AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0971090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0971090 MtrunA17_Chr6g0450151 91.111 900 66 4 1 889 1 897 0.0 1602
Msa0971090 MtrunA17_Chr6g0450071 80.780 692 63 6 1 682 1 632 0.0 1062
Msa0971090 MtrunA17_Chr6g0450071 82.609 46 8 0 258 303 631 676 2.36e-17 87.0
Msa0971090 MtrunA17_Chr1g0181651 30.769 351 181 12 129 449 165 483 9.05e-32 133
Msa0971090 MtrunA17_Chr1g0185901 36.500 200 121 4 268 465 362 557 1.36e-30 130
Msa0971090 MtrunA17_Chr2g0333291 30.743 296 160 9 267 546 257 523 1.88e-28 122
Msa0971090 MtrunA17_Chr4g0018601 33.058 242 152 6 267 500 313 552 1.15e-26 116
Msa0971090 MtrunA17_Chr1g0170751 35.263 190 117 5 264 449 286 473 2.67e-26 116
Msa0971090 MtrunA17_Chr2g0333801 35.484 155 77 3 267 420 6 138 1.77e-21 91.3
Msa0971090 MtrunA17_Chr1g0192031 38.650 163 77 7 268 418 74 225 2.13e-21 98.2
Msa0971090 MtrunA17_Chr7g0272631 45.556 90 48 1 268 356 87 176 4.51e-21 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0971090 AT3G27860.2 32.427 478 242 17 268 725 61 477 9.64e-54 199
Msa0971090 AT3G27860.1 32.427 478 242 17 268 725 61 477 9.64e-54 199
Msa0971090 AT3G09670.2 37.569 181 109 3 272 449 201 380 4.85e-27 118
Msa0971090 AT3G09670.1 37.569 181 109 3 272 449 201 380 4.85e-27 118
Msa0971090 AT5G02950.1 30.147 272 171 6 176 439 8 268 3.39e-26 115
Msa0971090 AT5G02950.2 30.147 272 171 6 176 439 8 268 3.39e-26 115
Msa0971090 AT5G27650.1 32.292 192 106 5 268 446 171 351 1.52e-21 101
Msa0971090 AT3G05430.1 46.667 90 47 1 268 356 133 222 2.53e-20 97.4
Msa0971090 AT3G05430.2 37.226 137 72 4 268 400 133 259 2.60e-20 97.4
Msa0971090 AT3G48187.1 28.061 196 109 4 263 449 101 273 1.38e-14 79.0

Find 194 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTTCCTGAACCTGATTT+TGG 0.131227 6_4:+2752646 None:intergenic
TTCTCACTTGTTTCCACTAT+TGG 0.202116 6_4:+2753591 None:intergenic
TCATCAAAATTATCCTTAAA+AGG 0.203644 6_4:+2753135 None:intergenic
CCCCTTCTTGCCGCTGGTCT+TGG 0.225027 6_4:+2751742 None:intergenic
TTTCTCTTCCTTCCAGTTCC+AGG 0.230105 6_4:+2751887 None:intergenic
GAAAAGCATCGCTGACATTA+TGG 0.243680 6_4:-2752602 Msa0971090:CDS
TCTGGTTGCAATTAAGTCTA+AGG 0.249968 6_4:-2752521 Msa0971090:CDS
CTTTCTCATCATCTGGTGTT+TGG 0.275619 6_4:+2752098 None:intergenic
CTTCTTGTCTTGTGAAGGTT+TGG 0.278613 6_4:+2751673 None:intergenic
CTGAATCGATGGAACCATTT+GGG 0.308664 6_4:-2754094 Msa0971090:CDS
GATTGATCAAGCTCAGATTC+TGG 0.308922 6_4:+2751860 None:intergenic
CTCTTGGTAGCTTACTTTGA+TGG 0.313271 6_4:-2753192 Msa0971090:CDS
GAGCGAGGTGAAAGGTCTTT+TGG 0.315567 6_4:-2751501 Msa0971090:CDS
CTCTCACTTGCCTCCACTAT+TGG 0.331300 6_4:+2753483 None:intergenic
AGGGTTTCTTTCTCATCATC+TGG 0.332565 6_4:+2752091 None:intergenic
GGATAGTGAGGAGGGAGAAA+AGG 0.332631 6_4:-2753544 Msa0971090:CDS
TATTGATATTGCTAGTGTTC+TGG 0.336830 6_4:-2752851 Msa0971090:CDS
TTCTCGCTTATCTCCACAAT+TGG 0.342327 6_4:+2753687 None:intergenic
ATGCTCTCTGTGCCACTATC+AGG 0.344127 6_4:+2752934 None:intergenic
AATGATTCCCCGGTGAATAA+TGG 0.346633 6_4:-2753936 Msa0971090:CDS
GAAGGAACCTTGACTTTCTC+TGG 0.349916 6_4:+2752064 None:intergenic
TCTACCTTTGTCTTGAAATC+AGG 0.353557 6_4:+2751524 None:intergenic
TTCTGCTTTCTTCTACGGTT+CGG 0.373335 6_4:+2752622 None:intergenic
GCTGAAAATGTTATGGTTGA+AGG 0.374647 6_4:-2754056 Msa0971090:CDS
TTCAAGTCCGAGAACCCGTT+TGG 0.377020 6_4:+2752750 None:intergenic
TAGTTTAGCTGAAAATGTTA+TGG 0.387200 6_4:-2754063 Msa0971090:CDS
GATAGTGAGGAGGGAGAAAA+GGG 0.387448 6_4:-2753543 Msa0971090:CDS
GTGCCCCTCCTTGACATTTG+TGG 0.393072 6_4:+2752001 None:intergenic
AAGAGAAAAGAGTTGCTTGC+AGG 0.395656 6_4:-2752445 Msa0971090:CDS
AAAAGCATCGCTGACATTAT+GGG 0.401533 6_4:-2752601 Msa0971090:CDS
CCTTGACTTTCTCTGGATCA+AGG 0.404674 6_4:+2752071 None:intergenic
TGCAAGTGATGATGAAGTTC+TGG 0.405456 6_4:-2752539 Msa0971090:CDS
GTGTCTTCTTTGTTGAAAAC+GGG 0.409749 6_4:-2753786 Msa0971090:CDS
AGTCGTCCGTTTGTTGTGGC+GGG 0.411945 6_4:-2753024 Msa0971090:CDS
ATCGGTCCCCTTCTTGCCGC+TGG 0.412154 6_4:+2751736 None:intergenic
AATGAGAAGGATAGTGAGGA+GGG 0.420006 6_4:-2753552 Msa0971090:CDS
ATGATTCCCCGGTGAATAAT+GGG 0.423865 6_4:-2753935 Msa0971090:CDS
TCATCCGTGGTGGCCAGGTC+GGG 0.423902 6_4:-2753271 Msa0971090:CDS
GGTGTCTTCTTTGTTGAAAA+CGG 0.424689 6_4:-2753787 Msa0971090:CDS
GAGATGGTGTGGCTGGAGTT+AGG 0.425440 6_4:+2751639 None:intergenic
TCTTTCTTCTTGTCTTGTGA+AGG 0.429340 6_4:+2751668 None:intergenic
GTCATACAGCAGAAACTTCA+AGG 0.429955 6_4:-2751584 Msa0971090:CDS
GAGGATCCCAAACGGGTTCT+CGG 0.430303 6_4:-2752757 Msa0971090:CDS
ACTGAATCGATGGAACCATT+TGG 0.431119 6_4:-2754095 Msa0971090:CDS
GCCGAAAGAACCAAATGAAA+AGG 0.433551 6_4:-2752287 Msa0971090:CDS
GCAGGAGAAGAATGAGCTTA+AGG 0.435652 6_4:-2754027 Msa0971090:CDS
GTGGAAAAGAAAGCTGTGAC+AGG 0.440805 6_4:-2752399 Msa0971090:CDS
TTCGGCGGTTACACTTGAAC+CGG 0.441099 6_4:-2752911 Msa0971090:CDS
ACCAAGACCAGCGGCAAGAA+GGG 0.445474 6_4:-2751743 Msa0971090:CDS
TCAAGTCCGAGAACCCGTTT+GGG 0.445752 6_4:+2752751 None:intergenic
ATATCACCTAGCGAAGATTC+TGG 0.445815 6_4:-2751830 Msa0971090:CDS
TTGACCCCAAAATCAGGTTC+AGG 0.446624 6_4:-2752652 Msa0971090:CDS
GACTGTTGAGGTTCCAATAG+TGG 0.448213 6_4:-2753604 Msa0971090:CDS
AACGGGAAGGAGAATGAGGA+GGG 0.451447 6_4:-2753648 Msa0971090:CDS
AGTCCTCTTCAAACGGCCCT+TGG 0.454433 6_4:+2752689 None:intergenic
GTCCTCTTCAAACGGCCCTT+GGG 0.454567 6_4:+2752690 None:intergenic
TTTGAAGGAGAATGATTCTC+AGG 0.456489 6_4:-2753964 Msa0971090:CDS
AGGGGCAAATCGCAGCATTC+AGG 0.456509 6_4:-2752379 Msa0971090:CDS
AACAGCATAGGTGAAAGCTT+TGG 0.458113 6_4:+2753092 None:intergenic
AATGAAGCTGAACCTGGAAC+TGG 0.462625 6_4:-2751899 Msa0971090:CDS
CTGCCATTGACCCCAAAATC+AGG 0.463002 6_4:-2752658 Msa0971090:CDS
GTCATCCGTGGTGGCCAGGT+CGG 0.463100 6_4:-2753272 Msa0971090:CDS
TAGTGGCACAGAGAGCATTT+CGG 0.469354 6_4:-2752929 Msa0971090:CDS
TATTGCTAGTGTTCTGGAGC+TGG 0.469362 6_4:-2752845 Msa0971090:CDS
AAGAGTCATCCGTGGTGGCC+AGG 0.472435 6_4:-2753276 Msa0971090:CDS
AAACTAGTTTCAACCCCAAA+TGG 0.472605 6_4:+2754080 None:intergenic
AGAGACTTTGTGAAGGTAAG+AGG 0.473351 6_4:-2752202 Msa0971090:CDS
TTTGAAGGCGAATGACTCTC+AGG 0.474527 6_4:-2753838 Msa0971090:CDS
GTCTATTGAGGTACCAATAG+TGG 0.480190 6_4:-2753496 Msa0971090:CDS
ATATAAGTTACCTTGTTATG+AGG 0.486781 6_4:-2752776 Msa0971090:CDS
TTGATGCAAAAGATAAGGAA+TGG 0.488934 6_4:-2752564 Msa0971090:CDS
TTGTTATGAGGATCCCAAAC+GGG 0.489406 6_4:-2752764 Msa0971090:CDS
CTTGACTTTCTCTGGATCAA+GGG 0.492651 6_4:+2752072 None:intergenic
TTTGTGAAGGTAAGAGGTGC+TGG 0.495255 6_4:-2752196 Msa0971090:CDS
ACTTTGATGGAACATTTGCT+TGG 0.495401 6_4:-2753179 Msa0971090:CDS
ATGTTGATATTGAAGTGAAC+GGG 0.496688 6_4:-2753665 Msa0971090:CDS
GATGAGTCGTCCGTTTGTTG+TGG 0.497438 6_4:-2753028 Msa0971090:CDS
AGCTGGAAATATTGAAGGCT+CGG 0.497817 6_4:-2752828 Msa0971090:CDS
GAATACAATGAAGCTGAACC+TGG 0.498419 6_4:-2751905 Msa0971090:CDS
GACTGTGGAGATTCCAATTG+TGG 0.500206 6_4:-2753700 Msa0971090:CDS
AACAAAGATGACAATTGTGA+TGG 0.500623 6_4:-2753420 Msa0971090:CDS
TCTGGAGCTGGAAATATTGA+AGG 0.502048 6_4:-2752833 Msa0971090:CDS
CAAGAAGCTGTAAATGAGGT+TGG 0.503519 6_4:-2753069 Msa0971090:CDS
TTTGACAGAATTTCGGCTGA+AGG 0.505616 6_4:+2752046 None:intergenic
ACAGCAGAAACTTCAAGGTC+TGG 0.505797 6_4:-2751579 Msa0971090:CDS
GAAACAAAAGAATAGACTCT+TGG 0.505954 6_4:-2753208 Msa0971090:CDS
GTCGTCCGTTTGTTGTGGCG+GGG 0.506854 6_4:-2753023 Msa0971090:CDS
CAGTGAGGCATTTCAAGAGT+TGG 0.507802 6_4:-2752143 Msa0971090:CDS
GACTATTGAGGATTCAATAG+TGG 0.508888 6_4:-2753388 Msa0971090:CDS
AGCCACACCATCTCTGTCAC+AGG 0.510870 6_4:-2751630 Msa0971090:CDS
TCAGGTTGTGAATGATTCCC+CGG 0.512345 6_4:-2753946 Msa0971090:CDS
GATGAATGAGAAGGATAGTG+AGG 0.516877 6_4:-2753556 Msa0971090:CDS
GTCTGAATTCGCTCCAATGT+TGG 0.517774 6_4:-2752992 Msa0971090:CDS
TCGTCCGTTTGTTGTGGCGG+GGG 0.517804 6_4:-2753022 Msa0971090:CDS
TCTTCAAACGGCCCTTGGGA+TGG 0.521494 6_4:+2752694 None:intergenic
AGTGAACGGGAAGGAGAATG+AGG 0.522445 6_4:-2753652 Msa0971090:CDS
AGCGGAGAGGAAAACGATGA+AGG 0.522589 6_4:-2752313 Msa0971090:CDS
AGATGTTGATGCAAAAGATA+AGG 0.523242 6_4:-2752569 Msa0971090:CDS
GAATGAGAAGGATAGTGAGG+AGG 0.523714 6_4:-2753553 Msa0971090:CDS
GAGAACATCAGCGGTGGGAG+CGG 0.524254 6_4:-2752331 Msa0971090:CDS
AACCAAGACCAGCGGCAAGA+AGG 0.531503 6_4:-2751744 Msa0971090:CDS
CCGAAAGAACCAAATGAAAA+GGG 0.533668 6_4:-2752286 Msa0971090:CDS
GTAGAGTAGTCCTCTTCAAA+CGG 0.540996 6_4:+2752682 None:intergenic
ACTGATACAGAGACTGTAAG+AGG 0.542096 6_4:-2752421 Msa0971090:CDS
CCAAGACCAGCGGCAAGAAG+GGG 0.545038 6_4:-2751742 Msa0971090:CDS
GCGGAGAGGAAAACGATGAA+GGG 0.547080 6_4:-2752312 Msa0971090:CDS
AATGTTGATATTGAAGTGAA+CGG 0.548378 6_4:-2753666 Msa0971090:CDS
GAAAAGGGTGAAAATTGTGA+TGG 0.548470 6_4:-2753528 Msa0971090:CDS
TTAAAAGGCTTCAATTGTGA+CGG 0.549559 6_4:+2753150 None:intergenic
GAGTCGTCCGTTTGTTGTGG+CGG 0.551345 6_4:-2753025 Msa0971090:CDS
GAAGACACCCCATTATTCAC+CGG 0.552105 6_4:+2753927 None:intergenic
TGTGACAGAGATGGTGTGGC+TGG 0.552295 6_4:+2751632 None:intergenic
GAAATCAGGCGATTTGTCGT+CGG 0.552919 6_4:+2751538 None:intergenic
ATCCCAAGGGCCGTTTGAAG+AGG 0.558737 6_4:-2752692 Msa0971090:CDS
AAGCTGTAAATGAGGTTGGA+AGG 0.558828 6_4:-2753065 Msa0971090:CDS
ACTGAGAAGGAGAGCGCGGA+AGG 0.560275 6_4:-2753444 Msa0971090:CDS
GACGATCAACTTAGATGTCT+CGG 0.562618 6_4:+2751604 None:intergenic
AAAGCATCGCTGACATTATG+GGG 0.562780 6_4:-2752600 Msa0971090:CDS
CTGGTTGCAATTAAGTCTAA+GGG 0.563006 6_4:-2752520 Msa0971090:CDS
CGCTTAGTCCACAAATGTCA+AGG 0.564092 6_4:-2752009 Msa0971090:CDS
GCAAGTTCCGACGCATCAGA+CGG 0.564834 6_4:+2753240 None:intergenic
TATGGTTGAAGGTTCAGAGC+AGG 0.565252 6_4:-2754045 Msa0971090:CDS
TTGACGATTTGATTGATGAA+AGG 0.567900 6_4:-2753338 Msa0971090:CDS
TGTGATAAGAAAGTCAAAGA+AGG 0.573083 6_4:-2753738 Msa0971090:CDS
AGTGGAGGCTAGTGAGAGCA+TGG 0.574743 6_4:-2753370 Msa0971090:CDS
TGATGCAAAAGATAAGGAAT+GGG 0.574961 6_4:-2752563 Msa0971090:CDS
TTGAAACTCGAGGAGAAAGC+AGG 0.575194 6_4:+2752173 None:intergenic
CTTGTTATGAGGATCCCAAA+CGG 0.575919 6_4:-2752765 Msa0971090:CDS
GGAAAAGAAAGCTGTGACAG+GGG 0.576442 6_4:-2752397 Msa0971090:CDS
GAACGGGAAGGAGAATGAGG+AGG 0.577213 6_4:-2753649 Msa0971090:CDS
AAGGCTTCAATTGTGACGGA+TGG 0.578767 6_4:+2753154 None:intergenic
TGGACCAGCCAAGAAAAGAA+AGG 0.581389 6_4:-2751810 Msa0971090:CDS
AAGGTAGAGAGCGAGGTGAA+AGG 0.582258 6_4:-2751509 Msa0971090:CDS
TGGGAAGATCGAGACTATTG+AGG 0.585945 6_4:-2753400 Msa0971090:CDS
AGCTGTAAATGAGGTTGGAA+GGG 0.590294 6_4:-2753064 Msa0971090:CDS
ACAAAGATGACAATTGTGAT+GGG 0.590514 6_4:-2753419 Msa0971090:CDS
GCAGTTGAAGCACCATCCCA+AGG 0.591867 6_4:-2752706 Msa0971090:CDS
AAAAGGGTGAAAATTGTGAT+GGG 0.593063 6_4:-2753527 Msa0971090:CDS
TGAATCGATGGAACCATTTG+GGG 0.594772 6_4:-2754093 Msa0971090:CDS
TAGTCCACAAATGTCAAGGA+GGG 0.595379 6_4:-2752005 Msa0971090:CDS
CGATGTTGAAATGACTGAGA+AGG 0.596335 6_4:-2753457 Msa0971090:CDS
ACTTGAGAAAGTAACTCAGC+CGG 0.596936 6_4:+2752892 None:intergenic
GCTGGTCCAGAATCTTCGCT+AGG 0.598905 6_4:+2751824 None:intergenic
TTATGATCCGTCTGATGCGT+CGG 0.599363 6_4:-2753247 Msa0971090:CDS
AAGACACCCCATTATTCACC+GGG 0.600301 6_4:+2753928 None:intergenic
CTGTTATACTTTGAAACTCG+AGG 0.601039 6_4:+2752163 None:intergenic
TACAGCTTCTTGAACAGCAT+AGG 0.602664 6_4:+2753080 None:intergenic
TCTCTGATTGAAGTAGTGAA+AGG 0.604217 6_4:+2752220 None:intergenic
AAATGAGGTTGGAAGGGTGC+TGG 0.605434 6_4:-2753058 Msa0971090:CDS
CGTTTGGGATCCTCATAACA+AGG 0.612389 6_4:+2752766 None:intergenic
TTTGATGATATGGTGGGACA+AGG 0.614353 6_4:-2753120 Msa0971090:CDS
TGGAAAAGAAAGCTGTGACA+GGG 0.618152 6_4:-2752398 Msa0971090:CDS
TAAACCCGACCTGGCCACCA+CGG 0.618975 6_4:+2753267 None:intergenic
AGAAGTTCATTGTATCGCGA+AGG 0.620174 6_4:-2751941 Msa0971090:CDS
TGATATTGAAGTGAACGGGA+AGG 0.622379 6_4:-2753661 Msa0971090:CDS
GACGGATCATAAACCCGACC+TGG 0.623787 6_4:+2753258 None:intergenic
CAAGACAAAGGTAGAGAGCG+AGG 0.627059 6_4:-2751516 Msa0971090:CDS
ATCGCCTGATTTCAAGACAA+AGG 0.628439 6_4:-2751528 Msa0971090:CDS
GGTAATGAGAACATCAGCGG+TGG 0.629748 6_4:-2752337 Msa0971090:CDS
TATTGAGGATTCAATAGTGG+AGG 0.631691 6_4:-2753385 Msa0971090:CDS
TGGGAAGATAGAGTCTATTG+AGG 0.636228 6_4:-2753508 Msa0971090:CDS
TGTGGTTGATACTGAATCGA+TGG 0.639717 6_4:-2754105 Msa0971090:CDS
TTGAAAACGGGAGAAAACGA+TGG 0.643487 6_4:-2753774 Msa0971090:CDS
TTCAATCAGAGACTTTGTGA+AGG 0.644058 6_4:-2752209 Msa0971090:CDS
AGTCCACAAATGTCAAGGAG+GGG 0.647484 6_4:-2752004 Msa0971090:CDS
CTGATTGAAGTAGTGAAAGG+AGG 0.649899 6_4:+2752223 None:intergenic
TCGGTACCCTGTGACAGAGA+TGG 0.651603 6_4:+2751623 None:intergenic
TGTTCAAGAAGCTGTAAATG+AGG 0.656142 6_4:-2753073 Msa0971090:CDS
AAGCTGAACCTGGAACTGGA+AGG 0.657278 6_4:-2751895 Msa0971090:CDS
TATTGAGGTACCAATAGTGG+AGG 0.665817 6_4:-2753493 Msa0971090:CDS
GATACAGAGACTGTAAGAGG+TGG 0.665933 6_4:-2752418 Msa0971090:CDS
CATCAGCGGTGGGAGCGGAG+AGG 0.666693 6_4:-2752326 Msa0971090:CDS
CAGTTGAAGCACCATCCCAA+GGG 0.667937 6_4:-2752705 Msa0971090:CDS
ACCCTGTGACAGAGATGGTG+TGG 0.668589 6_4:+2751628 None:intergenic
GTAATGAGAACATCAGCGGT+GGG 0.671348 6_4:-2752336 Msa0971090:CDS
CAAATCGCAGCATTCAGGTG+AGG 0.675770 6_4:-2752374 Msa0971090:CDS
TTAGTCCACAAATGTCAAGG+AGG 0.675813 6_4:-2752006 Msa0971090:CDS
TGATGTTGAGATGAATGAGA+AGG 0.677474 6_4:-2753565 Msa0971090:CDS
GCCACACCATCTCTGTCACA+GGG 0.681280 6_4:-2751629 Msa0971090:CDS
TGGCACAGAGAGCATTTCGG+CGG 0.682197 6_4:-2752926 Msa0971090:CDS
CCTTGATCCAGAGAAAGTCA+AGG 0.684171 6_4:-2752071 Msa0971090:CDS
TGATTCTGAAGTGAATAATG+AGG 0.686144 6_4:-2753808 Msa0971090:CDS
AATGACTGAGAAGGAGAGCG+CGG 0.688964 6_4:-2753448 Msa0971090:CDS
AGATTAAGAGTCATCCGTGG+TGG 0.700219 6_4:-2753281 Msa0971090:CDS
TCTGGTAATGAGAACATCAG+CGG 0.703698 6_4:-2752340 Msa0971090:CDS
GCTCGTGAAACCAAGACCAG+CGG 0.704734 6_4:-2751752 Msa0971090:CDS
AAGCATCGCTGACATTATGG+GGG 0.710590 6_4:-2752599 Msa0971090:CDS
ACGGGAAGGAGAATGAGGAG+GGG 0.710995 6_4:-2753647 Msa0971090:CDS
TCTTCTGAGATGAATAATGA+CGG 0.712707 6_4:-2753909 Msa0971090:CDS
TTTGGAGGATGTGAACAACA+TGG 0.726968 6_4:-2751483 Msa0971090:CDS
TGATTCCCCGGTGAATAATG+GGG 0.731764 6_4:-2753934 Msa0971090:CDS
AGTTTCAAAGTATAACAGTG+AGG 0.743340 6_4:-2752158 Msa0971090:CDS
GAAAGATTAAGAGTCATCCG+TGG 0.746341 6_4:-2753284 Msa0971090:CDS
AGACACCCCATTATTCACCG+GGG 0.792139 6_4:+2753929 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATCAAAATTATCCTTAAA+AGG + chr6_4:2752441-2752460 None:intergenic 20.0%
!!! TAAGGATAATTTTGATGATA+TGG - chr6_4:2752443-2752462 Msa0971090:CDS 20.0%
! TAGTTTAGCTGAAAATGTTA+TGG - chr6_4:2751510-2751529 Msa0971090:CDS 25.0%
! AATGTTGATATTGAAGTGAA+CGG - chr6_4:2751907-2751926 Msa0971090:CDS 25.0%
!!! GATAATTTTGATGATATGGT+GGG - chr6_4:2752447-2752466 Msa0971090:CDS 25.0%
!! ATATAAGTTACCTTGTTATG+AGG - chr6_4:2752797-2752816 Msa0971090:CDS 25.0%
!! TCTTCTGAGATGAATAATGA+CGG - chr6_4:2751664-2751683 Msa0971090:CDS 30.0%
!! TGATTCTGAAGTGAATAATG+AGG - chr6_4:2751765-2751784 Msa0971090:CDS 30.0%
TGTGATAAGAAAGTCAAAGA+AGG - chr6_4:2751835-2751854 Msa0971090:CDS 30.0%
TGATGAAAAAATTCAGACTG+TGG - chr6_4:2751858-2751877 Msa0971090:CDS 30.0%
ATGTTGATATTGAAGTGAAC+GGG - chr6_4:2751908-2751927 Msa0971090:CDS 30.0%
AAAAGGGTGAAAATTGTGAT+GGG - chr6_4:2752046-2752065 Msa0971090:CDS 30.0%
AACAAAGATGACAATTGTGA+TGG - chr6_4:2752153-2752172 Msa0971090:CDS 30.0%
ACAAAGATGACAATTGTGAT+GGG - chr6_4:2752154-2752173 Msa0971090:CDS 30.0%
TTGACGATTTGATTGATGAA+AGG - chr6_4:2752235-2752254 Msa0971090:CDS 30.0%
GAAACAAAAGAATAGACTCT+TGG - chr6_4:2752365-2752384 Msa0971090:CDS 30.0%
TTAAAAGGCTTCAATTGTGA+CGG + chr6_4:2752426-2752445 None:intergenic 30.0%
!! GGATAATTTTGATGATATGG+TGG - chr6_4:2752446-2752465 Msa0971090:CDS 30.0%
AAAAATTCAGGAATCAAGGA+AGG - chr6_4:2752606-2752625 Msa0971090:CDS 30.0%
TATTGATATTGCTAGTGTTC+TGG - chr6_4:2752722-2752741 Msa0971090:CDS 30.0%
! TCAGCTTTTTATCTCTCAAA+AGG - chr6_4:2752771-2752790 Msa0971090:CDS 30.0%
AGATGTTGATGCAAAAGATA+AGG - chr6_4:2753004-2753023 Msa0971090:CDS 30.0%
TTGATGCAAAAGATAAGGAA+TGG - chr6_4:2753009-2753028 Msa0971090:CDS 30.0%
TGATGCAAAAGATAAGGAAT+GGG - chr6_4:2753010-2753029 Msa0971090:CDS 30.0%
! GACAAAAAACCCTTTTCATT+TGG + chr6_4:2753299-2753318 None:intergenic 30.0%
AGTTTCAAAGTATAACAGTG+AGG - chr6_4:2753415-2753434 Msa0971090:CDS 30.0%
! GCGAATTTTTGACAGAATTT+CGG + chr6_4:2753537-2753556 None:intergenic 30.0%
! AAACTAGTTTCAACCCCAAA+TGG + chr6_4:2751496-2751515 None:intergenic 35.0%
GCTGAAAATGTTATGGTTGA+AGG - chr6_4:2751517-2751536 Msa0971090:CDS 35.0%
!! TGTTTTCAAGACTGAGGTTT+CGG - chr6_4:2751585-2751604 Msa0971090:CDS 35.0%
TTTGAAGGAGAATGATTCTC+AGG - chr6_4:2751609-2751628 Msa0971090:CDS 35.0%
GGTGTCTTCTTTGTTGAAAA+CGG - chr6_4:2751786-2751805 Msa0971090:CDS 35.0%
GTGTCTTCTTTGTTGAAAAC+GGG - chr6_4:2751787-2751806 Msa0971090:CDS 35.0%
TGAAAAAATTGCGACTGTTG+AGG - chr6_4:2751957-2751976 Msa0971090:CDS 35.0%
TTCTCACTTGTTTCCACTAT+TGG + chr6_4:2751985-2752004 None:intergenic 35.0%
TGATGTTGAGATGAATGAGA+AGG - chr6_4:2752008-2752027 Msa0971090:CDS 35.0%
GAAAAGGGTGAAAATTGTGA+TGG - chr6_4:2752045-2752064 Msa0971090:CDS 35.0%
GACTATTGAGGATTCAATAG+TGG - chr6_4:2752185-2752204 Msa0971090:CDS 35.0%
TATTGAGGATTCAATAGTGG+AGG - chr6_4:2752188-2752207 Msa0971090:CDS 35.0%
! TTTCTGTTGGCGATTTTGTT+TGG - chr6_4:2752265-2752284 Msa0971090:CDS 35.0%
!! TTCTGTTGGCGATTTTGTTT+GGG - chr6_4:2752266-2752285 Msa0971090:CDS 35.0%
ACTTTGATGGAACATTTGCT+TGG - chr6_4:2752394-2752413 Msa0971090:CDS 35.0%
! GTCACAATTGAAGCCTTTTA+AGG - chr6_4:2752425-2752444 Msa0971090:CDS 35.0%
TGTTCAAGAAGCTGTAAATG+AGG - chr6_4:2752500-2752519 Msa0971090:CDS 35.0%
! GCTTTTTATCTCTCAAAAGG+AGG - chr6_4:2752774-2752793 Msa0971090:CDS 35.0%
! TACTTCCTGAACCTGATTTT+GGG + chr6_4:2752929-2752948 None:intergenic 35.0%
! TGCTTTTCTGCTTTCTTCTA+CGG + chr6_4:2752959-2752978 None:intergenic 35.0%
!! AAAAGCATCGCTGACATTAT+GGG - chr6_4:2752972-2752991 Msa0971090:CDS 35.0%
TCTGGTTGCAATTAAGTCTA+AGG - chr6_4:2753052-2753071 Msa0971090:CDS 35.0%
CTGGTTGCAATTAAGTCTAA+GGG - chr6_4:2753053-2753072 Msa0971090:CDS 35.0%
! AACTCTTTTCTCTTCTGAAC+TGG + chr6_4:2753122-2753141 None:intergenic 35.0%
!!! CCCTTTTCATTTGGTTCTTT+CGG + chr6_4:2753290-2753309 None:intergenic 35.0%
CCGAAAGAACCAAATGAAAA+GGG - chr6_4:2753287-2753306 Msa0971090:CDS 35.0%
!!! AGGGTTTTTTGTCAAGAGAA+AGG - chr6_4:2753306-2753325 Msa0971090:CDS 35.0%
TCTCTGATTGAAGTAGTGAA+AGG + chr6_4:2753356-2753375 None:intergenic 35.0%
TTCAATCAGAGACTTTGTGA+AGG - chr6_4:2753364-2753383 Msa0971090:CDS 35.0%
!! CTGTTATACTTTGAAACTCG+AGG + chr6_4:2753413-2753432 None:intergenic 35.0%
! AGTTCTCTCCTTTCTTTTCT+TGG + chr6_4:2753774-2753793 None:intergenic 35.0%
! TTGTCCTCCAGATTTTTCAT+CGG + chr6_4:2753858-2753877 None:intergenic 35.0%
TCTTTCTTCTTGTCTTGTGA+AGG + chr6_4:2753908-2753927 None:intergenic 35.0%
TCTACCTTTGTCTTGAAATC+AGG + chr6_4:2754052-2754071 None:intergenic 35.0%
! TGTGGTTGATACTGAATCGA+TGG - chr6_4:2751468-2751487 Msa0971090:CDS 40.0%
ACTGAATCGATGGAACCATT+TGG - chr6_4:2751478-2751497 Msa0971090:CDS 40.0%
CTGAATCGATGGAACCATTT+GGG - chr6_4:2751479-2751498 Msa0971090:CDS 40.0%
TGAATCGATGGAACCATTTG+GGG - chr6_4:2751480-2751499 Msa0971090:CDS 40.0%
!! GAGTAGTGTTTTCAAGACTG+AGG - chr6_4:2751579-2751598 Msa0971090:CDS 40.0%
AATGATTCCCCGGTGAATAA+TGG - chr6_4:2751637-2751656 Msa0971090:CDS 40.0%
ATGATTCCCCGGTGAATAAT+GGG - chr6_4:2751638-2751657 Msa0971090:CDS 40.0%
! GACTGAGGTTTCGATTTTGA+AGG - chr6_4:2751720-2751739 Msa0971090:CDS 40.0%
TTGAAAACGGGAGAAAACGA+TGG - chr6_4:2751799-2751818 Msa0971090:CDS 40.0%
TTCTCGCTTATCTCCACAAT+TGG + chr6_4:2751889-2751908 None:intergenic 40.0%
TGATATTGAAGTGAACGGGA+AGG - chr6_4:2751912-2751931 Msa0971090:CDS 40.0%
GATGAATGAGAAGGATAGTG+AGG - chr6_4:2752017-2752036 Msa0971090:CDS 40.0%
AATGAGAAGGATAGTGAGGA+GGG - chr6_4:2752021-2752040 Msa0971090:CDS 40.0%
TGGGAAGATAGAGTCTATTG+AGG - chr6_4:2752065-2752084 Msa0971090:CDS 40.0%
! GTCTATTGAGGTACCAATAG+TGG - chr6_4:2752077-2752096 Msa0971090:CDS 40.0%
! TATTGAGGTACCAATAGTGG+AGG - chr6_4:2752080-2752099 Msa0971090:CDS 40.0%
CGATGTTGAAATGACTGAGA+AGG - chr6_4:2752116-2752135 Msa0971090:CDS 40.0%
!! GAAAGGTGTGACTTTTCTGT+TGG - chr6_4:2752252-2752271 Msa0971090:CDS 40.0%
!! TCTGTTGGCGATTTTGTTTG+GGG - chr6_4:2752267-2752286 Msa0971090:CDS 40.0%
GAAAGATTAAGAGTCATCCG+TGG - chr6_4:2752289-2752308 Msa0971090:CDS 40.0%
! CTCTTGGTAGCTTACTTTGA+TGG - chr6_4:2752381-2752400 Msa0971090:CDS 40.0%
! TTTGATGATATGGTGGGACA+AGG - chr6_4:2752453-2752472 Msa0971090:CDS 40.0%
AACAGCATAGGTGAAAGCTT+TGG + chr6_4:2752484-2752503 None:intergenic 40.0%
TACAGCTTCTTGAACAGCAT+AGG + chr6_4:2752496-2752515 None:intergenic 40.0%
CAAGAAGCTGTAAATGAGGT+TGG - chr6_4:2752504-2752523 Msa0971090:CDS 40.0%
AAGCTGTAAATGAGGTTGGA+AGG - chr6_4:2752508-2752527 Msa0971090:CDS 40.0%
AGCTGTAAATGAGGTTGGAA+GGG - chr6_4:2752509-2752528 Msa0971090:CDS 40.0%
! CCTGAATTTTTCGCCAACAT+TGG + chr6_4:2752597-2752616 None:intergenic 40.0%
CCAATGTTGGCGAAAAATTC+AGG - chr6_4:2752594-2752613 Msa0971090:CDS 40.0%
GGCGAAAAATTCAGGAATCA+AGG - chr6_4:2752602-2752621 Msa0971090:CDS 40.0%
ACTTGAGAAAGTAACTCAGC+CGG + chr6_4:2752684-2752703 None:intergenic 40.0%
! TCTGGAGCTGGAAATATTGA+AGG - chr6_4:2752740-2752759 Msa0971090:CDS 40.0%
AGCTGGAAATATTGAAGGCT+CGG - chr6_4:2752745-2752764 Msa0971090:CDS 40.0%
! CTTGTTATGAGGATCCCAAA+CGG - chr6_4:2752808-2752827 Msa0971090:CDS 40.0%
TTGTTATGAGGATCCCAAAC+GGG - chr6_4:2752809-2752828 Msa0971090:CDS 40.0%
GTAGAGTAGTCCTCTTCAAA+CGG + chr6_4:2752894-2752913 None:intergenic 40.0%
! ACTTCCTGAACCTGATTTTG+GGG + chr6_4:2752928-2752947 None:intergenic 40.0%
! CTACTTCCTGAACCTGATTT+TGG + chr6_4:2752930-2752949 None:intergenic 40.0%
TTCTGCTTTCTTCTACGGTT+CGG + chr6_4:2752954-2752973 None:intergenic 40.0%
!! GAAAAGCATCGCTGACATTA+TGG - chr6_4:2752971-2752990 Msa0971090:CDS 40.0%
!! AAAGCATCGCTGACATTATG+GGG - chr6_4:2752973-2752992 Msa0971090:CDS 40.0%
! TGCAAGTGATGATGAAGTTC+TGG - chr6_4:2753034-2753053 Msa0971090:CDS 40.0%
AAAAAAGACAACGACGATGC+AGG - chr6_4:2753086-2753105 Msa0971090:CDS 40.0%
AAAAAGACAACGACGATGCA+GGG - chr6_4:2753087-2753106 Msa0971090:CDS 40.0%
AAGAGAAAAGAGTTGCTTGC+AGG - chr6_4:2753128-2753147 Msa0971090:CDS 40.0%
ACTGATACAGAGACTGTAAG+AGG - chr6_4:2753152-2753171 Msa0971090:CDS 40.0%
TGGAAAAGAAAGCTGTGACA+GGG - chr6_4:2753175-2753194 Msa0971090:CDS 40.0%
! TCTGGTAATGAGAACATCAG+CGG - chr6_4:2753233-2753252 Msa0971090:CDS 40.0%
GCCGAAAGAACCAAATGAAA+AGG - chr6_4:2753286-2753305 Msa0971090:CDS 40.0%
CTGATTGAAGTAGTGAAAGG+AGG + chr6_4:2753353-2753372 None:intergenic 40.0%
AGAGACTTTGTGAAGGTAAG+AGG - chr6_4:2753371-2753390 Msa0971090:CDS 40.0%
CTTTCTCATCATCTGGTGTT+TGG + chr6_4:2753478-2753497 None:intergenic 40.0%
AGGGTTTCTTTCTCATCATC+TGG + chr6_4:2753485-2753504 None:intergenic 40.0%
CTTGACTTTCTCTGGATCAA+GGG + chr6_4:2753504-2753523 None:intergenic 40.0%
TTTGACAGAATTTCGGCTGA+AGG + chr6_4:2753530-2753549 None:intergenic 40.0%
TTAGTCCACAAATGTCAAGG+AGG - chr6_4:2753567-2753586 Msa0971090:CDS 40.0%
TAGTCCACAAATGTCAAGGA+GGG - chr6_4:2753568-2753587 Msa0971090:CDS 40.0%
AGAAGTTCATTGTATCGCGA+AGG - chr6_4:2753632-2753651 Msa0971090:CDS 40.0%
GAATACAATGAAGCTGAACC+TGG - chr6_4:2753668-2753687 Msa0971090:CDS 40.0%
GATTGATCAAGCTCAGATTC+TGG + chr6_4:2753716-2753735 None:intergenic 40.0%
ATATCACCTAGCGAAGATTC+TGG - chr6_4:2753743-2753762 Msa0971090:CDS 40.0%
CTTCTTGTCTTGTGAAGGTT+TGG + chr6_4:2753903-2753922 None:intergenic 40.0%
GACGATCAACTTAGATGTCT+CGG + chr6_4:2753972-2753991 None:intergenic 40.0%
GTCATACAGCAGAAACTTCA+AGG - chr6_4:2753989-2754008 Msa0971090:CDS 40.0%
ATCGCCTGATTTCAAGACAA+AGG - chr6_4:2754045-2754064 Msa0971090:CDS 40.0%
TTTGGAGGATGTGAACAACA+TGG - chr6_4:2754090-2754109 Msa0971090:CDS 40.0%
TATGGTTGAAGGTTCAGAGC+AGG - chr6_4:2751528-2751547 Msa0971090:CDS 45.0%
GCAGGAGAAGAATGAGCTTA+AGG - chr6_4:2751546-2751565 Msa0971090:CDS 45.0%
!! GACTGAGGTTTCGGTTTTGA+AGG - chr6_4:2751594-2751613 Msa0971090:CDS 45.0%
! TCAGGTTGTGAATGATTCCC+CGG - chr6_4:2751627-2751646 Msa0971090:CDS 45.0%
TGATTCCCCGGTGAATAATG+GGG - chr6_4:2751639-2751658 Msa0971090:CDS 45.0%
AAGACACCCCATTATTCACC+GGG + chr6_4:2751648-2751667 None:intergenic 45.0%
GAAGACACCCCATTATTCAC+CGG + chr6_4:2751649-2751668 None:intergenic 45.0%
TTTGAAGGCGAATGACTCTC+AGG - chr6_4:2751735-2751754 Msa0971090:CDS 45.0%
GACTGTGGAGATTCCAATTG+TGG - chr6_4:2751873-2751892 Msa0971090:CDS 45.0%
GACTGTTGAGGTTCCAATAG+TGG - chr6_4:2751969-2751988 Msa0971090:CDS 45.0%
GAATGAGAAGGATAGTGAGG+AGG - chr6_4:2752020-2752039 Msa0971090:CDS 45.0%
GATAGTGAGGAGGGAGAAAA+GGG - chr6_4:2752030-2752049 Msa0971090:CDS 45.0%
TGGGAAGATCGAGACTATTG+AGG - chr6_4:2752173-2752192 Msa0971090:CDS 45.0%
AGATTAAGAGTCATCCGTGG+TGG - chr6_4:2752292-2752311 Msa0971090:CDS 45.0%
TTATGATCCGTCTGATGCGT+CGG - chr6_4:2752326-2752345 Msa0971090:CDS 45.0%
! AAGGCTTCAATTGTGACGGA+TGG + chr6_4:2752422-2752441 None:intergenic 45.0%
GTCTGAATTCGCTCCAATGT+TGG - chr6_4:2752581-2752600 Msa0971090:CDS 45.0%
!! GGTGTTTTTGTGCCTGATAG+TGG - chr6_4:2752627-2752646 Msa0971090:CDS 45.0%
!! TAGTGGCACAGAGAGCATTT+CGG - chr6_4:2752644-2752663 Msa0971090:CDS 45.0%
!! TATTGCTAGTGTTCTGGAGC+TGG - chr6_4:2752728-2752747 Msa0971090:CDS 45.0%
! CGTTTGGGATCCTCATAACA+AGG + chr6_4:2752810-2752829 None:intergenic 45.0%
!!! GAACCTGATTTTGGGGTCAA+TGG + chr6_4:2752921-2752940 None:intergenic 45.0%
TTGACCCCAAAATCAGGTTC+AGG - chr6_4:2752921-2752940 Msa0971090:CDS 45.0%
! AAGCATCGCTGACATTATGG+GGG - chr6_4:2752974-2752993 Msa0971090:CDS 45.0%
GATACAGAGACTGTAAGAGG+TGG - chr6_4:2753155-2753174 Msa0971090:CDS 45.0%
GTGGAAAAGAAAGCTGTGAC+AGG - chr6_4:2753174-2753193 Msa0971090:CDS 45.0%
GGAAAAGAAAGCTGTGACAG+GGG - chr6_4:2753176-2753195 Msa0971090:CDS 45.0%
GGTGAGGAAAAAGAAGCTTC+TGG - chr6_4:2753215-2753234 Msa0971090:CDS 45.0%
GTAATGAGAACATCAGCGGT+GGG - chr6_4:2753237-2753256 Msa0971090:CDS 45.0%
! TTTGTGAAGGTAAGAGGTGC+TGG - chr6_4:2753377-2753396 Msa0971090:CDS 45.0%
TTGAAACTCGAGGAGAAAGC+AGG + chr6_4:2753403-2753422 None:intergenic 45.0%
! CAGTGAGGCATTTCAAGAGT+TGG - chr6_4:2753430-2753449 Msa0971090:CDS 45.0%
CCTTGACTTTCTCTGGATCA+AGG + chr6_4:2753505-2753524 None:intergenic 45.0%
CCTTGATCCAGAGAAAGTCA+AGG - chr6_4:2753502-2753521 Msa0971090:CDS 45.0%
GAAGGAACCTTGACTTTCTC+TGG + chr6_4:2753512-2753531 None:intergenic 45.0%
CGCTTAGTCCACAAATGTCA+AGG - chr6_4:2753564-2753583 Msa0971090:CDS 45.0%
AGTCCACAAATGTCAAGGAG+GGG - chr6_4:2753569-2753588 Msa0971090:CDS 45.0%
AATGAAGCTGAACCTGGAAC+TGG - chr6_4:2753674-2753693 Msa0971090:CDS 45.0%
TTTCTCTTCCTTCCAGTTCC+AGG + chr6_4:2753689-2753708 None:intergenic 45.0%
TGGACCAGCCAAGAAAAGAA+AGG - chr6_4:2753763-2753782 Msa0971090:CDS 45.0%
! CTCTCCTTTCTTTTCTTGGC+TGG + chr6_4:2753770-2753789 None:intergenic 45.0%
AAGGGGACCGATGAAAAATC+TGG - chr6_4:2753848-2753867 Msa0971090:CDS 45.0%
ACAGCAGAAACTTCAAGGTC+TGG - chr6_4:2753994-2754013 Msa0971090:CDS 45.0%
GAAATCAGGCGATTTGTCGT+CGG + chr6_4:2754038-2754057 None:intergenic 45.0%
AGACACCCCATTATTCACCG+GGG + chr6_4:2751647-2751666 None:intergenic 50.0%
!! GAGTAGCGTTTTCGAGACTG+AGG - chr6_4:2751705-2751724 Msa0971090:CDS 50.0%
AGTGAACGGGAAGGAGAATG+AGG - chr6_4:2751921-2751940 Msa0971090:CDS 50.0%
AACGGGAAGGAGAATGAGGA+GGG - chr6_4:2751925-2751944 Msa0971090:CDS 50.0%
GGATAGTGAGGAGGGAGAAA+AGG - chr6_4:2752029-2752048 Msa0971090:CDS 50.0%
CTCTCACTTGCCTCCACTAT+TGG + chr6_4:2752093-2752112 None:intergenic 50.0%
AATGACTGAGAAGGAGAGCG+CGG - chr6_4:2752125-2752144 Msa0971090:CDS 50.0%
! AAATGAGGTTGGAAGGGTGC+TGG - chr6_4:2752515-2752534 Msa0971090:CDS 50.0%
! GATGAGTCGTCCGTTTGTTG+TGG - chr6_4:2752545-2752564 Msa0971090:CDS 50.0%
! ATGCTCTCTGTGCCACTATC+AGG + chr6_4:2752642-2752661 None:intergenic 50.0%
TTCGGCGGTTACACTTGAAC+CGG - chr6_4:2752662-2752681 Msa0971090:CDS 50.0%
TCAAGTCCGAGAACCCGTTT+GGG + chr6_4:2752825-2752844 None:intergenic 50.0%
TTCAAGTCCGAGAACCCGTT+TGG + chr6_4:2752826-2752845 None:intergenic 50.0%
! CAGTTGAAGCACCATCCCAA+GGG - chr6_4:2752868-2752887 Msa0971090:CDS 50.0%
CTGCCATTGACCCCAAAATC+AGG - chr6_4:2752915-2752934 Msa0971090:CDS 50.0%
CAAATCGCAGCATTCAGGTG+AGG - chr6_4:2753199-2753218 Msa0971090:CDS 50.0%
GGTAATGAGAACATCAGCGG+TGG - chr6_4:2753236-2753255 Msa0971090:CDS 50.0%
AGCGGAGAGGAAAACGATGA+AGG - chr6_4:2753260-2753279 Msa0971090:CDS 50.0%
GCGGAGAGGAAAACGATGAA+GGG - chr6_4:2753261-2753280 Msa0971090:CDS 50.0%
AAGCTGAACCTGGAACTGGA+AGG - chr6_4:2753678-2753697 Msa0971090:CDS 50.0%
GGGACCGATGAAAAATCTGG+AGG - chr6_4:2753851-2753870 Msa0971090:CDS 50.0%
CAAGACAAAGGTAGAGAGCG+AGG - chr6_4:2754057-2754076 Msa0971090:CDS 50.0%
AAGGTAGAGAGCGAGGTGAA+AGG - chr6_4:2754064-2754083 Msa0971090:CDS 50.0%
! GAGCGAGGTGAAAGGTCTTT+TGG - chr6_4:2754072-2754091 Msa0971090:CDS 50.0%
! CGAGGTGAAAGGTCTTTTGG+AGG - chr6_4:2754075-2754094 Msa0971090:CDS 50.0%
GAACGGGAAGGAGAATGAGG+AGG - chr6_4:2751924-2751943 Msa0971090:CDS 55.0%
ACGGGAAGGAGAATGAGGAG+GGG - chr6_4:2751926-2751945 Msa0971090:CDS 55.0%
AGTGGAGGCTAGTGAGAGCA+TGG - chr6_4:2752203-2752222 Msa0971090:CDS 55.0%
GACGGATCATAAACCCGACC+TGG + chr6_4:2752318-2752337 None:intergenic 55.0%
GCAAGTTCCGACGCATCAGA+CGG + chr6_4:2752336-2752355 None:intergenic 55.0%
!! GAGTCGTCCGTTTGTTGTGG+CGG - chr6_4:2752548-2752567 Msa0971090:CDS 55.0%
!! AGTCGTCCGTTTGTTGTGGC+GGG - chr6_4:2752549-2752568 Msa0971090:CDS 55.0%
!! TGGCACAGAGAGCATTTCGG+CGG - chr6_4:2752647-2752666 Msa0971090:CDS 55.0%
! GAGGATCCCAAACGGGTTCT+CGG - chr6_4:2752816-2752835 Msa0971090:CDS 55.0%
! GCAGTTGAAGCACCATCCCA+AGG - chr6_4:2752867-2752886 Msa0971090:CDS 55.0%
TCTTCAAACGGCCCTTGGGA+TGG + chr6_4:2752882-2752901 None:intergenic 55.0%
ATCCCAAGGGCCGTTTGAAG+AGG - chr6_4:2752881-2752900 Msa0971090:CDS 55.0%
GTCCTCTTCAAACGGCCCTT+GGG + chr6_4:2752886-2752905 None:intergenic 55.0%
AGTCCTCTTCAAACGGCCCT+TGG + chr6_4:2752887-2752906 None:intergenic 55.0%
CATCGCTGACATTATGGGGG+AGG - chr6_4:2752977-2752996 Msa0971090:CDS 55.0%
AGGGGCAAATCGCAGCATTC+AGG - chr6_4:2753194-2753213 Msa0971090:CDS 55.0%
GTGCCCCTCCTTGACATTTG+TGG + chr6_4:2753575-2753594 None:intergenic 55.0%
GCTGGTCCAGAATCTTCGCT+AGG + chr6_4:2753752-2753771 None:intergenic 55.0%
GCTCGTGAAACCAAGACCAG+CGG - chr6_4:2753821-2753840 Msa0971090:CDS 55.0%
AACCAAGACCAGCGGCAAGA+AGG - chr6_4:2753829-2753848 Msa0971090:CDS 55.0%
ACCAAGACCAGCGGCAAGAA+GGG - chr6_4:2753830-2753849 Msa0971090:CDS 55.0%
GAGATGGTGTGGCTGGAGTT+AGG + chr6_4:2753937-2753956 None:intergenic 55.0%
TGTGACAGAGATGGTGTGGC+TGG + chr6_4:2753944-2753963 None:intergenic 55.0%
AGCCACACCATCTCTGTCAC+AGG - chr6_4:2753943-2753962 Msa0971090:CDS 55.0%
GCCACACCATCTCTGTCACA+GGG - chr6_4:2753944-2753963 Msa0971090:CDS 55.0%
ACCCTGTGACAGAGATGGTG+TGG + chr6_4:2753948-2753967 None:intergenic 55.0%
TCGGTACCCTGTGACAGAGA+TGG + chr6_4:2753953-2753972 None:intergenic 55.0%
! ACTGAGAAGGAGAGCGCGGA+AGG - chr6_4:2752129-2752148 Msa0971090:CDS 60.0%
AAGAGTCATCCGTGGTGGCC+AGG - chr6_4:2752297-2752316 Msa0971090:CDS 60.0%
TAAACCCGACCTGGCCACCA+CGG + chr6_4:2752309-2752328 None:intergenic 60.0%
!! GTCGTCCGTTTGTTGTGGCG+GGG - chr6_4:2752550-2752569 Msa0971090:CDS 60.0%
!! TCGTCCGTTTGTTGTGGCGG+GGG - chr6_4:2752551-2752570 Msa0971090:CDS 60.0%
GTCTCCCCCGCCACAACAAA+CGG + chr6_4:2752558-2752577 None:intergenic 60.0%
GAGAACATCAGCGGTGGGAG+CGG - chr6_4:2753242-2753261 Msa0971090:CDS 60.0%
CCAAGACCAGCGGCAAGAAG+GGG - chr6_4:2753831-2753850 Msa0971090:CDS 60.0%
GTCATCCGTGGTGGCCAGGT+CGG - chr6_4:2752301-2752320 Msa0971090:CDS 65.0%
TCATCCGTGGTGGCCAGGTC+GGG - chr6_4:2752302-2752321 Msa0971090:CDS 65.0%
! CCCCTTCTTGCCGCTGGTCT+TGG + chr6_4:2753834-2753853 None:intergenic 65.0%
ATCGGTCCCCTTCTTGCCGC+TGG + chr6_4:2753840-2753859 None:intergenic 65.0%
CATCAGCGGTGGGAGCGGAG+AGG - chr6_4:2753247-2753266 Msa0971090:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 2751463 2754132 2751463 ID=Msa0971090;Name=Msa0971090
chr6_4 mRNA 2751463 2754132 2751463 ID=Msa0971090-mRNA-1;Parent=Msa0971090;Name=Msa0971090-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|-1|0|1|-1|1|1|0|889
chr6_4 exon 2751463 2754132 2751463 ID=Msa0971090-mRNA-1:exon:1355;Parent=Msa0971090-mRNA-1
chr6_4 CDS 2751463 2754132 2751463 ID=Msa0971090-mRNA-1:cds;Parent=Msa0971090-mRNA-1
Gene Sequence

>Msa0971090

ATGGGTGTGGTTGATACTGAATCGATGGAACCATTTGGGGTTGAAACTAGTTTAGCTGAAAATGTTATGGTTGAAGGTTCAGAGCAGGAGAAGAATGAGCTTAAGGAAGTTGTTAAGAGTAGTGTTTTCAAGACTGAGGTTTCGGTTTTGAAGGAGAATGATTCTCAGGTTGTGAATGATTCCCCGGTGAATAATGGGGTGTCTTCTGAGATGAATAATGACGGTGCTGTTGAAGTTGTTAAGAGTAGCGTTTTCGAGACTGAGGTTTCGATTTTGAAGGCGAATGACTCTCAGGTTGTGACTGATTCTGAAGTGAATAATGAGGTGTCTTCTTTGTTGAAAACGGGAGAAAACGATGGAAGCGTTGTCGTTTGTGATAAGAAAGTCAAAGAAGGTGATGAAAAAATTCAGACTGTGGAGATTCCAATTGTGGAGATAAGCGAGAATGTTGATATTGAAGTGAACGGGAAGGAGAATGAGGAGGGGAAAAAAGATGAAAAAATTGCGACTGTTGAGGTTCCAATAGTGGAAACAAGTGAGAACATTGATGTTGAGATGAATGAGAAGGATAGTGAGGAGGGAGAAAAGGGTGAAAATTGTGATGGGAAGATAGAGTCTATTGAGGTACCAATAGTGGAGGCAAGTGAGAGCATCGATGTTGAAATGACTGAGAAGGAGAGCGCGGAAGGAAACAAAGATGACAATTGTGATGGGAAGATCGAGACTATTGAGGATTCAATAGTGGAGGCTAGTGAGAGCATGGATGTTGAAGTTGACGATTTGATTGATGAAAGGTGTGACTTTTCTGTTGGCGATTTTGTTTGGGGAAAGATTAAGAGTCATCCGTGGTGGCCAGGTCGGGTTTATGATCCGTCTGATGCGTCGGAACTTGCTTTAAAGCTGAAACAAAAGAATAGACTCTTGGTAGCTTACTTTGATGGAACATTTGCTTGGTGCCATCCGTCACAATTGAAGCCTTTTAAGGATAATTTTGATGATATGGTGGGACAAGGTAGTTCCAAAGCTTTCACCTATGCTGTTCAAGAAGCTGTAAATGAGGTTGGAAGGGTGCTGGTTACAAAGATGAGTCGTCCGTTTGTTGTGGCGGGGGAGACTAAGTCTGAATTCGCTCCAATGTTGGCGAAAAATTCAGGAATCAAGGAAGGTGTTTTTGTGCCTGATAGTGGCACAGAGAGCATTTCGGCGGTTACACTTGAACCGGCTGAGTTACTTTCTCAAGTGAAACAAATTGCTGAAAGTATTGATATTGCTAGTGTTCTGGAGCTGGAAATATTGAAGGCTCGGATTTCAGCTTTTTATCTCTCAAAAGGAGGATATAAGTTACCTTGTTATGAGGATCCCAAACGGGTTCTCGGACTTGAAGATAAAGATGATGTCAACAATGCAGTTGAAGCACCATCCCAAGGGCCGTTTGAAGAGGACTACTCTACACTGCCATTGACCCCAAAATCAGGTTCAGGAAGTAGACCGAACCGTAGAAGAAAGCAGAAAAGCATCGCTGACATTATGGGGGAGGAAAAAGATGTTGATGCAAAAGATAAGGAATGGGATGCAAGTGATGATGAAGTTCTGGTTGCAATTAAGTCTAAGGGTAGAAAAAAGAAAAAAGACAACGACGATGCAGGGACATCTGAACCAGTTCAGAAGAGAAAAGAGTTGCTTGCAGGTACTGATACAGAGACTGTAAGAGGTGGAAAAGAAAGCTGTGACAGGGGCAAATCGCAGCATTCAGGTGAGGAAAAAGAAGCTTCTGGTAATGAGAACATCAGCGGTGGGAGCGGAGAGGAAAACGATGAAGGGAAGCCGAAAGAACCAAATGAAAAGGGTTTTTTGTCAAGAGAAAGGAAGAAAAGCAAGTATTTGTCACCTCCTTTCACTACTTCAATCAGAGACTTTGTGAAGGTAAGAGGTGCTGGCCTGCTTTCTCCTCGAGTTTCAAAGTATAACAGTGAGGCATTTCAAGAGTTGGAACTTTCTGTTAGCTTGAATCACCAAACACCAGATGATGAGAAAGAAACCCTTGATCCAGAGAAAGTCAAGGTTCCTTCAGCCGAAATTCTGTCAAAAATTCGCGATGCAGCGCTTAGTCCACAAATGTCAAGGAGGGGCACTTCTTCTGATAGACTTGTAGACTTTGTTTCTGTCATGAGAAGTTCATTGTATCGCGAAGGATCATTACACAAAGAATACAATGAAGCTGAACCTGGAACTGGAAGGAAGAGAAAGAAGCCAGAATCTGAGCTTGATCAATCTGATAACATATCACCTAGCGAAGATTCTGGACCAGCCAAGAAAAGAAAGGAGAGAACTACAAGCTTGTCAAAAATGAAGAAGAGAGCTCGTGAAACCAAGACCAGCGGCAAGAAGGGGACCGATGAAAAATCTGGAGGACAACACACTGAAAGATTAAAGAAGTCCAAACCTTCACAAGACAAGAAGAAAGACAAGCTCCTAACTCCAGCCACACCATCTCTGTCACAGGGTACCGAGACATCTAAGTTGATCGTCATACAGCAGAAACTTCAAGGTCTGGTCTCAATGCTCGAATCATCCGACGACAAATCGCCTGATTTCAAGACAAAGGTAGAGAGCGAGGTGAAAGGTCTTTTGGAGGATGTGAACAACATGGTTGAATCTACTTCGTCGTGA

Protein sequence

>Msa0971090

MGVVDTESMEPFGVETSLAENVMVEGSEQEKNELKEVVKSSVFKTEVSVLKENDSQVVNDSPVNNGVSSEMNNDGAVEVVKSSVFETEVSILKANDSQVVTDSEVNNEVSSLLKTGENDGSVVVCDKKVKEGDEKIQTVEIPIVEISENVDIEVNGKENEEGKKDEKIATVEVPIVETSENIDVEMNEKDSEEGEKGENCDGKIESIEVPIVEASESIDVEMTEKESAEGNKDDNCDGKIETIEDSIVEASESMDVEVDDLIDERCDFSVGDFVWGKIKSHPWWPGRVYDPSDASELALKLKQKNRLLVAYFDGTFAWCHPSQLKPFKDNFDDMVGQGSSKAFTYAVQEAVNEVGRVLVTKMSRPFVVAGETKSEFAPMLAKNSGIKEGVFVPDSGTESISAVTLEPAELLSQVKQIAESIDIASVLELEILKARISAFYLSKGGYKLPCYEDPKRVLGLEDKDDVNNAVEAPSQGPFEEDYSTLPLTPKSGSGSRPNRRRKQKSIADIMGEEKDVDAKDKEWDASDDEVLVAIKSKGRKKKKDNDDAGTSEPVQKRKELLAGTDTETVRGGKESCDRGKSQHSGEEKEASGNENISGGSGEENDEGKPKEPNEKGFLSRERKKSKYLSPPFTTSIRDFVKVRGAGLLSPRVSKYNSEAFQELELSVSLNHQTPDDEKETLDPEKVKVPSAEILSKIRDAALSPQMSRRGTSSDRLVDFVSVMRSSLYREGSLHKEYNEAEPGTGRKRKKPESELDQSDNISPSEDSGPAKKRKERTTSLSKMKKRARETKTSGKKGTDEKSGGQHTERLKKSKPSQDKKKDKLLTPATPSLSQGTETSKLIVIQQKLQGLVSMLESSDDKSPDFKTKVESEVKGLLEDVNNMVESTSS*