.49e-14 79.0
Msa0054820 AT5G47690.4 48.507 134 69 0 101 234 1 134 4.26e-28 123
Msa0054820 AT5G47690.4 45.455 77 38 2 604 677 1249 1324 1.69e-14 79.0
Msa0054820 AT1G77600.1 33.190 232 122 5 27 228 25 253 1.60e-27 121
Msa0054820 AT1G77600.2 33.190 232 122 5 27 228 25 253 1.77e-27 120
Msa0054820 AT1G77600.3 33.190 232 122 5 27 228 25 253 2.78e-27 120
Msa0054820 AT5G10950.1 31.034 319 175 7 607 881 20 337 2.48e-18 89.0
Msa0054820 AT4G32970.1 46.154 78 40 1 580 655 239 316 2.27e-12 71.2

Find 170 sgRNAs with CRISPR-Local

Find 638 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTTGGATTTCTTTGTTT+TGG 0.135848 1_2:+9509751 None:intergenic
ATTCACAGCTTGCAATAAAT+TGG 0.137673 1_2:+9514420 None:intergenic
TGAATGCGATGCCCTCATTT+TGG 0.211745 1_2:-9515499 Msa0054820:CDS
CTCCTCTGAATGTTCATCTT+TGG 0.212857 1_2:+9512930 None:intergenic
TGCCAACAATCTTGGACTTT+TGG 0.217412 1_2:+9509978 None:intergenic
GAATACCTTGGGTATTTCTT+TGG 0.248145 1_2:-9514401 Msa0054820:CDS
TGTTTCAACATCATCATCTT+TGG 0.263549 1_2:+9509736 None:intergenic
TTTGGAACCATCAGTCTTCT+TGG 0.272724 1_2:+9509769 None:intergenic
ATGGTACTTCTTTCCAGCTT+TGG 0.280257 1_2:+9513803 None:intergenic
CTATCCTCATTAAGAGAAAT+AGG 0.285148 1_2:+9513533 None:intergenic
GACTTGGCAGCAGCAGGCTT+TGG 0.294881 1_2:+9509713 None:intergenic
ACAACATTTGATTTCTTAGA+AGG 0.300643 1_2:+9513611 None:intergenic
CGGGTACTTCTTTCCAGCTT+TGG 0.307849 1_2:+9513674 None:intergenic
TCCAAAGGTAATAATTTATC+TGG 0.314186 1_2:-9513746 Msa0054820:intron
TCCAAAGGTAATAATTTATC+TGG 0.314186 1_2:-9513875 Msa0054820:intron
CGGTACCATCTTGATTCTTA+AGG 0.317971 1_2:+9513912 None:intergenic
TAAAGAAGGAATCTTCTAAA+AGG 0.321959 1_2:-9510124 Msa0054820:intron
ATCAGATTTGCCAACAATCT+TGG 0.333369 1_2:+9509970 None:intergenic
AGCATTTCTTGAAGACAATA+AGG 0.335459 1_2:-9515467 Msa0054820:intron
CTTCCGGCCTTTGAAGAACT+TGG 0.341166 1_2:+9509506 None:intergenic
TTCCTCTTCAGAGTTGTCTT+AGG 0.352079 1_2:+9512904 None:intergenic
TACATATCAGCAGAAGGTTC+AGG 0.356045 1_2:+9510720 None:intergenic
TTGCCAATTGCTCGAAAGTT+GGG 0.356161 1_2:-9514481 Msa0054820:CDS
GAGCTTGAAGAGGAGCTTCT+TGG 0.361460 1_2:-9518804 Msa0054820:CDS
TCCACTCTTGACCTCGCTTC+CGG 0.362848 1_2:+9509490 None:intergenic
TTCTTTACACTATCTAAGAT+TGG 0.363802 1_2:+9514658 None:intergenic
ATTTGATTTCTTAGAAGGTT+TGG 0.364123 1_2:+9513616 None:intergenic
AATCTTAGGTGTTCCTTGCT+TGG 0.371699 1_2:+9509661 None:intergenic
TAATGATGAGCGCGATGATA+TGG 0.372310 1_2:-9513723 Msa0054820:CDS
TAATGATGAGCGCGATGATA+TGG 0.372310 1_2:-9513852 Msa0054820:CDS
GCCTTGTTGCACAACTTTCA+AGG 0.376202 1_2:+9514449 None:intergenic
TGCTTAGACTTGGCAGCAGC+AGG 0.379630 1_2:+9509707 None:intergenic
GCAATTAATGCTTTCAATGA+TGG 0.382142 1_2:+9515863 None:intergenic
GTGATTGTTCAATCCTTGAT+AGG 0.382822 1_2:+9515915 None:intergenic
CATCGTGATTGCTCTCACTT+GGG 0.384010 1_2:+9513405 None:intergenic
TTTGTCATTCTCTGAAGTTC+CGG 0.387929 1_2:+9513496 None:intergenic
AATCACCTTGTGCTTCTTAG+TGG 0.388686 1_2:+9511602 None:intergenic
TAGCTTTCTTTCCTTTCCTC+CGG 0.389525 1_2:+9513654 None:intergenic
GGAGAGAAACCCACCACATC+TGG 0.391831 1_2:+9510833 None:intergenic
TTGGAGGAAGATGCAATCTT+AGG 0.392697 1_2:+9509647 None:intergenic
AGTACCATCTTGCTTCTTGA+TGG 0.393944 1_2:+9513784 None:intergenic
GGTACCATCTTGATTCTTAA+GGG 0.402411 1_2:+9513913 None:intergenic
TTCACAGCTTGCAATAAATT+GGG 0.404010 1_2:+9514421 None:intergenic
CACCTTGGCAGTACTCTTGG+TGG 0.430285 1_2:+9509616 None:intergenic
TTGCAAGCTGTGAATACCTT+GGG 0.433319 1_2:-9514412 Msa0054820:CDS
AACAATGGCTTCCATCGATA+AGG 0.435483 1_2:-9518826 Msa0054820:exon
TCCTCCGGCTTCAGCGAAGA+TGG 0.435935 1_2:+9513182 None:intergenic
CAGACTTTCTTGCTTAGACT+TGG 0.439941 1_2:+9509697 None:intergenic
TTTCACCTTGGCAGTACTCT+TGG 0.440852 1_2:+9509613 None:intergenic
TCATCGTGATTGCTCTCACT+TGG 0.445993 1_2:+9513404 None:intergenic
TTGGAAAACGAGTGAAAGTT+TGG 0.452118 1_2:-9512593 Msa0054820:CDS
CTGAAGAGGAAGCGCACTCC+AGG 0.456469 1_2:-9512892 Msa0054820:CDS
TTGAAACAGTTGCAAAAGTC+AGG 0.456577 1_2:-9515545 Msa0054820:CDS
TGTGAAAGGTAGCTCAGAAA+AGG 0.460714 1_2:-9513141 Msa0054820:CDS
TTCTGCTGAAGATGAGGATA+AGG 0.461842 1_2:-9513105 Msa0054820:intron
CCATCATCGTAAGGAGCATC+AGG 0.463270 1_2:+9515758 None:intergenic
TTTGCCAATTGCTCGAAAGT+TGG 0.463830 1_2:-9514482 Msa0054820:CDS
TGATGTCTCTTTGCATATTG+AGG 0.470487 1_2:+9514357 None:intergenic
CAAAGAGACATCAGATAACT+TGG 0.472652 1_2:-9514347 Msa0054820:CDS
AGTTCCTATTTCTCTTAATG+AGG 0.475927 1_2:-9513537 Msa0054820:CDS
CTCTGATGATTCATCAAAAG+AGG 0.477468 1_2:-9509552 Msa0054820:CDS
GAAGAGGAGCTTCTTGGTGC+TGG 0.481281 1_2:-9518798 Msa0054820:CDS
TCTTGTTATCTCACTGAAGC+AGG 0.484650 1_2:+9515790 None:intergenic
GGGCGCTCCATAGTGAAAAT+CGG 0.486737 1_2:+9519019 None:intergenic
ACCTGTGCCGACTCCTCCAC+GGG 0.491104 1_2:+9514168 None:intergenic
AAATTGAAAGCTGCCTATCA+AGG 0.491263 1_2:-9515928 Msa0054820:CDS
AGCTTTCTTTCCTTTCCTCC+GGG 0.491606 1_2:+9513655 None:intergenic
GGTGAAATTTAATTTGCTGC+AGG 0.492693 1_2:-9509597 Msa0054820:CDS
CCTGATGCTCCTTACGATGA+TGG 0.494019 1_2:-9515758 Msa0054820:CDS
ATTGCAAGCTGTGAATACCT+TGG 0.495747 1_2:-9514413 Msa0054820:CDS
TGGGCCATCTTCGCTGAAGC+CGG 0.496223 1_2:-9513186 Msa0054820:CDS
CCAGCAGCATTATCTTGTTG+TGG 0.496436 1_2:+9514013 None:intergenic
AGAAGAGCCCGTGGAGGAGT+CGG 0.498375 1_2:-9514175 Msa0054820:CDS
CGACAGTAAAGAACCAAAGC+TGG 0.500112 1_2:-9513687 Msa0054820:CDS
TGTACTTACATATTATCATC+TGG 0.502241 1_2:+9512567 None:intergenic
AACCAACAGCGTCAGATTCA+AGG 0.503072 1_2:+9513435 None:intergenic
ACCCAAAAGTCCAAGATTGT+TGG 0.505723 1_2:-9509980 Msa0054820:CDS
GAGGATCATTATAGTTTCCA+TGG 0.512597 1_2:+9514723 None:intergenic
GCCCGTGGAGGAGTCGGCAC+AGG 0.512947 1_2:-9514169 Msa0054820:intron
CACCTGTGCCGACTCCTCCA+CGG 0.513149 1_2:+9514167 None:intergenic
CAGGTCATGTGTGGTAATGC+TGG 0.515493 1_2:-9515526 Msa0054820:CDS
GCCATTGCTCATGACAGACT+TGG 0.517547 1_2:+9513979 None:intergenic
ACGCAGTTATGGCTGATGTT+GGG 0.519304 1_2:-9513205 Msa0054820:CDS
AAGTCCTCTTTGAGTACCAT+CGG 0.520932 1_2:+9515574 None:intergenic
AAGAAAGGGAAAACAAATGC+TGG 0.523409 1_2:-9510164 Msa0054820:CDS
ACATATCAGCAGAAGGTTCA+GGG 0.523521 1_2:+9510721 None:intergenic
TCTAGATCCTCCTTCTTCTG+TGG 0.525291 1_2:-9518766 Msa0054820:CDS
GCTGAAACATCTCCAAAATG+AGG 0.525907 1_2:+9515487 None:intergenic
TTCACATCAGAGCTACGAAT+GGG 0.526166 1_2:+9513239 None:intergenic
AGCAGATTATCCACAGAAGA+AGG 0.527883 1_2:+9518756 None:intergenic
AACTGTTGTACACGCAGTTA+TGG 0.529876 1_2:-9513216 Msa0054820:CDS
ATGTGCTACTAGTGGTCATA+TGG 0.534849 1_2:-9514311 Msa0054820:intron
AAGCAAGAAAGTCTGAAAAG+TGG 0.537618 1_2:-9509689 Msa0054820:CDS
CACGCAGTTATGGCTGATGT+TGG 0.537789 1_2:-9513206 Msa0054820:CDS
CCACAACAAGATAATGCTGC+TGG 0.541512 1_2:-9514013 Msa0054820:CDS
TGCCAATTGCTCGAAAGTTG+GGG 0.542777 1_2:-9514480 Msa0054820:CDS
TTCATTTGACCATCATCGTA+AGG 0.547264 1_2:+9515749 None:intergenic
CGACAGTGAAGATCCAAAGC+TGG 0.547329 1_2:-9513816 Msa0054820:CDS
GTGAAAGGTAGCTCAGAAAA+GGG 0.548617 1_2:-9513140 Msa0054820:CDS
CACCTTGTGCTTCTTAGTGG+AGG 0.548995 1_2:+9511605 None:intergenic
CTCCTAAGACAACTCTGAAG+AGG 0.549547 1_2:-9512906 Msa0054820:CDS
CTCTTCAAGCTCCTTATCGA+TGG 0.549642 1_2:+9518815 None:intergenic
GGCCTTGAATCTGACGCTGT+TGG 0.550492 1_2:-9513437 Msa0054820:CDS
AAGATTTCATCATCTAAAGC+AGG 0.558832 1_2:-9513461 Msa0054820:CDS
GGAAATATTGAATTTCAAAG+AGG 0.559321 1_2:-9510888 Msa0054820:CDS
TAAGACACCAAGTTCTTCAA+AGG 0.563438 1_2:-9509513 Msa0054820:CDS
TAGTGAAAATCGGATCTCGC+GGG 0.565397 1_2:+9519029 None:intergenic
ACACCAAGTTCTTCAAAGGC+CGG 0.566066 1_2:-9509509 Msa0054820:CDS
ATTATCTTGTTGTGGTGGTG+TGG 0.567813 1_2:+9514021 None:intergenic
AACAATTCCAAGAAGACTGA+TGG 0.567967 1_2:-9509776 Msa0054820:CDS
ATCAAATGTTGTCAGTGAGA+AGG 0.568468 1_2:-9513600 Msa0054820:CDS
CTTCACTTTCTTCAAGACAG+AGG 0.568574 1_2:+9514704 None:intergenic
AGCAATGGCATTGCACAGGC+TGG 0.569751 1_2:-9513965 Msa0054820:CDS
AAAATCTTCTGCTGAAGATG+AGG 0.574455 1_2:-9513111 Msa0054820:CDS
TTACGATGATGGTCAAATGA+AGG 0.575678 1_2:-9515747 Msa0054820:intron
CAGCAAATTAAATTTCACCT+TGG 0.579090 1_2:+9509601 None:intergenic
AGTACCATCAAGAAGCAAGA+TGG 0.582257 1_2:-9513788 Msa0054820:intron
CCCAAGTCTGTCATGAGCAA+TGG 0.584267 1_2:-9513980 Msa0054820:CDS
TTCTTCAAAGGCCGGAAGCG+AGG 0.584421 1_2:-9509501 Msa0054820:CDS
CCATTGCTCATGACAGACTT+GGG 0.584993 1_2:+9513980 None:intergenic
GAAAGAAGTACCCGGAGGAA+AGG 0.586795 1_2:-9513665 Msa0054820:CDS
GAGGATCGATCTGTGAAAAG+TGG 0.587517 1_2:-9509827 Msa0054820:CDS
CTGAAACATCTCCAAAATGA+GGG 0.589075 1_2:+9515488 None:intergenic
AAGTCCCTTAAGAATCAAGA+TGG 0.589469 1_2:-9513917 Msa0054820:intron
TCCTTGAAAGTTGTGCAACA+AGG 0.590316 1_2:-9514450 Msa0054820:CDS
TGATTGCTCTCACTTGGGGA+AGG 0.597535 1_2:+9513410 None:intergenic
AACCAAAGATGAACATTCAG+AGG 0.606229 1_2:-9512932 Msa0054820:CDS
GAAAACGAGTGAAAGTTTGG+TGG 0.606844 1_2:-9512590 Msa0054820:CDS
ATCGTGATTGCTCTCACTTG+GGG 0.607109 1_2:+9513406 None:intergenic
GCAGCATTATCTTGTTGTGG+TGG 0.611398 1_2:+9514016 None:intergenic
AAAAGTGGAAAATCCAAGCA+AGG 0.613072 1_2:-9509674 Msa0054820:CDS
GCCGGAAGCGAGGTCAAGAG+TGG 0.613992 1_2:-9509491 Msa0054820:CDS
CATGAGCAATGGCATTGCAC+AGG 0.614805 1_2:-9513969 Msa0054820:CDS
GCATTTAGCATAGATTCAGA+AGG 0.618101 1_2:+9515893 None:intergenic
AAAAGAGGTTGAAGTCGCAA+AGG 0.618191 1_2:-9509537 Msa0054820:CDS
GCCATCTTCGCTGAAGCCGG+AGG 0.620004 1_2:-9513183 Msa0054820:CDS
AAGAACGAAGGTTTCAACAA+TGG 0.620142 1_2:-9518841 Msa0054820:exon
TTTCACATCAGAGCTACGAA+TGG 0.622443 1_2:+9513238 None:intergenic
CATCGATAAGGAGCTTGAAG+AGG 0.623073 1_2:-9518814 Msa0054820:CDS
AAGATTGTTGGCAAATCTGA+TGG 0.623981 1_2:-9509968 Msa0054820:CDS
ACAAGATCTGCGAAGAACGA+AGG 0.625096 1_2:-9518853 Msa0054820:five_prime_UTR
CAAAGCTGGAAAGAAGTACC+CGG 0.625149 1_2:-9513673 Msa0054820:CDS
AGTAAAACCAGCAAGGCCAT+CGG 0.625363 1_2:-9513273 Msa0054820:CDS
TAGTGTAAAGAAAGACAATG+AGG 0.626231 1_2:-9514647 Msa0054820:intron
CTTATATGATGACGGTGACG+AGG 0.627894 1_2:-9510909 Msa0054820:CDS
CAAGCCGATGGTACTCAAAG+AGG 0.634997 1_2:-9515578 Msa0054820:CDS
TGCAAAAGTCAGGTCATGTG+TGG 0.635420 1_2:-9515535 Msa0054820:CDS
ATCCACCAAGAGTACTGCCA+AGG 0.638641 1_2:-9509618 Msa0054820:CDS
AAAGGTGTCTGAAGGAACAT+CGG 0.639404 1_2:-9513303 Msa0054820:intron
ATAGTGAAAATCGGATCTCG+CGG 0.641183 1_2:+9519028 None:intergenic
TGTTATCTCACTGAAGCAGG+AGG 0.643833 1_2:+9515793 None:intergenic
GAGGATCGTTCTGTGAAAAG+TGG 0.649043 1_2:-9509860 Msa0054820:CDS
ATTTCATCATCTAAAGCAGG+TGG 0.650486 1_2:-9513458 Msa0054820:CDS
GATCGTTCTGTGAAAAGCGG+TGG 0.650745 1_2:-9509890 Msa0054820:CDS
ATCATCCAAAGAAATACCCA+AGG 0.651603 1_2:+9514396 None:intergenic
ATTCTAAAGTAAAACCAGCA+AGG 0.653307 1_2:-9513280 Msa0054820:CDS
GAAAAGCGGTGGTAAATCTG+AGG 0.653841 1_2:-9509879 Msa0054820:CDS
GCCAATTGCTCGAAAGTTGG+GGG 0.654279 1_2:-9514479 Msa0054820:CDS
GGAACATACATATCAGCAGA+AGG 0.655262 1_2:+9510714 None:intergenic
CAAATCAGCAGAAGAGCCCG+TGG 0.658039 1_2:-9514184 Msa0054820:CDS
ATCAGCAGAAGAGCCCGTGG+AGG 0.658419 1_2:-9514181 Msa0054820:CDS
GAGGATCGTTCTGTGAAAAG+CGG 0.667811 1_2:-9509893 Msa0054820:CDS
AGATTATCCACAGAAGAAGG+AGG 0.674208 1_2:+9518759 None:intergenic
TACATGATAAGTCAAGCCGA+TGG 0.690536 1_2:-9515590 Msa0054820:CDS
AATGATGTATGTGCTACTAG+TGG 0.697284 1_2:-9514319 Msa0054820:CDS
GATCGTTCTGTGAAAAGTGG+TGG 0.707911 1_2:-9509857 Msa0054820:CDS
GAAAAGTGGTGGTAAGTCTG+AGG 0.717018 1_2:-9509846 Msa0054820:CDS
AGTTGATGCTGATCCAGATG+TGG 0.718308 1_2:-9510846 Msa0054820:intron
TTCCTCCACTAAGAAGCACA+AGG 0.719970 1_2:-9511607 Msa0054820:intron
AGCTGGAAAGAAGTACCCGG+AGG 0.747453 1_2:-9513670 Msa0054820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTATTTTATTATA+TGG + chr1_2:9509513-9509532 None:intergenic 0.0%
!! AATATAAAATATTAAATAAT+TGG - chr1_2:9510758-9510777 Msa0054820:intron 0.0%
!! ATATAAAATATTAAATAATT+GGG - chr1_2:9510759-9510778 Msa0054820:intron 0.0%
!!! TATTGATTAACAAATATAAT+TGG + chr1_2:9510928-9510947 None:intergenic 10.0%
!!! AATTATATTTGTTAATCAAT+AGG - chr1_2:9510927-9510946 Msa0054820:intron 10.0%
!!! TTCATTTTAATAAAAAAGAT+AGG - chr1_2:9511713-9511732 Msa0054820:intron 10.0%
!! TATTAATTAATTTCAAATCA+TGG - chr1_2:9512454-9512473 Msa0054820:intron 10.0%
!!! CTTATTATTTATTTTGTTTT+TGG - chr1_2:9514272-9514291 Msa0054820:intron 10.0%
!! CTTATAATTTATATTTACAA+GGG - chr1_2:9517317-9517336 Msa0054820:intron 10.0%
!! TGTATTATCAATAAAAATAA+AGG + chr1_2:9517378-9517397 None:intergenic 10.0%
!!! TATTTTTATTGATAATACAA+AGG - chr1_2:9517379-9517398 Msa0054820:intron 10.0%
!!! AAACATTTTTCAAATTAAAT+AGG - chr1_2:9517462-9517481 Msa0054820:intron 10.0%
!!! CTTAAAGTATTATTTTTAAA+TGG - chr1_2:9517499-9517518 Msa0054820:intron 10.0%
!!! TTGTTTTTATGATTATATTT+AGG - chr1_2:9518299-9518318 Msa0054820:intron 10.0%
!!! ATTATATGGTTTTTTCATTT+GGG + chr1_2:9509499-9509518 None:intergenic 15.0%
!!! TATTATATGGTTTTTTCATT+TGG + chr1_2:9509500-9509519 None:intergenic 15.0%
!!! TATCTATGTTTTTATATCAA+GGG + chr1_2:9509556-9509575 None:intergenic 15.0%
!!! TTATCTATGTTTTTATATCA+AGG + chr1_2:9509557-9509576 None:intergenic 15.0%
!!! AACATTGTTAAGTATTTTTT+AGG - chr1_2:9510001-9510020 Msa0054820:CDS 15.0%
!!! ACATTGTTAAGTATTTTTTA+GGG - chr1_2:9510002-9510021 Msa0054820:CDS 15.0%
!!! GGAAATTTGAAAATAATTTT+TGG - chr1_2:9510027-9510046 Msa0054820:CDS 15.0%
!!! GATGATTTTTTAAAGTTTAT+TGG - chr1_2:9510080-9510099 Msa0054820:intron 15.0%
!!! TTAAAGTTTATTGGATTTTT+AGG - chr1_2:9510089-9510108 Msa0054820:intron 15.0%
!! AAAATATTAAATAATTGGGT+TGG - chr1_2:9510763-9510782 Msa0054820:intron 15.0%
!! AAATATTAAATAATTGGGTT+GGG - chr1_2:9510764-9510783 Msa0054820:intron 15.0%
!! TTCCATATAAATAGATAATT+CGG + chr1_2:9510895-9510914 None:intergenic 15.0%
!! TTAAAATGAAATGAAATTAC+AGG + chr1_2:9511703-9511722 None:intergenic 15.0%
!! ATCTATGTAATATTAATATG+TGG + chr1_2:9511806-9511825 None:intergenic 15.0%
!!! TGTTAATTGTAAATTTGTTT+TGG - chr1_2:9512188-9512207 Msa0054820:intron 15.0%
!!! GTTAATTGTAAATTTGTTTT+GGG - chr1_2:9512189-9512208 Msa0054820:intron 15.0%
!!! TTAATTGTAAATTTGTTTTG+GGG - chr1_2:9512190-9512209 Msa0054820:intron 15.0%
!!! TATATCATTTTTTTTCTTCT+TGG - chr1_2:9512535-9512554 Msa0054820:intron 15.0%
!!! GATATCTTAATTTTAATACT+TGG + chr1_2:9513372-9513391 None:intergenic 15.0%
!! AAACGAAAAATAAAACATAT+AGG + chr1_2:9514365-9514384 None:intergenic 15.0%
!!! AATTTTAAATTAACAGAACA+GGG + chr1_2:9515646-9515665 None:intergenic 15.0%
!!! AAATTTTAAATTAACAGAAC+AGG + chr1_2:9515647-9515666 None:intergenic 15.0%
!! ACAGTTTATTTAATATAACA+TGG + chr1_2:9516621-9516640 None:intergenic 15.0%
!!! AAAGTTTTACTGAAATAAAT+TGG + chr1_2:9516959-9516978 None:intergenic 15.0%
!!! ATTTTTTTTCAATTTTTCCT+TGG - chr1_2:9517210-9517229 Msa0054820:intron 15.0%
!! GCTTATAATTTATATTTACA+AGG - chr1_2:9517316-9517335 Msa0054820:intron 15.0%
!!! TTTTTATATCAAGGGTTATT+GGG + chr1_2:9509548-9509567 None:intergenic 20.0%
!!! ATTTTTTCAGTTTTGAGATT+TGG - chr1_2:9510164-9510183 Msa0054820:CDS 20.0%
!! TTAAACTAAGAATTAACGAT+TGG - chr1_2:9510358-9510377 Msa0054820:intron 20.0%
!! CAAAAATAACTCATTTAAAC+AGG + chr1_2:9510810-9510829 None:intergenic 20.0%
!!! TTCAAGTACTGTAAAATTTT+AGG - chr1_2:9510838-9510857 Msa0054820:intron 20.0%
!! ATAAATAGATAATTCGGTTT+CGG + chr1_2:9510889-9510908 None:intergenic 20.0%
!! AACCGAATTATCTATTTATA+TGG - chr1_2:9510890-9510909 Msa0054820:CDS 20.0%
!! AAAACCAAGTTCATTAAAAT+AGG - chr1_2:9511645-9511664 Msa0054820:intron 20.0%
!! TTCACAAACAATTTAATGAA+TGG + chr1_2:9512065-9512084 None:intergenic 20.0%
!! AATTTACAATTAACAACTCA+GGG + chr1_2:9512183-9512202 None:intergenic 20.0%
!! AAATTTACAATTAACAACTC+AGG + chr1_2:9512184-9512203 None:intergenic 20.0%
!!! TAATTGTAAATTTGTTTTGG+GGG - chr1_2:9512191-9512210 Msa0054820:intron 20.0%
!! CATTAAAATTCAGAACTAAA+TGG + chr1_2:9513330-9513349 None:intergenic 20.0%
!!! CATTTAGTTCTGAATTTTAA+TGG - chr1_2:9513328-9513347 Msa0054820:intron 20.0%
!! TGAATTTCTTATAATTGTCA+TGG - chr1_2:9513941-9513960 Msa0054820:CDS 20.0%
!! AATGTTCATGTATATTTGAT+TGG - chr1_2:9514223-9514242 Msa0054820:intron 20.0%
!! AACATTAGTAAAGAAATGTT+AGG + chr1_2:9515435-9515454 None:intergenic 20.0%
!! ACAAAAAAAATATACCATGT+TGG + chr1_2:9515469-9515488 None:intergenic 20.0%
!!! ATTAGTCAATGACTTAATTT+TGG + chr1_2:9515492-9515511 None:intergenic 20.0%
!! TAATGATAAATATAGTTGTG+TGG - chr1_2:9516404-9516423 Msa0054820:intron 20.0%
!!! TTTTACTGAAATAAATTGGA+AGG + chr1_2:9516955-9516974 None:intergenic 20.0%
!! ATTGTTTAGAAAACAGAAAA+CGG - chr1_2:9517293-9517312 Msa0054820:intron 20.0%
!!! TTTTAACATGTGAAATTGAA+GGG + chr1_2:9517686-9517705 None:intergenic 20.0%
!! TATTATTATAGACATGGAAA+AGG + chr1_2:9517709-9517728 None:intergenic 20.0%
!! TGCAATTATTATTATAGACA+TGG + chr1_2:9517715-9517734 None:intergenic 20.0%
!! TCTTAAGTAAACAAAAACAA+CGG + chr1_2:9517805-9517824 None:intergenic 20.0%
!! GATGCAAAATAATTTAAAGA+TGG + chr1_2:9517856-9517875 None:intergenic 20.0%
!!! TTATTTTTCAATTCAACACA+AGG + chr1_2:9518090-9518109 None:intergenic 20.0%
!! AATCATAAAAACAAGTGAAT+GGG + chr1_2:9518293-9518312 None:intergenic 20.0%
!! TAATCATAAAAACAAGTGAA+TGG + chr1_2:9518294-9518313 None:intergenic 20.0%
!! TGAAGTTAGTAAAAAATCTA+AGG - chr1_2:9518550-9518569 Msa0054820:intron 20.0%
!! GTTTTTATATCAAGGGTTAT+TGG + chr1_2:9509549-9509568 None:intergenic 25.0%
!!! TGTTAAGTATTTTTTAGGGT+TGG - chr1_2:9510006-9510025 Msa0054820:CDS 25.0%
! AATTAACGATTGGAAACTAA+CGG - chr1_2:9510368-9510387 Msa0054820:intron 25.0%
!! ACAAACAACTAGTTTATGTA+AGG - chr1_2:9510459-9510478 Msa0054820:intron 25.0%
! TCTATTTATATGGAAAAACG+TGG - chr1_2:9510900-9510919 Msa0054820:CDS 25.0%
! AATTAGTTGCTTCACATAAA+AGG - chr1_2:9511037-9511056 Msa0054820:intron 25.0%
!!! ATTGGGATTCATTTTGATTT+TGG - chr1_2:9511550-9511569 Msa0054820:intron 25.0%
! GAAATTATATGCCTAATAGA+TGG + chr1_2:9511681-9511700 None:intergenic 25.0%
! GTAAAAAACCTTTCAAATAG+TGG + chr1_2:9512329-9512348 None:intergenic 25.0%
! AGCACATGTAATTAATGTTT+CGG + chr1_2:9512512-9512531 None:intergenic 25.0%
!!! TTATGTTGTCATTTTCTTTC+AGG - chr1_2:9512846-9512865 Msa0054820:intron 25.0%
! AAAGTCAGAATTGTATACAA+CGG + chr1_2:9513067-9513086 None:intergenic 25.0%
! TAAACAGAGTTTATAAAGCT+TGG + chr1_2:9513176-9513195 None:intergenic 25.0%
!! AAGCTTTATAAACTCTGTTT+AGG - chr1_2:9513175-9513194 Msa0054820:CDS 25.0%
!!! GAAATTTGCTTTTGACTAAA+TGG - chr1_2:9513291-9513310 Msa0054820:CDS 25.0%
! TTAATGGCTGATATCATTAT+TGG - chr1_2:9513344-9513363 Msa0054820:intron 25.0%
!! TTTTGATGTATAACTGGATA+TGG - chr1_2:9513422-9513441 Msa0054820:CDS 25.0%
! TTTGATGTATAACTGGATAT+GGG - chr1_2:9513423-9513442 Msa0054820:CDS 25.0%
! TGGAAAATATAAGATGAAAC+AGG - chr1_2:9513483-9513502 Msa0054820:CDS 25.0%
!! TTCTTTACACTATCTAAGAT+TGG + chr1_2:9513840-9513859 None:intergenic 25.0%
! TTCGTTTCATTCTTGTTAAT+AGG - chr1_2:9513886-9513905 Msa0054820:intron 25.0%
! TGCATTTCTTATAATTGTCA+TGG - chr1_2:9513965-9513984 Msa0054820:CDS 25.0%
! TATACATGAACATTAAAGCA+CGG + chr1_2:9514217-9514236 None:intergenic 25.0%
!!! ATTTATTTTGTTTTTGGTCC+AGG - chr1_2:9514278-9514297 Msa0054820:intron 25.0%
!! CATGTCAATTTTTCTTGATT+AGG - chr1_2:9514427-9514446 Msa0054820:CDS 25.0%
! TCCAAAGGTAATAATTTATC+TGG - chr1_2:9514620-9514639 Msa0054820:intron 25.0%
! ACCAGATAAATTATTACCTT+TGG + chr1_2:9514624-9514643 None:intergenic 25.0%
! TCCAAAGGTAATAATTTATC+TGG - chr1_2:9514620-9514639 Msa0054820:intron 25.0%
! ACCAGATAAATTATTACCTT+TGG + chr1_2:9514624-9514643 None:intergenic 25.0%
!! ATTTGATTTCTTAGAAGGTT+TGG + chr1_2:9514882-9514901 None:intergenic 25.0%
!! ACAACATTTGATTTCTTAGA+AGG + chr1_2:9514887-9514906 None:intergenic 25.0%
!!! AGAAATAGGAACTTCTTTTT+TGG + chr1_2:9514951-9514970 None:intergenic 25.0%
!! ACTAATTTTGCAAATGCTTT+AGG - chr1_2:9515506-9515525 Msa0054820:CDS 25.0%
! TGTACTTACATATTATCATC+TGG + chr1_2:9515931-9515950 None:intergenic 25.0%
! GATGATAATATGTAAGTACA+TGG - chr1_2:9515931-9515950 Msa0054820:CDS 25.0%
! ATAAGTTAACAACATCAAGA+TGG + chr1_2:9516786-9516805 None:intergenic 25.0%
! AAATTGCGGTATAATATATC+TGG - chr1_2:9516817-9516836 Msa0054820:intron 25.0%
! CTATATAACAAAACAGAAGT+AGG + chr1_2:9516982-9517001 None:intergenic 25.0%
! TAATAATTTCAGAGTCTGAT+CGG - chr1_2:9517123-9517142 Msa0054820:intron 25.0%
! TTACAATAATGTCATCTCAT+TGG - chr1_2:9517172-9517191 Msa0054820:intron 25.0%
!!! TGTTTTCATAGTTTTTTCCA+AGG + chr1_2:9517230-9517249 None:intergenic 25.0%
! TTGGAAAAAACTATGAAAAC+AGG - chr1_2:9517229-9517248 Msa0054820:intron 25.0%
! TTGTTTAGAAAACAGAAAAC+GGG - chr1_2:9517294-9517313 Msa0054820:intron 25.0%
! AGTTCTCTTAAAACAAAAAC+AGG - chr1_2:9517352-9517371 Msa0054820:intron 25.0%
!!! TTTTAGGTCTTATATGATGA+CGG - chr1_2:9517578-9517597 Msa0054820:intron 25.0%
! GGAAATATTGAATTTCAAAG+AGG - chr1_2:9517607-9517626 Msa0054820:intron 25.0%
!!! GTTTTAACATGTGAAATTGA+AGG + chr1_2:9517687-9517706 None:intergenic 25.0%
!! ATTGCAATTTTTCTCTTAAC+AGG - chr1_2:9517729-9517748 Msa0054820:intron 25.0%
!!! GTTTTGATGTATTCCTAATT+TGG - chr1_2:9517980-9517999 Msa0054820:intron 25.0%
! TACATTGTTTACAGAAATCT+TGG - chr1_2:9518042-9518061 Msa0054820:intron 25.0%
! ATCAAAAAAGGAAGTAAAGA+AGG - chr1_2:9518357-9518376 Msa0054820:intron 25.0%
! TAAAGAAGGAATCTTCTAAA+AGG - chr1_2:9518371-9518390 Msa0054820:intron 25.0%
!! TTAGTGAATGTTGTTGATTA+AGG - chr1_2:9518394-9518413 Msa0054820:intron 25.0%
!! GAGTTATTAACCTTTTACTT+TGG - chr1_2:9518438-9518457 Msa0054820:intron 25.0%
!!! ATCTTTGGATTTCTTTGTTT+TGG + chr1_2:9518747-9518766 None:intergenic 25.0%
!! TTAAGAGTGTTCTTACAATC+AGG + chr1_2:9509771-9509790 None:intergenic 30.0%
TAACAAACTTCATGCAACAA+AGG + chr1_2:9509873-9509892 None:intergenic 30.0%
! TTTGTTGCATGAAGTTTGTT+AGG - chr1_2:9509872-9509891 Msa0054820:CDS 30.0%
!! TTGTTGCATGAAGTTTGTTA+GGG - chr1_2:9509873-9509892 Msa0054820:CDS 30.0%
CTCAAATATCAACGAAATTC+AGG + chr1_2:9509943-9509962 None:intergenic 30.0%
TCATATACATCAAACAGTTG+AGG + chr1_2:9510062-9510081 None:intergenic 30.0%
!!! CAGTTTTGAGATTTGGAATT+TGG - chr1_2:9510171-9510190 Msa0054820:CDS 30.0%
!! ATTTGGATAGTGGATTTGTT+AGG - chr1_2:9510188-9510207 Msa0054820:intron 30.0%
!! TTTGGATAGTGGATTTGTTA+GGG - chr1_2:9510189-9510208 Msa0054820:intron 30.0%
! ATTTGTTAGGGTTACTTTCA+TGG - chr1_2:9510201-9510220 Msa0054820:intron 30.0%
!! AACTGATTTGTATGCTGATA+TGG - chr1_2:9510309-9510328 Msa0054820:intron 30.0%
! ATGTACTACTAGGTGTTTTT+GGG - chr1_2:9510407-9510426 Msa0054820:intron 30.0%
TTGGGAATAAAGAACGATAA+AGG - chr1_2:9510425-9510444 Msa0054820:intron 30.0%
AAAGAACGATAAAGGAATGT+AGG - chr1_2:9510433-9510452 Msa0054820:intron 30.0%
! TATTAGTTTAAGCACGTGTT+TGG + chr1_2:9510653-9510672 None:intergenic 30.0%
TCTTAGTTTAAGCACATGTT+TGG + chr1_2:9510738-9510757 None:intergenic 30.0%
TCATTTAAACAGGCTATGAA+AGG + chr1_2:9510800-9510819 None:intergenic 30.0%
AGGATGTTGAATACATTTCT+CGG - chr1_2:9510947-9510966 Msa0054820:intron 30.0%
GGAAATTGTTGGATATGAAA+AGG + chr1_2:9511250-9511269 None:intergenic 30.0%
TTTCATATCCAACAATTTCC+CGG - chr1_2:9511250-9511269 Msa0054820:intron 30.0%
TACAGAAAGCAATAAAGGAT+TGG + chr1_2:9511303-9511322 None:intergenic 30.0%
!! GTAGGCTTTTATTTGCAATT+GGG - chr1_2:9511533-9511552 Msa0054820:intron 30.0%
!! GCAAAAGCTCTAAAAAATGA+AGG - chr1_2:9511620-9511639 Msa0054820:CDS 30.0%
! CACACACACATATTTCATTT+TGG - chr1_2:9511844-9511863 Msa0054820:intron 30.0%
! TACCATAGTTACTTTAGTCT+TGG - chr1_2:9512108-9512127 Msa0054820:intron 30.0%
ATCCAAGACTAAAGTAACTA+TGG + chr1_2:9512113-9512132 None:intergenic 30.0%
!! TTACTTTAGTCTTGGATGTA+AGG - chr1_2:9512116-9512135 Msa0054820:intron 30.0%
AAAAACCTTTCAAATAGTGG+TGG + chr1_2:9512326-9512345 None:intergenic 30.0%
! TTTTACTAAATCACGAATCG+TGG - chr1_2:9512343-9512362 Msa0054820:intron 30.0%
AAATCATGGAGAAGTTATGT+AGG - chr1_2:9512468-9512487 Msa0054820:intron 30.0%
! TTATGTAGGTCTTATGACAA+TGG - chr1_2:9512482-9512501 Msa0054820:intron 30.0%
GCAATTAATGCTTTCAATGA+TGG + chr1_2:9512635-9512654 None:intergenic 30.0%
AGCATTTCTTGAAGACAATA+AGG - chr1_2:9513028-9513047 Msa0054820:intron 30.0%
TTTCTTGAAGACAATAAGGT+AGG - chr1_2:9513032-9513051 Msa0054820:intron 30.0%
TTCTTGAAGACAATAAGGTA+GGG - chr1_2:9513033-9513052 Msa0054820:intron 30.0%
TTAAGATTGTATCATGTGTG+AGG + chr1_2:9513257-9513276 None:intergenic 30.0%
!! TTTGCTTTTGACTAAATGGA+AGG - chr1_2:9513295-9513314 Msa0054820:CDS 30.0%
!! TTGCTTTTGACTAAATGGAA+GGG - chr1_2:9513296-9513315 Msa0054820:CDS 30.0%
CCAGTTATACATCAAAAGAA+AGG + chr1_2:9513419-9513438 None:intergenic 30.0%
! CCTTTCTTTTGATGTATAAC+TGG - chr1_2:9513416-9513435 Msa0054820:CDS 30.0%
TAGTGATTGTATTCTTTGCA+CGG - chr1_2:9513459-9513478 Msa0054820:CDS 30.0%
CAAAATCATTTCACCTAATC+TGG + chr1_2:9513574-9513593 None:intergenic 30.0%
! ATCTCTGTTTGAAACTTTCA+GGG - chr1_2:9513722-9513741 Msa0054820:CDS 30.0%
TAGTGTAAAGAAAGACAATG+AGG - chr1_2:9513848-9513867 Msa0054820:CDS 30.0%
TTCACAGCTTGCAATAAATT+GGG + chr1_2:9514077-9514096 None:intergenic 30.0%
ATTCACAGCTTGCAATAAAT+TGG + chr1_2:9514078-9514097 None:intergenic 30.0%
! GTCAATTTTTCTTGATTAGG+TGG - chr1_2:9514430-9514449 Msa0054820:CDS 30.0%
! AGTTCCTATTTCTCTTAATG+AGG - chr1_2:9514958-9514977 Msa0054820:intron 30.0%
CTATCCTCATTAAGAGAAAT+AGG + chr1_2:9514965-9514984 None:intergenic 30.0%
! AAGATTTCATCATCTAAAGC+AGG - chr1_2:9515034-9515053 Msa0054820:intron 30.0%
TGCAGAAGATATTTCGAAAA+AGG - chr1_2:9515174-9515193 Msa0054820:intron 30.0%
!! ATTCTAAAGTAAAACCAGCA+AGG - chr1_2:9515215-9515234 Msa0054820:intron 30.0%
AAAAAGAAGACACATGTGAA+AGG - chr1_2:9515340-9515359 Msa0054820:intron 30.0%
! TTTGCAAATGCTTTAGGTAA+TGG - chr1_2:9515512-9515531 Msa0054820:CDS 30.0%
! AAAAATGAGCAAAGTCTTGT+TGG - chr1_2:9515883-9515902 Msa0054820:CDS 30.0%
ATTGAGAAAAGAAGAGATCT+CGG + chr1_2:9515958-9515977 None:intergenic 30.0%
AAATCATTTAGAGAGAGAAG+AGG + chr1_2:9515990-9516009 None:intergenic 30.0%
!! AGTGTTCCTTTCATTTTAAC+TGG - chr1_2:9516035-9516054 Msa0054820:intron 30.0%
! ACCTATTTTGCAGTGTTTTT+AGG - chr1_2:9516228-9516247 Msa0054820:intron 30.0%
TCCTAAAAACACTGCAAAAT+AGG + chr1_2:9516232-9516251 None:intergenic 30.0%
!!! TGAGCTCACAATTTTTTTCT+TGG - chr1_2:9516528-9516547 Msa0054820:intron 30.0%
! AAAAGCTCTAATGAAATGCT+AGG - chr1_2:9516673-9516692 Msa0054820:intron 30.0%
! AAAGCTCTAATGAAATGCTA+GGG - chr1_2:9516674-9516693 Msa0054820:intron 30.0%
TGTTGTTAACTTATTCACCA+TGG - chr1_2:9516792-9516811 Msa0054820:intron 30.0%
TATTCACCATGGTAAAATTG+CGG - chr1_2:9516803-9516822 Msa0054820:intron 30.0%
! ATTATACCGCAATTTTACCA+TGG + chr1_2:9516812-9516831 None:intergenic 30.0%
!! ATCTTCTGCAGGTTTTATAA+AGG - chr1_2:9516847-9516866 Msa0054820:intron 30.0%
!! GAACAGCTTACTTTTCAAAT+GGG + chr1_2:9517010-9517029 None:intergenic 30.0%
!! TGAACAGCTTACTTTTCAAA+TGG + chr1_2:9517011-9517030 None:intergenic 30.0%
AGTGAAAACAAGGTCATTAT+TGG + chr1_2:9517259-9517278 None:intergenic 30.0%
AAAACAAGACAGTGAAAACA+AGG + chr1_2:9517269-9517288 None:intergenic 30.0%
!!! ACAAAGGCAACTCTTTTTTT+TGG - chr1_2:9517395-9517414 Msa0054820:intron 30.0%
!!! CAAAGGCAACTCTTTTTTTT+GGG - chr1_2:9517396-9517415 Msa0054820:intron 30.0%
GATGAGATGAGATTAAGAAA+TGG - chr1_2:9517432-9517451 Msa0054820:intron 30.0%
CATATAAGACCTAAAACAGA+GGG + chr1_2:9517574-9517593 None:intergenic 30.0%
TCATATAAGACCTAAAACAG+AGG + chr1_2:9517575-9517594 None:intergenic 30.0%
! TTTTTCTCTTAACAGGAAGA+AGG - chr1_2:9517736-9517755 Msa0054820:intron 30.0%
TTGATGTATTCCTAATTTGG+TGG - chr1_2:9517983-9518002 Msa0054820:intron 30.0%
! AATGTAGTTTGAGCTTTTAG+TGG + chr1_2:9518028-9518047 None:intergenic 30.0%
TCTTCATGTGATTTATTCTG+TGG - chr1_2:9518113-9518132 Msa0054820:intron 30.0%
!!! AGCTTTTGCCTTTAGTTTTT+GGG - chr1_2:9518220-9518239 Msa0054820:intron 30.0%
AAAAAGCTCAGCTAGAAAAT+GGG + chr1_2:9518250-9518269 None:intergenic 30.0%
!!! AGCTTTTTGCCTTTAGTTTT+TGG - chr1_2:9518262-9518281 Msa0054820:intron 30.0%
!!! GCTTTTTGCCTTTAGTTTTT+GGG - chr1_2:9518263-9518282 Msa0054820:intron 30.0%
!!! GTTTTCCCTTTCTTTTTTAG+CGG + chr1_2:9518325-9518344 None:intergenic 30.0%
AAATGCTGGTGAATCAAAAA+AGG - chr1_2:9518345-9518364 Msa0054820:intron 30.0%
TGTTTCAACATCATCATCTT+TGG + chr1_2:9518762-9518781 None:intergenic 30.0%
CAGCAAATTAAATTTCACCT+TGG + chr1_2:9518897-9518916 None:intergenic 30.0%
AAGAACGAAGGTTTCAACAA+TGG - chr1_2:9509654-9509673 Msa0054820:CDS 35.0%
CGATTTCTTCGTTAAATTCG+TGG - chr1_2:9509804-9509823 Msa0054820:CDS 35.0%
! GAGATTTGGAATTTGGATAG+TGG - chr1_2:9510178-9510197 Msa0054820:intron 35.0%
!! ATAGGTTGTTTTCCAACAAG+TGG - chr1_2:9510280-9510299 Msa0054820:intron 35.0%
!! TAGGTTGTTTTCCAACAAGT+GGG - chr1_2:9510281-9510300 Msa0054820:intron 35.0%
TGGAAACTAACGGTATATCT+TGG - chr1_2:9510378-9510397 Msa0054820:intron 35.0%
CTAACGGTATATCTTGGTAT+AGG - chr1_2:9510384-9510403 Msa0054820:intron 35.0%
TTGGTATAGGATGTACTACT+AGG - chr1_2:9510397-9510416 Msa0054820:intron 35.0%
! GATGTACTACTAGGTGTTTT+TGG - chr1_2:9510406-9510425 Msa0054820:intron 35.0%
!!! TTTTTGAGACACGTGCAAAA+AGG - chr1_2:9510591-9510610 Msa0054820:intron 35.0%
!!! TTTTGAGACACGTGCAAAAA+GGG - chr1_2:9510592-9510611 Msa0054820:intron 35.0%
TAAAATTTCGCCTGTTGTAG+TGG - chr1_2:9511003-9511022 Msa0054820:intron 35.0%
CAAATAACGCGATCTAACAT+GGG + chr1_2:9511150-9511169 None:intergenic 35.0%
TCAAATAACGCGATCTAACA+TGG + chr1_2:9511151-9511170 None:intergenic 35.0%
TGTTGGATATGAAAAGGCAA+AGG + chr1_2:9511244-9511263 None:intergenic 35.0%
AGAGCTACAGAAAGCAATAA+AGG + chr1_2:9511308-9511327 None:intergenic 35.0%
!! ACTGTTTTGTTCCTTATTCC+TGG - chr1_2:9511487-9511506 Msa0054820:intron 35.0%
TTTGTTCCTTATTCCTGGAT+TGG - chr1_2:9511492-9511511 Msa0054820:intron 35.0%
!! GGTAGGCTTTTATTTGCAAT+TGG - chr1_2:9511532-9511551 Msa0054820:intron 35.0%
!!! TGGGCCTATTTTAATGAACT+TGG + chr1_2:9511652-9511671 None:intergenic 35.0%
GCCTAATAGATGGATCATAT+GGG + chr1_2:9511671-9511690 None:intergenic 35.0%
TGCCTAATAGATGGATCATA+TGG + chr1_2:9511672-9511691 None:intergenic 35.0%
TGATTTCCTCCAACATAACA+CGG + chr1_2:9511987-9512006 None:intergenic 35.0%
ACAACGACGAAAATTAAACG+AGG + chr1_2:9512252-9512271 None:intergenic 35.0%
CTATACCACCACTATTTGAA+AGG - chr1_2:9512318-9512337 Msa0054820:intron 35.0%
CTATACTACAACAGATTGAC+TGG + chr1_2:9512429-9512448 None:intergenic 35.0%
AAATTGAAAGCTGCCTATCA+AGG - chr1_2:9512567-9512586 Msa0054820:intron 35.0%
GTGATTGTTCAATCCTTGAT+AGG + chr1_2:9512583-9512602 None:intergenic 35.0%
GCATTTAGCATAGATTCAGA+AGG + chr1_2:9512605-9512624 None:intergenic 35.0%
TTCATTTGACCATCATCGTA+AGG + chr1_2:9512749-9512768 None:intergenic 35.0%
! TTACGATGATGGTCAAATGA+AGG - chr1_2:9512748-9512767 Msa0054820:intron 35.0%
!!! TGTTGTCATTTTCTTTCAGG+AGG - chr1_2:9512849-9512868 Msa0054820:intron 35.0%
! TTTTCTTTCAGGAGGTCTTT+AGG - chr1_2:9512857-9512876 Msa0054820:intron 35.0%
! TGACTTTTGCAACTGTTTCA+AGG + chr1_2:9512951-9512970 None:intergenic 35.0%
TTGAAACAGTTGCAAAAGTC+AGG - chr1_2:9512950-9512969 Msa0054820:CDS 35.0%
CTGAAACATCTCCAAAATGA+GGG + chr1_2:9513010-9513029 None:intergenic 35.0%
TCTTGAAGACAATAAGGTAG+GGG - chr1_2:9513034-9513053 Msa0054820:intron 35.0%
CTGTTTAGGCTTATATCTCT+AGG - chr1_2:9513189-9513208 Msa0054820:CDS 35.0%
AGTGATTGTATTCTTTGCAC+GGG - chr1_2:9513460-9513479 Msa0054820:CDS 35.0%
ACACACTTCTTCACACTAAT+AGG - chr1_2:9513548-9513567 Msa0054820:CDS 35.0%
! CATCTCTGTTTGAAACTTTC+AGG - chr1_2:9513721-9513740 Msa0054820:CDS 35.0%
! AGAAAATGTTTTCTCGTCCA+TGG - chr1_2:9513755-9513774 Msa0054820:intron 35.0%
GAGGATCATTATAGTTTCCA+TGG + chr1_2:9513775-9513794 None:intergenic 35.0%
GTAAAGAAAGACAATGAGGT+TGG - chr1_2:9513852-9513871 Msa0054820:CDS 35.0%
GAATACCTTGGGTATTTCTT+TGG - chr1_2:9514094-9514113 Msa0054820:intron 35.0%
ATCATCCAAAGAAATACCCA+AGG + chr1_2:9514102-9514121 None:intergenic 35.0%
TGATGTCTCTTTGCATATTG+AGG + chr1_2:9514141-9514160 None:intergenic 35.0%
CAAAGAGACATCAGATAACT+TGG - chr1_2:9514148-9514167 Msa0054820:intron 35.0%
! AATGATGTATGTGCTACTAG+TGG - chr1_2:9514176-9514195 Msa0054820:CDS 35.0%
! TTGTTTACCCTTCAGCTTTT+GGG - chr1_2:9514395-9514414 Msa0054820:CDS 35.0%
TCATTATCCCAAAAGCTGAA+GGG + chr1_2:9514405-9514424 None:intergenic 35.0%
TTCATTATCCCAAAAGCTGA+AGG + chr1_2:9514406-9514425 None:intergenic 35.0%
AAGTCCCTTAAGAATCAAGA+TGG - chr1_2:9514578-9514597 Msa0054820:intron 35.0%
GGTACCATCTTGATTCTTAA+GGG + chr1_2:9514585-9514604 None:intergenic 35.0%
TTATTACCTTTGGACAGAAC+AGG + chr1_2:9514614-9514633 None:intergenic 35.0%
TTATTACCTTTGGACAGAAC+AGG + chr1_2:9514614-9514633 None:intergenic 35.0%
ATCAAATGTTGTCAGTGAGA+AGG - chr1_2:9514895-9514914 Msa0054820:intron 35.0%
!! TTTGTCATTCTCTGAAGTTC+CGG + chr1_2:9515002-9515021 None:intergenic 35.0%
! ATTTCATCATCTAAAGCAGG+TGG - chr1_2:9515037-9515056 Msa0054820:intron 35.0%
!! ATTTCGAAAAAGGTGTCTGA+AGG - chr1_2:9515184-9515203 Msa0054820:intron 35.0%
AAAATCTTCTGCTGAAGATG+AGG - chr1_2:9515384-9515403 Msa0054820:intron 35.0%
GTTCATTCATATCACCAACA+TGG - chr1_2:9515452-9515471 Msa0054820:intron 35.0%
AACCAAAGATGAACATTCAG+AGG - chr1_2:9515563-9515582 Msa0054820:CDS 35.0%
!!! GTTCACACTTTTTCTTTTCC+TGG + chr1_2:9515624-9515643 None:intergenic 35.0%
! TTCATGATGCTTTGTCCTTT+TGG - chr1_2:9515679-9515698 Msa0054820:intron 35.0%
GCAAAAAGAACAGTTCCAAA+AGG + chr1_2:9515697-9515716 None:intergenic 35.0%
! CTGTTCTTTTTGCAGCTATA+TGG - chr1_2:9515704-9515723 Msa0054820:intron 35.0%
TTGGAAAACGAGTGAAAGTT+TGG - chr1_2:9515902-9515921 Msa0054820:CDS 35.0%
TCAGTATGCACATGAAAGAA+TGG + chr1_2:9516068-9516087 None:intergenic 35.0%
CAACAGCAAACAAGTGTAAT+GGG + chr1_2:9516130-9516149 None:intergenic 35.0%
TCAGTTTCAGTCTCTATTTC+CGG - chr1_2:9516312-9516331 Msa0054820:intron 35.0%
TAAAAGCCAAAGCTAAGCTA+GGG + chr1_2:9516379-9516398 None:intergenic 35.0%
TTCATGTGTGCTATACAGTT+AGG - chr1_2:9516495-9516514 Msa0054820:intron 35.0%
AACATGGTCTCACTACAATA+AGG + chr1_2:9516605-9516624 None:intergenic 35.0%
! TAAGAAGCACAAGGTGATTT+GGG - chr1_2:9516897-9516916 Msa0054820:intron 35.0%
TAAATTGGAAGGAGACAACA+GGG + chr1_2:9516944-9516963 None:intergenic 35.0%
ATAAATTGGAAGGAGACAAC+AGG + chr1_2:9516945-9516964 None:intergenic 35.0%
TTTGCATCAATGTTCGTAGT+TGG - chr1_2:9517868-9517887 Msa0054820:intron 35.0%
TTCAATTCAACACAAGGCAT+GGG + chr1_2:9518084-9518103 None:intergenic 35.0%
TTTCAATTCAACACAAGGCA+TGG + chr1_2:9518085-9518104 None:intergenic 35.0%
!!! GAGCTTTTGCCTTTAGTTTT+TGG - chr1_2:9518219-9518238 Msa0054820:intron 35.0%
CAAAAAGCTCAGCTAGAAAA+TGG + chr1_2:9518251-9518270 None:intergenic 35.0%
TTTAGGCCGCTAAAAAAGAA+AGG - chr1_2:9518316-9518335 Msa0054820:intron 35.0%
TTAGGCCGCTAAAAAAGAAA+GGG - chr1_2:9518317-9518336 Msa0054820:intron 35.0%
AAGAAAGGGAAAACAAATGC+TGG - chr1_2:9518331-9518350 Msa0054820:intron 35.0%
CACTGCTAAACCAAAGTAAA+AGG + chr1_2:9518451-9518470 None:intergenic 35.0%
!! CTTTTACTTTGGTTTAGCAG+TGG - chr1_2:9518449-9518468 Msa0054820:intron 35.0%
ATCAGATTTGCCAACAATCT+TGG + chr1_2:9518528-9518547 None:intergenic 35.0%
AAGATTGTTGGCAAATCTGA+TGG - chr1_2:9518527-9518546 Msa0054820:intron 35.0%
AAGGATTCTGCACAAAAAAC+TGG - chr1_2:9518569-9518588 Msa0054820:intron 35.0%
AAAAACTGGTGGTAAATCTG+AGG - chr1_2:9518583-9518602 Msa0054820:intron 35.0%
AACAATTCCAAGAAGACTGA+TGG - chr1_2:9518719-9518738 Msa0054820:intron 35.0%
AAGCAAGAAAGTCTGAAAAG+TGG - chr1_2:9518806-9518825 Msa0054820:CDS 35.0%
AAAAGTGGAAAATCCAAGCA+AGG - chr1_2:9518821-9518840 Msa0054820:CDS 35.0%
!! GGTGAAATTTAATTTGCTGC+AGG - chr1_2:9518898-9518917 Msa0054820:five_prime_UTR 35.0%
CTCTGATGATTCATCAAAAG+AGG - chr1_2:9518943-9518962 Msa0054820:five_prime_UTR 35.0%
TAAGACACCAAGTTCTTCAA+AGG - chr1_2:9518982-9519001 Msa0054820:five_prime_UTR 35.0%
AACAATGGCTTCCATCGATA+AGG - chr1_2:9509669-9509688 Msa0054820:CDS 40.0%
AGATTATCCACAGAAGAAGG+AGG + chr1_2:9509739-9509758 None:intergenic 40.0%
AGCAGATTATCCACAGAAGA+AGG + chr1_2:9509742-9509761 None:intergenic 40.0%
! TTGAATATGCTGACTACCCA+GGG - chr1_2:9510236-9510255 Msa0054820:intron 40.0%
!! AGGTTGTTTTCCAACAAGTG+GGG - chr1_2:9510282-9510301 Msa0054820:intron 40.0%
!!! TCAGTTTTTTCCCCACTTGT+TGG + chr1_2:9510295-9510314 None:intergenic 40.0%
TTAAGCACGTGTTTGGTTGT+GGG + chr1_2:9510646-9510665 None:intergenic 40.0%
TTTAAGCACGTGTTTGGTTG+TGG + chr1_2:9510647-9510666 None:intergenic 40.0%
CACATGTTTGGTTGTGTAGT+AGG + chr1_2:9510726-9510745 None:intergenic 40.0%
GGGCAGGAAATCATTTACTT+GGG + chr1_2:9511184-9511203 None:intergenic 40.0%
TATGAAAAGGCAAAGGTCGA+CGG + chr1_2:9511237-9511256 None:intergenic 40.0%
! ATTGCGCTACTTTGCAAAGT+AGG + chr1_2:9511343-9511362 None:intergenic 40.0%
TGCAAAGTAGCGCAATGAAA+TGG - chr1_2:9511347-9511366 Msa0054820:intron 40.0%
CGCAATGAAATGGAAGAGAA+TGG - chr1_2:9511357-9511376 Msa0054820:intron 40.0%
! TTAAAGCGTGGGCTCTTTTA+TGG - chr1_2:9511590-9511609 Msa0054820:intron 40.0%
! TGGGCTCTTTTATGGTAAAG+AGG - chr1_2:9511598-9511617 Msa0054820:intron 40.0%
GCCCATATGATCCATCTATT+AGG - chr1_2:9511667-9511686 Msa0054820:intron 40.0%
GTTATGTTGGAGGAAATCAG+TGG - chr1_2:9511988-9512007 Msa0054820:intron 40.0%
! ATTTTCGTCGTTGTCCATCT+CGG - chr1_2:9512258-9512277 Msa0054820:intron 40.0%
CTATTTACTGCAATCCGAGA+TGG + chr1_2:9512275-9512294 None:intergenic 40.0%
TCTCGGATTGCAGTAAATAG+TGG - chr1_2:9512275-9512294 Msa0054820:intron 40.0%
CAAATAGTGGTGGTATAGCA+CGG + chr1_2:9512316-9512335 None:intergenic 40.0%
ATCACGAATCGTGGAACAAT+AGG - chr1_2:9512352-9512371 Msa0054820:intron 40.0%
TCACGAATCGTGGAACAATA+GGG - chr1_2:9512353-9512372 Msa0054820:intron 40.0%
! AACAGATTGACTGGTTCACA+GGG + chr1_2:9512420-9512439 None:intergenic 40.0%
! TCTTGTTATCTCACTGAAGC+AGG + chr1_2:9512708-9512727 None:intergenic 40.0%
TACATGATAAGTCAAGCCGA+TGG - chr1_2:9512905-9512924 Msa0054820:CDS 40.0%
AAGTCCTCTTTGAGTACCAT+CGG + chr1_2:9512924-9512943 None:intergenic 40.0%
GCTGAAACATCTCCAAAATG+AGG + chr1_2:9513011-9513030 None:intergenic 40.0%
! CGATTTTGTGGGATCAAGTT+CGG + chr1_2:9513133-9513152 None:intergenic 40.0%
!! TCCCACAAAATCGACTTGTA+CGG - chr1_2:9513140-9513159 Msa0054820:CDS 40.0%
!! ACCGTACAAGTCGATTTTGT+GGG + chr1_2:9513144-9513163 None:intergenic 40.0%
! GCTTATATCTCTAGGAGATG+TGG - chr1_2:9513197-9513216 Msa0054820:CDS 40.0%
AAGAAAGGATAGCGTACAAC+AGG + chr1_2:9513404-9513423 None:intergenic 40.0%
TCACACTAATAGGCCAGATT+AGG - chr1_2:9513558-9513577 Msa0054820:CDS 40.0%
! TTCTAGTTGCAGTGTGTTTC+TGG - chr1_2:9513644-9513663 Msa0054820:CDS 40.0%
!! GTGTTTCTGGTTTCTTTACC+TGG - chr1_2:9513657-9513676 Msa0054820:CDS 40.0%
!! TTCTGGTTTCTTTACCTGGT+TGG - chr1_2:9513661-9513680 Msa0054820:CDS 40.0%
GGATGCAAAATGTGTGAACA+TGG - chr1_2:9513691-9513710 Msa0054820:CDS 40.0%
CTTCACTTTCTTCAAGACAG+AGG + chr1_2:9513794-9513813 None:intergenic 40.0%
!! AAGACAATGAGGTTGGTGTT+TGG - chr1_2:9513859-9513878 Msa0054820:CDS 40.0%
TTTGCCAATTGCTCGAAAGT+TGG - chr1_2:9514013-9514032 Msa0054820:CDS 40.0%
TTGCCAATTGCTCGAAAGTT+GGG - chr1_2:9514014-9514033 Msa0054820:CDS 40.0%
TCCTTGAAAGTTGTGCAACA+AGG - chr1_2:9514045-9514064 Msa0054820:CDS 40.0%
ATTGCAAGCTGTGAATACCT+TGG - chr1_2:9514082-9514101 Msa0054820:intron 40.0%
TTGCAAGCTGTGAATACCTT+GGG - chr1_2:9514083-9514102 Msa0054820:intron 40.0%
! ATGTGCTACTAGTGGTCATA+TGG - chr1_2:9514184-9514203 Msa0054820:CDS 40.0%
! GTTGTTTACCCTTCAGCTTT+TGG - chr1_2:9514394-9514413 Msa0054820:CDS 40.0%
! ATTATCTTGTTGTGGTGGTG+TGG + chr1_2:9514477-9514496 None:intergenic 40.0%
CGGTACCATCTTGATTCTTA+AGG + chr1_2:9514586-9514605 None:intergenic 40.0%
TAATGATGAGCGCGATGATA+TGG - chr1_2:9514643-9514662 Msa0054820:intron 40.0%
ATGGTACTTCTTTCCAGCTT+TGG + chr1_2:9514695-9514714 None:intergenic 40.0%
AGTACCATCAAGAAGCAAGA+TGG - chr1_2:9514707-9514726 Msa0054820:CDS 40.0%
AGTACCATCTTGCTTCTTGA+TGG + chr1_2:9514714-9514733 None:intergenic 40.0%
TAATGATGAGCGCGATGATA+TGG - chr1_2:9514643-9514662 Msa0054820:intron 40.0%
TAGCTTTCTTTCCTTTCCTC+CGG + chr1_2:9514844-9514863 None:intergenic 40.0%
! GATAGTGTTGTTGAAGCTAC+CGG - chr1_2:9514980-9514999 Msa0054820:intron 40.0%
!! AAAGGTGTCTGAAGGAACAT+CGG - chr1_2:9515192-9515211 Msa0054820:intron 40.0%
TTCACATCAGAGCTACGAAT+GGG + chr1_2:9515259-9515278 None:intergenic 40.0%
TTTCACATCAGAGCTACGAA+TGG + chr1_2:9515260-9515279 None:intergenic 40.0%
AACTGTTGTACACGCAGTTA+TGG - chr1_2:9515279-9515298 Msa0054820:intron 40.0%
! GTCTTCTTTTTCTTGTCCTC+CGG + chr1_2:9515331-9515350 None:intergenic 40.0%
TGTGAAAGGTAGCTCAGAAA+AGG - chr1_2:9515354-9515373 Msa0054820:intron 40.0%
GTGAAAGGTAGCTCAGAAAA+GGG - chr1_2:9515355-9515374 Msa0054820:intron 40.0%
TTCTGCTGAAGATGAGGATA+AGG - chr1_2:9515390-9515409 Msa0054820:intron 40.0%
CTCCTCTGAATGTTCATCTT+TGG + chr1_2:9515568-9515587 None:intergenic 40.0%
TTCCTCTTCAGAGTTGTCTT+AGG + chr1_2:9515594-9515613 None:intergenic 40.0%
TTTCTTGATATCAGACCCCT+GGG + chr1_2:9515866-9515885 None:intergenic 40.0%
! TTTTCTTGATATCAGACCCC+TGG + chr1_2:9515867-9515886 None:intergenic 40.0%
GAAAACGAGTGAAAGTTTGG+TGG - chr1_2:9515905-9515924 Msa0054820:CDS 40.0%
AAAGGAACACTGAATGCCAT+GGG + chr1_2:9516026-9516045 None:intergenic 40.0%
! GTGGTGCCAGTTAAAATGAA+AGG + chr1_2:9516044-9516063 None:intergenic 40.0%
ATGCACATGAAAGAATGGAG+TGG + chr1_2:9516063-9516082 None:intergenic 40.0%
ACATTGAGTGAACTTCAGTG+AGG + chr1_2:9516091-9516110 None:intergenic 40.0%
GCAACAGCAAACAAGTGTAA+TGG + chr1_2:9516131-9516150 None:intergenic 40.0%
!! ACACTTGTTTGCTGTTGCAT+AGG - chr1_2:9516133-9516152 Msa0054820:intron 40.0%
!! CACTTGTTTGCTGTTGCATA+GGG - chr1_2:9516134-9516153 Msa0054820:intron 40.0%
TGCTGTTGCATAGGGTTATA+TGG - chr1_2:9516142-9516161 Msa0054820:intron 40.0%
TACTTGGAATCAGCCAAATC+AGG + chr1_2:9516172-9516191 None:intergenic 40.0%
! AAGTAGTTCTCCCCTGTTTT+GGG - chr1_2:9516187-9516206 Msa0054820:intron 40.0%
CTTACTATCTCCCAAAACAG+GGG + chr1_2:9516200-9516219 None:intergenic 40.0%
GCTTACTATCTCCCAAAACA+GGG + chr1_2:9516201-9516220 None:intergenic 40.0%
TGCTTACTATCTCCCAAAAC+AGG + chr1_2:9516202-9516221 None:intergenic 40.0%
!!! TGTTTTTAGGAAGCTCCTAG+TGG - chr1_2:9516241-9516260 Msa0054820:intron 40.0%
! AGTCTCTATTTCCGGCATTT+TGG - chr1_2:9516320-9516339 Msa0054820:intron 40.0%
! GTCTCTATTTCCGGCATTTT+GGG - chr1_2:9516321-9516340 Msa0054820:intron 40.0%
! TTTTGTCCCTAGCTTAGCTT+TGG - chr1_2:9516370-9516389 Msa0054820:intron 40.0%
CTAAAAGCCAAAGCTAAGCT+AGG + chr1_2:9516380-9516399 None:intergenic 40.0%
!!! CTAGCTTAGCTTTGGCTTTT+AGG - chr1_2:9516378-9516397 Msa0054820:intron 40.0%
TCTAATGAAATGCTAGGGCT+AGG - chr1_2:9516679-9516698 Msa0054820:intron 40.0%
CTAATGAAATGCTAGGGCTA+GGG - chr1_2:9516680-9516699 Msa0054820:intron 40.0%
AATCACCTTGTGCTTCTTAG+TGG + chr1_2:9516896-9516915 None:intergenic 40.0%
! CTAAGAAGCACAAGGTGATT+TGG - chr1_2:9516896-9516915 Msa0054820:intron 40.0%
! TCTACTTGTCCCTCTGTTTT+AGG - chr1_2:9517562-9517581 Msa0054820:intron 40.0%
ACATATCAGCAGAAGGTTCA+GGG + chr1_2:9517777-9517796 None:intergenic 40.0%
TACATATCAGCAGAAGGTTC+AGG + chr1_2:9517778-9517797 None:intergenic 40.0%
GGAACATACATATCAGCAGA+AGG + chr1_2:9517784-9517803 None:intergenic 40.0%
AGGCAGAATTCCACCAAATT+AGG + chr1_2:9517996-9518015 None:intergenic 40.0%
! GCTTTTAGTGGCACAAATCA+AGG + chr1_2:9518016-9518035 None:intergenic 40.0%
! TCTCATTTTGCCTGACCAAT+TGG - chr1_2:9518165-9518184 Msa0054820:intron 40.0%
TGGGCAAACCCAAAAACTAA+AGG + chr1_2:9518231-9518250 None:intergenic 40.0%
TGGGCAAACCCAAAAACTAA+AGG + chr1_2:9518231-9518250 None:intergenic 40.0%
! TTACTTTGGTTTAGCAGTGG+AGG - chr1_2:9518452-9518471 Msa0054820:intron 40.0%
!! TTTTGGGTAGACTTTGCAGA+TGG + chr1_2:9518503-9518522 None:intergenic 40.0%
ACCCAAAAGTCCAAGATTGT+TGG - chr1_2:9518515-9518534 Msa0054820:intron 40.0%
! GCCAACAATCTTGGACTTTT+GGG + chr1_2:9518519-9518538 None:intergenic 40.0%
! TGCCAACAATCTTGGACTTT+TGG + chr1_2:9518520-9518539 None:intergenic 40.0%
GATTCTGCACAAAAAACTGG+TGG - chr1_2:9518572-9518591 Msa0054820:intron 40.0%
! TTTGGAACCATCAGTCTTCT+TGG + chr1_2:9518729-9518748 None:intergenic 40.0%
CAGACTTTCTTGCTTAGACT+TGG + chr1_2:9518801-9518820 None:intergenic 40.0%
AATCTTAGGTGTTCCTTGCT+TGG + chr1_2:9518837-9518856 None:intergenic 40.0%
TTGGAGGAAGATGCAATCTT+AGG + chr1_2:9518851-9518870 None:intergenic 40.0%
!!! ACTCTTGGTGGATTTTGTCT+TGG + chr1_2:9518870-9518889 None:intergenic 40.0%
AAAAGAGGTTGAAGTCGCAA+AGG - chr1_2:9518958-9518977 Msa0054820:five_prime_UTR 40.0%
! GCGAGATCCGATTTTCACTA+TGG - chr1_2:9509469-9509488 Msa0054820:CDS 45.0%
ACAAGATCTGCGAAGAACGA+AGG - chr1_2:9509642-9509661 Msa0054820:CDS 45.0%
CTCTTCAAGCTCCTTATCGA+TGG + chr1_2:9509683-9509702 None:intergenic 45.0%
CATCGATAAGGAGCTTGAAG+AGG - chr1_2:9509681-9509700 Msa0054820:CDS 45.0%
TCTAGATCCTCCTTCTTCTG+TGG - chr1_2:9509729-9509748 Msa0054820:CDS 45.0%
! CTTGAATATGCTGACTACCC+AGG - chr1_2:9510235-9510254 Msa0054820:intron 45.0%
CTCAAAAAAACGCGCGTCTA+GGG + chr1_2:9510521-9510540 None:intergenic 45.0%
CAAAAAGGGCTGTAAACACG+TGG - chr1_2:9510606-9510625 Msa0054820:intron 45.0%
TAAGCACGTGTTTGGTTGTG+GGG + chr1_2:9510645-9510664 None:intergenic 45.0%
ACACGTGTAAAAAGAGCCGT+AGG - chr1_2:9510684-9510703 Msa0054820:intron 45.0%
ACATATCACGCCACTACAAC+AGG + chr1_2:9511016-9511035 None:intergenic 45.0%
GATCGAACTCCTTAAAGGTG+CGG + chr1_2:9511092-9511111 None:intergenic 45.0%
ACTGCGATCGAACTCCTTAA+AGG + chr1_2:9511097-9511116 None:intergenic 45.0%
GGGGCAGGAAATCATTTACT+TGG + chr1_2:9511185-9511204 None:intergenic 45.0%
GACTCTCCATTACAGTTTGG+GGG + chr1_2:9511215-9511234 None:intergenic 45.0%
GGACTCTCCATTACAGTTTG+GGG + chr1_2:9511216-9511235 None:intergenic 45.0%
CGGACTCTCCATTACAGTTT+GGG + chr1_2:9511217-9511236 None:intergenic 45.0%
ACGGACTCTCCATTACAGTT+TGG + chr1_2:9511218-9511237 None:intergenic 45.0%
TTTACTGGCCGGGAAATTGT+TGG + chr1_2:9511261-9511280 None:intergenic 45.0%
AGAACCAGCAATTTACTGGC+CGG + chr1_2:9511272-9511291 None:intergenic 45.0%
GTCGAGAACCAGCAATTTAC+TGG + chr1_2:9511276-9511295 None:intergenic 45.0%
! GCTTTCTGTAGCTCTGTTTC+TGG - chr1_2:9511313-9511332 Msa0054820:intron 45.0%
! CTTTCCAAACACAAGTGCTG+TGG - chr1_2:9511413-9511432 Msa0054820:intron 45.0%
GACTCACCAATCCAGGAATA+AGG + chr1_2:9511501-9511520 None:intergenic 45.0%
!! TATTCCTGGATTGGTGAGTC+TGG - chr1_2:9511501-9511520 Msa0054820:intron 45.0%
!! ATTCCTGGATTGGTGAGTCT+GGG - chr1_2:9511502-9511521 Msa0054820:intron 45.0%
ATTGGTGAGTCTGGGAAGTT+AGG - chr1_2:9511510-9511529 Msa0054820:intron 45.0%
TTGGTGAGTCTGGGAAGTTA+GGG - chr1_2:9511511-9511530 Msa0054820:intron 45.0%
GCTTTAATTGACGGAGCACA+TGG + chr1_2:9511577-9511596 None:intergenic 45.0%
TGCTCCGTCAATTAAAGCGT+GGG - chr1_2:9511579-9511598 Msa0054820:intron 45.0%
AGAGCCCACGCTTTAATTGA+CGG + chr1_2:9511586-9511605 None:intergenic 45.0%
AACCCTACCTAACTTCGAGA+GGG + chr1_2:9511895-9511914 None:intergenic 45.0%
AAACCCTACCTAACTTCGAG+AGG + chr1_2:9511896-9511915 None:intergenic 45.0%
CTCCTTGATCCGTGTTATGT+TGG - chr1_2:9511975-9511994 Msa0054820:intron 45.0%
CTCCAACATAACACGGATCA+AGG + chr1_2:9511980-9511999 None:intergenic 45.0%
CTTGATCCGTGTTATGTTGG+AGG - chr1_2:9511978-9511997 Msa0054820:intron 45.0%
GGAGGAAATCAGTGGTATGT+TGG - chr1_2:9511996-9512015 Msa0054820:intron 45.0%
GGAAATCAGTGGTATGTTGG+AGG - chr1_2:9511999-9512018 Msa0054820:intron 45.0%
CACGAATCGTGGAACAATAG+GGG - chr1_2:9512354-9512373 Msa0054820:intron 45.0%
TTCACAGGGAAACTCAGTAG+CGG + chr1_2:9512406-9512425 None:intergenic 45.0%
! CAACAGATTGACTGGTTCAC+AGG + chr1_2:9512421-9512440 None:intergenic 45.0%
TGTTATCTCACTGAAGCAGG+AGG + chr1_2:9512705-9512724 None:intergenic 45.0%
TGCAAAAGTCAGGTCATGTG+TGG - chr1_2:9512960-9512979 Msa0054820:CDS 45.0%
! TGAATGCGATGCCCTCATTT+TGG - chr1_2:9512996-9513015 Msa0054820:intron 45.0%
!! CACCGTACAAGTCGATTTTG+TGG + chr1_2:9513145-9513164 None:intergenic 45.0%
! TCTCTAGGAGATGTGGAACT+CGG - chr1_2:9513204-9513223 Msa0054820:CDS 45.0%
GATTGTATTCTTTGCACGGG+TGG - chr1_2:9513463-9513482 Msa0054820:CDS 45.0%
!! CTTTACCTGGTTGGACTAGT+TGG - chr1_2:9513670-9513689 Msa0054820:CDS 45.0%
TGCTGTCATCATGATTCAGG+AGG - chr1_2:9513989-9514008 Msa0054820:CDS 45.0%
TGCCAATTGCTCGAAAGTTG+GGG - chr1_2:9514015-9514034 Msa0054820:CDS 45.0%
! GCCTTGTTGCACAACTTTCA+AGG + chr1_2:9514049-9514068 None:intergenic 45.0%
! CTGATTTGCGATCATGTACC+TGG + chr1_2:9514299-9514318 None:intergenic 45.0%
! GCAGCATTATCTTGTTGTGG+TGG + chr1_2:9514482-9514501 None:intergenic 45.0%
CCAGCAGCATTATCTTGTTG+TGG + chr1_2:9514485-9514504 None:intergenic 45.0%
CCACAACAAGATAATGCTGC+TGG - chr1_2:9514482-9514501 Msa0054820:CDS 45.0%
CCATTGCTCATGACAGACTT+GGG + chr1_2:9514518-9514537 None:intergenic 45.0%
TTTGGACAGAACAGGAGAGT+CGG + chr1_2:9514606-9514625 None:intergenic 45.0%
CGACAGTAAAGAACCAAAGC+TGG - chr1_2:9514808-9514827 Msa0054820:intron 45.0%
!! CAAAGCTGGAAAGAAGTACC+CGG - chr1_2:9514693-9514712 Msa0054820:CDS 45.0%
AGCTTTCTTTCCTTTCCTCC+GGG + chr1_2:9514843-9514862 None:intergenic 45.0%
AACCAACAGCGTCAGATTCA+AGG + chr1_2:9515063-9515082 None:intergenic 45.0%
ATCGTGATTGCTCTCACTTG+GGG + chr1_2:9515092-9515111 None:intergenic 45.0%
CATCGTGATTGCTCTCACTT+GGG + chr1_2:9515093-9515112 None:intergenic 45.0%
TCATCGTGATTGCTCTCACT+TGG + chr1_2:9515094-9515113 None:intergenic 45.0%
AGTAAAACCAGCAAGGCCAT+CGG - chr1_2:9515222-9515241 Msa0054820:intron 45.0%
!!! ATGGGTCCTTTTTTTGCCGA+TGG + chr1_2:9515241-9515260 None:intergenic 45.0%
ACGCAGTTATGGCTGATGTT+GGG - chr1_2:9515290-9515309 Msa0054820:intron 45.0%
! CTCCTAAGACAACTCTGAAG+AGG - chr1_2:9515589-9515608 Msa0054820:CDS 45.0%
ATCTTCTGACTGTTGTCCCA+GGG - chr1_2:9515847-9515866 Msa0054820:CDS 45.0%
! TTTTCTGTCTCCTAGACCCA+TGG - chr1_2:9516007-9516026 Msa0054820:intron 45.0%
GAAAGGAACACTGAATGCCA+TGG + chr1_2:9516027-9516046 None:intergenic 45.0%
GTTATATGGCCCACCTGATT+TGG - chr1_2:9516156-9516175 Msa0054820:intron 45.0%
TGGAATCAGCCAAATCAGGT+GGG + chr1_2:9516168-9516187 None:intergenic 45.0%
TTGGAATCAGCCAAATCAGG+TGG + chr1_2:9516169-9516188 None:intergenic 45.0%
CAAAACAGGGGAGAACTACT+TGG + chr1_2:9516188-9516207 None:intergenic 45.0%
! CAAGTAGTTCTCCCCTGTTT+TGG - chr1_2:9516186-9516205 Msa0054820:intron 45.0%
CCAAAGAAATGTGAGCCACT+AGG + chr1_2:9516259-9516278 None:intergenic 45.0%
CCTAGTGGCTCACATTTCTT+TGG - chr1_2:9516256-9516275 Msa0054820:intron 45.0%
TGCAGAGGCAAAAACAGAAC+AGG + chr1_2:9516290-9516309 None:intergenic 45.0%
AGACTGAAACTGAAGTGCAG+AGG + chr1_2:9516305-9516324 None:intergenic 45.0%
TCATTCATCCAGCCTTAGCT+TGG + chr1_2:9516347-9516366 None:intergenic 45.0%
! TTCCTCCACTAAGAAGCACA+AGG - chr1_2:9516888-9516907 Msa0054820:intron 45.0%
GAGACAACAGGGTAAAGTGA+AGG + chr1_2:9516933-9516952 None:intergenic 45.0%
!! CAGAGTCTGATCGGTTTTGT+TGG - chr1_2:9517132-9517151 Msa0054820:intron 45.0%
CAACTGTCAGATGCAAGCAA+AGG + chr1_2:9517542-9517561 None:intergenic 45.0%
!! CTTATATGATGACGGTGACG+AGG - chr1_2:9517586-9517605 Msa0054820:intron 45.0%
! AGTTGATGCTGATCCAGATG+TGG - chr1_2:9517649-9517668 Msa0054820:intron 45.0%
GCATCAATGTTCGTAGTTGG+TGG - chr1_2:9517871-9517890 Msa0054820:intron 45.0%
CTGCAACTATGACCACAAGA+GGG + chr1_2:9517902-9517921 None:intergenic 45.0%
GCTACGCAGATATCAGACAA+GGG + chr1_2:9517925-9517944 None:intergenic 45.0%
AGCTACGCAGATATCAGACA+AGG + chr1_2:9517926-9517945 None:intergenic 45.0%
! CATTTTGCCTGACCAATTGG+TGG - chr1_2:9518168-9518187 Msa0054820:intron 45.0%
GAGGATCGTTCTGTGAAAAG+CGG - chr1_2:9518602-9518621 Msa0054820:intron 45.0%
GAAAAGCGGTGGTAAATCTG+AGG - chr1_2:9518616-9518635 Msa0054820:intron 45.0%
GAGGATCGTTCTGTGAAAAG+TGG - chr1_2:9518602-9518621 Msa0054820:intron 45.0%
GATCGTTCTGTGAAAAGTGG+TGG - chr1_2:9518638-9518657 Msa0054820:intron 45.0%
GAAAAGTGGTGGTAAGTCTG+AGG - chr1_2:9518649-9518668 Msa0054820:intron 45.0%
GAGGATCGATCTGTGAAAAG+TGG - chr1_2:9518668-9518687 Msa0054820:intron 45.0%
!!! CTTGGTGGATTTTGTCTTGG+AGG + chr1_2:9518867-9518886 None:intergenic 45.0%
TTTCACCTTGGCAGTACTCT+TGG + chr1_2:9518885-9518904 None:intergenic 45.0%
ACACCAAGTTCTTCAAAGGC+CGG - chr1_2:9518986-9519005 Msa0054820:five_prime_UTR 45.0%
GGGCGCTCCATAGTGAAAAT+CGG + chr1_2:9509479-9509498 None:intergenic 50.0%
GAGCTTGAAGAGGAGCTTCT+TGG - chr1_2:9509691-9509710 Msa0054820:CDS 50.0%
! ATATGCTGACTACCCAGGGT+TGG - chr1_2:9510240-9510259 Msa0054820:intron 50.0%
!! GATGTCGGCGTTGACTGAAT+AGG - chr1_2:9510262-9510281 Msa0054820:intron 50.0%
CCTCAAAAAAACGCGCGTCT+AGG + chr1_2:9510522-9510541 None:intergenic 50.0%
!!! CCTAGACGCGCGTTTTTTTG+AGG - chr1_2:9510519-9510538 Msa0054820:intron 50.0%
TAAAAAGAGCCGTAGGCACG+TGG - chr1_2:9510691-9510710 Msa0054820:intron 50.0%
ACACGATCTCCGCACCTTTA+AGG - chr1_2:9511080-9511099 Msa0054820:intron 50.0%
TCCATTACAGTTTGGGGGTG+GGG + chr1_2:9511210-9511229 None:intergenic 50.0%
CTCCATTACAGTTTGGGGGT+GGG + chr1_2:9511211-9511230 None:intergenic 50.0%
TCTCCATTACAGTTTGGGGG+TGG + chr1_2:9511212-9511231 None:intergenic 50.0%
TTTCCCGGCCAGTAAATTGC+TGG - chr1_2:9511265-9511284 Msa0054820:intron 50.0%
GAACCAGCAATTTACTGGCC+GGG + chr1_2:9511271-9511290 None:intergenic 50.0%
GGTAGACGCAAGTGCATTTG+TGG - chr1_2:9511378-9511397 Msa0054820:intron 50.0%
! TCCAAACACAAGTGCTGTGG+CGG - chr1_2:9511416-9511435 Msa0054820:intron 50.0%
TGGCGGCACATTGTTTCCAT+GGG - chr1_2:9511433-9511452 Msa0054820:intron 50.0%
TGAGTCTGGGAAGTTAGGGT+AGG - chr1_2:9511515-9511534 Msa0054820:intron 50.0%
GTGCTCCGTCAATTAAAGCG+TGG - chr1_2:9511578-9511597 Msa0054820:intron 50.0%
ACCCTACCTAACTTCGAGAG+GGG + chr1_2:9511894-9511913 None:intergenic 50.0%
ATAGTGGTGGTATAGCACGG+CGG + chr1_2:9512313-9512332 None:intergenic 50.0%
!! CCATCATCGTAAGGAGCATC+AGG + chr1_2:9512740-9512759 None:intergenic 50.0%
CCTGATGCTCCTTACGATGA+TGG - chr1_2:9512737-9512756 Msa0054820:intron 50.0%
CAAGCCGATGGTACTCAAAG+AGG - chr1_2:9512917-9512936 Msa0054820:CDS 50.0%
! CAGGTCATGTGTGGTAATGC+TGG - chr1_2:9512969-9512988 Msa0054820:CDS 50.0%
! TCGACTTGTACGGTGAGCAT+TGG - chr1_2:9513150-9513169 Msa0054820:CDS 50.0%
! CTCTAGGAGATGTGGAACTC+GGG - chr1_2:9513205-9513224 Msa0054820:CDS 50.0%
TGCATCCAACTAGTCCAACC+AGG + chr1_2:9513678-9513697 None:intergenic 50.0%
GGCTGCTGTCATCATGATTC+AGG - chr1_2:9513986-9514005 Msa0054820:CDS 50.0%
GCCAATTGCTCGAAAGTTGG+GGG - chr1_2:9514016-9514035 Msa0054820:CDS 50.0%
TCCCCCAACTTTCGAGCAAT+TGG + chr1_2:9514020-9514039 None:intergenic 50.0%
CCCAAGTCTGTCATGAGCAA+TGG - chr1_2:9514515-9514534 Msa0054820:intron 50.0%
GCCATTGCTCATGACAGACT+TGG + chr1_2:9514519-9514538 None:intergenic 50.0%
CATGAGCAATGGCATTGCAC+AGG - chr1_2:9514526-9514545 Msa0054820:intron 50.0%
GACTCTCCTGTTCTGTCCAA+AGG - chr1_2:9514605-9514624 Msa0054820:intron 50.0%
CGACAGTGAAGATCCAAAGC+TGG - chr1_2:9514679-9514698 Msa0054820:CDS 50.0%
GACTCTCCTGTTCTGTCCAA+AGG - chr1_2:9514605-9514624 Msa0054820:intron 50.0%
CGGGTACTTCTTTCCAGCTT+TGG + chr1_2:9514824-9514843 None:intergenic 50.0%
!! GAAAGAAGTACCCGGAGGAA+AGG - chr1_2:9514830-9514849 Msa0054820:intron 50.0%
TGATTGCTCTCACTTGGGGA+AGG + chr1_2:9515088-9515107 None:intergenic 50.0%
! CGATAGCTCTGCGAAAGAAG+TGG - chr1_2:9515150-9515169 Msa0054820:intron 50.0%
!!! TTTTTTGCCGATGGCCTTGC+TGG + chr1_2:9515232-9515251 None:intergenic 50.0%
GCAAGGCCATCGGCAAAAAA+AGG - chr1_2:9515232-9515251 Msa0054820:intron 50.0%
CACGCAGTTATGGCTGATGT+TGG - chr1_2:9515289-9515308 Msa0054820:intron 50.0%
GATCTTCTGACTGTTGTCCC+AGG - chr1_2:9515846-9515865 Msa0054820:CDS 50.0%
TCTTCTGACTGTTGTCCCAG+GGG - chr1_2:9515848-9515867 Msa0054820:CDS 50.0%
ACACTGAATGCCATGGGTCT+AGG + chr1_2:9516020-9516039 None:intergenic 50.0%
! CTTAGCTTGGCCCAAAATGC+CGG + chr1_2:9516334-9516353 None:intergenic 50.0%
! ATTTTGGGCCAAGCTAAGGC+TGG - chr1_2:9516336-9516355 Msa0054820:intron 50.0%
CTGGCAACACAATCTTCTGC+AGG - chr1_2:9516836-9516855 Msa0054820:intron 50.0%
CACCTTGTGCTTCTTAGTGG+AGG + chr1_2:9516893-9516912 None:intergenic 50.0%
CTGTCAGATGCAAGCAAAGG+CGG + chr1_2:9517539-9517558 None:intergenic 50.0%
TGATGCTGATCCAGATGTGG+TGG - chr1_2:9517652-9517671 Msa0054820:intron 50.0%
GATGCTGATCCAGATGTGGT+GGG - chr1_2:9517653-9517672 Msa0054820:intron 50.0%
! TTGGTGGCATTTCCCTCTTG+TGG - chr1_2:9517887-9517906 Msa0054820:intron 50.0%
GCTGCAACTATGACCACAAG+AGG + chr1_2:9517903-9517922 None:intergenic 50.0%
AATGCAGCCACCAATTGGTC+AGG + chr1_2:9518178-9518197 None:intergenic 50.0%
! GACCAATTGGTGGCTGCATT+TGG - chr1_2:9518178-9518197 Msa0054820:intron 50.0%
CACCAAATGCAGCCACCAAT+TGG + chr1_2:9518183-9518202 None:intergenic 50.0%
GATCGTTCTGTGAAAAGCGG+TGG - chr1_2:9518605-9518624 Msa0054820:intron 50.0%
!! ATCCACCAAGAGTACTGCCA+AGG - chr1_2:9518877-9518896 Msa0054820:five_prime_UTR 50.0%
! CTTCCGGCCTTTGAAGAACT+TGG + chr1_2:9518992-9519011 None:intergenic 50.0%
! GAAGAGGAGCTTCTTGGTGC+TGG - chr1_2:9509697-9509716 Msa0054820:CDS 55.0%
GACTACCCAGGGTTGGATGT+CGG - chr1_2:9510247-9510266 Msa0054820:intron 55.0%
CACGTGTTTGGTTGTGGGGT+AGG + chr1_2:9510641-9510660 None:intergenic 55.0%
TTACAGTTTGGGGGTGGGGT+GGG + chr1_2:9511206-9511225 None:intergenic 55.0%
ATTACAGTTTGGGGGTGGGG+TGG + chr1_2:9511207-9511226 None:intergenic 55.0%
ACCCCACCCCCAAACTGTAA+TGG - chr1_2:9511206-9511225 Msa0054820:intron 55.0%
GTGGCGGCACATTGTTTCCA+TGG - chr1_2:9511432-9511451 Msa0054820:intron 55.0%
CAGCTCACAATGCTCACCCA+TGG + chr1_2:9511452-9511471 None:intergenic 55.0%
! GTGAGCATTGTGAGCTGCAG+CGG - chr1_2:9511455-9511474 Msa0054820:intron 55.0%
CTTCCCAGACTCACCAATCC+AGG + chr1_2:9511508-9511527 None:intergenic 55.0%
CTACCTAACTTCGAGAGGGG+GGG + chr1_2:9511891-9511910 None:intergenic 55.0%
CCTACCTAACTTCGAGAGGG+GGG + chr1_2:9511892-9511911 None:intergenic 55.0%
CCCTACCTAACTTCGAGAGG+GGG + chr1_2:9511893-9511912 None:intergenic 55.0%
CCCCCTCTCGAAGTTAGGTA+GGG - chr1_2:9511890-9511909 Msa0054820:intron 55.0%
CAAATCAGCAGAAGAGCCCG+TGG - chr1_2:9514311-9514330 Msa0054820:intron 55.0%
AGCAATGGCATTGCACAGGC+TGG - chr1_2:9514530-9514549 Msa0054820:intron 55.0%
!! AGCTGGAAAGAAGTACCCGG+AGG - chr1_2:9514825-9514844 Msa0054820:intron 55.0%
GGCCTTGAATCTGACGCTGT+TGG - chr1_2:9515058-9515077 Msa0054820:intron 55.0%
! CGGCATTTTGGGCCAAGCTA+AGG - chr1_2:9516332-9516351 Msa0054820:intron 55.0%
GGAGAGAAACCCACCACATC+TGG + chr1_2:9517665-9517684 None:intergenic 55.0%
TGCTTAGACTTGGCAGCAGC+AGG + chr1_2:9518791-9518810 None:intergenic 55.0%
CACCTTGGCAGTACTCTTGG+TGG + chr1_2:9518882-9518901 None:intergenic 55.0%
TTCTTCAAAGGCCGGAAGCG+AGG - chr1_2:9518994-9519013 Msa0054820:five_prime_UTR 55.0%
TCCACTCTTGACCTCGCTTC+CGG + chr1_2:9519008-9519027 None:intergenic 55.0%
CAACGCCGACATCCAACCCT+GGG + chr1_2:9510255-9510274 None:intergenic 60.0%
TCAACGCCGACATCCAACCC+TGG + chr1_2:9510256-9510275 None:intergenic 60.0%
TACAGTTTGGGGGTGGGGTG+GGG + chr1_2:9511205-9511224 None:intergenic 60.0%
GCCGCCACAGCACTTGTGTT+TGG + chr1_2:9511420-9511439 None:intergenic 60.0%
TTCGAGAGGGGGGGTTGCAA+GGG + chr1_2:9511882-9511901 None:intergenic 60.0%
CAACCCCCCCTCTCGAAGTT+AGG - chr1_2:9511885-9511904 Msa0054820:intron 60.0%
CCCCCCTCTCGAAGTTAGGT+AGG - chr1_2:9511889-9511908 Msa0054820:intron 60.0%
CAGTAGCGGCTATCGCGTAG+TGG + chr1_2:9512392-9512411 None:intergenic 60.0%
ATCAGCAGAAGAGCCCGTGG+AGG - chr1_2:9514314-9514333 Msa0054820:CDS 60.0%
AGAAGAGCCCGTGGAGGAGT+CGG - chr1_2:9514320-9514339 Msa0054820:CDS 60.0%
TGGGCCATCTTCGCTGAAGC+CGG - chr1_2:9515309-9515328 Msa0054820:intron 60.0%
TCCTCCGGCTTCAGCGAAGA+TGG + chr1_2:9515316-9515335 None:intergenic 60.0%
! CTGAAGAGGAAGCGCACTCC+AGG - chr1_2:9515603-9515622 Msa0054820:CDS 60.0%
GACTTGGCAGCAGCAGGCTT+TGG + chr1_2:9518785-9518804 None:intergenic 60.0%
! TCTAGGGCTGTCGTGGACGC+GGG + chr1_2:9510505-9510524 None:intergenic 65.0%
! GTCTAGGGCTGTCGTGGACG+CGG + chr1_2:9510506-9510525 None:intergenic 65.0%
TTGCCGCAGCCACGTGCCTA+CGG + chr1_2:9510703-9510722 None:intergenic 65.0%
ACAGTTTGGGGGTGGGGTGG+GGG + chr1_2:9511204-9511223 None:intergenic 65.0%
CTTCGAGAGGGGGGGTTGCA+AGG + chr1_2:9511883-9511902 None:intergenic 65.0%
!! ACCTGTGCCGACTCCTCCAC+GGG + chr1_2:9514330-9514349 None:intergenic 65.0%
!! CACCTGTGCCGACTCCTCCA+CGG + chr1_2:9514331-9514350 None:intergenic 65.0%
GCCATCTTCGCTGAAGCCGG+AGG - chr1_2:9515312-9515331 Msa0054820:intron 65.0%
GCCGGAAGCGAGGTCAAGAG+TGG - chr1_2:9519004-9519023 Msa0054820:five_prime_UTR 65.0%
! ACGCGCGTCTAGGGCTGTCG+TGG + chr1_2:9510512-9510531 None:intergenic 70.0%
GAGCCGTAGGCACGTGGCTG+CGG - chr1_2:9510697-9510716 Msa0054820:intron 70.0%
TTTGGGGGTGGGGTGGGGGC+AGG + chr1_2:9511200-9511219 None:intergenic 75.0%
GCCCGTGGAGGAGTCGGCAC+AGG - chr1_2:9514326-9514345 Msa0054820:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 9509469 9519048 9509469 ID=Msa0054820;Name=Msa0054820
chr1_2 mRNA 9509469 9519048 9509469 ID=Msa0054820-mRNA-1;Parent=Msa0054820;Name=Msa0054820-mRNA-1;_AED=0.06;_eAED=0.06;_QI=204|0.76|0.66|1|0.70|0.72|18|0|915
chr1_2 exon 9509469 9510048 9509469 ID=Msa0054820-mRNA-1:exon:3561;Parent=Msa0054820-mRNA-1
chr1_2 exon 9510125 9510196 9510125 ID=Msa0054820-mRNA-1:exon:3560;Parent=Msa0054820-mRNA-1
chr1_2 exon 9510723 9510766 9510723 ID=Msa0054820-mRNA-1:exon:3559;Parent=Msa0054820-mRNA-1
chr1_2 exon 9510847 9510933 9510847 ID=Msa0054820-mRNA-1:exon:3558;Parent=Msa0054820-mRNA-1
chr1_2 exon 9511608 9511659 9511608 ID=Msa0054820-mRNA-1:exon:3557;Parent=Msa0054820-mRNA-1
chr1_2 exon 9512576 9512649 9512576 ID=Msa0054820-mRNA-1:exon:3556;Parent=Msa0054820-mRNA-1
chr1_2 exon 9512882 9512989 9512882 ID=Msa0054820-mRNA-1:exon:3555;Parent=Msa0054820-mRNA-1
chr1_2 exon 9513106 9513321 9513106 ID=Msa0054820-mRNA-1:exon:3554;Parent=Msa0054820-mRNA-1
chr1_2 exon 9513349 9513521 9513349 ID=Msa0054820-mRNA-1:exon:3553;Parent=Msa0054820-mRNA-1
chr1_2 exon 9513534 9513761 9513534 ID=Msa0054820-mRNA-1:exon:3552;Parent=Msa0054820-mRNA-1
chr1_2 exon 9513789 9513890 9513789 ID=Msa0054820-mRNA-1:exon:3551;Parent=Msa0054820-mRNA-1
chr1_2 exon 9513918 9514068 9513918 ID=Msa0054820-mRNA-1:exon:3550;Parent=Msa0054820-mRNA-1
chr1_2 exon 9514170 9514217 9514170 ID=Msa0054820-mRNA-1:exon:3549;Parent=Msa0054820-mRNA-1
chr1_2 exon 9514312 9514509 9514312 ID=Msa0054820-mRNA-1:exon:3548;Parent=Msa0054820-mRNA-1
chr1_2 exon 9514648 9514774 9514648 ID=Msa0054820-mRNA-1:exon:3547;Parent=Msa0054820-mRNA-1
chr1_2 exon 9515468 9515649 9515468 ID=Msa0054820-mRNA-1:exon:3546;Parent=Msa0054820-mRNA-1
chr1_2 exon 9515748 9515951 9515748 ID=Msa0054820-mRNA-1:exon:3545;Parent=Msa0054820-mRNA-1
chr1_2 exon 9518743 9519048 9518743 ID=Msa0054820-mRNA-1:exon:3544;Parent=Msa0054820-mRNA-1
chr1_2 five_prime_UTR 9518845 9519048 9518845 ID=Msa0054820-mRNA-1:five_prime_utr;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9518743 9518844 9518743 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9515748 9515951 9515748 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9515468 9515649 9515468 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9514648 9514774 9514648 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9514312 9514509 9514312 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9514170 9514217 9514170 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9513918 9514068 9513918 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9513789 9513890 9513789 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9513534 9513761 9513534 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9513349 9513521 9513349 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9513106 9513321 9513106 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9512882 9512989 9512882 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9512576 9512649 9512576 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9511608 9511659 9511608 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9510847 9510933 9510847 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9510723 9510766 9510723 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9510125 9510196 9510125 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
chr1_2 CDS 9509469 9510048 9509469 ID=Msa0054820-mRNA-1:cds;Parent=Msa0054820-mRNA-1
Gene Sequence

>Msa0054820

ATGGCTTCCATCGATAAGGAGCTTGAAGAGGAGCTTCTTGGTGCTGGTAACAAGCTTCTAGATCCTCCTTCTTCTGTGGATAATCTGCTTGATATCCTGATTCAAATTGAAAGCTGCCTATCAAGGATTGAACAATCACCTTCTGAATCTATGCTAAATGCACTGTCTCCATCATTGAAAGCATTAATTGCTGATAAACTTTTAAAGCATTCAGACGTCGACGTCAAAGTTGCTCTTGCCTCCTGCTTCAGTGAGATAACAAGAATCACTGCACCTGATGCTCCTTACGATGATGGTCAAATGAAGGAGGTCTTTAGGTTAATTGTATCTTCATTTGAAAATCTACATGATAAGTCAAGCCGATGGTACTCAAAGAGGACTTTAATCCTTGAAACAGTTGCAAAAGTCAGGTCATGTGTGGTAATGCTGGATCTTGAATGCGATGCCCTCATTTTGGAGATGTTTCAGCATTTCTTGAAGACAATAAGGGAACATCATGCAGAAAATGTTTTCTCGTCCATGGAAACTATAATGATCCTCTGTCTTGAAGAAAGTGAAGAAATATCTCATGAGTTACTCTCACCAATCTTAGATAGTGTAAAGAAAGACAATGAGGAGGTTTTGCCAATTGCTCGAAAGTTGGGGGAAAGAGTCCTTGAAAGTTGTGCAACAAGGCTTAAACCCAATTTATTGCAAGCTGTGAATACCTTGGGTATTTCTTTGGATGATTATAGTGATGTTCTTGCCTCAATATGCAAAGAGACATCAGATAACTTGGCGCAAAATGATGTATGTGCTACTAGTGGTCATATGGTACATGATCGCAAATCAGCAGAAGAGCCCGTGGAGGAGTCGGCACAGGTGGATAGTGAGATTACAAAAGAAGCCACACCACCACAACAAGATAATGCTGCTGGAGAAAGATCTCCCAAGTCTGTCATGAGCAATGGCATTGCACAGGCTGGTGAAGATGATACTTTAGATGTTTCAAAGTCCCTTAAGAATCAAGATGGTAATAATTTATCTGGTAATGATGAGCGCGATGATATGGACACTGAAAAAATCGACAGTGAAGATCCAAAGCTGGAAAGAAGTACCATCAAGAAGCAAGATGGTAATAATTTATCTGGTAATGATGAGCGCGATGATATGGACACTGAAAAAATCGACAGTAAAGAACCAAAGCTGGAAAGAAGTACCCGGAGGAAAGGAAAGAAAGCTAGCTCTTCAAAGTCGACCAAACCTTCTAAGAAATCAAATGTTGTCAGTGAGAAGGAAGCTGAGAAAACAATTGACTCTAAAAGTTCCAAAAAAGAAGTTCCTATTTCTCTTAATGAGGATACTACCGGAACTTCAGAGAATGACAAAGAGATTAAAGCTAAGATTTCATCATCTAAAGCAGGTGGCCTTGAATCTGACGCTGTTGGTTCTCCTTCCCCAAGTGAGAGCAATCACGATGAGAATCGTTCTAAGAAACGTGCACGAACAAAAAAGAACGATAGCTCTGCGAAAGAAGTGTCTGAAGGAACATCGGATTCTAAAGTAAAACCAGCAAGGCCATCGGCAAAAAAAGGACCCATTCGTAGCTCTGATGTGAAAACTGTTGTACACGCAGTTATGGCTGATGTTGGGCCATCTTCGCTGAAGCCGGAGGACAAGAAAAAGAAGACACATGTGAAAGGTAGCTCAGAAAAGGGTCTAGCAAAATCTTCTGCTGAAGATGAGGATAAGGTAATGGTATCTTCACTTAAGTCAGCTACGAAAACAACCAAAGATGAACATTCAGAGGAGACTCCTAAGACAACTCTGAAGAGGAAGCGCACTCCAGGAAAAGAAAAAGGGTCTGATATCAAGAAAAATGAGCAAAGTCTTGTTGGAAAACGAGTGAAAGTTTGGTGGCCAGATGATAATATGTTTTATAAAGGTGTTGTTGATTCTTTTGATTCCTCCACTAAGAAGCACAAGGTCTTATATGATGACGGTGACGAGGAAATATTGAATTTCAAAGAGGAGAAATATGAAATTGTTGAAGTTGATGCTGATCCAGATGTGGAAGAAGGAAGTCATCGAGCAAGCCCTGAACCTTCTGCTGATATGCCGCTAAAAAAGAAAGGGAAAACAAATGCTGGTGAATCAAAAAAGGAAGTAAAGAAGGAATCTTCTAAAAGTGGAGGAGCAACATCGAGTAAATCAAAGACACCATCTGCAAAGTCTACCCAAAAGTCCAAGATTGTTGGCAAATCTGATGGTGAAGTTAGTAAAAAATCTAAGGATTCTGCACAAAAAACTGGTGGTAAATCTGAGGATCGTTCTGTGAAAAGCGGTGGTAAATCTGAGGATCGTTCTGTGAAAAGTGGTGGTAAGTCTGAGGATCGATCTGTGAAAAGTGGCAGCAAATCTGTTGATTCTGCACAAAAAAACAATTCCAAGAAGACTGATGGTTCCAAAACAAAGAAATCCAAAGATGATGATGTTGAAACACCAAAGCCTGCTGCTGCCAAGTCTAAGCAAGAAAGTCTGAAAAGTGGAAAATCCAAGCAAGGAACACCTAAGATTGCATCTTCCTCCAAGACAAAATCCACCAAGAGTACTGCCAAGGTGAAATTTAATTTGCTGCAGGAAGAAGATTCTGAAAATGAGAACTCTGATGATTCATCAAAAGAGGTTGAAGTCGCAAAGGTTAAGACACCAAGTTCTTCAAAGGCCGGAAGCGAGGTCAAGAGTGGAAAGAAGCGATCAAGAAACTAG
Protein sequence

>Msa0054820

MASIDKELEEELLGAGNKLLDPPSSVDNLLDILIQIESCLSRIEQSPSESMLNALSPSLKALIADKLLKHSDVDVKVALASCFSEITRITAPDAPYDDGQMKEVFRLIVSSFENLHDKSSRWYSKRTLILETVAKVRSCVVMLDLECDALILEMFQHFLKTIREHHAENVFSSMETIMILCLEESEEISHELLSPILDSVKKDNEEVLPIARKLGERVLESCATRLKPNLLQAVNTLGISLDDYSDVLASICKETSDNLAQNDVCATSGHMVHDRKSAEEPVEESAQVDSEITKEATPPQQDNAAGERSPKSVMSNGIAQAGEDDTLDVSKSLKNQDGNNLSGNDERDDMDTEKIDSEDPKLERSTIKKQDGNNLSGNDERDDMDTEKIDSKEPKLERSTRRKGKKASSSKSTKPSKKSNVVSEKEAEKTIDSKSSKKEVPISLNEDTTGTSENDKEIKAKISSSKAGGLESDAVGSPSPSESNHDENRSKKRARTKKNDSSAKEVSEGTSDSKVKPARPSAKKGPIRSSDVKTVVHAVMADVGPSSLKPEDKKKKTHVKGSSEKGLAKSSAEDEDKVMVSSLKSATKTTKDEHSEETPKTTLKRKRTPGKEKGSDIKKNEQSLVGKRVKVWWPDDNMFYKGVVDSFDSSTKKHKVLYDDGDEEILNFKEEKYEIVEVDADPDVEEGSHRASPEPSADMPLKKKGKTNAGESKKEVKKESSKSGGATSSKSKTPSAKSTQKSKIVGKSDGEVSKKSKDSAQKTGGKSEDRSVKSGGKSEDRSVKSGGKSEDRSVKSGSKSVDSAQKNNSKKTDGSKTKKSKDDDVETPKPAAAKSKQESLKSGKSKQGTPKIASSSKTKSTKSTAKVKFNLLQEEDSENENSDDSSKEVEVAKVKTPSSSKAGSEVKSGKKRSRN*