Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639670 | XP_013455580.1 | 94.382 | 89 | 5 | 0 | 1 | 89 | 1 | 89 | 1.56e-54 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639670 | G7ZX33 | 94.382 | 89 | 5 | 0 | 1 | 89 | 1 | 89 | 7.47e-55 | 174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0639670 | Msa0768710 | 0.800093 | 1.694337e-48 | -8.615850e-47 |
| Msa0639670 | Msa0881210 | 0.805408 | 1.354609e-49 | -8.615850e-47 |
| Msa0639670 | Msa1260230 | 0.805686 | 1.184194e-49 | -8.615850e-47 |
| Msa0245980 | Msa0639670 | -0.800069 | 1.712904e-48 | -8.615850e-47 |
| Msa0304270 | Msa0639670 | 0.814190 | 1.747999e-51 | -8.615850e-47 |
| Msa0532810 | Msa0639670 | 0.837292 | 5.665100e-57 | -8.615850e-47 |
| Msa0598830 | Msa0639670 | 0.865969 | 4.015839e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639670 | MtrunA17_Chr4g0022541 | 94.382 | 89 | 5 | 0 | 1 | 89 | 1 | 89 | 1.44e-58 | 174 |
| Msa0639670 | MtrunA17_Chr2g0318351 | 57.143 | 84 | 33 | 1 | 3 | 86 | 6 | 86 | 8.33e-32 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639670 | AT2G20820.1 | 58.140 | 86 | 35 | 1 | 1 | 85 | 1 | 86 | 6.31e-29 | 100 |
| Msa0639670 | AT2G20820.2 | 50.000 | 62 | 30 | 1 | 1 | 61 | 1 | 62 | 1.98e-12 | 58.5 |
Find 44 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCCTTACATACATAAAA+AGG | 0.236331 | 4_3:-36309558 | Msa0639670:five_prime_UTR |
| TTTGTGATTGTCTCTTTAAC+TGG | 0.238620 | 4_3:-36308510 | Msa0639670:CDS |
| ACCCAATGAGTCCTTCTAAA+TGG | 0.292979 | 4_3:-36308674 | Msa0639670:CDS |
| AGAAGTTTCCCAGACAATTA+TGG | 0.293054 | 4_3:+36308229 | None:intergenic |
| GGCTGGGGACTAACATTCTA+TGG | 0.313459 | 4_3:-36308489 | Msa0639670:CDS |
| TGCTCTTCCTTCCATTTAGA+AGG | 0.313496 | 4_3:+36308663 | None:intergenic |
| TGATTGTCTCTTTAACTGGC+TGG | 0.342484 | 4_3:-36308506 | Msa0639670:CDS |
| TTCCATTTAGAAGGACTCAT+TGG | 0.371713 | 4_3:+36308672 | None:intergenic |
| ACAATATATCCATAATTGTC+TGG | 0.382043 | 4_3:-36308238 | Msa0639670:CDS |
| GATGAGTTGAATGGGAGATT+TGG | 0.382911 | 4_3:+36309417 | None:intergenic |
| CGTGGCCTCTCCGCAGCTGC+AGG | 0.383883 | 4_3:-36309388 | Msa0639670:intron |
| CTGCGGAGAGGCCACGGCGG+TGG | 0.416853 | 4_3:+36309395 | None:intergenic |
| GATCAATCAAGTGGGTGTAT+TGG | 0.432503 | 4_3:+36309576 | None:intergenic |
| CTGCAGCTGCGGAGAGGCCA+CGG | 0.454721 | 4_3:+36309389 | None:intergenic |
| TTCAGAGAAATGATGTCCTC+CGG | 0.460602 | 4_3:+36309509 | None:intergenic |
| ACGGCGGTGGATGAGTTGAA+TGG | 0.461675 | 4_3:+36309408 | None:intergenic |
| CTGAAGCTCGATAGCAATCA+TGG | 0.466881 | 4_3:-36309491 | Msa0639670:exon |
| TCCATTTAGAAGGACTCATT+GGG | 0.472687 | 4_3:+36308673 | None:intergenic |
| CGGCGGTGGATGAGTTGAAT+GGG | 0.484723 | 4_3:+36309409 | None:intergenic |
| GATTGTCTCTTTAACTGGCT+GGG | 0.485266 | 4_3:-36308505 | Msa0639670:CDS |
| TTGAATGGGAGATTTGGAAG+AGG | 0.488798 | 4_3:+36309423 | None:intergenic |
| ACTCATTGGGTCTTTCCAGC+AGG | 0.521627 | 4_3:+36308686 | None:intergenic |
| ATTGTCTCTTTAACTGGCTG+GGG | 0.524474 | 4_3:-36308504 | Msa0639670:CDS |
| CAATATATCCATAATTGTCT+GGG | 0.530312 | 4_3:-36308237 | Msa0639670:CDS |
| TTTCCAGCAGGCAACTTTAG+CGG | 0.538012 | 4_3:+36308698 | None:intergenic |
| GCTGGGGACTAACATTCTAT+GGG | 0.545264 | 4_3:-36308488 | Msa0639670:CDS |
| GTTCCGCTAAAGTTGCCTGC+TGG | 0.548596 | 4_3:-36308701 | Msa0639670:CDS |
| AATGAGTCCTTCTAAATGGA+AGG | 0.562278 | 4_3:-36308670 | Msa0639670:CDS |
| TCAGAGAAATGATGTCCTCC+GGG | 0.578637 | 4_3:+36309510 | None:intergenic |
| TTCAGGAGGCAAGAAAGAAG+AGG | 0.592752 | 4_3:-36308451 | Msa0639670:intron |
| TGCGGCTCCGCGTACGAGAG+AGG | 0.592826 | 4_3:+36309468 | None:intergenic |
| TACGCAGTCGTTTAATAACC+CGG | 0.620625 | 4_3:-36309528 | Msa0639670:five_prime_UTR |
| TATGTAAGGATCAATCAAGT+GGG | 0.641376 | 4_3:+36309568 | None:intergenic |
| AGGCAACTTTAGCGGAACCA+TGG | 0.643716 | 4_3:+36308706 | None:intergenic |
| ATTCAACTCATCCACCGCCG+TGG | 0.648831 | 4_3:-36309406 | Msa0639670:CDS |
| ATCATGGCCTCTCTCGTACG+CGG | 0.653998 | 4_3:-36309475 | Msa0639670:CDS |
| GTATGTAAGGATCAATCAAG+TGG | 0.655046 | 4_3:+36309567 | None:intergenic |
| TTGATTATTGCAGATCACCA+TGG | 0.656234 | 4_3:-36308723 | Msa0639670:intron |
| AAGAACCTGCAGCTGCGGAG+AGG | 0.667295 | 4_3:+36309383 | None:intergenic |
| CTGGGGACTAACATTCTATG+GGG | 0.689871 | 4_3:-36308487 | Msa0639670:CDS |
| CAGCTGCGGAGAGGCCACGG+CGG | 0.706800 | 4_3:+36309392 | None:intergenic |
| TGGGGACTAACATTCTATGG+GGG | 0.723176 | 4_3:-36308486 | Msa0639670:CDS |
| AGTGATGCGAGTTAGAGATG+CGG | 0.731219 | 4_3:+36309450 | None:intergenic |
| GCAGTCGTTTAATAACCCGG+AGG | 0.826193 | 4_3:-36309525 | Msa0639670:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATCTTGTTTACATATT+TGG | - | chr4_3:36308906-36308925 | Msa0639670:intron | 15.0% |
| !!! | TTAAATCTTGTTTACATATT+TGG | - | chr4_3:36308906-36308925 | Msa0639670:intron | 15.0% |
| !! | TGATTAAGTAAATAGAGAAA+TGG | + | chr4_3:36308449-36308468 | None:intergenic | 20.0% |
| !! | ATATTAGCTATTAAATGACA+AGG | - | chr4_3:36308612-36308631 | Msa0639670:intron | 20.0% |
| !! | TATTAGCTATTAAATGACAA+GGG | - | chr4_3:36308613-36308632 | Msa0639670:intron | 20.0% |
| !!! | CAATTTTGATATATGTGAAA+TGG | - | chr4_3:36309047-36309066 | Msa0639670:intron | 20.0% |
| !!! | TGTTATTTTTTACATTGAGA+TGG | - | chr4_3:36309212-36309231 | Msa0639670:intron | 20.0% |
| !! | TGATTAAGTAAATAGAGAAA+TGG | + | chr4_3:36308449-36308468 | None:intergenic | 20.0% |
| !! | ATATTAGCTATTAAATGACA+AGG | - | chr4_3:36308612-36308631 | Msa0639670:intron | 20.0% |
| !! | TATTAGCTATTAAATGACAA+GGG | - | chr4_3:36308613-36308632 | Msa0639670:intron | 20.0% |
| !!! | CAATTTTGATATATGTGAAA+TGG | - | chr4_3:36309047-36309066 | Msa0639670:intron | 20.0% |
| !!! | TGTTATTTTTTACATTGAGA+TGG | - | chr4_3:36309212-36309231 | Msa0639670:intron | 20.0% |
| ! | TGATCCTTACATACATAAAA+AGG | - | chr4_3:36308244-36308263 | Msa0639670:intron | 25.0% |
| !! | TAAGCCTTTTTATGTATGTA+AGG | + | chr4_3:36308251-36308270 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGGATAGATTAA+TGG | - | chr4_3:36308952-36308971 | Msa0639670:intron | 25.0% |
| !!! | ATTAATGGACTAATGATACA+AGG | - | chr4_3:36308967-36308986 | Msa0639670:intron | 25.0% |
| !!! | ATTTTTTACATTGAGATGGT+TGG | - | chr4_3:36309216-36309235 | Msa0639670:intron | 25.0% |
| !!! | ATATTCTTTTGAGTTTTGTC+TGG | - | chr4_3:36309252-36309271 | Msa0639670:intron | 25.0% |
| ! | ACAATATATCCATAATTGTC+TGG | - | chr4_3:36309564-36309583 | Msa0639670:five_prime_UTR | 25.0% |
| ! | CAATATATCCATAATTGTCT+GGG | - | chr4_3:36309565-36309584 | Msa0639670:five_prime_UTR | 25.0% |
| ! | TGATCCTTACATACATAAAA+AGG | - | chr4_3:36308244-36308263 | Msa0639670:intron | 25.0% |
| !! | TAAGCCTTTTTATGTATGTA+AGG | + | chr4_3:36308251-36308270 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGGATAGATTAA+TGG | - | chr4_3:36308952-36308971 | Msa0639670:intron | 25.0% |
| !!! | ATTAATGGACTAATGATACA+AGG | - | chr4_3:36308967-36308986 | Msa0639670:intron | 25.0% |
| !!! | ATTTTTTACATTGAGATGGT+TGG | - | chr4_3:36309216-36309235 | Msa0639670:intron | 25.0% |
| !!! | ATATTCTTTTGAGTTTTGTC+TGG | - | chr4_3:36309252-36309271 | Msa0639670:intron | 25.0% |
| ! | ACAATATATCCATAATTGTC+TGG | - | chr4_3:36309564-36309583 | Msa0639670:five_prime_UTR | 25.0% |
| ! | CAATATATCCATAATTGTCT+GGG | - | chr4_3:36309565-36309584 | Msa0639670:five_prime_UTR | 25.0% |
| TATGTAAGGATCAATCAAGT+GGG | + | chr4_3:36308237-36308256 | None:intergenic | 30.0% | |
| TATTAAATGACAAGGGAGAA+AGG | - | chr4_3:36308620-36308639 | Msa0639670:intron | 30.0% | |
| ATTAAATGACAAGGGAGAAA+GGG | - | chr4_3:36308621-36308640 | Msa0639670:intron | 30.0% | |
| GAGAGCTTAATGTTTATCAA+TGG | - | chr4_3:36308662-36308681 | Msa0639670:CDS | 30.0% | |
| ATGTTTATCAATGGCGAATA+AGG | - | chr4_3:36308671-36308690 | Msa0639670:CDS | 30.0% | |
| TTAAAGAGACAATCACAAAC+TGG | + | chr4_3:36309291-36309310 | None:intergenic | 30.0% | |
| TTTGTGATTGTCTCTTTAAC+TGG | - | chr4_3:36309292-36309311 | Msa0639670:intron | 30.0% | |
| AAGTCAGCTATAATCAAACA+AGG | + | chr4_3:36309461-36309480 | None:intergenic | 30.0% | |
| ! | ATCCATGCACTATTTTACAA+CGG | + | chr4_3:36309520-36309539 | None:intergenic | 30.0% |
| TATGTAAGGATCAATCAAGT+GGG | + | chr4_3:36308237-36308256 | None:intergenic | 30.0% | |
| TATTAAATGACAAGGGAGAA+AGG | - | chr4_3:36308620-36308639 | Msa0639670:intron | 30.0% | |
| ATTAAATGACAAGGGAGAAA+GGG | - | chr4_3:36308621-36308640 | Msa0639670:intron | 30.0% | |
| GAGAGCTTAATGTTTATCAA+TGG | - | chr4_3:36308662-36308681 | Msa0639670:CDS | 30.0% | |
| ATGTTTATCAATGGCGAATA+AGG | - | chr4_3:36308671-36308690 | Msa0639670:CDS | 30.0% | |
| TTAAAGAGACAATCACAAAC+TGG | + | chr4_3:36309291-36309310 | None:intergenic | 30.0% | |
| TTTGTGATTGTCTCTTTAAC+TGG | - | chr4_3:36309292-36309311 | Msa0639670:intron | 30.0% | |
| AAGTCAGCTATAATCAAACA+AGG | + | chr4_3:36309461-36309480 | None:intergenic | 30.0% | |
| ! | ATCCATGCACTATTTTACAA+CGG | + | chr4_3:36309520-36309539 | None:intergenic | 30.0% |
| GTATGTAAGGATCAATCAAG+TGG | + | chr4_3:36308238-36308257 | None:intergenic | 35.0% | |
| CATGGATTTGGATTTGGATT+TGG | + | chr4_3:36308483-36308502 | None:intergenic | 35.0% | |
| TTCAGACATGGATTTGGATT+TGG | + | chr4_3:36308489-36308508 | None:intergenic | 35.0% | |
| ATCCAAATCCATGTCTGAAT+TGG | - | chr4_3:36308490-36308509 | Msa0639670:CDS | 35.0% | |
| TTCCAATTCAGACATGGATT+TGG | + | chr4_3:36308495-36308514 | None:intergenic | 35.0% | |
| AGCTTATTCCAATTCAGACA+TGG | + | chr4_3:36308501-36308520 | None:intergenic | 35.0% | |
| GTTTCGAATTGTTCTGTGAT+TGG | - | chr4_3:36308547-36308566 | Msa0639670:intron | 35.0% | |
| TATCAATGGCGAATAAGGTT+TGG | - | chr4_3:36308676-36308695 | Msa0639670:CDS | 35.0% | |
| AAACATTACAACAGACTGAG+TGG | - | chr4_3:36308807-36308826 | Msa0639670:intron | 35.0% | |
| GGATGCTTCAACTTATGATA+TGG | - | chr4_3:36308861-36308880 | Msa0639670:intron | 35.0% | |
| ! | TTCGAACAAGCAATTGACTT+TGG | - | chr4_3:36308934-36308953 | Msa0639670:intron | 35.0% |
| !! | CAAGCAATTGACTTTGGTTT+TGG | - | chr4_3:36308940-36308959 | Msa0639670:intron | 35.0% |
| TACAAGGACGAATAGATGTT+TGG | - | chr4_3:36308983-36309002 | Msa0639670:intron | 35.0% | |
| TTGATTATTGCAGATCACCA+TGG | - | chr4_3:36309079-36309098 | Msa0639670:intron | 35.0% | |
| TCCATTTAGAAGGACTCATT+GGG | + | chr4_3:36309132-36309151 | None:intergenic | 35.0% | |
| TTCCATTTAGAAGGACTCAT+TGG | + | chr4_3:36309133-36309152 | None:intergenic | 35.0% | |
| AATGAGTCCTTCTAAATGGA+AGG | - | chr4_3:36309132-36309151 | Msa0639670:intron | 35.0% | |
| !! | GGATACAAGTTATTTTCAGG+AGG | - | chr4_3:36309337-36309356 | Msa0639670:intron | 35.0% |
| ATACCGTATTTATTAGCTCG+TGG | - | chr4_3:36309410-36309429 | Msa0639670:CDS | 35.0% | |
| TAGCCACGAGCTAATAAATA+CGG | + | chr4_3:36309416-36309435 | None:intergenic | 35.0% | |
| TGGATATATTGTCCTGTACA+TGG | + | chr4_3:36309556-36309575 | None:intergenic | 35.0% | |
| AGAAGTTTCCCAGACAATTA+TGG | + | chr4_3:36309576-36309595 | None:intergenic | 35.0% | |
| TTCATGTGTAGATGAAGTGT+AGG | - | chr4_3:36309595-36309614 | Msa0639670:five_prime_UTR | 35.0% | |
| GTATGTAAGGATCAATCAAG+TGG | + | chr4_3:36308238-36308257 | None:intergenic | 35.0% | |
| CATGGATTTGGATTTGGATT+TGG | + | chr4_3:36308483-36308502 | None:intergenic | 35.0% | |
| TTCAGACATGGATTTGGATT+TGG | + | chr4_3:36308489-36308508 | None:intergenic | 35.0% | |
| ATCCAAATCCATGTCTGAAT+TGG | - | chr4_3:36308490-36308509 | Msa0639670:CDS | 35.0% | |
| TTCCAATTCAGACATGGATT+TGG | + | chr4_3:36308495-36308514 | None:intergenic | 35.0% | |
| AGCTTATTCCAATTCAGACA+TGG | + | chr4_3:36308501-36308520 | None:intergenic | 35.0% | |
| GTTTCGAATTGTTCTGTGAT+TGG | - | chr4_3:36308547-36308566 | Msa0639670:intron | 35.0% | |
| TATCAATGGCGAATAAGGTT+TGG | - | chr4_3:36308676-36308695 | Msa0639670:CDS | 35.0% | |
| AAACATTACAACAGACTGAG+TGG | - | chr4_3:36308807-36308826 | Msa0639670:intron | 35.0% | |
| GGATGCTTCAACTTATGATA+TGG | - | chr4_3:36308861-36308880 | Msa0639670:intron | 35.0% | |
| ! | TTCGAACAAGCAATTGACTT+TGG | - | chr4_3:36308934-36308953 | Msa0639670:intron | 35.0% |
| !! | CAAGCAATTGACTTTGGTTT+TGG | - | chr4_3:36308940-36308959 | Msa0639670:intron | 35.0% |
| TACAAGGACGAATAGATGTT+TGG | - | chr4_3:36308983-36309002 | Msa0639670:intron | 35.0% | |
| TTGATTATTGCAGATCACCA+TGG | - | chr4_3:36309079-36309098 | Msa0639670:intron | 35.0% | |
| TCCATTTAGAAGGACTCATT+GGG | + | chr4_3:36309132-36309151 | None:intergenic | 35.0% | |
| TTCCATTTAGAAGGACTCAT+TGG | + | chr4_3:36309133-36309152 | None:intergenic | 35.0% | |
| AATGAGTCCTTCTAAATGGA+AGG | - | chr4_3:36309132-36309151 | Msa0639670:intron | 35.0% | |
| !! | GGATACAAGTTATTTTCAGG+AGG | - | chr4_3:36309337-36309356 | Msa0639670:intron | 35.0% |
| ATACCGTATTTATTAGCTCG+TGG | - | chr4_3:36309410-36309429 | Msa0639670:CDS | 35.0% | |
| TAGCCACGAGCTAATAAATA+CGG | + | chr4_3:36309416-36309435 | None:intergenic | 35.0% | |
| TGGATATATTGTCCTGTACA+TGG | + | chr4_3:36309556-36309575 | None:intergenic | 35.0% | |
| AGAAGTTTCCCAGACAATTA+TGG | + | chr4_3:36309576-36309595 | None:intergenic | 35.0% | |
| GATCAATCAAGTGGGTGTAT+TGG | + | chr4_3:36308229-36308248 | None:intergenic | 40.0% | |
| TACGCAGTCGTTTAATAACC+CGG | - | chr4_3:36308274-36308293 | Msa0639670:intron | 40.0% | |
| TTCAGAGAAATGATGTCCTC+CGG | + | chr4_3:36308296-36308315 | None:intergenic | 40.0% | |
| TTGAATGGGAGATTTGGAAG+AGG | + | chr4_3:36308382-36308401 | None:intergenic | 40.0% | |
| ! | GATGAGTTGAATGGGAGATT+TGG | + | chr4_3:36308388-36308407 | None:intergenic | 40.0% |
| GGCGAATAAGGTTTGGATTT+CGG | - | chr4_3:36308683-36308702 | Msa0639670:CDS | 40.0% | |
| ATAAGGTTTGGATTTCGGCT+AGG | - | chr4_3:36308688-36308707 | Msa0639670:CDS | 40.0% | |
| TTTCCCATAAGTTACCTCCA+CGG | + | chr4_3:36308761-36308780 | None:intergenic | 40.0% | |
| TACAACAGACTGAGTGGAAT+TGG | - | chr4_3:36308813-36308832 | Msa0639670:intron | 40.0% | |
| GAATCTGTTCAGCATAGTCA+TGG | - | chr4_3:36308840-36308859 | Msa0639670:intron | 40.0% | |
| ACCCAATGAGTCCTTCTAAA+TGG | - | chr4_3:36309128-36309147 | Msa0639670:intron | 40.0% | |
| TGCTCTTCCTTCCATTTAGA+AGG | + | chr4_3:36309142-36309161 | None:intergenic | 40.0% | |
| AAGAGACAATCACAAACTGG+AGG | + | chr4_3:36309288-36309307 | None:intergenic | 40.0% | |
| TGATTGTCTCTTTAACTGGC+TGG | - | chr4_3:36309296-36309315 | Msa0639670:intron | 40.0% | |
| GATTGTCTCTTTAACTGGCT+GGG | - | chr4_3:36309297-36309316 | Msa0639670:intron | 40.0% | |
| ATTGTCTCTTTAACTGGCTG+GGG | - | chr4_3:36309298-36309317 | Msa0639670:intron | 40.0% | |
| !! | GGGGGATACAAGTTATTTTC+AGG | - | chr4_3:36309334-36309353 | Msa0639670:intron | 40.0% |
| TTAGTTCCTTGACCATGTAC+AGG | - | chr4_3:36309541-36309560 | Msa0639670:five_prime_UTR | 40.0% | |
| TATTGTCCTGTACATGGTCA+AGG | + | chr4_3:36309550-36309569 | None:intergenic | 40.0% | |
| GATCAATCAAGTGGGTGTAT+TGG | + | chr4_3:36308229-36308248 | None:intergenic | 40.0% | |
| TACGCAGTCGTTTAATAACC+CGG | - | chr4_3:36308274-36308293 | Msa0639670:intron | 40.0% | |
| TTCAGAGAAATGATGTCCTC+CGG | + | chr4_3:36308296-36308315 | None:intergenic | 40.0% | |
| TTGAATGGGAGATTTGGAAG+AGG | + | chr4_3:36308382-36308401 | None:intergenic | 40.0% | |
| ! | GATGAGTTGAATGGGAGATT+TGG | + | chr4_3:36308388-36308407 | None:intergenic | 40.0% |
| GGCGAATAAGGTTTGGATTT+CGG | - | chr4_3:36308683-36308702 | Msa0639670:CDS | 40.0% | |
| ATAAGGTTTGGATTTCGGCT+AGG | - | chr4_3:36308688-36308707 | Msa0639670:CDS | 40.0% | |
| TTTCCCATAAGTTACCTCCA+CGG | + | chr4_3:36308761-36308780 | None:intergenic | 40.0% | |
| TACAACAGACTGAGTGGAAT+TGG | - | chr4_3:36308813-36308832 | Msa0639670:intron | 40.0% | |
| GAATCTGTTCAGCATAGTCA+TGG | - | chr4_3:36308840-36308859 | Msa0639670:intron | 40.0% | |
| ACCCAATGAGTCCTTCTAAA+TGG | - | chr4_3:36309128-36309147 | Msa0639670:intron | 40.0% | |
| TGCTCTTCCTTCCATTTAGA+AGG | + | chr4_3:36309142-36309161 | None:intergenic | 40.0% | |
| AAGAGACAATCACAAACTGG+AGG | + | chr4_3:36309288-36309307 | None:intergenic | 40.0% | |
| TGATTGTCTCTTTAACTGGC+TGG | - | chr4_3:36309296-36309315 | Msa0639670:intron | 40.0% | |
| GATTGTCTCTTTAACTGGCT+GGG | - | chr4_3:36309297-36309316 | Msa0639670:intron | 40.0% | |
| ATTGTCTCTTTAACTGGCTG+GGG | - | chr4_3:36309298-36309317 | Msa0639670:intron | 40.0% | |
| !! | GGGGGATACAAGTTATTTTC+AGG | - | chr4_3:36309334-36309353 | Msa0639670:intron | 40.0% |
| TTAGTTCCTTGACCATGTAC+AGG | - | chr4_3:36309541-36309560 | Msa0639670:five_prime_UTR | 40.0% | |
| TATTGTCCTGTACATGGTCA+AGG | + | chr4_3:36309550-36309569 | None:intergenic | 40.0% | |
| TCAGAGAAATGATGTCCTCC+GGG | + | chr4_3:36308295-36308314 | None:intergenic | 45.0% | |
| CTGAAGCTCGATAGCAATCA+TGG | - | chr4_3:36308311-36308330 | Msa0639670:intron | 45.0% | |
| AGTGATGCGAGTTAGAGATG+CGG | + | chr4_3:36308355-36308374 | None:intergenic | 45.0% | |
| GAAAAAAGAACCTGCAGCTG+CGG | + | chr4_3:36308427-36308446 | None:intergenic | 45.0% | |
| TTCCCATAAGTTACCTCCAC+GGG | + | chr4_3:36308760-36308779 | None:intergenic | 45.0% | |
| TTTCCAGCAGGCAACTTTAG+CGG | + | chr4_3:36309107-36309126 | None:intergenic | 45.0% | |
| GCTGGGGACTAACATTCTAT+GGG | - | chr4_3:36309314-36309333 | Msa0639670:intron | 45.0% | |
| CTGGGGACTAACATTCTATG+GGG | - | chr4_3:36309315-36309334 | Msa0639670:intron | 45.0% | |
| TGGGGACTAACATTCTATGG+GGG | - | chr4_3:36309316-36309335 | Msa0639670:intron | 45.0% | |
| TTCAGGAGGCAAGAAAGAAG+AGG | - | chr4_3:36309351-36309370 | Msa0639670:intron | 45.0% | |
| CGCCGTTGTAAAATAGTGCA+TGG | - | chr4_3:36309515-36309534 | Msa0639670:five_prime_UTR | 45.0% | |
| TCAGAGAAATGATGTCCTCC+GGG | + | chr4_3:36308295-36308314 | None:intergenic | 45.0% | |
| CTGAAGCTCGATAGCAATCA+TGG | - | chr4_3:36308311-36308330 | Msa0639670:intron | 45.0% | |
| AGTGATGCGAGTTAGAGATG+CGG | + | chr4_3:36308355-36308374 | None:intergenic | 45.0% | |
| GAAAAAAGAACCTGCAGCTG+CGG | + | chr4_3:36308427-36308446 | None:intergenic | 45.0% | |
| TTCCCATAAGTTACCTCCAC+GGG | + | chr4_3:36308760-36308779 | None:intergenic | 45.0% | |
| TTTCCAGCAGGCAACTTTAG+CGG | + | chr4_3:36309107-36309126 | None:intergenic | 45.0% | |
| GCTGGGGACTAACATTCTAT+GGG | - | chr4_3:36309314-36309333 | Msa0639670:intron | 45.0% | |
| CTGGGGACTAACATTCTATG+GGG | - | chr4_3:36309315-36309334 | Msa0639670:intron | 45.0% | |
| TGGGGACTAACATTCTATGG+GGG | - | chr4_3:36309316-36309335 | Msa0639670:intron | 45.0% | |
| TTCAGGAGGCAAGAAAGAAG+AGG | - | chr4_3:36309351-36309370 | Msa0639670:intron | 45.0% | |
| CGCCGTTGTAAAATAGTGCA+TGG | - | chr4_3:36309515-36309534 | Msa0639670:five_prime_UTR | 45.0% | |
| GCAGTCGTTTAATAACCCGG+AGG | - | chr4_3:36308277-36308296 | Msa0639670:intron | 50.0% | |
| GACAAGGGAGAAAGGGTCTT+CGG | - | chr4_3:36308628-36308647 | Msa0639670:intron | 50.0% | |
| ACAAGGGAGAAAGGGTCTTC+GGG | - | chr4_3:36308629-36308648 | Msa0639670:intron | 50.0% | |
| TCGAAGAGGATTATCTCCCG+TGG | - | chr4_3:36308741-36308760 | Msa0639670:intron | 50.0% | |
| AAGAGGATTATCTCCCGTGG+AGG | - | chr4_3:36308744-36308763 | Msa0639670:intron | 50.0% | |
| TCTCCCGTGGAGGTAACTTA+TGG | - | chr4_3:36308754-36308773 | Msa0639670:intron | 50.0% | |
| CTCCCGTGGAGGTAACTTAT+GGG | - | chr4_3:36308755-36308774 | Msa0639670:intron | 50.0% | |
| AGGCAACTTTAGCGGAACCA+TGG | + | chr4_3:36309099-36309118 | None:intergenic | 50.0% | |
| ACTCATTGGGTCTTTCCAGC+AGG | + | chr4_3:36309119-36309138 | None:intergenic | 50.0% | |
| GGCTGGGGACTAACATTCTA+TGG | - | chr4_3:36309313-36309332 | Msa0639670:intron | 50.0% | |
| GCAGTCGTTTAATAACCCGG+AGG | - | chr4_3:36308277-36308296 | Msa0639670:intron | 50.0% | |
| GACAAGGGAGAAAGGGTCTT+CGG | - | chr4_3:36308628-36308647 | Msa0639670:intron | 50.0% | |
| ACAAGGGAGAAAGGGTCTTC+GGG | - | chr4_3:36308629-36308648 | Msa0639670:intron | 50.0% | |
| TCGAAGAGGATTATCTCCCG+TGG | - | chr4_3:36308741-36308760 | Msa0639670:intron | 50.0% | |
| AAGAGGATTATCTCCCGTGG+AGG | - | chr4_3:36308744-36308763 | Msa0639670:intron | 50.0% | |
| TCTCCCGTGGAGGTAACTTA+TGG | - | chr4_3:36308754-36308773 | Msa0639670:intron | 50.0% | |
| CTCCCGTGGAGGTAACTTAT+GGG | - | chr4_3:36308755-36308774 | Msa0639670:intron | 50.0% | |
| AGGCAACTTTAGCGGAACCA+TGG | + | chr4_3:36309099-36309118 | None:intergenic | 50.0% | |
| ACTCATTGGGTCTTTCCAGC+AGG | + | chr4_3:36309119-36309138 | None:intergenic | 50.0% | |
| GGCTGGGGACTAACATTCTA+TGG | - | chr4_3:36309313-36309332 | Msa0639670:intron | 50.0% | |
| ATCATGGCCTCTCTCGTACG+CGG | - | chr4_3:36308327-36308346 | Msa0639670:intron | 55.0% | |
| ! | CGGCGGTGGATGAGTTGAAT+GGG | + | chr4_3:36308396-36308415 | None:intergenic | 55.0% |
| ! | ACGGCGGTGGATGAGTTGAA+TGG | + | chr4_3:36308397-36308416 | None:intergenic | 55.0% |
| ATTCAACTCATCCACCGCCG+TGG | - | chr4_3:36308396-36308415 | Msa0639670:intron | 55.0% | |
| GTGTCTGACACGTCTCGAAG+AGG | - | chr4_3:36308727-36308746 | Msa0639670:intron | 55.0% | |
| GTTCCGCTAAAGTTGCCTGC+TGG | - | chr4_3:36309101-36309120 | Msa0639670:intron | 55.0% | |
| ATCATGGCCTCTCTCGTACG+CGG | - | chr4_3:36308327-36308346 | Msa0639670:intron | 55.0% | |
| ! | CGGCGGTGGATGAGTTGAAT+GGG | + | chr4_3:36308396-36308415 | None:intergenic | 55.0% |
| ! | ACGGCGGTGGATGAGTTGAA+TGG | + | chr4_3:36308397-36308416 | None:intergenic | 55.0% |
| ATTCAACTCATCCACCGCCG+TGG | - | chr4_3:36308396-36308415 | Msa0639670:intron | 55.0% | |
| GTGTCTGACACGTCTCGAAG+AGG | - | chr4_3:36308727-36308746 | Msa0639670:intron | 55.0% | |
| GTTCCGCTAAAGTTGCCTGC+TGG | - | chr4_3:36309101-36309120 | Msa0639670:intron | 55.0% | |
| AAGAACCTGCAGCTGCGGAG+AGG | + | chr4_3:36308422-36308441 | None:intergenic | 60.0% | |
| AGGGAGAAAGGGTCTTCGGG+TGG | - | chr4_3:36308632-36308651 | Msa0639670:intron | 60.0% | |
| AAGAACCTGCAGCTGCGGAG+AGG | + | chr4_3:36308422-36308441 | None:intergenic | 60.0% | |
| AGGGAGAAAGGGTCTTCGGG+TGG | - | chr4_3:36308632-36308651 | Msa0639670:intron | 60.0% | |
| TGCGGCTCCGCGTACGAGAG+AGG | + | chr4_3:36308337-36308356 | None:intergenic | 70.0% | |
| CTGCAGCTGCGGAGAGGCCA+CGG | + | chr4_3:36308416-36308435 | None:intergenic | 70.0% | |
| TGCGGCTCCGCGTACGAGAG+AGG | + | chr4_3:36308337-36308356 | None:intergenic | 70.0% | |
| CTGCAGCTGCGGAGAGGCCA+CGG | + | chr4_3:36308416-36308435 | None:intergenic | 70.0% | |
| CAGCTGCGGAGAGGCCACGG+CGG | + | chr4_3:36308413-36308432 | None:intergenic | 75.0% | |
| CGTGGCCTCTCCGCAGCTGC+AGG | - | chr4_3:36308414-36308433 | Msa0639670:intron | 75.0% | |
| CAGCTGCGGAGAGGCCACGG+CGG | + | chr4_3:36308413-36308432 | None:intergenic | 75.0% | |
| CGTGGCCTCTCCGCAGCTGC+AGG | - | chr4_3:36308414-36308433 | Msa0639670:intron | 75.0% | |
| ! | CTGCGGAGAGGCCACGGCGG+TGG | + | chr4_3:36308410-36308429 | None:intergenic | 80.0% |
| ! | CTGCGGAGAGGCCACGGCGG+TGG | + | chr4_3:36308410-36308429 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 36308208 | 36309616 | 36308208 | ID=Msa0639670;Name=Msa0639670 |
| chr4_3 | mRNA | 36308208 | 36309616 | 36308208 | ID=Msa0639670-mRNA-1;Parent=Msa0639670;Name=Msa0639670-mRNA-1;_AED=0.31;_eAED=0.31;_QI=122|0.66|0.75|0.75|1|1|4|0|103 |
| chr4_3 | exon | 36308208 | 36308261 | 36308208 | ID=Msa0639670-mRNA-1:exon:8394;Parent=Msa0639670-mRNA-1 |
| chr4_3 | exon | 36308452 | 36308532 | 36308452 | ID=Msa0639670-mRNA-1:exon:8393;Parent=Msa0639670-mRNA-1 |
| chr4_3 | exon | 36308662 | 36308732 | 36308662 | ID=Msa0639670-mRNA-1:exon:8392;Parent=Msa0639670-mRNA-1 |
| chr4_3 | exon | 36309389 | 36309616 | 36309389 | ID=Msa0639670-mRNA-1:exon:8391;Parent=Msa0639670-mRNA-1 |
| chr4_3 | five_prime_UTR | 36309495 | 36309616 | 36309495 | ID=Msa0639670-mRNA-1:five_prime_utr;Parent=Msa0639670-mRNA-1 |
| chr4_3 | CDS | 36309389 | 36309494 | 36309389 | ID=Msa0639670-mRNA-1:cds;Parent=Msa0639670-mRNA-1 |
| chr4_3 | CDS | 36308662 | 36308732 | 36308662 | ID=Msa0639670-mRNA-1:cds;Parent=Msa0639670-mRNA-1 |
| chr4_3 | CDS | 36308452 | 36308532 | 36308452 | ID=Msa0639670-mRNA-1:cds;Parent=Msa0639670-mRNA-1 |
| chr4_3 | CDS | 36308208 | 36308261 | 36308208 | ID=Msa0639670-mRNA-1:cds;Parent=Msa0639670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
