Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532810 | XP_003607087.1 | 100.000 | 38 | 0 | 0 | 1 | 38 | 1 | 38 | 1.95e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532810 | G7JL09 | 100.000 | 38 | 0 | 0 | 1 | 38 | 1 | 38 | 9.32e-17 | 76.6 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003300 | Msa0532810 | -0.826703 | 2.346024e-54 | -8.615850e-47 |
| Msa0011160 | Msa0532810 | -0.842820 | 2.047522e-58 | -8.615850e-47 |
| Msa0029000 | Msa0532810 | 0.821812 | 3.308764e-53 | -8.615850e-47 |
| Msa0029850 | Msa0532810 | -0.833899 | 4.090738e-56 | -8.615850e-47 |
| Msa0036920 | Msa0532810 | -0.812564 | 3.979338e-51 | -8.615850e-47 |
| Msa0050380 | Msa0532810 | -0.804199 | 2.422512e-49 | -8.615850e-47 |
| Msa0051200 | Msa0532810 | -0.816304 | 5.923952e-52 | -8.615850e-47 |
| Msa0051460 | Msa0532810 | -0.824721 | 6.921927e-54 | -8.615850e-47 |
| Msa0063000 | Msa0532810 | -0.818324 | 2.080161e-52 | -8.615850e-47 |
| Msa0075880 | Msa0532810 | -0.801489 | 8.789116e-49 | -8.615850e-47 |
| Msa0077180 | Msa0532810 | -0.806212 | 9.177461e-50 | -8.615850e-47 |
| Msa0094940 | Msa0532810 | 0.819541 | 1.100109e-52 | -8.615850e-47 |
| Msa0102120 | Msa0532810 | -0.817232 | 3.668578e-52 | -8.615850e-47 |
| Msa0117770 | Msa0532810 | -0.807686 | 4.477785e-50 | -8.615850e-47 |
| Msa0130970 | Msa0532810 | -0.821721 | 3.472513e-53 | -8.615850e-47 |
| Msa0143920 | Msa0532810 | -0.813073 | 3.078817e-51 | -8.615850e-47 |
| Msa0169820 | Msa0532810 | -0.836963 | 6.874654e-57 | -8.615850e-47 |
| Msa0178860 | Msa0532810 | 0.810141 | 1.336106e-50 | -8.615850e-47 |
| Msa0183010 | Msa0532810 | 0.836431 | 9.398588e-57 | -8.615850e-47 |
| Msa0199800 | Msa0532810 | 0.827011 | 1.979736e-54 | -8.615850e-47 |
| Msa0202880 | Msa0532810 | -0.803339 | 3.653757e-49 | -8.615850e-47 |
| Msa0207310 | Msa0532810 | 0.805979 | 1.027445e-49 | -8.615850e-47 |
| Msa0213040 | Msa0532810 | -0.801244 | 9.866676e-49 | -8.615850e-47 |
| Msa0223410 | Msa0532810 | 0.819813 | 9.534880e-53 | -8.615850e-47 |
| Msa0226620 | Msa0532810 | 0.836323 | 1.000678e-56 | -8.615850e-47 |
| Msa0230640 | Msa0532810 | 0.852053 | 5.941202e-61 | -8.615850e-47 |
| Msa0234440 | Msa0532810 | -0.835456 | 1.660770e-56 | -8.615850e-47 |
| Msa0365490 | Msa0532810 | -0.811191 | 7.919524e-51 | -8.615850e-47 |
| Msa0377610 | Msa0532810 | 0.844732 | 6.301969e-59 | -8.615850e-47 |
| Msa0381600 | Msa0532810 | 0.862088 | 6.489796e-64 | -8.615850e-47 |
| Msa0383400 | Msa0532810 | 0.801283 | 9.687212e-49 | -8.615850e-47 |
| Msa0383490 | Msa0532810 | 0.849145 | 3.902373e-60 | -8.615850e-47 |
| Msa0388540 | Msa0532810 | 0.835672 | 1.463881e-56 | -8.615850e-47 |
| Msa0389360 | Msa0532810 | -0.801035 | 1.088481e-48 | -8.615850e-47 |
| Msa0389810 | Msa0532810 | -0.802041 | 6.769980e-49 | -8.615850e-47 |
| Msa0392040 | Msa0532810 | 0.863254 | 2.837508e-64 | -8.615850e-47 |
| Msa0426820 | Msa0532810 | 0.853215 | 2.768113e-61 | -8.615850e-47 |
| Msa0433410 | Msa0532810 | 0.847541 | 1.083111e-59 | -8.615850e-47 |
| Msa0438050 | Msa0532810 | -0.833728 | 4.514717e-56 | -8.615850e-47 |
| Msa0443290 | Msa0532810 | -0.830041 | 3.670614e-55 | -8.615850e-47 |
| Msa0444750 | Msa0532810 | 0.836232 | 1.056005e-56 | -8.615850e-47 |
| Msa0457010 | Msa0532810 | -0.830289 | 3.192816e-55 | -8.615850e-47 |
| Msa0458440 | Msa0532810 | -0.806425 | 8.278155e-50 | -8.615850e-47 |
| Msa0465680 | Msa0532810 | 0.800193 | 1.616251e-48 | -8.615850e-47 |
| Msa0467740 | Msa0532810 | 0.869074 | 4.064089e-66 | -8.615850e-47 |
| Msa0469940 | Msa0532810 | 0.879394 | 1.291212e-69 | -8.615850e-47 |
| Msa0477130 | Msa0532810 | 0.824619 | 7.315828e-54 | -8.615850e-47 |
| Msa0478450 | Msa0532810 | 0.822782 | 1.970467e-53 | -8.615850e-47 |
| Msa0482190 | Msa0532810 | 0.840676 | 7.532518e-58 | -8.615850e-47 |
| Msa0260270 | Msa0532810 | 0.853701 | 2.007814e-61 | -8.615850e-47 |
| Msa0272730 | Msa0532810 | -0.826665 | 2.395245e-54 | -8.615850e-47 |
| Msa0292170 | Msa0532810 | -0.803352 | 3.631475e-49 | -8.615850e-47 |
| Msa0302580 | Msa0532810 | 0.804879 | 1.747930e-49 | -8.615850e-47 |
| Msa0304270 | Msa0532810 | 0.809030 | 2.314529e-50 | -8.615850e-47 |
| Msa0306210 | Msa0532810 | 0.826866 | 2.144031e-54 | -8.615850e-47 |
| Msa0330390 | Msa0532810 | -0.817001 | 4.134155e-52 | -8.615850e-47 |
| Msa0344690 | Msa0532810 | 0.861783 | 8.046112e-64 | -8.615850e-47 |
| Msa0350320 | Msa0532810 | 0.824925 | 6.195941e-54 | -8.615850e-47 |
| Msa0350870 | Msa0532810 | -0.813917 | 2.008301e-51 | -8.615850e-47 |
| Msa0354800 | Msa0532810 | 0.804110 | 2.527633e-49 | -8.615850e-47 |
| Msa0485500 | Msa0532810 | 0.836347 | 9.867543e-57 | -8.615850e-47 |
| Msa0490870 | Msa0532810 | -0.828723 | 7.673375e-55 | -8.615850e-47 |
| Msa0492840 | Msa0532810 | -0.814357 | 1.605632e-51 | -8.615850e-47 |
| Msa0498220 | Msa0532810 | -0.821733 | 3.451614e-53 | -8.615850e-47 |
| Msa0514130 | Msa0532810 | 0.864379 | 1.268498e-64 | -8.615850e-47 |
| Msa0521620 | Msa0532810 | -0.801263 | 9.779653e-49 | -8.615850e-47 |
| Msa0532810 | Msa0553460 | -0.826301 | 2.924878e-54 | -8.615850e-47 |
| Msa0532810 | Msa0555020 | -0.804533 | 2.063692e-49 | -8.615850e-47 |
| Msa0532810 | Msa0564510 | -0.832034 | 1.189958e-55 | -8.615850e-47 |
| Msa0532810 | Msa0574850 | -0.845796 | 3.247899e-59 | -8.615850e-47 |
| Msa0532810 | Msa0580000 | -0.814529 | 1.471148e-51 | -8.615850e-47 |
| Msa0532810 | Msa0585230 | -0.807154 | 5.804663e-50 | -8.615850e-47 |
| Msa0532810 | Msa0598830 | 0.831953 | 1.245944e-55 | -8.615850e-47 |
| Msa0532810 | Msa0598880 | 0.831636 | 1.492123e-55 | -8.615850e-47 |
| Msa0532810 | Msa0599890 | -0.820845 | 5.530662e-53 | -8.615850e-47 |
| Msa0532810 | Msa0607540 | -0.839651 | 1.394545e-57 | -8.615850e-47 |
| Msa0532810 | Msa0608620 | -0.800812 | 1.209172e-48 | -8.615850e-47 |
| Msa0532810 | Msa0618360 | -0.809717 | 1.648541e-50 | -8.615850e-47 |
| Msa0532810 | Msa0621750 | 0.840222 | 9.904972e-58 | -8.615850e-47 |
| Msa0532810 | Msa0622600 | -0.806481 | 8.057167e-50 | -8.615850e-47 |
| Msa0532810 | Msa0639670 | 0.837292 | 5.665100e-57 | -8.615850e-47 |
| Msa0532810 | Msa0647830 | -0.815000 | 1.156454e-51 | -8.615850e-47 |
| Msa0532810 | Msa0657610 | -0.803950 | 2.728825e-49 | -8.615850e-47 |
| Msa0532810 | Msa0658570 | -0.823099 | 1.661891e-53 | -8.615850e-47 |
| Msa0532810 | Msa0688070 | -0.816398 | 5.646255e-52 | -8.615850e-47 |
| Msa0532810 | Msa0690440 | -0.817805 | 2.725458e-52 | -8.615850e-47 |
| Msa0532810 | Msa0715720 | -0.823255 | 1.528071e-53 | -8.615850e-47 |
| Msa0532810 | Msa0744170 | 0.838690 | 2.475588e-57 | -8.615850e-47 |
| Msa0532810 | Msa0745260 | 0.832155 | 1.110953e-55 | -8.615850e-47 |
| Msa0532810 | Msa0768680 | 0.832108 | 1.140823e-55 | -8.615850e-47 |
| Msa0532810 | Msa0768710 | 0.825551 | 4.406463e-54 | -8.615850e-47 |
| Msa0532810 | Msa0788070 | 0.810972 | 8.835872e-51 | -8.615850e-47 |
| Msa0532810 | Msa0801740 | -0.802887 | 4.531523e-49 | -8.615850e-47 |
| Msa0532810 | Msa0807030 | -0.804317 | 2.289230e-49 | -8.615850e-47 |
| Msa0532810 | Msa0808930 | -0.817340 | 3.469990e-52 | -8.615850e-47 |
| Msa0532810 | Msa0810360 | 0.809536 | 1.802592e-50 | -8.615850e-47 |
| Msa0532810 | Msa0818110 | -0.811785 | 5.885437e-51 | -8.615850e-47 |
| Msa0532810 | Msa0825240 | 0.835733 | 1.413180e-56 | -8.615850e-47 |
| Msa0532810 | Msa0828540 | -0.810360 | 1.198340e-50 | -8.615850e-47 |
| Msa0532810 | Msa0840380 | -0.801977 | 6.980180e-49 | -8.615850e-47 |
| Msa0532810 | Msa0864470 | 0.830578 | 2.713836e-55 | -8.615850e-47 |
| Msa0532810 | Msa0865510 | 0.813428 | 2.572785e-51 | -8.615850e-47 |
| Msa0532810 | Msa0876850 | 0.849365 | 3.388279e-60 | -8.615850e-47 |
| Msa0532810 | Msa0879550 | 0.812797 | 3.538574e-51 | -8.615850e-47 |
| Msa0532810 | Msa0881160 | -0.806610 | 7.565011e-50 | -8.615850e-47 |
| Msa0532810 | Msa0881210 | 0.838850 | 2.250734e-57 | -8.615850e-47 |
| Msa0532810 | Msa0886330 | 0.831962 | 1.239713e-55 | -8.615850e-47 |
| Msa0532810 | Msa0896760 | -0.813361 | 2.661167e-51 | -8.615850e-47 |
| Msa0532810 | Msa0899450 | -0.804981 | 1.663786e-49 | -8.615850e-47 |
| Msa0532810 | Msa0913480 | 0.826496 | 2.627857e-54 | -8.615850e-47 |
| Msa0532810 | Msa0942080 | 0.866136 | 3.554354e-65 | -8.615850e-47 |
| Msa0532810 | Msa0946690 | 0.845353 | 4.280978e-59 | -8.615850e-47 |
| Msa0532810 | Msa0949790 | -0.818211 | 2.206778e-52 | -8.615850e-47 |
| Msa0532810 | Msa0956570 | -0.815051 | 1.126962e-51 | -8.615850e-47 |
| Msa0532810 | Msa0998890 | 0.827975 | 1.162679e-54 | -8.615850e-47 |
| Msa0532810 | Msa1001200 | -0.820640 | 6.165517e-53 | -8.615850e-47 |
| Msa0532810 | Msa1006160 | 0.810569 | 1.080027e-50 | -8.615850e-47 |
| Msa0532810 | Msa1033410 | 0.816782 | 4.631218e-52 | -8.615850e-47 |
| Msa0532810 | Msa1041600 | 0.882591 | 9.162900e-71 | -8.615850e-47 |
| Msa0532810 | Msa1054410 | -0.817515 | 3.168863e-52 | -8.615850e-47 |
| Msa0532810 | Msa1068200 | 0.834748 | 2.505090e-56 | -8.615850e-47 |
| Msa0532810 | Msa1073070 | 0.831530 | 1.584419e-55 | -8.615850e-47 |
| Msa0532810 | Msa1075080 | 0.872263 | 3.636468e-67 | -8.615850e-47 |
| Msa0532810 | Msa1075220 | 0.847672 | 9.968846e-60 | -8.615850e-47 |
| Msa0532810 | Msa1116130 | 0.815225 | 1.030927e-51 | -8.615850e-47 |
| Msa0532810 | Msa1121450 | 0.832635 | 8.449577e-56 | -8.615850e-47 |
| Msa0532810 | Msa1124540 | 0.845075 | 5.089887e-59 | -8.615850e-47 |
| Msa0532810 | Msa1139000 | 0.835094 | 2.049170e-56 | -8.615850e-47 |
| Msa0532810 | Msa1144720 | 0.878519 | 2.629936e-69 | -8.615850e-47 |
| Msa0532810 | Msa1156340 | 0.842824 | 2.042792e-58 | -8.615850e-47 |
| Msa0532810 | Msa1162550 | 0.849263 | 3.617324e-60 | -8.615850e-47 |
| Msa0532810 | Msa1163590 | 0.805638 | 1.211908e-49 | -8.615850e-47 |
| Msa0532810 | Msa1165700 | 0.812149 | 4.901186e-51 | -8.615850e-47 |
| Msa0532810 | Msa1166500 | 0.877840 | 4.548916e-69 | -8.615850e-47 |
| Msa0532810 | Msa1183100 | 0.829060 | 6.357319e-55 | -8.615850e-47 |
| Msa0532810 | Msa1184530 | -0.821348 | 4.235310e-53 | -8.615850e-47 |
| Msa0532810 | Msa1184550 | -0.811990 | 5.310267e-51 | -8.615850e-47 |
| Msa0532810 | Msa1202770 | 0.851487 | 8.594106e-61 | -8.615850e-47 |
| Msa0532810 | Msa1224480 | -0.814588 | 1.427437e-51 | -8.615850e-47 |
| Msa0532810 | Msa1224580 | 0.836402 | 9.559455e-57 | -8.615850e-47 |
| Msa0532810 | Msa1225730 | 0.866976 | 1.922204e-65 | -8.615850e-47 |
| Msa0532810 | Msa1230830 | -0.815049 | 1.128199e-51 | -8.615850e-47 |
| Msa0532810 | Msa1235400 | -0.804559 | 2.038509e-49 | -8.615850e-47 |
| Msa0532810 | Msa1243100 | -0.833616 | 4.815395e-56 | -8.615850e-47 |
| Msa0532810 | Msa1257800 | 0.819294 | 1.252315e-52 | -8.615850e-47 |
| Msa0532810 | Msa1258380 | 0.841137 | 5.701620e-58 | -8.615850e-47 |
| Msa0532810 | Msa1262990 | 0.812244 | 4.673439e-51 | -8.615850e-47 |
| Msa0532810 | Msa1264860 | 0.857540 | 1.522304e-62 | -8.615850e-47 |
| Msa0532810 | Msa1265340 | 0.806483 | 8.047316e-50 | -8.615850e-47 |
| Msa0532810 | Msa1267610 | -0.822103 | 2.833222e-53 | -8.615850e-47 |
| Msa0532810 | Msa1269940 | -0.801845 | 7.429245e-49 | -8.615850e-47 |
| Msa0532810 | Msa1279690 | 0.823850 | 1.109368e-53 | -8.615850e-47 |
| Msa0532810 | Msa1288340 | -0.803936 | 2.748217e-49 | -8.615850e-47 |
| Msa0532810 | Msa1295540 | 0.837732 | 4.370536e-57 | -8.615850e-47 |
| Msa0532810 | Msa1311340 | -0.806355 | 8.565211e-50 | -8.615850e-47 |
| Msa0532810 | Msa1314770 | -0.804750 | 1.859343e-49 | -8.615850e-47 |
| Msa0532810 | Msa1341810 | -0.820317 | 7.312104e-53 | -8.615850e-47 |
| Msa0532810 | Msa1364830 | -0.817739 | 2.820689e-52 | -8.615850e-47 |
| Msa0532810 | Msa1373350 | -0.812928 | 3.312353e-51 | -8.615850e-47 |
| Msa0532810 | Msa1376890 | -0.819851 | 9.347148e-53 | -8.615850e-47 |
| Msa0532810 | Msa1376930 | -0.810520 | 1.106742e-50 | -8.615850e-47 |
| Msa0532810 | Msa1377070 | -0.818079 | 2.363457e-52 | -8.615850e-47 |
| Msa0532810 | Msa1378230 | -0.812871 | 3.408427e-51 | -8.615850e-47 |
| Msa0532810 | Msa1386750 | -0.828820 | 7.269887e-55 | -8.615850e-47 |
| Msa0532810 | Msa1390050 | -0.808619 | 2.834034e-50 | -8.615850e-47 |
| Msa0532810 | Msa1390160 | 0.821770 | 3.382846e-53 | -8.615850e-47 |
| Msa0532810 | Msa1393040 | -0.824347 | 8.477831e-54 | -8.615850e-47 |
| Msa0532810 | Msa1394540 | -0.815684 | 8.151213e-52 | -8.615850e-47 |
| Msa0532810 | Msa1404240 | 0.850817 | 1.328323e-60 | -8.615850e-47 |
| Msa0532810 | Msa1416140 | 0.850210 | 1.967136e-60 | -8.615850e-47 |
| Msa0532810 | Msa1433150 | 0.830077 | 3.598625e-55 | -8.615850e-47 |
| Msa0532810 | Msa1444250 | 0.841002 | 6.185795e-58 | -8.615850e-47 |
| Msa0532810 | Msa1445030 | -0.817167 | 3.794411e-52 | -8.615850e-47 |
| Msa0532810 | Msa1451620 | 0.890470 | 9.570543e-74 | -8.615850e-47 |
| Msa0532810 | Msa1453560 | -0.832126 | 1.129429e-55 | -8.615850e-47 |
| Msa0532810 | Msa1458550 | -0.806512 | 7.934801e-50 | -8.615850e-47 |
| Msa0532810 | Msa1459050 | -0.807865 | 4.102448e-50 | -8.615850e-47 |
| Msa0532810 | Msa1461810 | 0.881779 | 1.807888e-70 | -8.615850e-47 |
| Msa0532810 | Msa1463650 | 0.848143 | 7.392682e-60 | -8.615850e-47 |
| Msa0532810 | Msa1464940 | -0.813405 | 2.602204e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532810 | MtrunA17_Chr4g0036121 | 100.000 | 38 | 0 | 0 | 1 | 38 | 1 | 38 | 1.79e-20 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0532810 | AT3G01130.8 | 73.333 | 45 | 12 | 0 | 1 | 45 | 1 | 45 | 3.34e-17 | 69.3 |
| Msa0532810 | AT3G01130.4 | 73.333 | 45 | 12 | 0 | 1 | 45 | 1 | 45 | 3.34e-17 | 69.3 |
| Msa0532810 | AT3G01130.3 | 74.419 | 43 | 11 | 0 | 1 | 43 | 1 | 43 | 2.18e-15 | 64.3 |
| Msa0532810 | AT3G01130.6 | 74.419 | 43 | 11 | 0 | 1 | 43 | 1 | 43 | 2.18e-15 | 64.3 |
| Msa0532810 | AT3G01130.5 | 81.579 | 38 | 7 | 0 | 1 | 38 | 1 | 38 | 4.38e-15 | 63.5 |
| Msa0532810 | AT3G01130.2 | 81.579 | 38 | 7 | 0 | 1 | 38 | 1 | 38 | 7.57e-15 | 62.8 |
| Msa0532810 | AT5G15320.1 | 74.359 | 39 | 10 | 0 | 1 | 39 | 1 | 39 | 1.35e-13 | 59.7 |
| Msa0532810 | AT5G15320.2 | 65.854 | 41 | 14 | 0 | 1 | 41 | 1 | 41 | 8.07e-12 | 55.1 |
| Msa0532810 | AT3G01130.7 | 80.645 | 31 | 6 | 0 | 1 | 31 | 1 | 31 | 4.63e-11 | 53.1 |
| Msa0532810 | AT3G01130.1 | 80.645 | 31 | 6 | 0 | 1 | 31 | 1 | 31 | 4.63e-11 | 53.1 |
Find 44 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCAGAGTTTCTACTTAAA+AGG | 0.119565 | 4_1:+7352693 | Msa0532810:CDS |
| CTTAAGATATTTGAGCTTAA+TGG | 0.120905 | 4_1:-7349849 | None:intergenic |
| TTCTCCTTCGGCATTGTTTA+TGG | 0.154246 | 4_1:+7349824 | Msa0532810:CDS |
| TCGGGTCAAAACATTAAAAT+AGG | 0.183417 | 4_1:+7349493 | Msa0532810:five_prime_UTR |
| CCAAGGATCCGATCCATATT+AGG | 0.242726 | 4_1:-7352756 | None:intergenic |
| TCCAACGGGAATCCCTAATA+TGG | 0.334269 | 4_1:+7352743 | Msa0532810:CDS |
| ATCAGAGTTTCTACTTAAAA+GGG | 0.350524 | 4_1:+7352694 | Msa0532810:CDS |
| AGAGCTTCTGCTTTCTCCTT+CGG | 0.362734 | 4_1:+7349812 | Msa0532810:CDS |
| AGGTGCCATGAGAACGATTC+TGG | 0.383976 | 4_1:-7349648 | None:intergenic |
| TTACATTCTCATATCCCTCT+AGG | 0.389465 | 4_1:+7349542 | Msa0532810:five_prime_UTR |
| ATATGGGCCTAGACAAGTTC+GGG | 0.419546 | 4_1:+7349475 | None:intergenic |
| CATTAAGCTCAAATATCTTA+AGG | 0.421950 | 4_1:+7349850 | Msa0532810:CDS |
| CCTAATATGGATCGGATCCT+TGG | 0.423224 | 4_1:+7352756 | Msa0532810:CDS |
| CAAGGATCCGATCCATATTA+GGG | 0.424788 | 4_1:-7352755 | None:intergenic |
| TTAGGGATTCCCGTTGGAAC+AGG | 0.429861 | 4_1:-7352738 | None:intergenic |
| CGGTACCAGCACCCTAGCTT+TGG | 0.450386 | 4_1:+7349688 | Msa0532810:CDS |
| AGGGTGCTGGTACCGGAATA+AGG | 0.455261 | 4_1:-7349680 | None:intergenic |
| CCTCCACCAGGACCTTATTC+CGG | 0.459043 | 4_1:+7349668 | Msa0532810:CDS |
| CGGGTCAAAACATTAAAATA+GGG | 0.466254 | 4_1:+7349494 | Msa0532810:five_prime_UTR |
| CAAAGCTAGGGTGCTGGTAC+CGG | 0.469556 | 4_1:-7349687 | None:intergenic |
| CTTGGTCCTCCTAAAACTAC+TGG | 0.469587 | 4_1:+7352774 | Msa0532810:CDS |
| TACATTCTCATATCCCTCTA+GGG | 0.475409 | 4_1:+7349543 | Msa0532810:five_prime_UTR |
| ACTAATCCTCCTGTTCCAAC+GGG | 0.498880 | 4_1:+7352729 | Msa0532810:CDS |
| AATATGGGCCTAGACAAGTT+CGG | 0.515462 | 4_1:+7349474 | None:intergenic |
| AACTAATCCTCCTGTTCCAA+CGG | 0.530290 | 4_1:+7352728 | Msa0532810:CDS |
| AAATCAAAGATGCTATTCAC+AGG | 0.533688 | 4_1:-7352832 | None:intergenic |
| GTTCTCATGGCACCTCCACC+AGG | 0.537603 | 4_1:+7349656 | Msa0532810:exon |
| CTAAAACTACTGGTAATAGC+AGG | 0.540433 | 4_1:+7352784 | Msa0532810:CDS |
| CAAAACATTAAAATAGGGTA+CGG | 0.543688 | 4_1:+7349499 | Msa0532810:five_prime_UTR |
| CTGGTACCGGAATAAGGTCC+TGG | 0.544143 | 4_1:-7349674 | None:intergenic |
| CCGGAATAAGGTCCTGGTGG+AGG | 0.546508 | 4_1:-7349668 | None:intergenic |
| TTTAATTATCGAACCCTAGA+GGG | 0.552402 | 4_1:-7349556 | None:intergenic |
| TAGCAGGTTTCCACTCTATG+TGG | 0.561730 | 4_1:+7352800 | Msa0532810:CDS |
| TCCATATTAGGGATTCCCGT+TGG | 0.567885 | 4_1:-7352744 | None:intergenic |
| GGGATTCCCGTTGGAACAGG+AGG | 0.575977 | 4_1:-7352735 | None:intergenic |
| GGAAACAGACCCACATAGAG+TGG | 0.579233 | 4_1:-7352810 | None:intergenic |
| CGGGAATCCCTAATATGGAT+CGG | 0.596868 | 4_1:+7352748 | Msa0532810:CDS |
| TCAGAGTTTCTACTTAAAAG+GGG | 0.603899 | 4_1:+7352695 | Msa0532810:CDS |
| ATTAACCAGAATCGTTCTCA+TGG | 0.607989 | 4_1:+7349643 | Msa0532810:exon |
| AGCAGGTTTCCACTCTATGT+GGG | 0.609582 | 4_1:+7352801 | Msa0532810:CDS |
| GGATCCATAAACAATGCCGA+AGG | 0.643427 | 4_1:-7349828 | None:intergenic |
| ATTTAATTATCGAACCCTAG+AGG | 0.652574 | 4_1:-7349557 | None:intergenic |
| GTACCGGAATAAGGTCCTGG+TGG | 0.666177 | 4_1:-7349671 | None:intergenic |
| AATCAAAGATGCTATTCACA+GGG | 0.672510 | 4_1:-7352831 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGAATTAAAAATCAGTTTT+TGG | + | chr4_1:7349953-7349972 | Msa0532810:intron | 15.0% |
| !!! | TGTAATAGTTTTGTTTAATT+AGG | + | chr4_1:7350003-7350022 | Msa0532810:intron | 15.0% |
| !! | TAATATTTATGTTAGTTACA+AGG | - | chr4_1:7350372-7350391 | None:intergenic | 15.0% |
| !! | ATGTTTATTAAGTAATAATC+CGG | + | chr4_1:7351070-7351089 | Msa0532810:intron | 15.0% |
| !! | TTTATATCATATTATGTAAG+TGG | + | chr4_1:7351844-7351863 | Msa0532810:intron | 15.0% |
| !! | ACAAATATAGAAATAACAAA+TGG | - | chr4_1:7352077-7352096 | None:intergenic | 15.0% |
| !! | AAAATTTCTAACAATTCAAG+TGG | - | chr4_1:7349745-7349764 | None:intergenic | 20.0% |
| !! | AAATCAGATCGTTAAAAAAA+GGG | - | chr4_1:7349889-7349908 | None:intergenic | 20.0% |
| !!! | TTTTACATCTGAATTCAAAA+GGG | - | chr4_1:7349934-7349953 | None:intergenic | 20.0% |
| !!! | TTTTTACATCTGAATTCAAA+AGG | - | chr4_1:7349935-7349954 | None:intergenic | 20.0% |
| !!! | AATTACAATTTTGGTACTAA+AGG | + | chr4_1:7351262-7351281 | Msa0532810:intron | 20.0% |
| !!! | TAGATCAGATATACTTTTTA+TGG | + | chr4_1:7351977-7351996 | Msa0532810:intron | 20.0% |
| !! | AGAAATAACAAATGGAAATA+TGG | - | chr4_1:7352069-7352088 | None:intergenic | 20.0% |
| !! | TTCTATATTTGTAAGAGATT+AGG | + | chr4_1:7352085-7352104 | Msa0532810:intron | 20.0% |
| !! | AAGTAGAAAAATGTTATAAC+AGG | - | chr4_1:7352196-7352215 | None:intergenic | 20.0% |
| !! | TCAGAAGGAAAAAAAAAATT+GGG | - | chr4_1:7352337-7352356 | None:intergenic | 20.0% |
| !! | ATCAGAAGGAAAAAAAAAAT+TGG | - | chr4_1:7352338-7352357 | None:intergenic | 20.0% |
| !! | ATAATCAGAAAGAAAAAATC+CGG | - | chr4_1:7352641-7352660 | None:intergenic | 20.0% |
| ! | CAAAACATTAAAATAGGGTA+CGG | + | chr4_1:7349499-7349518 | Msa0532810:five_prime_UTR | 25.0% |
| ! | ATAACAAAGAAGCGAAATTA+GGG | - | chr4_1:7349719-7349738 | None:intergenic | 25.0% |
| ! | AATAACAAAGAAGCGAAATT+AGG | - | chr4_1:7349720-7349739 | None:intergenic | 25.0% |
| ! | CTTAAGATATTTGAGCTTAA+TGG | - | chr4_1:7349852-7349871 | None:intergenic | 25.0% |
| ! | CATTAAGCTCAAATATCTTA+AGG | + | chr4_1:7349850-7349869 | Msa0532810:CDS | 25.0% |
| ! | GAAATCAGATCGTTAAAAAA+AGG | - | chr4_1:7349890-7349909 | None:intergenic | 25.0% |
| ! | TTTACATCTGAATTCAAAAG+GGG | - | chr4_1:7349933-7349952 | None:intergenic | 25.0% |
| !!! | TAGTTTTGTTTAATTAGGCT+AGG | + | chr4_1:7350008-7350027 | Msa0532810:intron | 25.0% |
| ! | ATAATCAAATTAGAGCGAAA+AGG | - | chr4_1:7350037-7350056 | None:intergenic | 25.0% |
| ! | TTTCGCTCTAATTTGATTAT+CGG | + | chr4_1:7350037-7350056 | Msa0532810:intron | 25.0% |
| !!! | GGTGTTATTAATCTAAACTT+TGG | + | chr4_1:7350161-7350180 | Msa0532810:intron | 25.0% |
| ! | TAGCTATACTATGTGATATA+TGG | + | chr4_1:7350253-7350272 | Msa0532810:intron | 25.0% |
| ! | ACTATGTGATATATGGATAT+TGG | + | chr4_1:7350260-7350279 | Msa0532810:intron | 25.0% |
| ! | CTATGTGATATATGGATATT+GGG | + | chr4_1:7350261-7350280 | Msa0532810:intron | 25.0% |
| ! | CATTTCTAACATTAGAACAT+GGG | - | chr4_1:7350306-7350325 | None:intergenic | 25.0% |
| ! | ACTAACATAAATATTAGCCA+CGG | + | chr4_1:7350376-7350395 | Msa0532810:intron | 25.0% |
| !! | TGAAGTGAAAAATAGTTTGT+GGG | - | chr4_1:7350422-7350441 | None:intergenic | 25.0% |
| !! | TGCAAAATTGTATGTTACTT+AGG | + | chr4_1:7350444-7350463 | Msa0532810:intron | 25.0% |
| !! | GCAAAATTGTATGTTACTTA+GGG | + | chr4_1:7350445-7350464 | Msa0532810:intron | 25.0% |
| ! | CAAAAATAATCCAATCCAAA+CGG | - | chr4_1:7350472-7350491 | None:intergenic | 25.0% |
| ! | ATATTGCCTTTAATGAAATG+TGG | - | chr4_1:7350717-7350736 | None:intergenic | 25.0% |
| !!! | ACAAGTAGTACACTTTTTAA+AGG | - | chr4_1:7350749-7350768 | None:intergenic | 25.0% |
| ! | CTCGTTAAAAAATATCCAAT+AGG | + | chr4_1:7350832-7350851 | Msa0532810:intron | 25.0% |
| ! | CAATTTAGCAACAAATTTAG+CGG | + | chr4_1:7351406-7351425 | Msa0532810:intron | 25.0% |
| ! | TAAATTGAGTTTACTTGCAT+GGG | - | chr4_1:7351567-7351586 | None:intergenic | 25.0% |
| !!! | CTATCACTATTTTTCATAGA+TGG | - | chr4_1:7351608-7351627 | None:intergenic | 25.0% |
| !! | TTTCCCAAAAGAATATGTTT+TGG | + | chr4_1:7351648-7351667 | Msa0532810:intron | 25.0% |
| !! | CAACCAAAACATATTCTTTT+GGG | - | chr4_1:7351654-7351673 | None:intergenic | 25.0% |
| !! | ACAACCAAAACATATTCTTT+TGG | - | chr4_1:7351655-7351674 | None:intergenic | 25.0% |
| ! | ACAAACAACACAAACAATTA+AGG | + | chr4_1:7351718-7351737 | Msa0532810:intron | 25.0% |
| ! | TTGCTTCTTGTTCAAAATTA+AGG | + | chr4_1:7351748-7351767 | Msa0532810:intron | 25.0% |
| !! | TAGTATTTTACCCTAAATCA+GGG | - | chr4_1:7351925-7351944 | None:intergenic | 25.0% |
| !! | TTAGTATTTTACCCTAAATC+AGG | - | chr4_1:7351926-7351945 | None:intergenic | 25.0% |
| ! | ATAACAAATGGAAATATGGA+AGG | - | chr4_1:7352065-7352084 | None:intergenic | 25.0% |
| !! | TTTCCTTCTGATTTAAGATT+TGG | + | chr4_1:7352346-7352365 | Msa0532810:intron | 25.0% |
| ! | TAACCAAATCTTAAATCAGA+AGG | - | chr4_1:7352352-7352371 | None:intergenic | 25.0% |
| ! | GTGAAAATGTTCAAATTATG+AGG | + | chr4_1:7352398-7352417 | Msa0532810:intron | 25.0% |
| ! | ACAAGATAACTATCAAAACA+AGG | - | chr4_1:7352430-7352449 | None:intergenic | 25.0% |
| ! | TGACTCAATAAAAAAAGAAC+AGG | - | chr4_1:7352521-7352540 | None:intergenic | 25.0% |
| !!! | CTTGTTTTTCGTTAATCTAA+GGG | - | chr4_1:7352590-7352609 | None:intergenic | 25.0% |
| !!! | ACTTGTTTTTCGTTAATCTA+AGG | - | chr4_1:7352591-7352610 | None:intergenic | 25.0% |
| ! | TATCAGAGTTTCTACTTAAA+AGG | + | chr4_1:7352693-7352712 | Msa0532810:CDS | 25.0% |
| ! | ATCAGAGTTTCTACTTAAAA+GGG | + | chr4_1:7352694-7352713 | Msa0532810:CDS | 25.0% |
| TCGGGTCAAAACATTAAAAT+AGG | + | chr4_1:7349493-7349512 | Msa0532810:five_prime_UTR | 30.0% | |
| CGGGTCAAAACATTAAAATA+GGG | + | chr4_1:7349494-7349513 | Msa0532810:five_prime_UTR | 30.0% | |
| TTTAATTATCGAACCCTAGA+GGG | - | chr4_1:7349559-7349578 | None:intergenic | 30.0% | |
| ATTTAATTATCGAACCCTAG+AGG | - | chr4_1:7349560-7349579 | None:intergenic | 30.0% | |
| !!! | TTTTGGTTTTGTGTATTTGC+AGG | + | chr4_1:7349784-7349803 | Msa0532810:intron | 30.0% |
| ! | TTAATCTAGGATAGACTTCA+AGG | + | chr4_1:7350093-7350112 | Msa0532810:intron | 30.0% |
| ! | TAATCTAGGATAGACTTCAA+GGG | + | chr4_1:7350094-7350113 | Msa0532810:intron | 30.0% |
| ATGGATTCAGAAAGTTACAA+TGG | - | chr4_1:7350187-7350206 | None:intergenic | 30.0% | |
| CCATTTCTAACATTAGAACA+TGG | - | chr4_1:7350307-7350326 | None:intergenic | 30.0% | |
| CCATGTTCTAATGTTAGAAA+TGG | + | chr4_1:7350304-7350323 | Msa0532810:intron | 30.0% | |
| GTGAAGTGAAAAATAGTTTG+TGG | - | chr4_1:7350423-7350442 | None:intergenic | 30.0% | |
| CAAAATAAGCCTAATCCAAA+CGG | + | chr4_1:7350659-7350678 | Msa0532810:intron | 30.0% | |
| AAAATAAGCCTAATCCAAAC+GGG | + | chr4_1:7350660-7350679 | Msa0532810:intron | 30.0% | |
| AACTGTCCACATTTCATTAA+AGG | + | chr4_1:7350708-7350727 | Msa0532810:intron | 30.0% | |
| AACTAGCAAAAGGTGAATAA+TGG | + | chr4_1:7350855-7350874 | Msa0532810:intron | 30.0% | |
| ! | AAGATATTGTAGGGTTTGTT+TGG | + | chr4_1:7350892-7350911 | Msa0532810:intron | 30.0% |
| ! | AGATATTGTAGGGTTTGTTT+GGG | + | chr4_1:7350893-7350912 | Msa0532810:intron | 30.0% |
| ACATAGATATGAGTACAAAG+AGG | - | chr4_1:7351054-7351073 | None:intergenic | 30.0% | |
| TGTTCATAATTTCTCACTCA+AGG | + | chr4_1:7351347-7351366 | Msa0532810:intron | 30.0% | |
| TACTGAGTACTTGTTTATTC+AGG | - | chr4_1:7351513-7351532 | None:intergenic | 30.0% | |
| GTAAATTGAGTTTACTTGCA+TGG | - | chr4_1:7351568-7351587 | None:intergenic | 30.0% | |
| ! | AGTATTTTACCCTAAATCAG+GGG | - | chr4_1:7351924-7351943 | None:intergenic | 30.0% |
| ! | TCCATGTGTTACGTTTTTAT+CGG | + | chr4_1:7352003-7352022 | Msa0532810:intron | 30.0% |
| AATCAAACACAATGAATGCA+AGG | - | chr4_1:7352173-7352192 | None:intergenic | 30.0% | |
| TTCCACGTCATGAATTATTT+GGG | - | chr4_1:7352298-7352317 | None:intergenic | 30.0% | |
| AAAAAAATTGGGAGAACACA+TGG | - | chr4_1:7352326-7352345 | None:intergenic | 30.0% | |
| TGACAAAACAGTATATAGCA+GGG | - | chr4_1:7352485-7352504 | None:intergenic | 30.0% | |
| ATGACAAAACAGTATATAGC+AGG | - | chr4_1:7352486-7352505 | None:intergenic | 30.0% | |
| AACGAAAAACAAGTCGAAAA+TGG | + | chr4_1:7352597-7352616 | Msa0532810:intron | 30.0% | |
| ! | ACTCTGATAGATCTAAAACA+TGG | - | chr4_1:7352682-7352701 | None:intergenic | 30.0% |
| TCAGAGTTTCTACTTAAAAG+GGG | + | chr4_1:7352695-7352714 | Msa0532810:CDS | 30.0% | |
| TTACATTCTCATATCCCTCT+AGG | + | chr4_1:7349542-7349561 | Msa0532810:five_prime_UTR | 35.0% | |
| TACATTCTCATATCCCTCTA+GGG | + | chr4_1:7349543-7349562 | Msa0532810:five_prime_UTR | 35.0% | |
| ATTAACCAGAATCGTTCTCA+TGG | + | chr4_1:7349643-7349662 | Msa0532810:exon | 35.0% | |
| ! | TTAGGGTTTTACCAAAGCTA+GGG | - | chr4_1:7349702-7349721 | None:intergenic | 35.0% |
| ! | ATTAGGGTTTTACCAAAGCT+AGG | - | chr4_1:7349703-7349722 | None:intergenic | 35.0% |
| GTGGTTTCTCTAGTTAATCT+AGG | + | chr4_1:7350080-7350099 | Msa0532810:intron | 35.0% | |
| !! | CAGCACTGATTTATTATTGC+TGG | + | chr4_1:7350137-7350156 | Msa0532810:intron | 35.0% |
| !! | CACTGATTTATTATTGCTGG+TGG | + | chr4_1:7350140-7350159 | Msa0532810:intron | 35.0% |
| ! | CTGTGGATCTAGTTTGAAAA+TGG | - | chr4_1:7350206-7350225 | None:intergenic | 35.0% |
| CTTAATTCAACCTAAGACTG+TGG | - | chr4_1:7350223-7350242 | None:intergenic | 35.0% | |
| CACATAGTATAGCTAAGCAA+AGG | - | chr4_1:7350248-7350267 | None:intergenic | 35.0% | |
| CCATCACCCAAACAAAATAA+GGG | - | chr4_1:7350686-7350705 | None:intergenic | 35.0% | |
| ACCATCACCCAAACAAAATA+AGG | - | chr4_1:7350687-7350706 | None:intergenic | 35.0% | |
| ATCCAATAGGAACTAGCAAA+AGG | + | chr4_1:7350845-7350864 | Msa0532810:intron | 35.0% | |
| CCAAAGAGGAAGATATTGTA+GGG | + | chr4_1:7350883-7350902 | Msa0532810:intron | 35.0% | |
| !! | TTAATTTGTTGCTGTGTCAG+CGG | - | chr4_1:7350948-7350967 | None:intergenic | 35.0% |
| ACACAGCAACAAATTAAGGA+CGG | + | chr4_1:7350951-7350970 | Msa0532810:intron | 35.0% | |
| CAAAGAGGTGAAAACATTGA+TGG | - | chr4_1:7351039-7351058 | None:intergenic | 35.0% | |
| TGGACTAATTTGAACTTGAG+TGG | + | chr4_1:7351438-7351457 | Msa0532810:intron | 35.0% | |
| !! | TTGAGTGGTAAGTTAGTCTT+GGG | + | chr4_1:7351453-7351472 | Msa0532810:intron | 35.0% |
| CTCATCATTCAAGTACAACA+GGG | - | chr4_1:7351793-7351812 | None:intergenic | 35.0% | |
| ACTCATCATTCAAGTACAAC+AGG | - | chr4_1:7351794-7351813 | None:intergenic | 35.0% | |
| TTAAGTAGTCCCCTGATTTA+GGG | + | chr4_1:7351912-7351931 | Msa0532810:intron | 35.0% | |
| ACCGATAAAAACGTAACACA+TGG | - | chr4_1:7352007-7352026 | None:intergenic | 35.0% | |
| !! | ATGGAAATATGGAAGGTGTT+CGG | - | chr4_1:7352058-7352077 | None:intergenic | 35.0% |
| TACCCAAATAATTCATGACG+TGG | + | chr4_1:7352293-7352312 | Msa0532810:intron | 35.0% | |
| GTTCCACGTCATGAATTATT+TGG | - | chr4_1:7352299-7352318 | None:intergenic | 35.0% | |
| ! | AGTTTCCAGTTGATATTGCA+CGG | + | chr4_1:7352459-7352478 | Msa0532810:intron | 35.0% |
| GAAAAACAAGTCGAAAATGG+CGG | + | chr4_1:7352600-7352619 | Msa0532810:intron | 35.0% | |
| !!! | CTATTACCAGTAGTTTTAGG+AGG | - | chr4_1:7352783-7352802 | None:intergenic | 35.0% |
| ! | CTGCTATTACCAGTAGTTTT+AGG | - | chr4_1:7352786-7352805 | None:intergenic | 35.0% |
| CTAAAACTACTGGTAATAGC+AGG | + | chr4_1:7352784-7352803 | Msa0532810:CDS | 35.0% | |
| TTCTCCTTCGGCATTGTTTA+TGG | + | chr4_1:7349824-7349843 | Msa0532810:CDS | 40.0% | |
| CAAACTAGATCCACAGTCTT+AGG | + | chr4_1:7350210-7350229 | Msa0532810:intron | 40.0% | |
| ATTGGGCGTTCCAATCAAAT+TGG | + | chr4_1:7350278-7350297 | Msa0532810:intron | 40.0% | |
| AACATGGGCTCCAATTTGAT+TGG | - | chr4_1:7350291-7350310 | None:intergenic | 40.0% | |
| ! | TATGTTACTTAGGGTCCGTT+TGG | + | chr4_1:7350454-7350473 | Msa0532810:intron | 40.0% |
| AAACAAAATAAGGGCCCGTT+TGG | - | chr4_1:7350677-7350696 | None:intergenic | 40.0% | |
| !!! | AAACGGGCCCTTATTTTGTT+TGG | + | chr4_1:7350676-7350695 | Msa0532810:intron | 40.0% |
| !!! | AACGGGCCCTTATTTTGTTT+GGG | + | chr4_1:7350677-7350696 | Msa0532810:intron | 40.0% |
| !!! | CCCTTATTTTGTTTGGGTGA+TGG | + | chr4_1:7350683-7350702 | Msa0532810:intron | 40.0% |
| ! | CACCTTTTGCTAGTTCCTAT+TGG | - | chr4_1:7350850-7350869 | None:intergenic | 40.0% |
| GAATAATGGTTGTGCCAAAG+AGG | + | chr4_1:7350869-7350888 | Msa0532810:intron | 40.0% | |
| GCCAAAGAGGAAGATATTGT+AGG | + | chr4_1:7350882-7350901 | Msa0532810:intron | 40.0% | |
| CCCTACAATATCTTCCTCTT+TGG | - | chr4_1:7350886-7350905 | None:intergenic | 40.0% | |
| ! | ATTGTAGGGTTTGTTTGGGA+AGG | + | chr4_1:7350897-7350916 | Msa0532810:intron | 40.0% |
| GCTGACACAGCAACAAATTA+AGG | + | chr4_1:7350947-7350966 | Msa0532810:intron | 40.0% | |
| CACAGCAACAAATTAAGGAC+GGG | + | chr4_1:7350952-7350971 | Msa0532810:intron | 40.0% | |
| TTAGACGACAGTTACATAGC+CGG | - | chr4_1:7351092-7351111 | None:intergenic | 40.0% | |
| ACGACATAGTAGCAGCATAA+TGG | + | chr4_1:7351131-7351150 | Msa0532810:intron | 40.0% | |
| CGACATAGTAGCAGCATAAT+GGG | + | chr4_1:7351132-7351151 | Msa0532810:intron | 40.0% | |
| ! | TCACAAGGCATCAGATCTAT+TGG | - | chr4_1:7351175-7351194 | None:intergenic | 40.0% |
| !! | AAATTTAGCGGTGTTGTGTG+TGG | + | chr4_1:7351418-7351437 | Msa0532810:intron | 40.0% |
| ! | CTTGAGTGGTAAGTTAGTCT+TGG | + | chr4_1:7351452-7351471 | Msa0532810:intron | 40.0% |
| TTACTTGCATGGGATTGAGA+AGG | - | chr4_1:7351557-7351576 | None:intergenic | 40.0% | |
| GTTAAGTAGTCCCCTGATTT+AGG | + | chr4_1:7351911-7351930 | Msa0532810:intron | 40.0% | |
| ! | GTGTTACGTTTTTATCGGTC+AGG | + | chr4_1:7352008-7352027 | Msa0532810:intron | 40.0% |
| AACTAATCCTCCTGTTCCAA+CGG | + | chr4_1:7352728-7352747 | Msa0532810:CDS | 40.0% | |
| CAAGGATCCGATCCATATTA+GGG | - | chr4_1:7352758-7352777 | None:intergenic | 40.0% | |
| !! | GTTTTGACCCGAACTTGTCT+AGG | - | chr4_1:7349485-7349504 | None:intergenic | 45.0% |
| ! | TTTTACCAAAGCTAGGGTGC+TGG | - | chr4_1:7349696-7349715 | None:intergenic | 45.0% |
| AGAGCTTCTGCTTTCTCCTT+CGG | + | chr4_1:7349812-7349831 | Msa0532810:CDS | 45.0% | |
| GGATCCATAAACAATGCCGA+AGG | - | chr4_1:7349831-7349850 | None:intergenic | 45.0% | |
| AACTAGAGAAACCACAGCTG+CGG | - | chr4_1:7350075-7350094 | None:intergenic | 45.0% | |
| CGCTGTCAAATTTACTTCCG+TGG | - | chr4_1:7350396-7350415 | None:intergenic | 45.0% | |
| TACTTAGGGTCCGTTTGGAT+TGG | + | chr4_1:7350459-7350478 | Msa0532810:intron | 45.0% | |
| AATAAGGGCCCGTTTGGATT+AGG | - | chr4_1:7350671-7350690 | None:intergenic | 45.0% | |
| GTTTGGAGACCTATACGCAT+AGG | - | chr4_1:7350926-7350945 | None:intergenic | 45.0% | |
| TTCTCACTCAAGGTGTAGTG+CGG | + | chr4_1:7351357-7351376 | Msa0532810:intron | 45.0% | |
| !! | ATCCATGTCACTGGTTTCAG+TGG | - | chr4_1:7352264-7352283 | None:intergenic | 45.0% |
| ACTGAAACCAGTGACATGGA+TGG | + | chr4_1:7352263-7352282 | Msa0532810:intron | 45.0% | |
| GCGGTCTAATGTTCTAATGC+CGG | + | chr4_1:7352619-7352638 | Msa0532810:intron | 45.0% | |
| ACTAATCCTCCTGTTCCAAC+GGG | + | chr4_1:7352729-7352748 | Msa0532810:CDS | 45.0% | |
| TCCAACGGGAATCCCTAATA+TGG | + | chr4_1:7352743-7352762 | Msa0532810:CDS | 45.0% | |
| TCCATATTAGGGATTCCCGT+TGG | - | chr4_1:7352747-7352766 | None:intergenic | 45.0% | |
| CGGGAATCCCTAATATGGAT+CGG | + | chr4_1:7352748-7352767 | Msa0532810:CDS | 45.0% | |
| CCAAGGATCCGATCCATATT+AGG | - | chr4_1:7352759-7352778 | None:intergenic | 45.0% | |
| CCTAATATGGATCGGATCCT+TGG | + | chr4_1:7352756-7352775 | Msa0532810:CDS | 45.0% | |
| !!! | CAGTAGTTTTAGGAGGACCA+AGG | - | chr4_1:7352776-7352795 | None:intergenic | 45.0% |
| CTTGGTCCTCCTAAAACTAC+TGG | + | chr4_1:7352774-7352793 | Msa0532810:CDS | 45.0% | |
| TAGCAGGTTTCCACTCTATG+TGG | + | chr4_1:7352800-7352819 | Msa0532810:CDS | 45.0% | |
| AGCAGGTTTCCACTCTATGT+GGG | + | chr4_1:7352801-7352820 | Msa0532810:CDS | 45.0% | |
| !!! | TTAATTTTTGTTAATTTTTT+TGG | + | chr4_1:7349767-7349786 | Msa0532810:intron | 5.0% |
| !!! | AAAATTTTAAATTACAATTT+TGG | + | chr4_1:7351253-7351272 | Msa0532810:intron | 5.0% |
| ! | AGGTGCCATGAGAACGATTC+TGG | - | chr4_1:7349651-7349670 | None:intergenic | 50.0% |
| TTTACAAGTTCCCGCAGCTG+TGG | + | chr4_1:7350061-7350080 | Msa0532810:intron | 50.0% | |
| ACTAGAGAAACCACAGCTGC+GGG | - | chr4_1:7350074-7350093 | None:intergenic | 50.0% | |
| ! | GTAGGGTTTGTTTGGGAAGG+AGG | + | chr4_1:7350900-7350919 | Msa0532810:intron | 50.0% |
| TTGTTGCTGTGTCAGCGGTT+TGG | - | chr4_1:7350943-7350962 | None:intergenic | 50.0% | |
| GATGCCTTGTGATGTAGCAC+TGG | + | chr4_1:7351183-7351202 | Msa0532810:intron | 50.0% | |
| GGGACTACTTAACACTCGCA+AGG | - | chr4_1:7351904-7351923 | None:intergenic | 50.0% | |
| GGTGTTCGGCATTAGAGACA+AGG | - | chr4_1:7352044-7352063 | None:intergenic | 50.0% | |
| ! | CTCAGCTTTCTGGTGAGACT+TGG | - | chr4_1:7352230-7352249 | None:intergenic | 50.0% |
| CAAGTCTCACCAGAAAGCTG+AGG | + | chr4_1:7352228-7352247 | Msa0532810:intron | 50.0% | |
| CACCACTGAAACCAGTGACA+TGG | + | chr4_1:7352259-7352278 | Msa0532810:intron | 50.0% | |
| TTCTGCTCCATCCATGTCAC+TGG | - | chr4_1:7352273-7352292 | None:intergenic | 50.0% | |
| TTAGGGATTCCCGTTGGAAC+AGG | - | chr4_1:7352741-7352760 | None:intergenic | 50.0% | |
| GGAAACAGACCCACATAGAG+TGG | - | chr4_1:7352813-7352832 | None:intergenic | 50.0% | |
| CCTCCACCAGGACCTTATTC+CGG | + | chr4_1:7349668-7349687 | Msa0532810:CDS | 55.0% | |
| GTACCGGAATAAGGTCCTGG+TGG | - | chr4_1:7349674-7349693 | None:intergenic | 55.0% | |
| ! | CTGGTACCGGAATAAGGTCC+TGG | - | chr4_1:7349677-7349696 | None:intergenic | 55.0% |
| !! | AGGGTGCTGGTACCGGAATA+AGG | - | chr4_1:7349683-7349702 | None:intergenic | 55.0% |
| !! | CAAAGCTAGGGTGCTGGTAC+CGG | - | chr4_1:7349690-7349709 | None:intergenic | 55.0% |
| GGAAGGAGGCCTATGCGTAT+AGG | + | chr4_1:7350914-7350933 | Msa0532810:intron | 55.0% | |
| GCAGCCAGTGCTACATCACA+AGG | - | chr4_1:7351190-7351209 | None:intergenic | 55.0% | |
| TCACCAGAAAGCTGAGGCCA+AGG | + | chr4_1:7352234-7352253 | Msa0532810:intron | 55.0% | |
| CTGGTTTCAGTGGTGAGCCT+TGG | - | chr4_1:7352254-7352273 | None:intergenic | 55.0% | |
| CAGGGCCGTGCAATATCAAC+TGG | - | chr4_1:7352467-7352486 | None:intergenic | 55.0% | |
| GTTCTCATGGCACCTCCACC+AGG | + | chr4_1:7349656-7349675 | Msa0532810:exon | 60.0% | |
| CCGGAATAAGGTCCTGGTGG+AGG | - | chr4_1:7349671-7349690 | None:intergenic | 60.0% | |
| CGGTACCAGCACCCTAGCTT+TGG | + | chr4_1:7349688-7349707 | Msa0532810:CDS | 60.0% | |
| !! | AGCACTGGCTGCACATGCAC+AGG | + | chr4_1:7351198-7351217 | Msa0532810:intron | 60.0% |
| !! | GCACTGGCTGCACATGCACA+GGG | + | chr4_1:7351199-7351218 | Msa0532810:intron | 60.0% |
| GAGCCTTGGCCTCAGCTTTC+TGG | - | chr4_1:7352240-7352259 | None:intergenic | 60.0% | |
| GGGATTCCCGTTGGAACAGG+AGG | - | chr4_1:7352738-7352757 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 7349480 | 7352842 | 7349480 | ID=Msa0532810;Name=Msa0532810 |
| chr4_1 | mRNA | 7349480 | 7352842 | 7349480 | ID=Msa0532810-mRNA-1;Parent=Msa0532810;Name=Msa0532810-mRNA-1;_AED=0.27;_eAED=0.51;_QI=182|0.5|0.66|1|1|1|3|0|88 |
| chr4_1 | exon | 7349480 | 7349709 | 7349480 | ID=Msa0532810-mRNA-1:exon:2523;Parent=Msa0532810-mRNA-1 |
| chr4_1 | exon | 7349806 | 7349871 | 7349806 | ID=Msa0532810-mRNA-1:exon:2524;Parent=Msa0532810-mRNA-1 |
| chr4_1 | exon | 7352690 | 7352842 | 7352690 | ID=Msa0532810-mRNA-1:exon:2525;Parent=Msa0532810-mRNA-1 |
| chr4_1 | five_prime_UTR | 7349480 | 7349661 | 7349480 | ID=Msa0532810-mRNA-1:five_prime_utr;Parent=Msa0532810-mRNA-1 |
| chr4_1 | CDS | 7349662 | 7349709 | 7349662 | ID=Msa0532810-mRNA-1:cds;Parent=Msa0532810-mRNA-1 |
| chr4_1 | CDS | 7349806 | 7349871 | 7349806 | ID=Msa0532810-mRNA-1:cds;Parent=Msa0532810-mRNA-1 |
| chr4_1 | CDS | 7352690 | 7352842 | 7352690 | ID=Msa0532810-mRNA-1:cds;Parent=Msa0532810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
