AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1087980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087980 MtrunA17_Chr1g0166021 90.962 343 30 1 1 342 12 354 0.0 651
Msa1087980 MtrunA17_Chr5g0418021 88.274 307 33 2 1 306 1 305 0.0 557
Msa1087980 MtrunA17_Chr2g0287551 53.043 115 42 2 197 299 69 183 9.50e-31 121
Msa1087980 MtrunA17_Chr2g0287551 53.333 90 39 1 1 87 1 90 1.38e-19 89.7
Msa1087980 MtrunA17_Chr2g0287621 55.952 84 36 1 217 299 77 160 1.70e-23 100
Msa1087980 MtrunA17_Chr2g0287621 69.118 68 15 1 1 62 8 75 2.68e-21 94.7
Msa1087980 MtrunA17_Chr1g0166031 74.545 55 13 1 246 299 1 55 6.59e-18 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1087980 AT4G32450.1 40.000 100 57 2 208 306 150 247 3.72e-14 73.9
Msa1087980 AT2G25580.2 29.333 150 91 2 206 355 137 271 3.63e-12 68.2
Msa1087980 AT2G25580.2 39.362 94 56 1 208 300 223 316 1.07e-11 66.6
Msa1087980 AT2G25580.1 29.333 150 91 2 206 355 137 271 3.63e-12 68.2
Msa1087980 AT2G25580.1 39.362 94 56 1 208 300 223 316 1.07e-11 66.6
Msa1087980 AT1G29710.1 37.398 123 72 3 178 299 62 180 5.22e-11 64.3

Find 162 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGATGGCCAAATGTTTAT+TGG 0.169942 7_3:+768123 Msa1087980:three_prime_UTR
TGTTAGGTTGTGAGTGTTTC+AGG 0.187442 7_3:-764928 None:intergenic
GTTTCATATTCCTGTGGATT+TGG 0.241893 7_3:+767807 Msa1087980:CDS
ATCTTCTGCAAACCCATTCT+TGG 0.249838 7_3:-768058 None:intergenic
TGCAAAGAGTTTCGTTAATC+TGG 0.261218 7_3:-765198 None:intergenic
ATTTATTTACTGAATTTAAA+AGG 0.263933 7_3:+768088 Msa1087980:three_prime_UTR
GAATGTAGTTCAAAGTAATT+TGG 0.263946 7_3:+767120 Msa1087980:CDS
CTGATGGCCAAATGTTTATT+GGG 0.265406 7_3:+768124 Msa1087980:three_prime_UTR
AGTTCAGAGCGAATTTATTA+TGG 0.265666 7_3:+767049 Msa1087980:CDS
TTTAGTCACATTTGAGATTA+GGG 0.266733 7_3:-764994 None:intergenic
ACTTAGGCCTATAGAGTATC+AGG 0.273971 7_3:+767324 Msa1087980:CDS
TTGTTAAGTTTATCTTTATA+TGG 0.273987 7_3:-767421 None:intergenic
ATGAATAGTTGTAGAGTTCA+TGG 0.283101 7_3:+768354 Msa1087980:three_prime_UTR
AATTACTTTGAACTACATTC+TGG 0.284486 7_3:-767117 None:intergenic
GGCTTTGGGATGCATCCTTA+TGG 0.299197 7_3:+767232 Msa1087980:CDS
TATGCTCCTGCAGGGATTAT+TGG 0.303015 7_3:+768883 Msa1087980:three_prime_UTR
TTGATAATTCAAGGGGCTTT+GGG 0.304013 7_3:+767218 Msa1087980:CDS
GTTGATAATTCAAGGGGCTT+TGG 0.305640 7_3:+767217 Msa1087980:CDS
GTGGCTAGTGATAGAGAATT+TGG 0.306818 7_3:-765018 None:intergenic
CCTAAGTAAACTATGTGAAT+TGG 0.322247 7_3:-767308 None:intergenic
AAGAAAATTGATGAGATGTT+AGG 0.328999 7_3:-764944 None:intergenic
TGAGATTAGGGTTCGCGATT+TGG 0.330131 7_3:-764982 None:intergenic
GAGATTAGGGTTCGCGATTT+GGG 0.343169 7_3:-764981 None:intergenic
TAGACATGATTGGTAGTATT+GGG 0.344181 7_3:+768259 Msa1087980:three_prime_UTR
CCAATAAACATTTGGCCATC+AGG 0.346033 7_3:-768123 None:intergenic
GTTTAGTCACATTTGAGATT+AGG 0.346664 7_3:-764995 None:intergenic
AGGGTTCGCGATTTGGGAAT+TGG 0.353220 7_3:-764975 None:intergenic
TCATCATCCGAGATGCTAAA+AGG 0.357561 7_3:+768838 Msa1087980:three_prime_UTR
GAGATATATGAAAACAGGTT+TGG 0.368916 7_3:-770911 None:intergenic
TAGATGTAGTCAACGTGTTC+AGG 0.371800 7_3:+767683 Msa1087980:CDS
AGATTAACGAAACTCTTTGC+AGG 0.372535 7_3:+765200 Msa1087980:five_prime_UTR
CTATGACATTGTACCAACTA+TGG 0.378147 7_3:+768218 Msa1087980:three_prime_UTR
TCAAAATGCAACATAAAGTT+GGG 0.378669 7_3:+767188 Msa1087980:CDS
GAGCGAATTTATTATGGATC+TGG 0.379674 7_3:+767055 Msa1087980:CDS
TTCAAAATGCAACATAAAGT+TGG 0.381156 7_3:+767187 Msa1087980:CDS
CAGCACATGCAATGGAATAT+TGG 0.381329 7_3:+767933 Msa1087980:three_prime_UTR
TACTTTGCTTAGACGTTTGA+GGG 0.386105 7_3:+768587 Msa1087980:three_prime_UTR
TATCTCCTGCTCGATATTCA+TGG 0.387446 7_3:-768536 None:intergenic
ACCATGAGATATATGAAAAC+AGG 0.388782 7_3:-770916 None:intergenic
TCTGAACTAGCATGATTATT+CGG 0.404469 7_3:-767034 None:intergenic
CTAAGTAAACTATGTGAATT+GGG 0.407861 7_3:-767307 None:intergenic
TTATCAAGCTAATGATTCTT+CGG 0.408169 7_3:+766958 Msa1087980:CDS
GGGTGGGTGTTGATAATTCA+AGG 0.409536 7_3:+767209 Msa1087980:CDS
AGTAATTTGGCAGAGCATAA+TGG 0.416866 7_3:+767133 Msa1087980:CDS
ATTACTTTGAACTACATTCT+GGG 0.421709 7_3:-767116 None:intergenic
ATACTTTGCTTAGACGTTTG+AGG 0.423921 7_3:+768586 Msa1087980:three_prime_UTR
TGATGTCCCTGATACTCTAT+AGG 0.426530 7_3:-767331 None:intergenic
AGATATATGAAAACAGGTTT+GGG 0.429207 7_3:-770910 None:intergenic
ACCTCTACACTTGGTTCCAT+TGG 0.430193 7_3:-768318 None:intergenic
GTAGACATGATTGGTAGTAT+TGG 0.435923 7_3:+768258 Msa1087980:three_prime_UTR
GGGATACTTCATCGTTTCTC+CGG 0.437339 7_3:-767287 None:intergenic
TGGCTAGTGATAGAGAATTT+GGG 0.439983 7_3:-765017 None:intergenic
TGCTGAACTGGTTGAGAAGT+TGG 0.441339 7_3:+768401 Msa1087980:three_prime_UTR
ATTAAGAATCTCCGTGTTTG+TGG 0.447294 7_3:+768765 Msa1087980:three_prime_UTR
CCAATTCACATAGTTTACTT+AGG 0.448250 7_3:+767308 Msa1087980:CDS
TTGCATGTGCTGACTTTAAG+AGG 0.454092 7_3:-767922 None:intergenic
AGCATAATGGAAGTGTCAAT+GGG 0.454704 7_3:+767146 Msa1087980:CDS
GAGCATAATGGAAGTGTCAA+TGG 0.455018 7_3:+767145 Msa1087980:CDS
AAATCATACAGAGAGAGAAA+TGG 0.455720 7_3:-765071 None:intergenic
TTTCATCAGCAAAATGCAAA+TGG 0.457793 7_3:+767004 Msa1087980:CDS
GGAAGTGTCAATGGGGACTT+TGG 0.460231 7_3:+767154 Msa1087980:CDS
AAGATTATTTCTGATCTTGT+GGG 0.464953 7_3:+768807 Msa1087980:three_prime_UTR
AAGAGAATTAACAGTAACTA+AGG 0.466113 7_3:-766837 None:intergenic
TCATAGTCCTAGCTAGCATA+TGG 0.469434 7_3:+771067 Msa1087980:three_prime_UTR
GAAGATTATTTCTGATCTTG+TGG 0.469862 7_3:+768806 Msa1087980:three_prime_UTR
ATAAAGCAGCTCGCCAAGAA+TGG 0.473579 7_3:+768045 Msa1087980:three_prime_UTR
AGAAGACATCATTAGAAACT+TGG 0.474931 7_3:-766804 None:intergenic
AGAAAAGCTTCATGCTTATG+TGG 0.476503 7_3:+767504 Msa1087980:CDS
CAATATACCATATGCTAGCT+AGG 0.478150 7_3:-771074 None:intergenic
TGGAACCAAGTGTAGAGGTA+TGG 0.478411 7_3:+768322 Msa1087980:three_prime_UTR
GTAAGTTTAGTAGACATGAT+TGG 0.483190 7_3:+768249 Msa1087980:three_prime_UTR
CACGTTGCAAATTGTATCAA+AGG 0.489215 7_3:+766890 Msa1087980:CDS
GATTTCTCATTCAAACGAGA+TGG 0.489777 7_3:-768426 None:intergenic
AAAATGGGCTATGCTCCTGC+AGG 0.490065 7_3:+768874 Msa1087980:three_prime_UTR
TTTACTGAATTTAAAAGGAG+TGG 0.492990 7_3:+768093 Msa1087980:three_prime_UTR
TTGAATGAGAAATCAAAAGT+TGG 0.502527 7_3:+768435 Msa1087980:three_prime_UTR
TTTGGTGCATGTAGTATGCT+GGG 0.503313 7_3:+768150 Msa1087980:three_prime_UTR
TGGGAATCTTGATGAAGCCT+TGG 0.504893 7_3:+768278 Msa1087980:three_prime_UTR
ATTACCAGCAAAATCGTCCT+AGG 0.507469 7_3:+766981 Msa1087980:CDS
CAAGTCTCTCACTGTGGCCA+AGG 0.509320 7_3:-768692 None:intergenic
AGCAGCGTGTCGTGTATTCA+AGG 0.510069 7_3:+770953 Msa1087980:three_prime_UTR
TAAAGCAGCTCGCCAAGAAT+GGG 0.512110 7_3:+768046 Msa1087980:three_prime_UTR
GATAAAGAAGATGCTCTCCT+TGG 0.513596 7_3:+768675 Msa1087980:three_prime_UTR
TACTACGAGCAGGACTGTTA+AGG 0.515339 7_3:-768731 None:intergenic
CTTGATAGTTCTTGCATGGA+GGG 0.516017 7_3:+767742 Msa1087980:CDS
GAGATTCTTAATTACTCTGA+TGG 0.522350 7_3:-768754 None:intergenic
ATTCAATCCAGTGTGGAGTC+GGG 0.522391 7_3:-770864 None:intergenic
CTGCTCGATATTCATGGATA+CGG 0.523593 7_3:-768530 None:intergenic
GGAACTTGATAGTTCTTGCA+TGG 0.523748 7_3:+767738 Msa1087980:CDS
TATTCAATCCAGTGTGGAGT+CGG 0.529846 7_3:-770865 None:intergenic
TGTCTCTCAAAAGAACCATA+AGG 0.532637 7_3:-767247 None:intergenic
AGTTCATGGAAACACTGAGC+TGG 0.532715 7_3:+768368 Msa1087980:three_prime_UTR
TGAGAGACTTGCTATTGCTA+AGG 0.533946 7_3:+768704 Msa1087980:three_prime_UTR
GGAACCAAGTGTAGAGGTAT+GGG 0.535116 7_3:+768323 Msa1087980:three_prime_UTR
TGTAAAACAACACACCTTGT+TGG 0.536468 7_3:+771124 Msa1087980:three_prime_UTR
CATGATTGGAGACTAGAATC+CGG 0.538532 7_3:+767268 Msa1087980:CDS
GTTCATGGAAACACTGAGCT+GGG 0.539395 7_3:+768369 Msa1087980:three_prime_UTR
CTTACATAATGTGCCATAGT+TGG 0.541096 7_3:-768231 None:intergenic
GTCTCCCATACCTCTACACT+TGG 0.544107 7_3:-768327 None:intergenic
ATAGAGTATCAGGGACATCA+TGG 0.546841 7_3:+767334 Msa1087980:CDS
ATGCTGGGAGATATTGTTGA+GGG 0.553989 7_3:+768165 Msa1087980:three_prime_UTR
TTCCACCGCTGCTGAAAGGT+GGG 0.554239 7_3:+766934 Msa1087980:CDS
CTTAAAGTCAGCACATGCAA+TGG 0.555458 7_3:+767925 Msa1087980:three_prime_UTR
TTTCCACCGCTGCTGAAAGG+TGG 0.558610 7_3:+766933 Msa1087980:CDS
GGATTGAATAACGCGGCTGT+TGG 0.559362 7_3:+770878 Msa1087980:three_prime_UTR
ATATTTCCACCGCTGCTGAA+AGG 0.560637 7_3:+766930 Msa1087980:CDS
AATGTCATAGTCCCTACTCA+TGG 0.560874 7_3:-768205 None:intergenic
ACTCTGATGGTACTACGAGC+AGG 0.566713 7_3:-768741 None:intergenic
ACGTTGCAAATTGTATCAAA+GGG 0.567880 7_3:+766891 Msa1087980:CDS
TTGCATGGAGGGTGAAGTGA+AGG 0.569190 7_3:+767753 Msa1087980:CDS
AGGGTGCACATGAAAGAAGC+TGG 0.569461 7_3:+768606 Msa1087980:three_prime_UTR
GTTCATTGAAAAGATGCCAA+TGG 0.571820 7_3:+768302 Msa1087980:three_prime_UTR
GAGAGACTTGCTATTGCTAA+GGG 0.576212 7_3:+768705 Msa1087980:three_prime_UTR
GTTGTGAGTGTTTCAGGCGG+CGG 0.577914 7_3:-764922 None:intergenic
TGTTCACCAATAATCCCTGC+AGG 0.578395 7_3:-768889 None:intergenic
ATACGGCTAAGATTATTGTC+TGG 0.578637 7_3:-768513 None:intergenic
AATGCAACATAAAGTTGGGG+TGG 0.580999 7_3:+767192 Msa1087980:CDS
ACACTTTGAATCCATGAGTA+GGG 0.586167 7_3:+768194 Msa1087980:three_prime_UTR
GACTGAGCGCAAATTGATTG+AGG 0.588259 7_3:+767717 Msa1087980:CDS
ATCCCACCTTTCAGCAGCGG+TGG 0.588397 7_3:-766936 None:intergenic
AAAGGCTGAGTTTCTTGAAG+AGG 0.590362 7_3:+767564 Msa1087980:CDS
GGTGGGTGTTGATAATTCAA+GGG 0.594015 7_3:+767210 Msa1087980:CDS
CGTATCCATGAATATCGAGC+AGG 0.595049 7_3:+768531 Msa1087980:three_prime_UTR
GTGGGTGTTGATAATTCAAG+GGG 0.601550 7_3:+767211 Msa1087980:CDS
GGTGTATCCCGACTCCACAC+TGG 0.602240 7_3:+770857 Msa1087980:intron
ATGCAACATAAAGTTGGGGT+GGG 0.604200 7_3:+767193 Msa1087980:CDS
TGATGGCCAAATGTTTATTG+GGG 0.605126 7_3:+768125 Msa1087980:three_prime_UTR
ACGCACGTGCGAACTGTGAG+AGG 0.605569 7_3:-767625 None:intergenic
CTTAGGCCTATAGAGTATCA+GGG 0.610390 7_3:+767325 Msa1087980:CDS
GCGTTGAGAAAGAGAGTGTG+TGG 0.610998 7_3:-765037 None:intergenic
AAACAACGATCCAAATCCAC+AGG 0.611637 7_3:-767817 None:intergenic
CTTTGATACAATTTGCAACG+TGG 0.616574 7_3:-766889 None:intergenic
TATGCTGGGAGATATTGTTG+AGG 0.616693 7_3:+768164 Msa1087980:three_prime_UTR
TCATGGAAACACTGAGCTGG+GGG 0.618691 7_3:+768371 Msa1087980:three_prime_UTR
ATAATCCCACCTTTCAGCAG+CGG 0.619153 7_3:-766939 None:intergenic
TGCGATTAATGCAACAATGT+GGG 0.619619 7_3:+767839 Msa1087980:CDS
TAGAGTATCAGGGACATCAT+GGG 0.620130 7_3:+767335 Msa1087980:CDS
GCCAATGGAACCAAGTGTAG+AGG 0.624170 7_3:+768317 Msa1087980:three_prime_UTR
TTCATGGAAACACTGAGCTG+GGG 0.626728 7_3:+768370 Msa1087980:three_prime_UTR
AGAAAGGTTTCATATTCCTG+TGG 0.627539 7_3:+767801 Msa1087980:CDS
ACTTGATAGTTCTTGCATGG+AGG 0.629311 7_3:+767741 Msa1087980:CDS
TACACTTTGAATCCATGAGT+AGG 0.630872 7_3:+768193 Msa1087980:three_prime_UTR
TTTAAATCTCAGCACCAACA+AGG 0.634583 7_3:-771138 None:intergenic
AGGAGTGGACTAAAACCTGA+TGG 0.643034 7_3:+768108 Msa1087980:three_prime_UTR
CAAAATGCAACATAAAGTTG+GGG 0.646833 7_3:+767189 Msa1087980:CDS
GGATCTGGTCAAACTGCACG+TGG 0.655131 7_3:+767070 Msa1087980:CDS
CTAGCTAGGACTATGACACA+AGG 0.656229 7_3:-771060 None:intergenic
TTATTGGTGAACATTAACCT+AGG 0.657442 7_3:+768899 Msa1087980:three_prime_UTR
TATGACAATCACCACAAACA+CGG 0.659449 7_3:-768776 None:intergenic
ATTAATACAACTGTGTGGAA+AGG 0.670134 7_3:+767546 Msa1087980:CDS
AAATGGGCTATGCTCCTGCA+GGG 0.683989 7_3:+768875 Msa1087980:three_prime_UTR
TTGCGATTAATGCAACAATG+TGG 0.685589 7_3:+767838 Msa1087980:CDS
ATAACTTCAGCACAATCATG+AGG 0.692447 7_3:-771199 None:intergenic
CCACACTGGATTGAATAACG+CGG 0.694037 7_3:+770871 Msa1087980:three_prime_UTR
TCTGGTCAAACTGCACGTGG+AGG 0.698276 7_3:+767073 Msa1087980:CDS
TTGCGATTAATACAACTGTG+TGG 0.700301 7_3:+767541 Msa1087980:CDS
CCGCGTTATTCAATCCAGTG+TGG 0.701444 7_3:-770871 None:intergenic
ATTAATGCAACAATGTGGGA+AGG 0.701679 7_3:+767843 Msa1087980:CDS
GGGAACCTTACTCAAAACAG+TGG 0.715780 7_3:+767355 Msa1087980:CDS
TAGGTTGTGAGTGTTTCAGG+CGG 0.718225 7_3:-764925 None:intergenic
GCATAATGGAAGTGTCAATG+GGG 0.743759 7_3:+767147 Msa1087980:CDS
CAATAGCAAGTCTCTCACTG+TGG 0.765936 7_3:-768698 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTAAATTATTAATGTTT+AGG + chr7_3:766026-766045 Msa1087980:intron 10.0%
!! AACAAAAATCAATAATATTA+TGG - chr7_3:766437-766456 None:intergenic 10.0%
!! ATTTATTTACTGAATTTAAA+AGG + chr7_3:768088-768107 Msa1087980:three_prime_UTR 10.0%
!! ACAAAAAATTATATAGTAAA+GGG - chr7_3:770464-770483 None:intergenic 10.0%
!! AACAAAAAATTATATAGTAA+AGG - chr7_3:770465-770484 None:intergenic 10.0%
!!! TTTTCAATTTTGTTGTTATT+AGG + chr7_3:765151-765170 Msa1087980:intron 15.0%
!!! TTGTGTTTCTTTTTATTTTT+TGG + chr7_3:765421-765440 Msa1087980:intron 15.0%
!!! TGTGTTTCTTTTTATTTTTT+GGG + chr7_3:765422-765441 Msa1087980:intron 15.0%
!! AATACATTGTTAATCAAATT+TGG - chr7_3:765822-765841 None:intergenic 15.0%
!!! TTAACTTATTTTTTGTATCA+TGG + chr7_3:766123-766142 Msa1087980:intron 15.0%
!!! TAACTTATTTTTTGTATCAT+GGG + chr7_3:766124-766143 Msa1087980:intron 15.0%
!!! AAATCAATAATATTTGGTTT+TGG - chr7_3:766378-766397 None:intergenic 15.0%
!!! AAACCAAATATTATTGATTT+TGG + chr7_3:766378-766397 Msa1087980:intron 15.0%
!! AAACCAAAATCAATAATATT+TGG - chr7_3:766384-766403 None:intergenic 15.0%
!!! AAATATTATTGATTTTGGTT+TGG + chr7_3:766383-766402 Msa1087980:intron 15.0%
!! AAATCAATAATATTATGGTA+CGG - chr7_3:766432-766451 None:intergenic 15.0%
!! TTGTTAAGTTTATCTTTATA+TGG - chr7_3:767424-767443 None:intergenic 15.0%
!!! AAGATATGTTTTTTTACTTT+AGG + chr7_3:769092-769111 Msa1087980:intron 15.0%
!! GAAAATAATGACTTATATTA+TGG + chr7_3:769323-769342 Msa1087980:intron 15.0%
!! CAAAAAATTATATAGTAAAG+GGG - chr7_3:770463-770482 None:intergenic 15.0%
!! AAAGATTAAAAACAATATAC+AGG + chr7_3:771158-771177 Msa1087980:three_prime_UTR 15.0%
!!! AATTAATACGCTCATTTTAA+GGG - chr7_3:765300-765319 None:intergenic 20.0%
!! ATTGAAAACAATGATCAAAA+GGG - chr7_3:765333-765352 None:intergenic 20.0%
!! AATTGAAAACAATGATCAAA+AGG - chr7_3:765334-765353 None:intergenic 20.0%
!! ATATTTATCCATAGCTTAAA+GGG - chr7_3:765513-765532 None:intergenic 20.0%
!! AATATTTATCCATAGCTTAA+AGG - chr7_3:765514-765533 None:intergenic 20.0%
!! ATGATTCATGAAATATTGAA+CGG + chr7_3:765555-765574 Msa1087980:intron 20.0%
!!! AAATTTTGTGATTCATTAAG+TGG + chr7_3:765688-765707 Msa1087980:intron 20.0%
!!! TGTTGGAATTCTATAAATTT+TGG - chr7_3:765857-765876 None:intergenic 20.0%
!! TAATAATTTAACATCAGAAG+TGG - chr7_3:766020-766039 None:intergenic 20.0%
!! TTGATTACATGATAAACATA+TGG - chr7_3:766076-766095 None:intergenic 20.0%
!!! AATAATATTTGGTTTTGGTT+TGG - chr7_3:766373-766392 None:intergenic 20.0%
!! AATCAATAATATTATGGTAC+GGG - chr7_3:766431-766450 None:intergenic 20.0%
!!! TTTTTGTTATGTCATGAAAT+TGG + chr7_3:766449-766468 Msa1087980:intron 20.0%
!! TTTGAACAAAGTCATAAATT+TGG + chr7_3:766474-766493 Msa1087980:intron 20.0%
!! TTGAACAAAGTCATAAATTT+GGG + chr7_3:766475-766494 Msa1087980:intron 20.0%
!! AATTTATCTTGATCAAATAG+CGG + chr7_3:766590-766609 Msa1087980:intron 20.0%
!! TATGATGTGATTATCAAAAT+GGG + chr7_3:766663-766682 Msa1087980:intron 20.0%
!! AAAATCAAGATAAGTTTAGT+TGG - chr7_3:768955-768974 None:intergenic 20.0%
!!! ATTTTAGTCAAAGACAATTA+TGG - chr7_3:768978-768997 None:intergenic 20.0%
!! TTAGTTAGAGTTTATGATAA+GGG + chr7_3:769285-769304 Msa1087980:intron 20.0%
!! AGCTAAGTTAAATTTCATTA+TGG + chr7_3:770292-770311 Msa1087980:intron 20.0%
!! ATATTCATAATTTGAATCTC+AGG + chr7_3:770591-770610 Msa1087980:intron 20.0%
!!! AAAACTTTTTACTAGATTTG+TGG + chr7_3:770711-770730 Msa1087980:intron 20.0%
! AAGAAAATTGATGAGATGTT+AGG - chr7_3:764947-764966 None:intergenic 25.0%
!! TTTAGTCACATTTGAGATTA+GGG - chr7_3:764997-765016 None:intergenic 25.0%
!! ATTAATACGCTCATTTTAAG+GGG - chr7_3:765299-765318 None:intergenic 25.0%
!! CAATTAATACGCTCATTTTA+AGG - chr7_3:765301-765320 None:intergenic 25.0%
!!! TTCTTTTTATTTTTTGGGTG+TGG + chr7_3:765427-765446 Msa1087980:intron 25.0%
!!! TCTTTTTATTTTTTGGGTGT+GGG + chr7_3:765428-765447 Msa1087980:intron 25.0%
!!! ATAGCTTTATCTATAGATGT+TGG + chr7_3:765604-765623 Msa1087980:intron 25.0%
! TCATGAAAATCAATATGATG+TGG + chr7_3:765784-765803 Msa1087980:intron 25.0%
! CAAAAAATAAGTTAACGTGA+AGG - chr7_3:766118-766137 None:intergenic 25.0%
!! CTTTTGTACTAAATTTCTTC+CGG - chr7_3:766210-766229 None:intergenic 25.0%
!! ATGATTAGTGTCACTATTAT+CGG + chr7_3:766234-766253 Msa1087980:intron 25.0%
!!! TGGAAAACTAGTTTTAAAAC+CGG + chr7_3:766298-766317 Msa1087980:intron 25.0%
! TACTTCAAAAAGAATCAAAC+CGG - chr7_3:766320-766339 None:intergenic 25.0%
! TAGATATATGTTTAGAGAAG+TGG + chr7_3:766338-766357 Msa1087980:intron 25.0%
! TGAACAAAGTCATAAATTTG+GGG + chr7_3:766476-766495 Msa1087980:intron 25.0%
! CTATGATGTGATTATCAAAA+TGG + chr7_3:766662-766681 Msa1087980:intron 25.0%
! CATAACTGAATGAACAAATA+AGG - chr7_3:766713-766732 None:intergenic 25.0%
! AAGAGAATTAACAGTAACTA+AGG - chr7_3:766840-766859 None:intergenic 25.0%
! TTATCAAGCTAATGATTCTT+CGG + chr7_3:766958-766977 Msa1087980:CDS 25.0%
! ATTACTTTGAACTACATTCT+GGG - chr7_3:767119-767138 None:intergenic 25.0%
! AATTACTTTGAACTACATTC+TGG - chr7_3:767120-767139 None:intergenic 25.0%
! GAATGTAGTTCAAAGTAATT+TGG + chr7_3:767120-767139 Msa1087980:CDS 25.0%
! TTCAAAATGCAACATAAAGT+TGG + chr7_3:767187-767206 Msa1087980:CDS 25.0%
! TCAAAATGCAACATAAAGTT+GGG + chr7_3:767188-767207 Msa1087980:CDS 25.0%
! CTAAGTAAACTATGTGAATT+GGG - chr7_3:767310-767329 None:intergenic 25.0%
!!! GAGTTTTGAGTATTCATATT+TGG - chr7_3:767397-767416 None:intergenic 25.0%
!! TTAGAGATGTATTTTCAATG+TGG + chr7_3:767655-767674 Msa1087980:CDS 25.0%
! TTTACTGAATTTAAAAGGAG+TGG + chr7_3:768093-768112 Msa1087980:three_prime_UTR 25.0%
! TTGAATGAGAAATCAAAAGT+TGG + chr7_3:768435-768454 Msa1087980:three_prime_UTR 25.0%
!!! GTATAGATCATGTTATTTTC+TGG - chr7_3:768570-768589 None:intergenic 25.0%
!!! AAGATTATTTCTGATCTTGT+GGG + chr7_3:768807-768826 Msa1087980:three_prime_UTR 25.0%
!!! AGGTTCCATCATTTTAAAAA+TGG + chr7_3:768858-768877 Msa1087980:three_prime_UTR 25.0%
!!! GGTTCCATCATTTTAAAAAT+GGG + chr7_3:768859-768878 Msa1087980:three_prime_UTR 25.0%
! ATATATTTCACTATCAAAGG+TGG - chr7_3:768931-768950 None:intergenic 25.0%
! GGAATATATTTCACTATCAA+AGG - chr7_3:768934-768953 None:intergenic 25.0%
!! ACTTTAGGTAAAATGCTTTT+AGG + chr7_3:769107-769126 Msa1087980:intron 25.0%
!!! ATGTTGTTGCTTTATAAGAT+TGG + chr7_3:769188-769207 Msa1087980:intron 25.0%
!! TTTATAAGATTGGTTGTGAT+GGG + chr7_3:769198-769217 Msa1087980:intron 25.0%
!!! ATTTTGATTTTCACTCTCAT+GGG + chr7_3:769221-769240 Msa1087980:intron 25.0%
!! ATGGGTTAAATTTATGGATT+TGG + chr7_3:769239-769258 Msa1087980:intron 25.0%
! TGGGTTAAATTTATGGATTT+GGG + chr7_3:769240-769259 Msa1087980:intron 25.0%
! GTTAGTTAGAGTTTATGATA+AGG + chr7_3:769284-769303 Msa1087980:intron 25.0%
! TCTAATTATAATCACATGTG+TGG + chr7_3:769398-769417 Msa1087980:intron 25.0%
! CTAATTATAATCACATGTGT+GGG + chr7_3:769399-769418 Msa1087980:intron 25.0%
! TGTTATAAACATACTCCTTT+AGG + chr7_3:769630-769649 Msa1087980:intron 25.0%
!! TGTAAATGTTAGTTTCCTAA+AGG - chr7_3:769648-769667 None:intergenic 25.0%
! TCATTAATCTAATATACGGT+TGG - chr7_3:770070-770089 None:intergenic 25.0%
! CGCTTCATTAATCTAATATA+CGG - chr7_3:770074-770093 None:intergenic 25.0%
! GAAAGTAAGTATAGAGATAA+TGG + chr7_3:770210-770229 Msa1087980:intron 25.0%
! AAAATTATATAGTAAAGGGG+CGG - chr7_3:770460-770479 None:intergenic 25.0%
!! TGTCAAAGAGTTTGTTTAAT+TGG + chr7_3:770530-770549 Msa1087980:intron 25.0%
!! ATCTAAAGCAAAAAAGAGTA+CGG - chr7_3:770663-770682 None:intergenic 25.0%
! TATAGTAGTTCACATTAACA+TGG - chr7_3:770770-770789 None:intergenic 25.0%
! AGATATATGAAAACAGGTTT+GGG - chr7_3:770913-770932 None:intergenic 25.0%
! GTTTAGTCACATTTGAGATT+AGG - chr7_3:764998-765017 None:intergenic 30.0%
AAATCATACAGAGAGAGAAA+TGG - chr7_3:765074-765093 None:intergenic 30.0%
!!! TTCTGGTTATTTTTCTGCAA+TGG + chr7_3:765232-765251 Msa1087980:intron 30.0%
! TTTGCTTATGTTTTGTCATC+TGG + chr7_3:765371-765390 Msa1087980:intron 30.0%
! TTGCTTATGTTTTGTCATCT+GGG + chr7_3:765372-765391 Msa1087980:intron 30.0%
ACGGTTCAAATTTAACATCA+TGG + chr7_3:765574-765593 Msa1087980:intron 30.0%
TGACTAGATTTAGTGATAGT+AGG + chr7_3:765658-765677 Msa1087980:intron 30.0%
TGTGATTCATTAAGTGGTAT+TGG + chr7_3:765694-765713 Msa1087980:intron 30.0%
!! ATTCATTAAGTGGTATTGGT+TGG + chr7_3:765698-765717 Msa1087980:intron 30.0%
TAAACATTTCAGATGCTTTG+TGG + chr7_3:765953-765972 Msa1087980:intron 30.0%
ACACCATGAAAGATATTTCA+AGG - chr7_3:766174-766193 None:intergenic 30.0%
TATTATCGGTGTACAATGAT+TGG + chr7_3:766248-766267 Msa1087980:intron 30.0%
AATAATATTATGGTACGGGT+AGG - chr7_3:766427-766446 None:intergenic 30.0%
!!! GGAATGTAATGTTTTGATTC+AGG + chr7_3:766497-766516 Msa1087980:intron 30.0%
!!! AATGTTTTGATTCAGGCTTA+TGG + chr7_3:766504-766523 Msa1087980:intron 30.0%
ATTCAGGCTTATGGATATTT+GGG + chr7_3:766513-766532 Msa1087980:intron 30.0%
TAGAAACTTGGAATAATCTG+AGG - chr7_3:766795-766814 None:intergenic 30.0%
AGAAGACATCATTAGAAACT+TGG - chr7_3:766807-766826 None:intergenic 30.0%
ACGTTGCAAATTGTATCAAA+GGG + chr7_3:766891-766910 Msa1087980:CDS 30.0%
TTTCATCAGCAAAATGCAAA+TGG + chr7_3:767004-767023 Msa1087980:CDS 30.0%
TCTGAACTAGCATGATTATT+CGG - chr7_3:767037-767056 None:intergenic 30.0%
AGTTCAGAGCGAATTTATTA+TGG + chr7_3:767049-767068 Msa1087980:CDS 30.0%
CAAAATGCAACATAAAGTTG+GGG + chr7_3:767189-767208 Msa1087980:CDS 30.0%
CCTAAGTAAACTATGTGAAT+TGG - chr7_3:767311-767330 None:intergenic 30.0%
CCAATTCACATAGTTTACTT+AGG + chr7_3:767308-767327 Msa1087980:CDS 30.0%
! CAAACTAGATGAATTTTGCA+AGG + chr7_3:767441-767460 Msa1087980:CDS 30.0%
ATTAATACAACTGTGTGGAA+AGG + chr7_3:767546-767565 Msa1087980:CDS 30.0%
!! TTGTTTTGCAAGTGTTAGAA+AGG + chr7_3:767785-767804 Msa1087980:CDS 30.0%
! TTGGAGATGTATTTTCAATG+TGG + chr7_3:767952-767971 Msa1087980:three_prime_UTR 30.0%
CAAAAACCCCAATAAACATT+TGG - chr7_3:768134-768153 None:intergenic 30.0%
! CAAATGTTTATTGGGGTTTT+TGG + chr7_3:768132-768151 Msa1087980:three_prime_UTR 30.0%
GTAAGTTTAGTAGACATGAT+TGG + chr7_3:768249-768268 Msa1087980:three_prime_UTR 30.0%
! TAGACATGATTGGTAGTATT+GGG + chr7_3:768259-768278 Msa1087980:three_prime_UTR 30.0%
ATGAATAGTTGTAGAGTTCA+TGG + chr7_3:768354-768373 Msa1087980:three_prime_UTR 30.0%
GAGATTCTTAATTACTCTGA+TGG - chr7_3:768757-768776 None:intergenic 30.0%
!! GAAGATTATTTCTGATCTTG+TGG + chr7_3:768806-768825 Msa1087980:three_prime_UTR 30.0%
TTATTGGTGAACATTAACCT+AGG + chr7_3:768899-768918 Msa1087980:three_prime_UTR 30.0%
GCTATATTAGCAGCAAAAAT+TGG - chr7_3:769164-769183 None:intergenic 30.0%
! CTTTATAAGATTGGTTGTGA+TGG + chr7_3:769197-769216 Msa1087980:intron 30.0%
!!! GATTTTGATTTTCACTCTCA+TGG + chr7_3:769220-769239 Msa1087980:intron 30.0%
! ACTCTCATGGGTTAAATTTA+TGG + chr7_3:769233-769252 Msa1087980:intron 30.0%
!! GCTTATTAAGATTTAGCTTG+AGG - chr7_3:769602-769621 None:intergenic 30.0%
! CAAGAATCCTTGAGAATTTT+GGG + chr7_3:769714-769733 Msa1087980:intron 30.0%
TCAAAGATAAGATATCAGAG+TGG - chr7_3:769741-769760 None:intergenic 30.0%
TCTTATCTTTGACATTACCA+TGG + chr7_3:769749-769768 Msa1087980:intron 30.0%
CTTATCTTTGACATTACCAT+GGG + chr7_3:769750-769769 Msa1087980:intron 30.0%
!! CCTTTGTTTGGCAAATTTTT+GGG - chr7_3:769979-769998 None:intergenic 30.0%
!!! CACTCTTTTTTCCAAAGAAT+AGG + chr7_3:770351-770370 Msa1087980:intron 30.0%
! AGAGTTTGTTTAATTGGCAA+CGG + chr7_3:770536-770555 Msa1087980:intron 30.0%
!!! ACGGGTTTTTGAAATTCTTT+CGG - chr7_3:770644-770663 None:intergenic 30.0%
! TCTAAAGCAAAAAAGAGTAC+GGG - chr7_3:770662-770681 None:intergenic 30.0%
!!! CTCTTTTTTGCTTTAGATGA+AGG + chr7_3:770665-770684 Msa1087980:intron 30.0%
! TCAAAACAATCTTGTTATGC+AGG + chr7_3:770836-770855 Msa1087980:intron 30.0%
GAGATATATGAAAACAGGTT+TGG - chr7_3:770914-770933 None:intergenic 30.0%
! ACCTGTTTTCATATATCTCA+TGG + chr7_3:770915-770934 Msa1087980:three_prime_UTR 30.0%
ACCATGAGATATATGAAAAC+AGG - chr7_3:770919-770938 None:intergenic 30.0%
TGGCTAGTGATAGAGAATTT+GGG - chr7_3:765020-765039 None:intergenic 35.0%
AAGAAGATGAATCATGAACC+TGG - chr7_3:765099-765118 None:intergenic 35.0%
TGCAAAGAGTTTCGTTAATC+TGG - chr7_3:765201-765220 None:intergenic 35.0%
AGATTAACGAAACTCTTTGC+AGG + chr7_3:765200-765219 Msa1087980:five_prime_UTR 35.0%
! TTTGCAGGTTTGTGATTTTC+TGG + chr7_3:765215-765234 Msa1087980:intron 35.0%
TAGATTTAGTGATAGTAGGC+TGG + chr7_3:765662-765681 Msa1087980:intron 35.0%
AGAATGAACGTTTGCTTTGT+TGG - chr7_3:765874-765893 None:intergenic 35.0%
AATAAGTTAACGTGAAGGCA+GGG - chr7_3:766113-766132 None:intergenic 35.0%
AAATAAGTTAACGTGAAGGC+AGG - chr7_3:766114-766133 None:intergenic 35.0%
ACGCCTTGAAATATCTTTCA+TGG + chr7_3:766168-766187 Msa1087980:intron 35.0%
TTGCTGTGACTTGAAACTTA+TGG + chr7_3:766278-766297 Msa1087980:intron 35.0%
ATGTTTAGAGAAGTGGTTTC+AGG + chr7_3:766345-766364 Msa1087980:intron 35.0%
GATTCAGGCTTATGGATATT+TGG + chr7_3:766512-766531 Msa1087980:intron 35.0%
AACTTGGAATAATCTGAGGA+AGG - chr7_3:766791-766810 None:intergenic 35.0%
CTTTGATACAATTTGCAACG+TGG - chr7_3:766892-766911 None:intergenic 35.0%
CACGTTGCAAATTGTATCAA+AGG + chr7_3:766890-766909 Msa1087980:CDS 35.0%
GAGCGAATTTATTATGGATC+TGG + chr7_3:767055-767074 Msa1087980:CDS 35.0%
AGTAATTTGGCAGAGCATAA+TGG + chr7_3:767133-767152 Msa1087980:CDS 35.0%
!! AGCATAATGGAAGTGTCAAT+GGG + chr7_3:767146-767165 Msa1087980:CDS 35.0%
! TTGATAATTCAAGGGGCTTT+GGG + chr7_3:767218-767237 Msa1087980:CDS 35.0%
TGTCTCTCAAAAGAACCATA+AGG - chr7_3:767250-767269 None:intergenic 35.0%
!! GTTCTTTTGAGAGACATGAT+TGG + chr7_3:767254-767273 Msa1087980:CDS 35.0%
! ACTAGATGAATTTTGCAAGG+AGG + chr7_3:767444-767463 Msa1087980:CDS 35.0%
! CTAGATGAATTTTGCAAGGA+GGG + chr7_3:767445-767464 Msa1087980:CDS 35.0%
AGAAAAGCTTCATGCTTATG+TGG + chr7_3:767504-767523 Msa1087980:CDS 35.0%
TTGCGATTAATACAACTGTG+TGG + chr7_3:767541-767560 Msa1087980:CDS 35.0%
AGAAAGGTTTCATATTCCTG+TGG + chr7_3:767801-767820 Msa1087980:CDS 35.0%
GTTTCATATTCCTGTGGATT+TGG + chr7_3:767807-767826 Msa1087980:CDS 35.0%
TTGCGATTAATGCAACAATG+TGG + chr7_3:767838-767857 Msa1087980:CDS 35.0%
TGCGATTAATGCAACAATGT+GGG + chr7_3:767839-767858 Msa1087980:CDS 35.0%
ATTAATGCAACAATGTGGGA+AGG + chr7_3:767843-767862 Msa1087980:CDS 35.0%
CTGATGGCCAAATGTTTATT+GGG + chr7_3:768124-768143 Msa1087980:three_prime_UTR 35.0%
TGATGGCCAAATGTTTATTG+GGG + chr7_3:768125-768144 Msa1087980:three_prime_UTR 35.0%
TACACTTTGAATCCATGAGT+AGG + chr7_3:768193-768212 Msa1087980:three_prime_UTR 35.0%
ACACTTTGAATCCATGAGTA+GGG + chr7_3:768194-768213 Msa1087980:three_prime_UTR 35.0%
CTATGACATTGTACCAACTA+TGG + chr7_3:768218-768237 Msa1087980:three_prime_UTR 35.0%
CTTACATAATGTGCCATAGT+TGG - chr7_3:768234-768253 None:intergenic 35.0%
! GTAGACATGATTGGTAGTAT+TGG + chr7_3:768258-768277 Msa1087980:three_prime_UTR 35.0%
! CATCTTTTCAATGAACTCCA+AGG - chr7_3:768298-768317 None:intergenic 35.0%
GTTCATTGAAAAGATGCCAA+TGG + chr7_3:768302-768321 Msa1087980:three_prime_UTR 35.0%
GATTTCTCATTCAAACGAGA+TGG - chr7_3:768429-768448 None:intergenic 35.0%
ATACGGCTAAGATTATTGTC+TGG - chr7_3:768516-768535 None:intergenic 35.0%
ATACTTTGCTTAGACGTTTG+AGG + chr7_3:768586-768605 Msa1087980:three_prime_UTR 35.0%
TACTTTGCTTAGACGTTTGA+GGG + chr7_3:768587-768606 Msa1087980:three_prime_UTR 35.0%
ATTAAGAATCTCCGTGTTTG+TGG + chr7_3:768765-768784 Msa1087980:three_prime_UTR 35.0%
TATGACAATCACCACAAACA+CGG - chr7_3:768779-768798 None:intergenic 35.0%
GTTAGAGTTTATGATAAGGG+AGG + chr7_3:769288-769307 Msa1087980:intron 35.0%
ATTATAATCACATGTGTGGG+TGG + chr7_3:769402-769421 Msa1087980:intron 35.0%
TTATAATCACATGTGTGGGT+GGG + chr7_3:769403-769422 Msa1087980:intron 35.0%
CCAAAATTCTCAAGGATTCT+TGG - chr7_3:769716-769735 None:intergenic 35.0%
! CCAAGAATCCTTGAGAATTT+TGG + chr7_3:769713-769732 Msa1087980:intron 35.0%
!! TTGATTTGTCTGAAACTGTG+AGG + chr7_3:769807-769826 Msa1087980:intron 35.0%
GTCTTAAGGTCAAGTTACAT+TGG + chr7_3:769849-769868 Msa1087980:intron 35.0%
TAAGAGCTGTTTAAGCAAGA+TGG + chr7_3:769941-769960 Msa1087980:intron 35.0%
CCCAAAAATTTGCCAAACAA+AGG + chr7_3:769976-769995 Msa1087980:intron 35.0%
!! GCCTTTGTTTGGCAAATTTT+TGG - chr7_3:769980-769999 None:intergenic 35.0%
TCTTCATATCTGCCTTTGTT+TGG - chr7_3:769991-770010 None:intergenic 35.0%
AAACAAAGGCAGATATGAAG+AGG + chr7_3:769990-770009 Msa1087980:intron 35.0%
AGATATGAAGAGGTGAAACT+TGG + chr7_3:770000-770019 Msa1087980:intron 35.0%
TTAGATTAATGAAGCGAAGC+TGG + chr7_3:770078-770097 Msa1087980:intron 35.0%
AAATCCGTTGGAAAATCTTC+CGG + chr7_3:770119-770138 Msa1087980:intron 35.0%
! ATAACCGGAAGATTTTCCAA+CGG - chr7_3:770126-770145 None:intergenic 35.0%
AATCTTCCGGTTATAATAGC+AGG + chr7_3:770132-770151 Msa1087980:intron 35.0%
ATAATGTAGTTCCAGACTTC+TGG + chr7_3:770240-770259 Msa1087980:intron 35.0%
ATCAGCAGAACCATATAAAG+CGG + chr7_3:770268-770287 Msa1087980:intron 35.0%
AACTTAGCTTCCGCTTTATA+TGG - chr7_3:770281-770300 None:intergenic 35.0%
TTGGAAAAAAGAGTGAACTC+CGG - chr7_3:770346-770365 None:intergenic 35.0%
CAGGACAATATCCTATTCTT+TGG - chr7_3:770365-770384 None:intergenic 35.0%
GTGTCTTTCTCTGTTATATC+AGG - chr7_3:770384-770403 None:intergenic 35.0%
ATAACAGAGAAAGACACAGA+TGG + chr7_3:770387-770406 Msa1087980:intron 35.0%
! GAGTTTGTTTAATTGGCAAC+GGG + chr7_3:770537-770556 Msa1087980:intron 35.0%
! AGTTTGTTTAATTGGCAACG+GGG + chr7_3:770538-770557 Msa1087980:intron 35.0%
!!! CGGGTTTTTGAAATTCTTTC+GGG - chr7_3:770643-770662 None:intergenic 35.0%
AAGGACAGAGACTTATTTGA+GGG + chr7_3:770684-770703 Msa1087980:intron 35.0%
!!! TGCTGTTTTCACGTCTTATT+TGG + chr7_3:770791-770810 Msa1087980:intron 35.0%
!!! ACGTCTTATTTGGCATTTTG+AGG + chr7_3:770801-770820 Msa1087980:intron 35.0%
CAATATACCATATGCTAGCT+AGG - chr7_3:771077-771096 None:intergenic 35.0%
TGTAAAACAACACACCTTGT+TGG + chr7_3:771124-771143 Msa1087980:three_prime_UTR 35.0%
TTTAAATCTCAGCACCAACA+AGG - chr7_3:771141-771160 None:intergenic 35.0%
! TGTTAGGTTGTGAGTGTTTC+AGG - chr7_3:764931-764950 None:intergenic 40.0%
GTGGCTAGTGATAGAGAATT+TGG - chr7_3:765021-765040 None:intergenic 40.0%
TCTCTCTGTATGATTTCTCC+AGG + chr7_3:765078-765097 Msa1087980:intron 40.0%
TCCTGCTACATGAATCATGA+CGG - chr7_3:765469-765488 None:intergenic 40.0%
AGAATCGACCCTTTAAGCTA+TGG + chr7_3:765502-765521 Msa1087980:intron 40.0%
ATGCATCACTGAAGTAACAG+TGG - chr7_3:765733-765752 None:intergenic 40.0%
TAGTAGTCAATCCCAGAATG+CGG - chr7_3:766645-766664 None:intergenic 40.0%
ATTACCAGCAAAATCGTCCT+AGG + chr7_3:766981-767000 Msa1087980:CDS 40.0%
! GCATTTTGCTGATGAAACCT+AGG - chr7_3:767001-767020 None:intergenic 40.0%
!! GAGCATAATGGAAGTGTCAA+TGG + chr7_3:767145-767164 Msa1087980:CDS 40.0%
!! GCATAATGGAAGTGTCAATG+GGG + chr7_3:767147-767166 Msa1087980:CDS 40.0%
AATGCAACATAAAGTTGGGG+TGG + chr7_3:767192-767211 Msa1087980:CDS 40.0%
ATGCAACATAAAGTTGGGGT+GGG + chr7_3:767193-767212 Msa1087980:CDS 40.0%
!! GGTGGGTGTTGATAATTCAA+GGG + chr7_3:767210-767229 Msa1087980:CDS 40.0%
!! GTGGGTGTTGATAATTCAAG+GGG + chr7_3:767211-767230 Msa1087980:CDS 40.0%
!! GTTGATAATTCAAGGGGCTT+TGG + chr7_3:767217-767236 Msa1087980:CDS 40.0%
CATGATTGGAGACTAGAATC+CGG + chr7_3:767268-767287 Msa1087980:CDS 40.0%
! ACTTAGGCCTATAGAGTATC+AGG + chr7_3:767324-767343 Msa1087980:CDS 40.0%
! CTTAGGCCTATAGAGTATCA+GGG + chr7_3:767325-767344 Msa1087980:CDS 40.0%
TGATGTCCCTGATACTCTAT+AGG - chr7_3:767334-767353 None:intergenic 40.0%
! ATAGAGTATCAGGGACATCA+TGG + chr7_3:767334-767353 Msa1087980:CDS 40.0%
! TAGAGTATCAGGGACATCAT+GGG + chr7_3:767335-767354 Msa1087980:CDS 40.0%
!! AACGACCACTGTTTTGAGTA+AGG - chr7_3:767363-767382 None:intergenic 40.0%
AAAGGCTGAGTTTCTTGAAG+AGG + chr7_3:767564-767583 Msa1087980:CDS 40.0%
TAGATGTAGTCAACGTGTTC+AGG + chr7_3:767683-767702 Msa1087980:CDS 40.0%
! GGAACTTGATAGTTCTTGCA+TGG + chr7_3:767738-767757 Msa1087980:CDS 40.0%
! ACTTGATAGTTCTTGCATGG+AGG + chr7_3:767741-767760 Msa1087980:CDS 40.0%
! CTTGATAGTTCTTGCATGGA+GGG + chr7_3:767742-767761 Msa1087980:CDS 40.0%
AAACAACGATCCAAATCCAC+AGG - chr7_3:767820-767839 None:intergenic 40.0%
!! TTGCATGTGCTGACTTTAAG+AGG - chr7_3:767925-767944 None:intergenic 40.0%
CTTAAAGTCAGCACATGCAA+TGG + chr7_3:767925-767944 Msa1087980:three_prime_UTR 40.0%
CAGCACATGCAATGGAATAT+TGG + chr7_3:767933-767952 Msa1087980:three_prime_UTR 40.0%
ATCTTCTGCAAACCCATTCT+TGG - chr7_3:768061-768080 None:intergenic 40.0%
CCAATAAACATTTGGCCATC+AGG - chr7_3:768126-768145 None:intergenic 40.0%
CCTGATGGCCAAATGTTTAT+TGG + chr7_3:768123-768142 Msa1087980:three_prime_UTR 40.0%
!! TTTTGGTGCATGTAGTATGC+TGG + chr7_3:768149-768168 Msa1087980:three_prime_UTR 40.0%
! TTTGGTGCATGTAGTATGCT+GGG + chr7_3:768150-768169 Msa1087980:three_prime_UTR 40.0%
TATGCTGGGAGATATTGTTG+AGG + chr7_3:768164-768183 Msa1087980:three_prime_UTR 40.0%
ATGCTGGGAGATATTGTTGA+GGG + chr7_3:768165-768184 Msa1087980:three_prime_UTR 40.0%
AATGTCATAGTCCCTACTCA+TGG - chr7_3:768208-768227 None:intergenic 40.0%
CTGCTCGATATTCATGGATA+CGG - chr7_3:768533-768552 None:intergenic 40.0%
TATCTCCTGCTCGATATTCA+TGG - chr7_3:768539-768558 None:intergenic 40.0%
GATAAAGAAGATGCTCTCCT+TGG + chr7_3:768675-768694 Msa1087980:three_prime_UTR 40.0%
!! TGAGAGACTTGCTATTGCTA+AGG + chr7_3:768704-768723 Msa1087980:three_prime_UTR 40.0%
!! GAGAGACTTGCTATTGCTAA+GGG + chr7_3:768705-768724 Msa1087980:three_prime_UTR 40.0%
TCATCATCCGAGATGCTAAA+AGG + chr7_3:768838-768857 Msa1087980:three_prime_UTR 40.0%
! GATGGAACCTTTTAGCATCT+CGG - chr7_3:768848-768867 None:intergenic 40.0%
AGAGTTTATGATAAGGGAGG+AGG + chr7_3:769291-769310 Msa1087980:intron 40.0%
GAGTTTATGATAAGGGAGGA+GGG + chr7_3:769292-769311 Msa1087980:intron 40.0%
TTTGACATTACCATGGGACT+AGG + chr7_3:769756-769775 Msa1087980:intron 40.0%
! CTGTACCTTGGATAGTCTTA+AGG + chr7_3:769835-769854 Msa1087980:intron 40.0%
CTTGACCTTAAGACTATCCA+AGG - chr7_3:769843-769862 None:intergenic 40.0%
TACATTGGCAACTAGATTGC+TGG + chr7_3:769864-769883 Msa1087980:intron 40.0%
!! ATTGCTGGATGGGTTACAAA+AGG + chr7_3:769879-769898 Msa1087980:intron 40.0%
! GGTTACAAAAGGTATGTGTC+AGG + chr7_3:769890-769909 Msa1087980:intron 40.0%
AACTTGGGGATAGCAGAAAT+AGG + chr7_3:770024-770043 Msa1087980:intron 40.0%
TACGGTTGGACATCTTAACA+CGG - chr7_3:770056-770075 None:intergenic 40.0%
ATTAATGAAGCGAAGCTGGA+TGG + chr7_3:770082-770101 Msa1087980:intron 40.0%
CAATTATCAGAGAAGCTGGA+TGG + chr7_3:770164-770183 Msa1087980:intron 40.0%
GTTTGTTTAATTGGCAACGG+GGG + chr7_3:770539-770558 Msa1087980:intron 40.0%
GAAGGACAGAGACTTATTTG+AGG + chr7_3:770683-770702 Msa1087980:intron 40.0%
TATTCAATCCAGTGTGGAGT+CGG - chr7_3:770868-770887 None:intergenic 40.0%
TCATAGTCCTAGCTAGCATA+TGG + chr7_3:771067-771086 Msa1087980:three_prime_UTR 40.0%
!!! ACGAACACAAGCTGCTTTTG+CGG - chr7_3:764899-764918 None:intergenic 45.0%
TAGGTTGTGAGTGTTTCAGG+CGG - chr7_3:764928-764947 None:intergenic 45.0%
GAGATTAGGGTTCGCGATTT+GGG - chr7_3:764984-765003 None:intergenic 45.0%
TGAGATTAGGGTTCGCGATT+TGG - chr7_3:764985-765004 None:intergenic 45.0%
ACCGTCATGATTCATGTAGC+AGG + chr7_3:765465-765484 Msa1087980:intron 45.0%
AATTTCTTCCGGCAAGAGCT+TGG - chr7_3:766199-766218 None:intergenic 45.0%
ATATTTCCACCGCTGCTGAA+AGG + chr7_3:766930-766949 Msa1087980:CDS 45.0%
ATAATCCCACCTTTCAGCAG+CGG - chr7_3:766942-766961 None:intergenic 45.0%
! GAAACCTAGGACGATTTTGC+TGG - chr7_3:766988-767007 None:intergenic 45.0%
!! GGGTGGGTGTTGATAATTCA+AGG + chr7_3:767209-767228 Msa1087980:CDS 45.0%
GGGATACTTCATCGTTTCTC+CGG - chr7_3:767290-767309 None:intergenic 45.0%
GGGAACCTTACTCAAAACAG+TGG + chr7_3:767355-767374 Msa1087980:CDS 45.0%
GACTGAGCGCAAATTGATTG+AGG + chr7_3:767717-767736 Msa1087980:CDS 45.0%
ATAAAGCAGCTCGCCAAGAA+TGG + chr7_3:768045-768064 Msa1087980:three_prime_UTR 45.0%
TAAAGCAGCTCGCCAAGAAT+GGG + chr7_3:768046-768065 Msa1087980:three_prime_UTR 45.0%
!! AGGAGTGGACTAAAACCTGA+TGG + chr7_3:768108-768127 Msa1087980:three_prime_UTR 45.0%
TGGGAATCTTGATGAAGCCT+TGG + chr7_3:768278-768297 Msa1087980:three_prime_UTR 45.0%
ACCTCTACACTTGGTTCCAT+TGG - chr7_3:768321-768340 None:intergenic 45.0%
TGGAACCAAGTGTAGAGGTA+TGG + chr7_3:768322-768341 Msa1087980:three_prime_UTR 45.0%
! GGAACCAAGTGTAGAGGTAT+GGG + chr7_3:768323-768342 Msa1087980:three_prime_UTR 45.0%
AGTTCATGGAAACACTGAGC+TGG + chr7_3:768368-768387 Msa1087980:three_prime_UTR 45.0%
GTTCATGGAAACACTGAGCT+GGG + chr7_3:768369-768388 Msa1087980:three_prime_UTR 45.0%
TTCATGGAAACACTGAGCTG+GGG + chr7_3:768370-768389 Msa1087980:three_prime_UTR 45.0%
TGCTGAACTGGTTGAGAAGT+TGG + chr7_3:768401-768420 Msa1087980:three_prime_UTR 45.0%
CGTATCCATGAATATCGAGC+AGG + chr7_3:768531-768550 Msa1087980:three_prime_UTR 45.0%
CAATAGCAAGTCTCTCACTG+TGG - chr7_3:768701-768720 None:intergenic 45.0%
TACTACGAGCAGGACTGTTA+AGG - chr7_3:768734-768753 None:intergenic 45.0%
TGTTCACCAATAATCCCTGC+AGG - chr7_3:768892-768911 None:intergenic 45.0%
ATCAAAGGTGGACAGTACCT+AGG - chr7_3:768919-768938 None:intergenic 45.0%
CACCATAGTACTGTAGAGTC+AGG + chr7_3:769666-769685 Msa1087980:intron 45.0%
AGCCTGACTCTACAGTACTA+TGG - chr7_3:769671-769690 None:intergenic 45.0%
!!! CTGCTTTTTCAAACTGCTGC+AGG + chr7_3:769689-769708 Msa1087980:intron 45.0%
GAGTGGACCCAAAATTCTCA+AGG - chr7_3:769724-769743 None:intergenic 45.0%
! GCTGAATCTAGGATAGCTGT+AGG + chr7_3:769778-769797 Msa1087980:intron 45.0%
! TTGTCTGAAACTGTGAGGCT+AGG + chr7_3:769812-769831 Msa1087980:intron 45.0%
TTGGCAACTAGATTGCTGGA+TGG + chr7_3:769868-769887 Msa1087980:intron 45.0%
TGGCAACTAGATTGCTGGAT+GGG + chr7_3:769869-769888 Msa1087980:intron 45.0%
! AAAGGTATGTGTCAGGTGAG+AGG + chr7_3:769897-769916 Msa1087980:intron 45.0%
GCTGTTTAAGCAAGATGGTG+TGG + chr7_3:769946-769965 Msa1087980:intron 45.0%
AGAGGTGAAACTTGGCAACT+TGG + chr7_3:770008-770027 Msa1087980:intron 45.0%
GAGGTGAAACTTGGCAACTT+GGG + chr7_3:770009-770028 Msa1087980:intron 45.0%
AGGTGAAACTTGGCAACTTG+GGG + chr7_3:770010-770029 Msa1087980:intron 45.0%
GCTCTGGTAAGAAAATCCGT+TGG + chr7_3:770107-770126 Msa1087980:intron 45.0%
CTGCTGCCTGCTATTATAAC+CGG - chr7_3:770141-770160 None:intergenic 45.0%
GCAGCAATTATCAGAGAAGC+TGG + chr7_3:770160-770179 Msa1087980:intron 45.0%
CAAGTACTACACCCTGAATC+CGG + chr7_3:770324-770343 Msa1087980:intron 45.0%
AAGAGTGAACTCCGGATTCA+GGG - chr7_3:770338-770357 None:intergenic 45.0%
AAAGAGTGAACTCCGGATTC+AGG - chr7_3:770339-770358 None:intergenic 45.0%
CAGTATTGTAAAGGGGTGGA+CGG - chr7_3:770436-770455 None:intergenic 45.0%
ATTCAATCCAGTGTGGAGTC+GGG - chr7_3:770867-770886 None:intergenic 45.0%
CCACACTGGATTGAATAACG+CGG + chr7_3:770871-770890 Msa1087980:three_prime_UTR 45.0%
CTAGCTAGGACTATGACACA+AGG - chr7_3:771063-771082 None:intergenic 45.0%
! AGGGTTCGCGATTTGGGAAT+TGG - chr7_3:764978-764997 None:intergenic 50.0%
! GCGTTGAGAAAGAGAGTGTG+TGG - chr7_3:765040-765059 None:intergenic 50.0%
TGTATCATGGGCCACCATTG+TGG + chr7_3:766136-766155 Msa1087980:intron 50.0%
GTCTGATGTGACCACAATGG+TGG - chr7_3:766150-766169 None:intergenic 50.0%
TGGTGTAACCAAGCTCTTGC+CGG + chr7_3:766188-766207 Msa1087980:intron 50.0%
CGACAGCAAAAGTGGGATAG+CGG - chr7_3:766621-766640 None:intergenic 50.0%
!! CGCTATCCCACTTTTGCTGT+CGG + chr7_3:766619-766638 Msa1087980:intron 50.0%
!! GGAAGTGTCAATGGGGACTT+TGG + chr7_3:767154-767173 Msa1087980:CDS 50.0%
!! GGCTTTGGGATGCATCCTTA+TGG + chr7_3:767232-767251 Msa1087980:CDS 50.0%
TTGCATGGAGGGTGAAGTGA+AGG + chr7_3:767753-767772 Msa1087980:CDS 50.0%
GCCAATGGAACCAAGTGTAG+AGG + chr7_3:768317-768336 Msa1087980:three_prime_UTR 50.0%
GTCTCCCATACCTCTACACT+TGG - chr7_3:768330-768349 None:intergenic 50.0%
TCATGGAAACACTGAGCTGG+GGG + chr7_3:768371-768390 Msa1087980:three_prime_UTR 50.0%
AGGGTGCACATGAAAGAAGC+TGG + chr7_3:768606-768625 Msa1087980:three_prime_UTR 50.0%
ACTCTGATGGTACTACGAGC+AGG - chr7_3:768744-768763 None:intergenic 50.0%
TAATCACATGTGTGGGTGGG+TGG + chr7_3:769406-769425 Msa1087980:intron 50.0%
AATCACATGTGTGGGTGGGT+GGG + chr7_3:769407-769426 Msa1087980:intron 50.0%
CTAGATTCAGCCTAGTCCCA+TGG - chr7_3:769769-769788 None:intergenic 50.0%
CATGGGACTAGGCTGAATCT+AGG + chr7_3:769767-769786 Msa1087980:intron 50.0%
TATGTGTCAGGTGAGAGGAG+AGG + chr7_3:769902-769921 Msa1087980:intron 50.0%
ATGTGTCAGGTGAGAGGAGA+GGG + chr7_3:769903-769922 Msa1087980:intron 50.0%
GCTGATGTGTTCCAGAAGTC+TGG - chr7_3:770254-770273 None:intergenic 50.0%
CGGACAGTATTGTAAAGGGG+TGG - chr7_3:770440-770459 None:intergenic 50.0%
GGGCGGACAGTATTGTAAAG+GGG - chr7_3:770443-770462 None:intergenic 50.0%
GGGGCGGACAGTATTGTAAA+GGG - chr7_3:770444-770463 None:intergenic 50.0%
AGGGGCGGACAGTATTGTAA+AGG - chr7_3:770445-770464 None:intergenic 50.0%
CCGCGTTATTCAATCCAGTG+TGG - chr7_3:770874-770893 None:intergenic 50.0%
GGATTGAATAACGCGGCTGT+TGG + chr7_3:770878-770897 Msa1087980:three_prime_UTR 50.0%
AGCAGCGTGTCGTGTATTCA+AGG + chr7_3:770953-770972 Msa1087980:three_prime_UTR 50.0%
GTTGTGAGTGTTTCAGGCGG+CGG - chr7_3:764925-764944 None:intergenic 55.0%
GGCGTCTGATGTGACCACAA+TGG - chr7_3:766153-766172 None:intergenic 55.0%
ATGCGGCCGACAGCAAAAGT+GGG - chr7_3:766628-766647 None:intergenic 55.0%
AATGCGGCCGACAGCAAAAG+TGG - chr7_3:766629-766648 None:intergenic 55.0%
!! TTTTGCTGTCGGCCGCATTC+TGG + chr7_3:766630-766649 Msa1087980:intron 55.0%
! TTTGCTGTCGGCCGCATTCT+GGG + chr7_3:766631-766650 Msa1087980:intron 55.0%
TTTCCACCGCTGCTGAAAGG+TGG + chr7_3:766933-766952 Msa1087980:CDS 55.0%
TTCCACCGCTGCTGAAAGGT+GGG + chr7_3:766934-766953 Msa1087980:CDS 55.0%
GGATCTGGTCAAACTGCACG+TGG + chr7_3:767070-767089 Msa1087980:CDS 55.0%
TCTGGTCAAACTGCACGTGG+AGG + chr7_3:767073-767092 Msa1087980:CDS 55.0%
CAAGTCTCTCACTGTGGCCA+AGG - chr7_3:768695-768714 None:intergenic 55.0%
TGTGAGGCTAGGCTGTACCT+TGG + chr7_3:769823-769842 Msa1087980:intron 55.0%
ATCCCACCTTTCAGCAGCGG+TGG - chr7_3:766939-766958 None:intergenic 60.0%
ACGCACGTGCGAACTGTGAG+AGG - chr7_3:767628-767647 None:intergenic 60.0%
GGGGGATCGTTGTGCTGAAC+TGG + chr7_3:768389-768408 Msa1087980:three_prime_UTR 60.0%
ACATGTGTGGGTGGGTGGGT+GGG + chr7_3:769411-769430 Msa1087980:intron 60.0%
GCGAAGCTGGATGGTAGCTC+TGG + chr7_3:770091-770110 Msa1087980:intron 60.0%
GGTGTATCCCGACTCCACAC+TGG + chr7_3:770857-770876 Msa1087980:intron 60.0%
CACATGTGTGGGTGGGTGGG+TGG + chr7_3:769410-769429 Msa1087980:intron 65.0%
TGTGTGGGTGGGTGGGTGGG+TGG + chr7_3:769414-769433 Msa1087980:intron 70.0%
GTGTGGGTGGGTGGGTGGGT+GGG + chr7_3:769415-769434 Msa1087980:intron 70.0%
TGTGGGTGGGTGGGTGGGTG+GGG + chr7_3:769416-769435 Msa1087980:intron 70.0%
GGTGGGTGGGTGGGTGGGGA+GGG + chr7_3:769420-769439 Msa1087980:intron 75.0%
GTGGGTGGGTGGGTGGGGAG+GGG + chr7_3:769421-769440 Msa1087980:intron 75.0%
! GGGTGGGTGGGTGGGTGGGG+AGG + chr7_3:769419-769438 Msa1087980:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 764885 771214 764885 ID=Msa1087980;Name=Msa1087980
chr7_3 mRNA 764885 771214 764885 ID=Msa1087980-mRNA-1;Parent=Msa1087980;Name=Msa1087980-mRNA-1;_AED=0.03;_eAED=0.03;_QI=266|0.66|1|1|0.33|0.25|4|1392|356
chr7_3 exon 764885 765084 764885 ID=Msa1087980-mRNA-1:exon:350;Parent=Msa1087980-mRNA-1
chr7_3 exon 765173 765221 765173 ID=Msa1087980-mRNA-1:exon:351;Parent=Msa1087980-mRNA-1
chr7_3 exon 766798 768920 766798 ID=Msa1087980-mRNA-1:exon:352;Parent=Msa1087980-mRNA-1
chr7_3 exon 770858 771214 770858 ID=Msa1087980-mRNA-1:exon:353;Parent=Msa1087980-mRNA-1
chr7_3 five_prime_UTR 764885 765084 764885 ID=Msa1087980-mRNA-1:five_prime_utr;Parent=Msa1087980-mRNA-1
chr7_3 five_prime_UTR 765173 765221 765173 ID=Msa1087980-mRNA-1:five_prime_utr;Parent=Msa1087980-mRNA-1
chr7_3 five_prime_UTR 766798 766814 766798 ID=Msa1087980-mRNA-1:five_prime_utr;Parent=Msa1087980-mRNA-1
chr7_3 CDS 766815 767885 766815 ID=Msa1087980-mRNA-1:cds;Parent=Msa1087980-mRNA-1
chr7_3 three_prime_UTR 767886 768920 767886 ID=Msa1087980-mRNA-1:three_prime_utr;Parent=Msa1087980-mRNA-1
chr7_3 three_prime_UTR 770858 771214 770858 ID=Msa1087980-mRNA-1:three_prime_utr;Parent=Msa1087980-mRNA-1
Gene Sequence

>Msa1087980

ATGATGTCTTCTAAGAAAGCTTCCTTAGTTACTGTTAATTCTCTTATGAGATTGTGCAATCGATGTTGTTCTCACCACGTTGCAAATTGTATCAAAGGGTCTAATACATCAAAGAATATTTCCACCGCTGCTGAAAGGTGGGATTATCAAGCTAATGATTCTTCGGATTACCAGCAAAATCGTCCTAGGTTTCATCAGCAAAATGCAAATGGATACTTTCCGAATAATCATGCTAGTTCAGAGCGAATTTATTATGGATCTGGTCAAACTGCACGTGGAGGACATGTAAATAATAATGTCACCCAGAATGTAGTTCAAAGTAATTTGGCAGAGCATAATGGAAGTGTCAATGGGGACTTTGGTCAAAGAAACTTCAAAATGCAACATAAAGTTGGGGTGGGTGTTGATAATTCAAGGGGCTTTGGGATGCATCCTTATGGTTCTTTTGAGAGACATGATTGGAGACTAGAATCCGGAGAAACGATGAAGTATCCCAATTCACATAGTTTACTTAGGCCTATAGAGTATCAGGGACATCATGGGAACCTTACTCAAAACAGTGGTCGTTGTCAGCAGACTCCAAATATGAATACTCAAAACTCTGCTCCATATAAAGATAAACTTAACAAACTAGATGAATTTTGCAAGGAGGGTGAAGTGAAGAAAGCAATTGCTGTTTTGCAAGAGTTAGAAAAGCTTCATGCTTATGTGGATTTGTATTTTTGTTTGCGATTAATACAACTGTGTGGAAAGGCTGAGTTTCTTGAAGAGGCAAAAGTTGTACACAGATATGTTTTACAACATTTGTCACCTCTCACAGTTCGCACGTGCGTTAGAATATTAGAGATGTATTTTCAATGTGGTTCTGTAGATGTAGTCAACGTGTTCAGGAACATGAACATGACTGAGCGCAAATTGATTGAGGAACTTGATAGTTCTTGCATGGAGGGTGAAGTGAAGGAAGCAATTGTTGTTTTGCAAGTGTTAGAAAGGTTTCATATTCCTGTGGATTTGGATCGTTGTTTGCGATTAATGCAACAATGTGGGAAGGTTGAGTCTCTGAAGAGTTAA

Protein sequence

>Msa1087980

MMSSKKASLVTVNSLMRLCNRCCSHHVANCIKGSNTSKNISTAAERWDYQANDSSDYQQNRPRFHQQNANGYFPNNHASSERIYYGSGQTARGGHVNNNVTQNVVQSNLAEHNGSVNGDFGQRNFKMQHKVGVGVDNSRGFGMHPYGSFERHDWRLESGETMKYPNSHSLLRPIEYQGHHGNLTQNSGRCQQTPNMNTQNSAPYKDKLNKLDEFCKEGEVKKAIAVLQELEKLHAYVDLYFCLRLIQLCGKAEFLEEAKVVHRYVLQHLSPLTVRTCVRILEMYFQCGSVDVVNVFRNMNMTERKLIEELDSSCMEGEVKEAIVVLQVLERFHIPVDLDRCLRLMQQCGKVESLKS*