Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598830 | XP_013455580.1 | 94.382 | 89 | 5 | 0 | 1 | 89 | 1 | 89 | 1.56e-54 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0433410 | Msa0598830 | 0.820626 | 6.211428e-53 | -8.615850e-47 |
| Msa0469940 | Msa0598830 | 0.819147 | 1.352904e-52 | -8.615850e-47 |
| Msa0532810 | Msa0598830 | 0.831953 | 1.245944e-55 | -8.615850e-47 |
| Msa0598830 | Msa0639670 | 0.865969 | 4.015839e-65 | -8.615850e-47 |
| Msa0598830 | Msa0768680 | 0.803722 | 3.043176e-49 | -8.615850e-47 |
| Msa0598830 | Msa0881210 | 0.825449 | 4.658584e-54 | -8.615850e-47 |
| Msa0598830 | Msa1144720 | 0.824991 | 5.979270e-54 | -8.615850e-47 |
| Msa0598830 | Msa1183100 | 0.811802 | 5.835003e-51 | -8.615850e-47 |
| Msa0598830 | Msa1202770 | 0.837992 | 3.745818e-57 | -8.615850e-47 |
| Msa0598830 | Msa1224580 | 0.820417 | 6.937180e-53 | -8.615850e-47 |
| Msa0598830 | Msa1254720 | 0.804695 | 1.909543e-49 | -8.615850e-47 |
| Msa0598830 | Msa1264860 | 0.806154 | 9.438902e-50 | -8.615850e-47 |
| Msa0598830 | Msa1295540 | 0.826624 | 2.448873e-54 | -8.615850e-47 |
| Msa0598830 | Msa1300110 | 0.804825 | 1.793851e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598830 | MtrunA17_Chr4g0022541 | 94.382 | 89 | 5 | 0 | 1 | 89 | 1 | 89 | 1.44e-58 | 174 |
| Msa0598830 | MtrunA17_Chr2g0318351 | 57.143 | 84 | 33 | 1 | 3 | 86 | 6 | 86 | 8.33e-32 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0598830 | AT2G20820.1 | 58.140 | 86 | 35 | 1 | 1 | 85 | 1 | 86 | 6.31e-29 | 100 |
| Msa0598830 | AT2G20820.2 | 50.000 | 62 | 30 | 1 | 1 | 61 | 1 | 62 | 1.98e-12 | 58.5 |
Find 44 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATCCTTACATACATAAAA+AGG | 0.236331 | 4_2:-36567891 | Msa0598830:five_prime_UTR |
| TTTGTGATTGTCTCTTTAAC+TGG | 0.238620 | 4_2:-36566843 | Msa0598830:CDS |
| ACCCAATGAGTCCTTCTAAA+TGG | 0.292979 | 4_2:-36567007 | Msa0598830:CDS |
| AGAAGTTTCCCAGACAATTA+TGG | 0.293054 | 4_2:+36566562 | None:intergenic |
| GGCTGGGGACTAACATTCTA+TGG | 0.313459 | 4_2:-36566822 | Msa0598830:CDS |
| TGCTCTTCCTTCCATTTAGA+AGG | 0.313496 | 4_2:+36566996 | None:intergenic |
| TGATTGTCTCTTTAACTGGC+TGG | 0.342484 | 4_2:-36566839 | Msa0598830:CDS |
| TTCCATTTAGAAGGACTCAT+TGG | 0.371713 | 4_2:+36567005 | None:intergenic |
| ACAATATATCCATAATTGTC+TGG | 0.382043 | 4_2:-36566571 | Msa0598830:CDS |
| GATGAGTTGAATGGGAGATT+TGG | 0.382911 | 4_2:+36567750 | None:intergenic |
| CGTGGCCTCTCCGCAGCTGC+AGG | 0.383883 | 4_2:-36567721 | Msa0598830:intron |
| CTGCGGAGAGGCCACGGCGG+TGG | 0.416853 | 4_2:+36567728 | None:intergenic |
| GATCAATCAAGTGGGTGTAT+TGG | 0.432503 | 4_2:+36567909 | None:intergenic |
| CTGCAGCTGCGGAGAGGCCA+CGG | 0.454721 | 4_2:+36567722 | None:intergenic |
| TTCAGAGAAATGATGTCCTC+CGG | 0.460602 | 4_2:+36567842 | None:intergenic |
| ACGGCGGTGGATGAGTTGAA+TGG | 0.461675 | 4_2:+36567741 | None:intergenic |
| CTGAAGCTCGATAGCAATCA+TGG | 0.466881 | 4_2:-36567824 | Msa0598830:exon |
| TCCATTTAGAAGGACTCATT+GGG | 0.472687 | 4_2:+36567006 | None:intergenic |
| CGGCGGTGGATGAGTTGAAT+GGG | 0.484723 | 4_2:+36567742 | None:intergenic |
| GATTGTCTCTTTAACTGGCT+GGG | 0.485266 | 4_2:-36566838 | Msa0598830:CDS |
| TTGAATGGGAGATTTGGAAG+AGG | 0.488798 | 4_2:+36567756 | None:intergenic |
| ACTCATTGGGTCTTTCCAGC+AGG | 0.521627 | 4_2:+36567019 | None:intergenic |
| ATTGTCTCTTTAACTGGCTG+GGG | 0.524474 | 4_2:-36566837 | Msa0598830:CDS |
| CAATATATCCATAATTGTCT+GGG | 0.530312 | 4_2:-36566570 | Msa0598830:CDS |
| TTTCCAGCAGGCAACTTTAG+CGG | 0.538012 | 4_2:+36567031 | None:intergenic |
| GCTGGGGACTAACATTCTAT+GGG | 0.545264 | 4_2:-36566821 | Msa0598830:CDS |
| GTTCCGCTAAAGTTGCCTGC+TGG | 0.548596 | 4_2:-36567034 | Msa0598830:CDS |
| AATGAGTCCTTCTAAATGGA+AGG | 0.562278 | 4_2:-36567003 | Msa0598830:CDS |
| TCAGAGAAATGATGTCCTCC+GGG | 0.578637 | 4_2:+36567843 | None:intergenic |
| TTCAGGAGGCAAGAAAGAAG+AGG | 0.592752 | 4_2:-36566784 | Msa0598830:intron |
| TGCGGCTCCGCGTACGAGAG+AGG | 0.592826 | 4_2:+36567801 | None:intergenic |
| TACGCAGTCGTTTAATAACC+CGG | 0.620625 | 4_2:-36567861 | Msa0598830:five_prime_UTR |
| TATGTAAGGATCAATCAAGT+GGG | 0.641376 | 4_2:+36567901 | None:intergenic |
| AGGCAACTTTAGCGGAACCA+TGG | 0.643716 | 4_2:+36567039 | None:intergenic |
| ATTCAACTCATCCACCGCCG+TGG | 0.648831 | 4_2:-36567739 | Msa0598830:CDS |
| ATCATGGCCTCTCTCGTACG+CGG | 0.653998 | 4_2:-36567808 | Msa0598830:CDS |
| GTATGTAAGGATCAATCAAG+TGG | 0.655046 | 4_2:+36567900 | None:intergenic |
| TTGATTATTGCAGATCACCA+TGG | 0.656234 | 4_2:-36567056 | Msa0598830:intron |
| AAGAACCTGCAGCTGCGGAG+AGG | 0.667295 | 4_2:+36567716 | None:intergenic |
| CTGGGGACTAACATTCTATG+GGG | 0.689871 | 4_2:-36566820 | Msa0598830:CDS |
| CAGCTGCGGAGAGGCCACGG+CGG | 0.706800 | 4_2:+36567725 | None:intergenic |
| TGGGGACTAACATTCTATGG+GGG | 0.723176 | 4_2:-36566819 | Msa0598830:CDS |
| AGTGATGCGAGTTAGAGATG+CGG | 0.731219 | 4_2:+36567783 | None:intergenic |
| GCAGTCGTTTAATAACCCGG+AGG | 0.826193 | 4_2:-36567858 | Msa0598830:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATCTTGTTTACATATT+TGG | - | chr4_2:36567239-36567258 | Msa0598830:intron | 15.0% |
| !!! | TTAAATCTTGTTTACATATT+TGG | - | chr4_2:36567239-36567258 | Msa0598830:intron | 15.0% |
| !! | TGATTAAGTAAATAGAGAAA+TGG | + | chr4_2:36566782-36566801 | None:intergenic | 20.0% |
| !! | ATATTAGCTATTAAATGACA+AGG | - | chr4_2:36566945-36566964 | Msa0598830:intron | 20.0% |
| !! | TATTAGCTATTAAATGACAA+GGG | - | chr4_2:36566946-36566965 | Msa0598830:intron | 20.0% |
| !!! | CAATTTTGATATATGTGAAA+TGG | - | chr4_2:36567380-36567399 | Msa0598830:intron | 20.0% |
| !!! | TGTTATTTTTTACATTGAGA+TGG | - | chr4_2:36567545-36567564 | Msa0598830:intron | 20.0% |
| !! | TGATTAAGTAAATAGAGAAA+TGG | + | chr4_2:36566782-36566801 | None:intergenic | 20.0% |
| !! | ATATTAGCTATTAAATGACA+AGG | - | chr4_2:36566945-36566964 | Msa0598830:intron | 20.0% |
| !! | TATTAGCTATTAAATGACAA+GGG | - | chr4_2:36566946-36566965 | Msa0598830:intron | 20.0% |
| !!! | CAATTTTGATATATGTGAAA+TGG | - | chr4_2:36567380-36567399 | Msa0598830:intron | 20.0% |
| !!! | TGTTATTTTTTACATTGAGA+TGG | - | chr4_2:36567545-36567564 | Msa0598830:intron | 20.0% |
| ! | TGATCCTTACATACATAAAA+AGG | - | chr4_2:36566577-36566596 | Msa0598830:intron | 25.0% |
| !! | TAAGCCTTTTTATGTATGTA+AGG | + | chr4_2:36566584-36566603 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGGATAGATTAA+TGG | - | chr4_2:36567285-36567304 | Msa0598830:intron | 25.0% |
| !!! | ATTAATGGACTAATGATACA+AGG | - | chr4_2:36567300-36567319 | Msa0598830:intron | 25.0% |
| !!! | ATTTTTTACATTGAGATGGT+TGG | - | chr4_2:36567549-36567568 | Msa0598830:intron | 25.0% |
| !!! | ATATTCTTTTGAGTTTTGTC+TGG | - | chr4_2:36567585-36567604 | Msa0598830:intron | 25.0% |
| ! | ACAATATATCCATAATTGTC+TGG | - | chr4_2:36567897-36567916 | Msa0598830:five_prime_UTR | 25.0% |
| ! | CAATATATCCATAATTGTCT+GGG | - | chr4_2:36567898-36567917 | Msa0598830:five_prime_UTR | 25.0% |
| ! | TGATCCTTACATACATAAAA+AGG | - | chr4_2:36566577-36566596 | Msa0598830:intron | 25.0% |
| !! | TAAGCCTTTTTATGTATGTA+AGG | + | chr4_2:36566584-36566603 | None:intergenic | 25.0% |
| !!! | TTTGGTTTTGGATAGATTAA+TGG | - | chr4_2:36567285-36567304 | Msa0598830:intron | 25.0% |
| !!! | ATTAATGGACTAATGATACA+AGG | - | chr4_2:36567300-36567319 | Msa0598830:intron | 25.0% |
| !!! | ATTTTTTACATTGAGATGGT+TGG | - | chr4_2:36567549-36567568 | Msa0598830:intron | 25.0% |
| !!! | ATATTCTTTTGAGTTTTGTC+TGG | - | chr4_2:36567585-36567604 | Msa0598830:intron | 25.0% |
| ! | ACAATATATCCATAATTGTC+TGG | - | chr4_2:36567897-36567916 | Msa0598830:five_prime_UTR | 25.0% |
| ! | CAATATATCCATAATTGTCT+GGG | - | chr4_2:36567898-36567917 | Msa0598830:five_prime_UTR | 25.0% |
| TATGTAAGGATCAATCAAGT+GGG | + | chr4_2:36566570-36566589 | None:intergenic | 30.0% | |
| TATTAAATGACAAGGGAGAA+AGG | - | chr4_2:36566953-36566972 | Msa0598830:intron | 30.0% | |
| ATTAAATGACAAGGGAGAAA+GGG | - | chr4_2:36566954-36566973 | Msa0598830:intron | 30.0% | |
| GAGAGCTTAATGTTTATCAA+TGG | - | chr4_2:36566995-36567014 | Msa0598830:CDS | 30.0% | |
| ATGTTTATCAATGGCGAATA+AGG | - | chr4_2:36567004-36567023 | Msa0598830:CDS | 30.0% | |
| TTAAAGAGACAATCACAAAC+TGG | + | chr4_2:36567624-36567643 | None:intergenic | 30.0% | |
| TTTGTGATTGTCTCTTTAAC+TGG | - | chr4_2:36567625-36567644 | Msa0598830:intron | 30.0% | |
| AAGTCAGCTATAATCAAACA+AGG | + | chr4_2:36567794-36567813 | None:intergenic | 30.0% | |
| ! | ATCCATGCACTATTTTACAA+CGG | + | chr4_2:36567853-36567872 | None:intergenic | 30.0% |
| TATGTAAGGATCAATCAAGT+GGG | + | chr4_2:36566570-36566589 | None:intergenic | 30.0% | |
| TATTAAATGACAAGGGAGAA+AGG | - | chr4_2:36566953-36566972 | Msa0598830:intron | 30.0% | |
| ATTAAATGACAAGGGAGAAA+GGG | - | chr4_2:36566954-36566973 | Msa0598830:intron | 30.0% | |
| GAGAGCTTAATGTTTATCAA+TGG | - | chr4_2:36566995-36567014 | Msa0598830:CDS | 30.0% | |
| ATGTTTATCAATGGCGAATA+AGG | - | chr4_2:36567004-36567023 | Msa0598830:CDS | 30.0% | |
| TTAAAGAGACAATCACAAAC+TGG | + | chr4_2:36567624-36567643 | None:intergenic | 30.0% | |
| TTTGTGATTGTCTCTTTAAC+TGG | - | chr4_2:36567625-36567644 | Msa0598830:intron | 30.0% | |
| AAGTCAGCTATAATCAAACA+AGG | + | chr4_2:36567794-36567813 | None:intergenic | 30.0% | |
| ! | ATCCATGCACTATTTTACAA+CGG | + | chr4_2:36567853-36567872 | None:intergenic | 30.0% |
| GTATGTAAGGATCAATCAAG+TGG | + | chr4_2:36566571-36566590 | None:intergenic | 35.0% | |
| CATGGATTTGGATTTGGATT+TGG | + | chr4_2:36566816-36566835 | None:intergenic | 35.0% | |
| TTCAGACATGGATTTGGATT+TGG | + | chr4_2:36566822-36566841 | None:intergenic | 35.0% | |
| ATCCAAATCCATGTCTGAAT+TGG | - | chr4_2:36566823-36566842 | Msa0598830:CDS | 35.0% | |
| TTCCAATTCAGACATGGATT+TGG | + | chr4_2:36566828-36566847 | None:intergenic | 35.0% | |
| AGCTTATTCCAATTCAGACA+TGG | + | chr4_2:36566834-36566853 | None:intergenic | 35.0% | |
| GTTTCGAATTGTTCTGTGAT+TGG | - | chr4_2:36566880-36566899 | Msa0598830:intron | 35.0% | |
| TATCAATGGCGAATAAGGTT+TGG | - | chr4_2:36567009-36567028 | Msa0598830:CDS | 35.0% | |
| AAACATTACAACAGACTGAG+TGG | - | chr4_2:36567140-36567159 | Msa0598830:intron | 35.0% | |
| GGATGCTTCAACTTATGATA+TGG | - | chr4_2:36567194-36567213 | Msa0598830:intron | 35.0% | |
| ! | TTCGAACAAGCAATTGACTT+TGG | - | chr4_2:36567267-36567286 | Msa0598830:intron | 35.0% |
| !! | CAAGCAATTGACTTTGGTTT+TGG | - | chr4_2:36567273-36567292 | Msa0598830:intron | 35.0% |
| TACAAGGACGAATAGATGTT+TGG | - | chr4_2:36567316-36567335 | Msa0598830:intron | 35.0% | |
| TTGATTATTGCAGATCACCA+TGG | - | chr4_2:36567412-36567431 | Msa0598830:intron | 35.0% | |
| TCCATTTAGAAGGACTCATT+GGG | + | chr4_2:36567465-36567484 | None:intergenic | 35.0% | |
| TTCCATTTAGAAGGACTCAT+TGG | + | chr4_2:36567466-36567485 | None:intergenic | 35.0% | |
| AATGAGTCCTTCTAAATGGA+AGG | - | chr4_2:36567465-36567484 | Msa0598830:intron | 35.0% | |
| !! | GGATACAAGTTATTTTCAGG+AGG | - | chr4_2:36567670-36567689 | Msa0598830:intron | 35.0% |
| ATACCGTATTTATTAGCTCG+TGG | - | chr4_2:36567743-36567762 | Msa0598830:CDS | 35.0% | |
| TAGCCACGAGCTAATAAATA+CGG | + | chr4_2:36567749-36567768 | None:intergenic | 35.0% | |
| TGGATATATTGTCCTGTACA+TGG | + | chr4_2:36567889-36567908 | None:intergenic | 35.0% | |
| AGAAGTTTCCCAGACAATTA+TGG | + | chr4_2:36567909-36567928 | None:intergenic | 35.0% | |
| TTCATGTGTAGATGAAGTGT+AGG | - | chr4_2:36567928-36567947 | Msa0598830:five_prime_UTR | 35.0% | |
| GTATGTAAGGATCAATCAAG+TGG | + | chr4_2:36566571-36566590 | None:intergenic | 35.0% | |
| CATGGATTTGGATTTGGATT+TGG | + | chr4_2:36566816-36566835 | None:intergenic | 35.0% | |
| TTCAGACATGGATTTGGATT+TGG | + | chr4_2:36566822-36566841 | None:intergenic | 35.0% | |
| ATCCAAATCCATGTCTGAAT+TGG | - | chr4_2:36566823-36566842 | Msa0598830:CDS | 35.0% | |
| TTCCAATTCAGACATGGATT+TGG | + | chr4_2:36566828-36566847 | None:intergenic | 35.0% | |
| AGCTTATTCCAATTCAGACA+TGG | + | chr4_2:36566834-36566853 | None:intergenic | 35.0% | |
| GTTTCGAATTGTTCTGTGAT+TGG | - | chr4_2:36566880-36566899 | Msa0598830:intron | 35.0% | |
| TATCAATGGCGAATAAGGTT+TGG | - | chr4_2:36567009-36567028 | Msa0598830:CDS | 35.0% | |
| AAACATTACAACAGACTGAG+TGG | - | chr4_2:36567140-36567159 | Msa0598830:intron | 35.0% | |
| GGATGCTTCAACTTATGATA+TGG | - | chr4_2:36567194-36567213 | Msa0598830:intron | 35.0% | |
| ! | TTCGAACAAGCAATTGACTT+TGG | - | chr4_2:36567267-36567286 | Msa0598830:intron | 35.0% |
| !! | CAAGCAATTGACTTTGGTTT+TGG | - | chr4_2:36567273-36567292 | Msa0598830:intron | 35.0% |
| TACAAGGACGAATAGATGTT+TGG | - | chr4_2:36567316-36567335 | Msa0598830:intron | 35.0% | |
| TTGATTATTGCAGATCACCA+TGG | - | chr4_2:36567412-36567431 | Msa0598830:intron | 35.0% | |
| TCCATTTAGAAGGACTCATT+GGG | + | chr4_2:36567465-36567484 | None:intergenic | 35.0% | |
| TTCCATTTAGAAGGACTCAT+TGG | + | chr4_2:36567466-36567485 | None:intergenic | 35.0% | |
| AATGAGTCCTTCTAAATGGA+AGG | - | chr4_2:36567465-36567484 | Msa0598830:intron | 35.0% | |
| !! | GGATACAAGTTATTTTCAGG+AGG | - | chr4_2:36567670-36567689 | Msa0598830:intron | 35.0% |
| ATACCGTATTTATTAGCTCG+TGG | - | chr4_2:36567743-36567762 | Msa0598830:CDS | 35.0% | |
| TAGCCACGAGCTAATAAATA+CGG | + | chr4_2:36567749-36567768 | None:intergenic | 35.0% | |
| TGGATATATTGTCCTGTACA+TGG | + | chr4_2:36567889-36567908 | None:intergenic | 35.0% | |
| AGAAGTTTCCCAGACAATTA+TGG | + | chr4_2:36567909-36567928 | None:intergenic | 35.0% | |
| GATCAATCAAGTGGGTGTAT+TGG | + | chr4_2:36566562-36566581 | None:intergenic | 40.0% | |
| TACGCAGTCGTTTAATAACC+CGG | - | chr4_2:36566607-36566626 | Msa0598830:intron | 40.0% | |
| TTCAGAGAAATGATGTCCTC+CGG | + | chr4_2:36566629-36566648 | None:intergenic | 40.0% | |
| TTGAATGGGAGATTTGGAAG+AGG | + | chr4_2:36566715-36566734 | None:intergenic | 40.0% | |
| ! | GATGAGTTGAATGGGAGATT+TGG | + | chr4_2:36566721-36566740 | None:intergenic | 40.0% |
| GGCGAATAAGGTTTGGATTT+CGG | - | chr4_2:36567016-36567035 | Msa0598830:CDS | 40.0% | |
| ATAAGGTTTGGATTTCGGCT+AGG | - | chr4_2:36567021-36567040 | Msa0598830:CDS | 40.0% | |
| TTTCCCATAAGTTACCTCCA+CGG | + | chr4_2:36567094-36567113 | None:intergenic | 40.0% | |
| TACAACAGACTGAGTGGAAT+TGG | - | chr4_2:36567146-36567165 | Msa0598830:intron | 40.0% | |
| GAATCTGTTCAGCATAGTCA+TGG | - | chr4_2:36567173-36567192 | Msa0598830:intron | 40.0% | |
| ACCCAATGAGTCCTTCTAAA+TGG | - | chr4_2:36567461-36567480 | Msa0598830:intron | 40.0% | |
| TGCTCTTCCTTCCATTTAGA+AGG | + | chr4_2:36567475-36567494 | None:intergenic | 40.0% | |
| AAGAGACAATCACAAACTGG+AGG | + | chr4_2:36567621-36567640 | None:intergenic | 40.0% | |
| TGATTGTCTCTTTAACTGGC+TGG | - | chr4_2:36567629-36567648 | Msa0598830:intron | 40.0% | |
| GATTGTCTCTTTAACTGGCT+GGG | - | chr4_2:36567630-36567649 | Msa0598830:intron | 40.0% | |
| ATTGTCTCTTTAACTGGCTG+GGG | - | chr4_2:36567631-36567650 | Msa0598830:intron | 40.0% | |
| !! | GGGGGATACAAGTTATTTTC+AGG | - | chr4_2:36567667-36567686 | Msa0598830:intron | 40.0% |
| TTAGTTCCTTGACCATGTAC+AGG | - | chr4_2:36567874-36567893 | Msa0598830:five_prime_UTR | 40.0% | |
| TATTGTCCTGTACATGGTCA+AGG | + | chr4_2:36567883-36567902 | None:intergenic | 40.0% | |
| GATCAATCAAGTGGGTGTAT+TGG | + | chr4_2:36566562-36566581 | None:intergenic | 40.0% | |
| TACGCAGTCGTTTAATAACC+CGG | - | chr4_2:36566607-36566626 | Msa0598830:intron | 40.0% | |
| TTCAGAGAAATGATGTCCTC+CGG | + | chr4_2:36566629-36566648 | None:intergenic | 40.0% | |
| TTGAATGGGAGATTTGGAAG+AGG | + | chr4_2:36566715-36566734 | None:intergenic | 40.0% | |
| ! | GATGAGTTGAATGGGAGATT+TGG | + | chr4_2:36566721-36566740 | None:intergenic | 40.0% |
| GGCGAATAAGGTTTGGATTT+CGG | - | chr4_2:36567016-36567035 | Msa0598830:CDS | 40.0% | |
| ATAAGGTTTGGATTTCGGCT+AGG | - | chr4_2:36567021-36567040 | Msa0598830:CDS | 40.0% | |
| TTTCCCATAAGTTACCTCCA+CGG | + | chr4_2:36567094-36567113 | None:intergenic | 40.0% | |
| TACAACAGACTGAGTGGAAT+TGG | - | chr4_2:36567146-36567165 | Msa0598830:intron | 40.0% | |
| GAATCTGTTCAGCATAGTCA+TGG | - | chr4_2:36567173-36567192 | Msa0598830:intron | 40.0% | |
| ACCCAATGAGTCCTTCTAAA+TGG | - | chr4_2:36567461-36567480 | Msa0598830:intron | 40.0% | |
| TGCTCTTCCTTCCATTTAGA+AGG | + | chr4_2:36567475-36567494 | None:intergenic | 40.0% | |
| AAGAGACAATCACAAACTGG+AGG | + | chr4_2:36567621-36567640 | None:intergenic | 40.0% | |
| TGATTGTCTCTTTAACTGGC+TGG | - | chr4_2:36567629-36567648 | Msa0598830:intron | 40.0% | |
| GATTGTCTCTTTAACTGGCT+GGG | - | chr4_2:36567630-36567649 | Msa0598830:intron | 40.0% | |
| ATTGTCTCTTTAACTGGCTG+GGG | - | chr4_2:36567631-36567650 | Msa0598830:intron | 40.0% | |
| !! | GGGGGATACAAGTTATTTTC+AGG | - | chr4_2:36567667-36567686 | Msa0598830:intron | 40.0% |
| TTAGTTCCTTGACCATGTAC+AGG | - | chr4_2:36567874-36567893 | Msa0598830:five_prime_UTR | 40.0% | |
| TATTGTCCTGTACATGGTCA+AGG | + | chr4_2:36567883-36567902 | None:intergenic | 40.0% | |
| TCAGAGAAATGATGTCCTCC+GGG | + | chr4_2:36566628-36566647 | None:intergenic | 45.0% | |
| CTGAAGCTCGATAGCAATCA+TGG | - | chr4_2:36566644-36566663 | Msa0598830:intron | 45.0% | |
| AGTGATGCGAGTTAGAGATG+CGG | + | chr4_2:36566688-36566707 | None:intergenic | 45.0% | |
| GAAAAAAGAACCTGCAGCTG+CGG | + | chr4_2:36566760-36566779 | None:intergenic | 45.0% | |
| TTCCCATAAGTTACCTCCAC+GGG | + | chr4_2:36567093-36567112 | None:intergenic | 45.0% | |
| TTTCCAGCAGGCAACTTTAG+CGG | + | chr4_2:36567440-36567459 | None:intergenic | 45.0% | |
| GCTGGGGACTAACATTCTAT+GGG | - | chr4_2:36567647-36567666 | Msa0598830:intron | 45.0% | |
| CTGGGGACTAACATTCTATG+GGG | - | chr4_2:36567648-36567667 | Msa0598830:intron | 45.0% | |
| TGGGGACTAACATTCTATGG+GGG | - | chr4_2:36567649-36567668 | Msa0598830:intron | 45.0% | |
| TTCAGGAGGCAAGAAAGAAG+AGG | - | chr4_2:36567684-36567703 | Msa0598830:intron | 45.0% | |
| CGCCGTTGTAAAATAGTGCA+TGG | - | chr4_2:36567848-36567867 | Msa0598830:five_prime_UTR | 45.0% | |
| TCAGAGAAATGATGTCCTCC+GGG | + | chr4_2:36566628-36566647 | None:intergenic | 45.0% | |
| CTGAAGCTCGATAGCAATCA+TGG | - | chr4_2:36566644-36566663 | Msa0598830:intron | 45.0% | |
| AGTGATGCGAGTTAGAGATG+CGG | + | chr4_2:36566688-36566707 | None:intergenic | 45.0% | |
| GAAAAAAGAACCTGCAGCTG+CGG | + | chr4_2:36566760-36566779 | None:intergenic | 45.0% | |
| TTCCCATAAGTTACCTCCAC+GGG | + | chr4_2:36567093-36567112 | None:intergenic | 45.0% | |
| TTTCCAGCAGGCAACTTTAG+CGG | + | chr4_2:36567440-36567459 | None:intergenic | 45.0% | |
| GCTGGGGACTAACATTCTAT+GGG | - | chr4_2:36567647-36567666 | Msa0598830:intron | 45.0% | |
| CTGGGGACTAACATTCTATG+GGG | - | chr4_2:36567648-36567667 | Msa0598830:intron | 45.0% | |
| TGGGGACTAACATTCTATGG+GGG | - | chr4_2:36567649-36567668 | Msa0598830:intron | 45.0% | |
| TTCAGGAGGCAAGAAAGAAG+AGG | - | chr4_2:36567684-36567703 | Msa0598830:intron | 45.0% | |
| CGCCGTTGTAAAATAGTGCA+TGG | - | chr4_2:36567848-36567867 | Msa0598830:five_prime_UTR | 45.0% | |
| GCAGTCGTTTAATAACCCGG+AGG | - | chr4_2:36566610-36566629 | Msa0598830:intron | 50.0% | |
| GACAAGGGAGAAAGGGTCTT+CGG | - | chr4_2:36566961-36566980 | Msa0598830:intron | 50.0% | |
| ACAAGGGAGAAAGGGTCTTC+GGG | - | chr4_2:36566962-36566981 | Msa0598830:intron | 50.0% | |
| TCGAAGAGGATTATCTCCCG+TGG | - | chr4_2:36567074-36567093 | Msa0598830:intron | 50.0% | |
| AAGAGGATTATCTCCCGTGG+AGG | - | chr4_2:36567077-36567096 | Msa0598830:intron | 50.0% | |
| TCTCCCGTGGAGGTAACTTA+TGG | - | chr4_2:36567087-36567106 | Msa0598830:intron | 50.0% | |
| CTCCCGTGGAGGTAACTTAT+GGG | - | chr4_2:36567088-36567107 | Msa0598830:intron | 50.0% | |
| AGGCAACTTTAGCGGAACCA+TGG | + | chr4_2:36567432-36567451 | None:intergenic | 50.0% | |
| ACTCATTGGGTCTTTCCAGC+AGG | + | chr4_2:36567452-36567471 | None:intergenic | 50.0% | |
| GGCTGGGGACTAACATTCTA+TGG | - | chr4_2:36567646-36567665 | Msa0598830:intron | 50.0% | |
| GCAGTCGTTTAATAACCCGG+AGG | - | chr4_2:36566610-36566629 | Msa0598830:intron | 50.0% | |
| GACAAGGGAGAAAGGGTCTT+CGG | - | chr4_2:36566961-36566980 | Msa0598830:intron | 50.0% | |
| ACAAGGGAGAAAGGGTCTTC+GGG | - | chr4_2:36566962-36566981 | Msa0598830:intron | 50.0% | |
| TCGAAGAGGATTATCTCCCG+TGG | - | chr4_2:36567074-36567093 | Msa0598830:intron | 50.0% | |
| AAGAGGATTATCTCCCGTGG+AGG | - | chr4_2:36567077-36567096 | Msa0598830:intron | 50.0% | |
| TCTCCCGTGGAGGTAACTTA+TGG | - | chr4_2:36567087-36567106 | Msa0598830:intron | 50.0% | |
| CTCCCGTGGAGGTAACTTAT+GGG | - | chr4_2:36567088-36567107 | Msa0598830:intron | 50.0% | |
| AGGCAACTTTAGCGGAACCA+TGG | + | chr4_2:36567432-36567451 | None:intergenic | 50.0% | |
| ACTCATTGGGTCTTTCCAGC+AGG | + | chr4_2:36567452-36567471 | None:intergenic | 50.0% | |
| GGCTGGGGACTAACATTCTA+TGG | - | chr4_2:36567646-36567665 | Msa0598830:intron | 50.0% | |
| ATCATGGCCTCTCTCGTACG+CGG | - | chr4_2:36566660-36566679 | Msa0598830:intron | 55.0% | |
| ! | CGGCGGTGGATGAGTTGAAT+GGG | + | chr4_2:36566729-36566748 | None:intergenic | 55.0% |
| ! | ACGGCGGTGGATGAGTTGAA+TGG | + | chr4_2:36566730-36566749 | None:intergenic | 55.0% |
| ATTCAACTCATCCACCGCCG+TGG | - | chr4_2:36566729-36566748 | Msa0598830:intron | 55.0% | |
| GTGTCTGACACGTCTCGAAG+AGG | - | chr4_2:36567060-36567079 | Msa0598830:intron | 55.0% | |
| GTTCCGCTAAAGTTGCCTGC+TGG | - | chr4_2:36567434-36567453 | Msa0598830:intron | 55.0% | |
| ATCATGGCCTCTCTCGTACG+CGG | - | chr4_2:36566660-36566679 | Msa0598830:intron | 55.0% | |
| ! | CGGCGGTGGATGAGTTGAAT+GGG | + | chr4_2:36566729-36566748 | None:intergenic | 55.0% |
| ! | ACGGCGGTGGATGAGTTGAA+TGG | + | chr4_2:36566730-36566749 | None:intergenic | 55.0% |
| ATTCAACTCATCCACCGCCG+TGG | - | chr4_2:36566729-36566748 | Msa0598830:intron | 55.0% | |
| GTGTCTGACACGTCTCGAAG+AGG | - | chr4_2:36567060-36567079 | Msa0598830:intron | 55.0% | |
| GTTCCGCTAAAGTTGCCTGC+TGG | - | chr4_2:36567434-36567453 | Msa0598830:intron | 55.0% | |
| AAGAACCTGCAGCTGCGGAG+AGG | + | chr4_2:36566755-36566774 | None:intergenic | 60.0% | |
| AGGGAGAAAGGGTCTTCGGG+TGG | - | chr4_2:36566965-36566984 | Msa0598830:intron | 60.0% | |
| AAGAACCTGCAGCTGCGGAG+AGG | + | chr4_2:36566755-36566774 | None:intergenic | 60.0% | |
| AGGGAGAAAGGGTCTTCGGG+TGG | - | chr4_2:36566965-36566984 | Msa0598830:intron | 60.0% | |
| TGCGGCTCCGCGTACGAGAG+AGG | + | chr4_2:36566670-36566689 | None:intergenic | 70.0% | |
| CTGCAGCTGCGGAGAGGCCA+CGG | + | chr4_2:36566749-36566768 | None:intergenic | 70.0% | |
| TGCGGCTCCGCGTACGAGAG+AGG | + | chr4_2:36566670-36566689 | None:intergenic | 70.0% | |
| CTGCAGCTGCGGAGAGGCCA+CGG | + | chr4_2:36566749-36566768 | None:intergenic | 70.0% | |
| CAGCTGCGGAGAGGCCACGG+CGG | + | chr4_2:36566746-36566765 | None:intergenic | 75.0% | |
| CGTGGCCTCTCCGCAGCTGC+AGG | - | chr4_2:36566747-36566766 | Msa0598830:intron | 75.0% | |
| CAGCTGCGGAGAGGCCACGG+CGG | + | chr4_2:36566746-36566765 | None:intergenic | 75.0% | |
| CGTGGCCTCTCCGCAGCTGC+AGG | - | chr4_2:36566747-36566766 | Msa0598830:intron | 75.0% | |
| ! | CTGCGGAGAGGCCACGGCGG+TGG | + | chr4_2:36566743-36566762 | None:intergenic | 80.0% |
| ! | CTGCGGAGAGGCCACGGCGG+TGG | + | chr4_2:36566743-36566762 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 36566541 | 36567949 | 36566541 | ID=Msa0598830;Name=Msa0598830 |
| chr4_2 | mRNA | 36566541 | 36567949 | 36566541 | ID=Msa0598830-mRNA-1;Parent=Msa0598830;Name=Msa0598830-mRNA-1;_AED=0.31;_eAED=0.31;_QI=122|0.66|0.75|0.75|1|1|4|0|103 |
| chr4_2 | exon | 36566541 | 36566594 | 36566541 | ID=Msa0598830-mRNA-1:exon:8286;Parent=Msa0598830-mRNA-1 |
| chr4_2 | exon | 36566785 | 36566865 | 36566785 | ID=Msa0598830-mRNA-1:exon:8285;Parent=Msa0598830-mRNA-1 |
| chr4_2 | exon | 36566995 | 36567065 | 36566995 | ID=Msa0598830-mRNA-1:exon:8284;Parent=Msa0598830-mRNA-1 |
| chr4_2 | exon | 36567722 | 36567949 | 36567722 | ID=Msa0598830-mRNA-1:exon:8283;Parent=Msa0598830-mRNA-1 |
| chr4_2 | five_prime_UTR | 36567828 | 36567949 | 36567828 | ID=Msa0598830-mRNA-1:five_prime_utr;Parent=Msa0598830-mRNA-1 |
| chr4_2 | CDS | 36567722 | 36567827 | 36567722 | ID=Msa0598830-mRNA-1:cds;Parent=Msa0598830-mRNA-1 |
| chr4_2 | CDS | 36566995 | 36567065 | 36566995 | ID=Msa0598830-mRNA-1:cds;Parent=Msa0598830-mRNA-1 |
| chr4_2 | CDS | 36566785 | 36566865 | 36566785 | ID=Msa0598830-mRNA-1:cds;Parent=Msa0598830-mRNA-1 |
| chr4_2 | CDS | 36566541 | 36566594 | 36566541 | ID=Msa0598830-mRNA-1:cds;Parent=Msa0598830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
