AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0832090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832090 MtrunA17_Chr5g0393971 96.815 314 10 0 1 314 1 314 0.0 619
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832090 AT4G27630.7 79.936 314 62 1 1 314 1 313 0.0 522
Msa0832090 AT4G27630.2 79.936 314 62 1 1 314 1 313 0.0 521
Msa0832090 AT4G27630.4 79.936 314 62 1 1 314 1 313 0.0 520
Msa0832090 AT1G64990.1 79.936 314 63 0 1 314 1 314 0.0 511
Msa0832090 AT1G64990.2 79.936 314 63 0 1 314 1 314 0.0 511
Msa0832090 AT4G27630.3 74.260 338 62 2 1 314 1 337 1.64e-180 508
Msa0832090 AT4G27630.5 79.310 174 36 0 141 314 21 194 1.59e-94 281
Msa0832090 AT4G27630.6 79.310 174 36 0 141 314 21 194 7.02e-94 282
Msa0832090 AT4G27630.1 79.310 174 36 0 141 314 21 194 7.02e-94 282

Find 79 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCAGCCACATGGATATTT+TGG 0.145141 5_4:+5175436 None:intergenic
AATATATTGCTAATTGTATT+AGG 0.211006 5_4:-5175524 Msa0832090:three_prime_UTR
TATGCTAGATTAAGGTTTCT+TGG 0.232860 5_4:-5175707 Msa0832090:three_prime_UTR
ATTCTGTTTGATACTGTTAT+TGG 0.235327 5_4:-5178289 Msa0832090:CDS
GCTTTCAAAGCAATTGTTCT+TGG 0.239320 5_4:-5176113 Msa0832090:CDS
CCATATCATAAGCTTTATTC+AGG 0.275234 5_4:+5175473 None:intergenic
TGTAATTATCTAATGGAAAA+TGG 0.285414 5_4:+5178721 None:intergenic
CCTGAATAAAGCTTATGATA+TGG 0.285728 5_4:-5175473 Msa0832090:three_prime_UTR
ATGGCTGTTCTATCTGGTTT+TGG 0.288518 5_4:-5178054 Msa0832090:CDS
ACTGTCATGGCTGTTCTATC+TGG 0.294941 5_4:-5178060 Msa0832090:CDS
ATCAAGTAACAATGATAATA+AGG 0.302602 5_4:+5178255 None:intergenic
CCAATGCCATCACCTGATAA+AGG 0.308808 5_4:-5178132 Msa0832090:CDS
ATCTAGCGTTGTTTCGAAAT+CGG 0.359999 5_4:-5178667 Msa0832090:five_prime_UTR
TTAAGACTGTAATTATCTAA+TGG 0.364897 5_4:+5178714 None:intergenic
CCTCAATTGGTCAGTAGAAT+TGG 0.365468 5_4:-5178096 Msa0832090:CDS
GTTAGGATGGGTTGGGGAAG+AGG 0.370065 5_4:-5178622 Msa0832090:exon
CACTTGGTTGGGCAGGTGTT+TGG 0.371948 5_4:-5178561 Msa0832090:CDS
TTTCTTTACTATGCCTCAAT+TGG 0.379528 5_4:-5178109 Msa0832090:CDS
GAAAATTATTCTCGCTCAAA+TGG 0.382660 5_4:-5177911 Msa0832090:CDS
GAAACTAACCTTGCTCCTTC+TGG 0.382664 5_4:+5177545 None:intergenic
AAGTTTGTGTTCACTTGGTT+GGG 0.388000 5_4:-5178572 Msa0832090:CDS
TTGGAAGGTTCAGTTGTGTT+AGG 0.389903 5_4:-5178595 Msa0832090:CDS
GAAGTTTGTGTTCACTTGGT+TGG 0.392795 5_4:-5178573 Msa0832090:CDS
TCTTGGTGTTAGGATGGGTT+GGG 0.396451 5_4:-5178629 Msa0832090:exon
CAGATTTATGAGTTGGAACT+TGG 0.401015 5_4:+5175498 None:intergenic
CTGCTGCATATTCTCGAACT+TGG 0.408126 5_4:-5175835 Msa0832090:CDS
CTGAATAAAGCTTATGATAT+GGG 0.409763 5_4:-5175472 Msa0832090:three_prime_UTR
ATAGTAAAGAAACCTTTATC+AGG 0.415101 5_4:+5178120 None:intergenic
AATGGCTCGGAAGCAAAGTA+TGG 0.430951 5_4:-5175637 Msa0832090:three_prime_UTR
CTCCTTCTGGTCCTCTTGCA+CGG 0.431487 5_4:+5177558 None:intergenic
GTCAGTAGAATTGGTGTCAT+TGG 0.434768 5_4:-5178087 Msa0832090:CDS
GAGTGATCGATCTTGGTGTT+AGG 0.435022 5_4:-5178639 Msa0832090:five_prime_UTR
GGGTTGGGGAAGAGGAATCT+TGG 0.438549 5_4:-5178614 Msa0832090:CDS
TCAGGTTCAGATTTATGAGT+TGG 0.442211 5_4:+5175491 None:intergenic
TCTTTCCAAGGCCTTGATCT+CGG 0.449342 5_4:+5177975 None:intergenic
GGAAACCGAGATCAAGGCCT+TGG 0.464243 5_4:-5177980 Msa0832090:CDS
AATACGTTTGATAAAAGATC+TGG 0.470086 5_4:+5177600 None:intergenic
AGGCATGGAAGCAGAGGTAC+TGG 0.470967 5_4:-5176146 Msa0832090:CDS
ATCTTGGTGTTAGGATGGGT+TGG 0.472515 5_4:-5178630 Msa0832090:exon
GGAATCAGAGTGATCGATCT+TGG 0.479602 5_4:-5178646 Msa0832090:five_prime_UTR
GGACATATGCAGAATCTACT+AGG 0.481782 5_4:-5175809 Msa0832090:CDS
GACATACTCTTTAGAGAGGA+TGG 0.483171 5_4:+5178417 None:intergenic
TTGTGTGTATAAAATGATCA+AGG 0.483771 5_4:-5175768 Msa0832090:CDS
GATCGATCTTGGTGTTAGGA+TGG 0.484139 5_4:-5178635 Msa0832090:exon
TTGTGTTCACTTGGTTGGGC+AGG 0.487039 5_4:-5178568 Msa0832090:CDS
CCTTTATCAGGTGATGGCAT+TGG 0.491266 5_4:+5178132 None:intergenic
TCAGTCGGCAAATAGATTGT+TGG 0.495973 5_4:+5175609 None:intergenic
AAGAGTGATAAATAACTGTA+TGG 0.498599 5_4:+5178018 None:intergenic
GATTGAGGAAACCGAGATCA+AGG 0.500784 5_4:-5177986 Msa0832090:CDS
ATAGGGCAAGAGTTGTGAAC+TGG 0.500826 5_4:-5178323 Msa0832090:intron
CTGCATAAGTTGTCTTTCCA+AGG 0.506266 5_4:+5177963 None:intergenic
ACTCTTCATCAGAGAGATTG+AGG 0.519209 5_4:-5178001 Msa0832090:CDS
CAAACTAATGTTTGTAATGG+TGG 0.523917 5_4:-5175683 Msa0832090:three_prime_UTR
GGACAAACTAATGTTTGTAA+TGG 0.533807 5_4:-5175686 Msa0832090:three_prime_UTR
TGTCATTGGTGTTACTGTCA+TGG 0.534360 5_4:-5178073 Msa0832090:CDS
CCAATTCTACTGACCAATTG+AGG 0.538924 5_4:+5178096 None:intergenic
TTAGGAAGTTTGTGTTCACT+TGG 0.543040 5_4:-5178577 Msa0832090:CDS
TTCGTTAGGTATAAATGGCT+CGG 0.544263 5_4:-5175650 Msa0832090:three_prime_UTR
CTATGAGCTTCGACAAGCAA+AGG 0.544516 5_4:-5176086 Msa0832090:intron
TACTTGATGCTTAAAAGCAG+TGG 0.544743 5_4:-5178240 Msa0832090:CDS
TATTCTCGCTCAAATGGAGA+TGG 0.549765 5_4:-5177905 Msa0832090:CDS
AAGAAACCTTTATCAGGTGA+TGG 0.558347 5_4:+5178126 None:intergenic
CTTGGTGTTAGGATGGGTTG+GGG 0.562766 5_4:-5178628 Msa0832090:exon
AGAACTGAAAGAGCTGCACT+TGG 0.565424 5_4:-5178213 Msa0832090:CDS
ATCGATCTTGGTGTTAGGAT+GGG 0.572234 5_4:-5178634 Msa0832090:exon
CTTATGCAGTCAATTGAGAC+TGG 0.572440 5_4:-5177949 Msa0832090:CDS
GCATATTCTCGAACTTGGAA+AGG 0.574715 5_4:-5175830 Msa0832090:CDS
ATGTGAAGATATCAAAGGCA+TGG 0.581837 5_4:-5176161 Msa0832090:intron
GTTGAATGTGAAGATATCAA+AGG 0.586462 5_4:-5176166 Msa0832090:intron
CAAGAGGACCAGAAGGAGCA+AGG 0.594045 5_4:-5177553 Msa0832090:intron
AGTTGTTCGATCCGTGCAAG+AGG 0.594350 5_4:-5177569 Msa0832090:CDS
ACATACTCTTTAGAGAGGAT+GGG 0.598774 5_4:+5178418 None:intergenic
TATCAAAGGCATGGAAGCAG+AGG 0.616520 5_4:-5176152 Msa0832090:CDS
ATCCGTGCAAGAGGACCAGA+AGG 0.621117 5_4:-5177560 Msa0832090:CDS
GAACAAGCAAGGATCTGAAG+AGG 0.635624 5_4:-5177881 Msa0832090:intron
ATGGAGATGGAGAACAAGCA+AGG 0.635747 5_4:-5177892 Msa0832090:CDS
AAATGACATACTCTTTAGAG+AGG 0.641736 5_4:+5178413 None:intergenic
TGGGGAAGAGGAATCTTGGA+AGG 0.674682 5_4:-5178610 Msa0832090:CDS
AATTTACCAAAATATCCATG+TGG 0.727791 5_4:-5175442 Msa0832090:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTAATTTGTTGTAATA+GGG - chr5_4:5175811-5175830 Msa0832090:CDS 10.0%
!! AATCAATTAATCAATCAATT+AGG + chr5_4:5175779-5175798 None:intergenic 15.0%
!!! GATAATTAATTTGTTGTAAT+AGG - chr5_4:5175810-5175829 Msa0832090:CDS 15.0%
!! AATAAAACCTATAAAGAAAA+TGG + chr5_4:5176468-5176487 None:intergenic 15.0%
!!! ATATTTTATATGCTAGATTA+AGG - chr5_4:5178436-5178455 Msa0832090:CDS 15.0%
!! AATATATTGCTAATTGTATT+AGG - chr5_4:5178627-5178646 Msa0832090:exon 15.0%
!! TGTAATTATCTAATGGAAAA+TGG + chr5_4:5175433-5175452 None:intergenic 20.0%
!! TTAAGACTGTAATTATCTAA+TGG + chr5_4:5175440-5175459 None:intergenic 20.0%
!! ATCAATCAATTAGGTTAATA+AGG + chr5_4:5175770-5175789 None:intergenic 20.0%
!! ATCAAGTAACAATGATAATA+AGG + chr5_4:5175899-5175918 None:intergenic 20.0%
!! AATTATATTGACATTTCCTT+TGG - chr5_4:5176374-5176393 Msa0832090:intron 20.0%
!! TATTAAAATTGTGAAACCAA+AGG + chr5_4:5176393-5176412 None:intergenic 20.0%
!!! AAAATTTATATCTCTAAAGC+AGG + chr5_4:5176662-5176681 None:intergenic 20.0%
!!! TGCTTTAGAGATATAAATTT+TGG - chr5_4:5176661-5176680 Msa0832090:intron 20.0%
!! ATGATAGTACAAATATTCAA+AGG - chr5_4:5176984-5177003 Msa0832090:intron 20.0%
!! GAATTTAGTACAATGTTTAA+TGG - chr5_4:5177027-5177046 Msa0832090:intron 20.0%
!!! AAGTTTTCCTTTTTCTTTAT+TGG - chr5_4:5177686-5177705 Msa0832090:intron 20.0%
!! TGAATATCCAATAAAGAAAA+AGG + chr5_4:5177696-5177715 None:intergenic 20.0%
!! GAAACATATAAATTGAGAAA+TGG + chr5_4:5177732-5177751 None:intergenic 20.0%
!!! ATGTTTCCTTTTTATCAAAA+TGG - chr5_4:5177745-5177764 Msa0832090:intron 20.0%
!!! TGTTTCCTTTTTATCAAAAT+GGG - chr5_4:5177746-5177765 Msa0832090:intron 20.0%
!!! TTAGAATTTTTTGCTCAAAT+TGG - chr5_4:5177817-5177836 Msa0832090:intron 20.0%
!!! TAGAATTTTTTGCTCAAATT+GGG - chr5_4:5177818-5177837 Msa0832090:intron 20.0%
!!! CTATTTTCCAGTTTTTTTAA+AGG + chr5_4:5178132-5178151 None:intergenic 20.0%
!!! CATTTTATACACACAATAAA+CGG + chr5_4:5178379-5178398 None:intergenic 20.0%
! ATTCTGTTTGATACTGTTAT+TGG - chr5_4:5175862-5175881 Msa0832090:intron 25.0%
!!! TTGCTTTTCTTTATGCTTTT+TGG - chr5_4:5175978-5175997 Msa0832090:intron 25.0%
! ATAGTAAAGAAACCTTTATC+AGG + chr5_4:5176034-5176053 None:intergenic 25.0%
! AAGAGTGATAAATAACTGTA+TGG + chr5_4:5176136-5176155 None:intergenic 25.0%
!!! TTTTTTTATCTTTTGCCACT+CGG - chr5_4:5176298-5176317 Msa0832090:intron 25.0%
!!! TGTAAAGCCATTTTCTTTAT+AGG - chr5_4:5176458-5176477 Msa0832090:intron 25.0%
! AATACGTTTGATAAAAGATC+TGG + chr5_4:5176554-5176573 None:intergenic 25.0%
!! TCTTTTATCAAACGTATTGT+TGG - chr5_4:5176556-5176575 Msa0832090:intron 25.0%
!!! ATGGCTTTTTCAAGAATAAA+AGG + chr5_4:5176631-5176650 None:intergenic 25.0%
! TTCACCAACTATTATAACTT+TGG - chr5_4:5176865-5176884 Msa0832090:intron 25.0%
! TCACCAACTATTATAACTTT+GGG - chr5_4:5176866-5176885 Msa0832090:intron 25.0%
! TTTCCCAAAGTTATAATAGT+TGG + chr5_4:5176872-5176891 None:intergenic 25.0%
!! AACTATTATAACTTTGGGAA+AGG - chr5_4:5176871-5176890 Msa0832090:intron 25.0%
! GTAGTTGCAGAAAATTATAA+AGG - chr5_4:5177065-5177084 Msa0832090:intron 25.0%
! TATTTCATGCCTTAATTCTT+TGG - chr5_4:5177152-5177171 Msa0832090:intron 25.0%
!! GTTTCCTTTTTATCAAAATG+GGG - chr5_4:5177747-5177766 Msa0832090:intron 25.0%
! ACTTATTTGCATGATTGAAA+GGG + chr5_4:5177777-5177796 None:intergenic 25.0%
! TACTTATTTGCATGATTGAA+AGG + chr5_4:5177778-5177797 None:intergenic 25.0%
! ATTCTAATCATACTGAAACA+TGG + chr5_4:5177804-5177823 None:intergenic 25.0%
!!! AGAATTTTTTGCTCAAATTG+GGG - chr5_4:5177819-5177838 Msa0832090:intron 25.0%
!!! ACATGATTTGTTTTTACTAC+TGG - chr5_4:5177853-5177872 Msa0832090:intron 25.0%
! TGAAGTGATTCAGTTAATAA+TGG - chr5_4:5177879-5177898 Msa0832090:intron 25.0%
!!! ACAGTTTTTTGTGATGATAT+CGG + chr5_4:5178101-5178120 None:intergenic 25.0%
! AAATCTGCTTACTATGAAAA+TGG - chr5_4:5178275-5178294 Msa0832090:CDS 25.0%
! TTGTGTGTATAAAATGATCA+AGG - chr5_4:5178383-5178402 Msa0832090:intron 25.0%
!!! ATTTTTAGTTTAGCATCAGT+CGG + chr5_4:5178560-5178579 None:intergenic 25.0%
! CTGAATAAAGCTTATGATAT+GGG - chr5_4:5178679-5178698 Msa0832090:five_prime_UTR 25.0%
! AATTTACCAAAATATCCATG+TGG - chr5_4:5178709-5178728 Msa0832090:five_prime_UTR 25.0%
!! CTTTGTCCTAATTTTTGTTA+GGG + chr5_4:5178779-5178798 None:intergenic 25.0%
!! ACTTTGTCCTAATTTTTGTT+AGG + chr5_4:5178780-5178799 None:intergenic 25.0%
!! AACGCTAGATTCTGTTTTAA+TGG + chr5_4:5175474-5175493 None:intergenic 30.0%
! AAATGACATACTCTTTAGAG+AGG + chr5_4:5175741-5175760 None:intergenic 30.0%
!! TCTTTATGCTTTTTGGAGAA+TGG - chr5_4:5175985-5176004 Msa0832090:intron 30.0%
!! CTTTATGCTTTTTGGAGAAT+GGG - chr5_4:5175986-5176005 Msa0832090:intron 30.0%
TTTCTTTACTATGCCTCAAT+TGG - chr5_4:5176042-5176061 Msa0832090:intron 30.0%
GAAAATTATTCTCGCTCAAA+TGG - chr5_4:5176240-5176259 Msa0832090:intron 30.0%
GAGTGGCAAAAGATAAAAAA+AGG + chr5_4:5176299-5176318 None:intergenic 30.0%
TAAACAAAAACTGTGTACTG+AGG - chr5_4:5176720-5176739 Msa0832090:intron 30.0%
! GATGATTTGCATTTATGTAG+TGG - chr5_4:5176793-5176812 Msa0832090:intron 30.0%
TAGTGGTTTATGTGTTTAGT+TGG - chr5_4:5176810-5176829 Msa0832090:intron 30.0%
! AATAACGCTTGAGTTTTTCA+AGG - chr5_4:5176835-5176854 Msa0832090:intron 30.0%
GTATTAACTAGAAATTGAGC+AGG - chr5_4:5176904-5176923 Msa0832090:intron 30.0%
! AAAAGGATTGCCTTATTGAT+GGG - chr5_4:5176957-5176976 Msa0832090:intron 30.0%
TATCATTACACCCATCAATA+AGG + chr5_4:5176970-5176989 None:intergenic 30.0%
AAGGAACTGAACTTGATTAA+TGG - chr5_4:5177003-5177022 Msa0832090:intron 30.0%
AGGAACTGAACTTGATTAAT+GGG - chr5_4:5177004-5177023 Msa0832090:intron 30.0%
GGACTCTTATAAATAAGAGA+AGG + chr5_4:5177178-5177197 None:intergenic 30.0%
CAATCTAGGAAATTTGAATG+TGG + chr5_4:5177199-5177218 None:intergenic 30.0%
ATGAGTCAAAGAGTTGAAAA+GGG + chr5_4:5177222-5177241 None:intergenic 30.0%
AATGAGTCAAAGAGTTGAAA+AGG + chr5_4:5177223-5177242 None:intergenic 30.0%
AACTCTTTGACTCATTACAA+TGG - chr5_4:5177227-5177246 Msa0832090:intron 30.0%
ACTCTTTGACTCATTACAAT+GGG - chr5_4:5177228-5177247 Msa0832090:intron 30.0%
GCAAAAAACCAACTAACTAA+AGG - chr5_4:5177372-5177391 Msa0832090:intron 30.0%
ATTTCTGTAGCTTCTATATG+AGG - chr5_4:5177405-5177424 Msa0832090:intron 30.0%
! ACAAGTTTGAGTTATGGAAT+CGG - chr5_4:5177568-5177587 Msa0832090:CDS 30.0%
TATTGGATATTCAGAGAGAT+TGG - chr5_4:5177703-5177722 Msa0832090:intron 30.0%
!!! GAATTTTTTGCTCAAATTGG+GGG - chr5_4:5177820-5177839 Msa0832090:intron 30.0%
GTTGAATGTGAAGATATCAA+AGG - chr5_4:5177985-5178004 Msa0832090:CDS 30.0%
GATATCATCACAAAAAACTG+TGG - chr5_4:5178100-5178119 Msa0832090:CDS 30.0%
CAAGTTCAATCACATTAAGA+TGG + chr5_4:5178230-5178249 None:intergenic 30.0%
CATCTTAATGTGATTGAACT+TGG - chr5_4:5178228-5178247 Msa0832090:CDS 30.0%
TATGCTAGATTAAGGTTTCT+TGG - chr5_4:5178444-5178463 Msa0832090:CDS 30.0%
GGACAAACTAATGTTTGTAA+TGG - chr5_4:5178465-5178484 Msa0832090:CDS 30.0%
CAAACTAATGTTTGTAATGG+TGG - chr5_4:5178468-5178487 Msa0832090:CDS 30.0%
! AGCTTTTCGTTAGGTATAAA+TGG - chr5_4:5178496-5178515 Msa0832090:CDS 30.0%
!! CCATATCATAAGCTTTATTC+AGG + chr5_4:5178681-5178700 None:intergenic 30.0%
CCTGAATAAAGCTTATGATA+TGG - chr5_4:5178678-5178697 Msa0832090:five_prime_UTR 30.0%
ACAGTTCCCTAACAAAAATT+AGG - chr5_4:5178770-5178789 Msa0832090:five_prime_UTR 30.0%
! ATCTAGCGTTGTTTCGAAAT+CGG - chr5_4:5175484-5175503 Msa0832090:three_prime_UTR 35.0%
TTAGGAAGTTTGTGTTCACT+TGG - chr5_4:5175574-5175593 Msa0832090:three_prime_UTR 35.0%
AAGTTTGTGTTCACTTGGTT+GGG - chr5_4:5175579-5175598 Msa0832090:three_prime_UTR 35.0%
! ACATACTCTTTAGAGAGGAT+GGG + chr5_4:5175736-5175755 None:intergenic 35.0%
TACTTGATGCTTAAAAGCAG+TGG - chr5_4:5175911-5175930 Msa0832090:intron 35.0%
AAGAAACCTTTATCAGGTGA+TGG + chr5_4:5176028-5176047 None:intergenic 35.0%
GAACAGGAACACAAAGTAAA+AGG + chr5_4:5176493-5176512 None:intergenic 35.0%
TAACTAGAAATTGAGCAGGA+AGG - chr5_4:5176908-5176927 Msa0832090:intron 35.0%
AACTAGAAATTGAGCAGGAA+GGG - chr5_4:5176909-5176928 Msa0832090:intron 35.0%
GAAATTCTCGCAGAAACAAA+AGG - chr5_4:5176940-5176959 Msa0832090:intron 35.0%
! CAAAAGGATTGCCTTATTGA+TGG - chr5_4:5176956-5176975 Msa0832090:intron 35.0%
GGAACTGAACTTGATTAATG+GGG - chr5_4:5177005-5177024 Msa0832090:intron 35.0%
AAGAGAAGGCCAAAGAATTA+AGG + chr5_4:5177164-5177183 None:intergenic 35.0%
GTTGGAAAATAACTCAGTCT+TGG + chr5_4:5177296-5177315 None:intergenic 35.0%
TTTGCTCGTCAGTTAGTAAA+CGG + chr5_4:5177357-5177376 None:intergenic 35.0%
TAGACATGCCTTTAGTTAGT+TGG + chr5_4:5177383-5177402 None:intergenic 35.0%
!! TTCAAAGCCTTTTGTTGCTT+TGG + chr5_4:5177498-5177517 None:intergenic 35.0%
!! CAACAAAAGGCTTTGAAGTT+GGG - chr5_4:5177501-5177520 Msa0832090:intron 35.0%
!! AACAAAAGGCTTTGAAGTTG+GGG - chr5_4:5177502-5177521 Msa0832090:intron 35.0%
CACATGAAAGTAACTGCTAA+AGG + chr5_4:5177537-5177556 None:intergenic 35.0%
ATTTGCATGATTGAAAGGGA+CGG + chr5_4:5177773-5177792 None:intergenic 35.0%
ATGTGAAGATATCAAAGGCA+TGG - chr5_4:5177990-5178009 Msa0832090:CDS 35.0%
GCTTTCAAAGCAATTGTTCT+TGG - chr5_4:5178038-5178057 Msa0832090:CDS 35.0%
! GCGTTGACCTTTAAAAAAAC+TGG - chr5_4:5178122-5178141 Msa0832090:CDS 35.0%
CAATCACATTAAGATGGAGT+TGG + chr5_4:5178224-5178243 None:intergenic 35.0%
GAAAATGGTTTCAACTATGC+AGG - chr5_4:5178290-5178309 Msa0832090:CDS 35.0%
TTCGTTAGGTATAAATGGCT+CGG - chr5_4:5178501-5178520 Msa0832090:CDS 35.0%
! CAGATTTATGAGTTGGAACT+TGG + chr5_4:5178656-5178675 None:intergenic 35.0%
TCAGGTTCAGATTTATGAGT+TGG + chr5_4:5178663-5178682 None:intergenic 35.0%
! TTTCAGCCACATGGATATTT+TGG + chr5_4:5178718-5178737 None:intergenic 35.0%
! TGTTCATATTTTCAGCCACA+TGG + chr5_4:5178727-5178746 None:intergenic 35.0%
!! ATCGATCTTGGTGTTAGGAT+GGG - chr5_4:5175517-5175536 Msa0832090:three_prime_UTR 40.0%
TTGGAAGGTTCAGTTGTGTT+AGG - chr5_4:5175556-5175575 Msa0832090:three_prime_UTR 40.0%
GAAGTTTGTGTTCACTTGGT+TGG - chr5_4:5175578-5175597 Msa0832090:three_prime_UTR 40.0%
! GACATACTCTTTAGAGAGGA+TGG + chr5_4:5175737-5175756 None:intergenic 40.0%
CCAATTCTACTGACCAATTG+AGG + chr5_4:5176058-5176077 None:intergenic 40.0%
CCTCAATTGGTCAGTAGAAT+TGG - chr5_4:5176055-5176074 Msa0832090:intron 40.0%
!! GTCAGTAGAATTGGTGTCAT+TGG - chr5_4:5176064-5176083 Msa0832090:intron 40.0%
!! TGTCATTGGTGTTACTGTCA+TGG - chr5_4:5176078-5176097 Msa0832090:intron 40.0%
!! ATGGCTGTTCTATCTGGTTT+TGG - chr5_4:5176097-5176116 Msa0832090:CDS 40.0%
ACTCTTCATCAGAGAGATTG+AGG - chr5_4:5176150-5176169 Msa0832090:CDS 40.0%
CTGCATAAGTTGTCTTTCCA+AGG + chr5_4:5176191-5176210 None:intergenic 40.0%
CTTATGCAGTCAATTGAGAC+TGG - chr5_4:5176202-5176221 Msa0832090:intron 40.0%
TATTCTCGCTCAAATGGAGA+TGG - chr5_4:5176246-5176265 Msa0832090:intron 40.0%
AGTTCAGATGAAGCTAGAAC+AGG + chr5_4:5176509-5176528 None:intergenic 40.0%
!! TCTGAACTTGTTTTTCGCAG+AGG - chr5_4:5176521-5176540 Msa0832090:intron 40.0%
AGAGTTGAAAAGGGCAATCT+AGG + chr5_4:5177213-5177232 None:intergenic 40.0%
TGACTCATTACAATGGGTCT+CGG - chr5_4:5177234-5177253 Msa0832090:intron 40.0%
AGGCAGAATAAGTAGACAGT+TGG + chr5_4:5177314-5177333 None:intergenic 40.0%
GTTAGGAGGTGACTATAGAT+AGG + chr5_4:5177334-5177353 None:intergenic 40.0%
TTGCTCGTCAGTTAGTAAAC+GGG + chr5_4:5177356-5177375 None:intergenic 40.0%
TGTAGCTTCTATATGAGGCT+TGG - chr5_4:5177410-5177429 Msa0832090:intron 40.0%
ATGAGCTCCAAAGCAACAAA+AGG - chr5_4:5177488-5177507 Msa0832090:intron 40.0%
!! GCAACAAAAGGCTTTGAAGT+TGG - chr5_4:5177500-5177519 Msa0832090:intron 40.0%
! GAGGTCACAAGTTTGAGTTA+TGG - chr5_4:5177562-5177581 Msa0832090:CDS 40.0%
CCTTGTCTTGCATTTACAAG+AGG + chr5_4:5177594-5177613 None:intergenic 40.0%
CCTCTTGTAAATGCAAGACA+AGG - chr5_4:5177591-5177610 Msa0832090:CDS 40.0%
TGTAGGCCATGAGTTATTGT+GGG + chr5_4:5177620-5177639 None:intergenic 40.0%
AAACTTGTGCTATCCAGTCA+TGG + chr5_4:5177672-5177691 None:intergenic 40.0%
!! ACGGCCCCATTTTGATAAAA+AGG + chr5_4:5177754-5177773 None:intergenic 40.0%
GCATATTCTCGAACTTGGAA+AGG - chr5_4:5178321-5178340 Msa0832090:CDS 40.0%
GGACATATGCAGAATCTACT+AGG - chr5_4:5178342-5178361 Msa0832090:intron 40.0%
TCAGTCGGCAAATAGATTGT+TGG + chr5_4:5178545-5178564 None:intergenic 40.0%
GGAATCAGAGTGATCGATCT+TGG - chr5_4:5175505-5175524 Msa0832090:three_prime_UTR 45.0%
!! GAGTGATCGATCTTGGTGTT+AGG - chr5_4:5175512-5175531 Msa0832090:three_prime_UTR 45.0%
!! GATCGATCTTGGTGTTAGGA+TGG - chr5_4:5175516-5175535 Msa0832090:three_prime_UTR 45.0%
!! ATCTTGGTGTTAGGATGGGT+TGG - chr5_4:5175521-5175540 Msa0832090:three_prime_UTR 45.0%
!! TCTTGGTGTTAGGATGGGTT+GGG - chr5_4:5175522-5175541 Msa0832090:three_prime_UTR 45.0%
ATAGGGCAAGAGTTGTGAAC+TGG - chr5_4:5175828-5175847 Msa0832090:CDS 45.0%
AGAACTGAAAGAGCTGCACT+TGG - chr5_4:5175938-5175957 Msa0832090:intron 45.0%
! CCTTTATCAGGTGATGGCAT+TGG + chr5_4:5176022-5176041 None:intergenic 45.0%
CCAATGCCATCACCTGATAA+AGG - chr5_4:5176019-5176038 Msa0832090:intron 45.0%
ACTGTCATGGCTGTTCTATC+TGG - chr5_4:5176091-5176110 Msa0832090:CDS 45.0%
GATTGAGGAAACCGAGATCA+AGG - chr5_4:5176165-5176184 Msa0832090:intron 45.0%
TCTTTCCAAGGCCTTGATCT+CGG + chr5_4:5176179-5176198 None:intergenic 45.0%
ATGGAGATGGAGAACAAGCA+AGG - chr5_4:5176259-5176278 Msa0832090:intron 45.0%
GAACAAGCAAGGATCTGAAG+AGG - chr5_4:5176270-5176289 Msa0832090:intron 45.0%
! TTTGCCACTCGGCATGTTTT+TGG - chr5_4:5176309-5176328 Msa0832090:intron 45.0%
GAAACTAACCTTGCTCCTTC+TGG + chr5_4:5176609-5176628 None:intergenic 45.0%
! TCTAAAGCAGGCGCTTCAAA+TGG + chr5_4:5176650-5176669 None:intergenic 45.0%
ATTGAGCAGGAAGGGAAGAA+AGG - chr5_4:5176917-5176936 Msa0832090:intron 45.0%
TTGAGCAGGAAGGGAAGAAA+GGG - chr5_4:5176918-5176937 Msa0832090:intron 45.0%
TTACAATGGGTCTCGGTCAA+TGG - chr5_4:5177241-5177260 Msa0832090:intron 45.0%
!! CAGTTAGTAAACGGGTTAGG+AGG + chr5_4:5177348-5177367 None:intergenic 45.0%
! CGTCAGTTAGTAAACGGGTT+AGG + chr5_4:5177351-5177370 None:intergenic 45.0%
! TGAGGCTTGGTTAGTGTTCA+TGG - chr5_4:5177423-5177442 Msa0832090:intron 45.0%
! GAGGCTTGGTTAGTGTTCAT+GGG - chr5_4:5177424-5177443 Msa0832090:intron 45.0%
! TTTGGAGCTCATACTGTAGC+GGG + chr5_4:5177480-5177499 None:intergenic 45.0%
!! CTTTGGAGCTCATACTGTAG+CGG + chr5_4:5177481-5177500 None:intergenic 45.0%
! GCAGTTACTTTCATGTGCCT+AGG - chr5_4:5177540-5177559 Msa0832090:intron 45.0%
! GTTACTTTCATGTGCCTAGG+AGG - chr5_4:5177543-5177562 Msa0832090:intron 45.0%
ACTCAAACTTGTGACCTCCT+AGG + chr5_4:5177560-5177579 None:intergenic 45.0%
AGGTTGCCCACAATAACTCA+TGG - chr5_4:5177611-5177630 Msa0832090:CDS 45.0%
CTGTAGGCCATGAGTTATTG+TGG + chr5_4:5177621-5177640 None:intergenic 45.0%
TTGTGCTATCCAGTCATGGT+GGG + chr5_4:5177668-5177687 None:intergenic 45.0%
! TATCAAAGGCATGGAAGCAG+AGG - chr5_4:5177999-5178018 Msa0832090:CDS 45.0%
CTATGAGCTTCGACAAGCAA+AGG - chr5_4:5178065-5178084 Msa0832090:CDS 45.0%
CTGCTGCATATTCTCGAACT+TGG - chr5_4:5178316-5178335 Msa0832090:CDS 45.0%
!!! GTGGACTAGAGCTTTTCGTT+AGG - chr5_4:5178487-5178506 Msa0832090:CDS 45.0%
! AATGGCTCGGAAGCAAAGTA+TGG - chr5_4:5178514-5178533 Msa0832090:CDS 45.0%
!!! TACAAATTTTTAAATTTTTT+TGG - chr5_4:5177963-5177982 Msa0832090:CDS 5.0%
!! CTTGGTGTTAGGATGGGTTG+GGG - chr5_4:5175523-5175542 Msa0832090:three_prime_UTR 50.0%
TGGGGAAGAGGAATCTTGGA+AGG - chr5_4:5175541-5175560 Msa0832090:three_prime_UTR 50.0%
TTGTGTTCACTTGGTTGGGC+AGG - chr5_4:5175583-5175602 Msa0832090:three_prime_UTR 50.0%
GAGTCCAAAAACATGCCGAG+TGG + chr5_4:5176316-5176335 None:intergenic 50.0%
AGTTGTTCGATCCGTGCAAG+AGG - chr5_4:5176582-5176601 Msa0832090:intron 50.0%
!! CTCATACTGTAGCGGGTCTA+GGG + chr5_4:5177473-5177492 None:intergenic 50.0%
!! AAGGCTTTGAAGTTGGGGTG+TGG - chr5_4:5177507-5177526 Msa0832090:intron 50.0%
!! AGGCTTTGAAGTTGGGGTGT+GGG - chr5_4:5177508-5177527 Msa0832090:intron 50.0%
GAAGGGTCGGACATATCTGT+AGG + chr5_4:5177637-5177656 None:intergenic 50.0%
TGTGCTATCCAGTCATGGTG+GGG + chr5_4:5177667-5177686 None:intergenic 50.0%
CTTGTGCTATCCAGTCATGG+TGG + chr5_4:5177669-5177688 None:intergenic 50.0%
!! GTTAGGATGGGTTGGGGAAG+AGG - chr5_4:5175529-5175548 Msa0832090:three_prime_UTR 55.0%
GGGTTGGGGAAGAGGAATCT+TGG - chr5_4:5175537-5175556 Msa0832090:three_prime_UTR 55.0%
CACTTGGTTGGGCAGGTGTT+TGG - chr5_4:5175590-5175609 Msa0832090:three_prime_UTR 55.0%
GGAAACCGAGATCAAGGCCT+TGG - chr5_4:5176171-5176190 Msa0832090:intron 55.0%
ATCCGTGCAAGAGGACCAGA+AGG - chr5_4:5176591-5176610 Msa0832090:intron 55.0%
CTCCTTCTGGTCCTCTTGCA+CGG + chr5_4:5176596-5176615 None:intergenic 55.0%
CAAGAGGACCAGAAGGAGCA+AGG - chr5_4:5176598-5176617 Msa0832090:intron 55.0%
!! ACTGTAGCGGGTCTAGGGAA+GGG + chr5_4:5177468-5177487 None:intergenic 55.0%
!! TACTGTAGCGGGTCTAGGGA+AGG + chr5_4:5177469-5177488 None:intergenic 55.0%
!! GCTCATACTGTAGCGGGTCT+AGG + chr5_4:5177474-5177493 None:intergenic 55.0%
!! GGCTTTGAAGTTGGGGTGTG+GGG - chr5_4:5177509-5177528 Msa0832090:intron 55.0%
! CATGGTGGGGGTCTAGAGAA+GGG + chr5_4:5177654-5177673 None:intergenic 55.0%
! TCATGGTGGGGGTCTAGAGA+AGG + chr5_4:5177655-5177674 None:intergenic 55.0%
GTGCTATCCAGTCATGGTGG+GGG + chr5_4:5177666-5177685 None:intergenic 55.0%
! AGGCATGGAAGCAGAGGTAC+TGG - chr5_4:5178005-5178024 Msa0832090:CDS 55.0%
GTGGGGGTCTAGAGAAGGGT+CGG + chr5_4:5177650-5177669 None:intergenic 60.0%
CTCTAGACCCCCACCATGAC+TGG - chr5_4:5177656-5177675 Msa0832090:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 5175365 5178808 5175365 ID=Msa0832090;Name=Msa0832090
chr5_4 mRNA 5175365 5178808 5175365 ID=Msa0832090-mRNA-1;Parent=Msa0832090;Name=Msa0832090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=170|1|1|1|1|1|5|395|314
chr5_4 exon 5175365 5175861 5175365 ID=Msa0832090-mRNA-1:exon:2150;Parent=Msa0832090-mRNA-1
chr5_4 exon 5176087 5176175 5176087 ID=Msa0832090-mRNA-1:exon:2149;Parent=Msa0832090-mRNA-1
chr5_4 exon 5177554 5177632 5177554 ID=Msa0832090-mRNA-1:exon:2148;Parent=Msa0832090-mRNA-1
chr5_4 exon 5177882 5178341 5177882 ID=Msa0832090-mRNA-1:exon:2147;Parent=Msa0832090-mRNA-1
chr5_4 exon 5178424 5178808 5178424 ID=Msa0832090-mRNA-1:exon:2146;Parent=Msa0832090-mRNA-1
chr5_4 five_prime_UTR 5178639 5178808 5178639 ID=Msa0832090-mRNA-1:five_prime_utr;Parent=Msa0832090-mRNA-1
chr5_4 CDS 5178424 5178638 5178424 ID=Msa0832090-mRNA-1:cds;Parent=Msa0832090-mRNA-1
chr5_4 CDS 5177882 5178341 5177882 ID=Msa0832090-mRNA-1:cds;Parent=Msa0832090-mRNA-1
chr5_4 CDS 5177554 5177632 5177554 ID=Msa0832090-mRNA-1:cds;Parent=Msa0832090-mRNA-1
chr5_4 CDS 5176087 5176175 5176087 ID=Msa0832090-mRNA-1:cds;Parent=Msa0832090-mRNA-1
chr5_4 CDS 5175760 5175861 5175760 ID=Msa0832090-mRNA-1:cds;Parent=Msa0832090-mRNA-1
chr5_4 three_prime_UTR 5175365 5175759 5175365 ID=Msa0832090-mRNA-1:three_prime_utr;Parent=Msa0832090-mRNA-1
Gene Sequence

>Msa0832090

ATGGGTTGGGGAAGAGGAATCTTGGAAGGTTCAGTTGTGTTAGGAAGTTTGTGTTCACTTGGTTGGGCAGGTGTTTGGTTTTTGAATCGTCGTCTCTACAAAGAATATGAAGAGAAACGCGTTCTTGTTCAAATCATTTTCAGTATTGTCTTTGCTTTCTCTTGCAATCTTCTTCAGCTTGTTATCTTCGAAATCATTCCCATCCTCTCTAAAGAGGCAAGAGTTGTGAACTGGAAGATTGATCTATTCTGTTTGATACTGTTATTGGTGTTTCTTTTGCCTTATTATCATTGTTACTTGATGCTTAAAAGCAGTGGTTTGAGAACTGAAAGAGCTGCACTTGGTGCTGTTCTGTTCTTGTTTGCTTTTCTTTATGCTTTTTGGAGAATGGGTATTCACTTTCCAATGCCATCACCTGATAAAGGTTTCTTTACTATGCCTCAATTGGTCAGTAGAATTGGTGTCATTGGTGTTACTGTCATGGCTGTTCTATCTGGTTTTGGTGCTGTTAACTTGCCATACAGTTATTTATCACTCTTCATCAGAGAGATTGAGGAAACCGAGATCAAGGCCTTGGAAAGACAACTTATGCAGTCAATTGAGACTGGTATTTCAAACAAAAAGAAAATTATTCTCGCTCAAATGGAGATGGAGAACAAGCAAGGATCTGAAGAGAGGTTAACTGCCAGATCTTTTATCAAACGTATTGTTGGTACAGTTGTTCGATCCGTGCAAGAGGACCAGAAGGAGCAAGATATCAAAGGCATGGAAGCAGAGGTACTGGCTTTAGAAGAGCTTTCAAAGCAATTGTTCTTGGAGATCTATGAGCTTCGACAAGCAAAGGAAGCTGCTGCATATTCTCGAACTTGGAAAGGACATATGCAGAATCTACTAGGTTATGCTTGTTCCGTTTATTGTGTGTATAAAATGATCAAGGTATTGTGA

Protein sequence

>Msa0832090

MGWGRGILEGSVVLGSLCSLGWAGVWFLNRRLYKEYEEKRVLVQIIFSIVFAFSCNLLQLVIFEIIPILSKEARVVNWKIDLFCLILLLVFLLPYYHCYLMLKSSGLRTERAALGAVLFLFAFLYAFWRMGIHFPMPSPDKGFFTMPQLVSRIGVIGVTVMAVLSGFGAVNLPYSYLSLFIREIEETEIKALERQLMQSIETGISNKKKIILAQMEMENKQGSEERLTARSFIKRIVGTVVRSVQEDQKEQDIKGMEAEVLALEELSKQLFLEIYELRQAKEAAAYSRTWKGHMQNLLGYACSVYCVYKMIKVL*