Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648010 | XP_003607403.1 | 99.487 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 2.41e-140 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648010 | sp|P61210|ARF1_LOCMI | 63.483 | 178 | 65 | 0 | 1 | 178 | 1 | 178 | 9.58e-84 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648010 | G7JRR7 | 99.487 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 1.15e-140 | 399 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0648010 | Msa0690770 | 0.849366 | 3.385543e-60 | -8.615850e-47 |
| Msa0648010 | Msa1085470 | 0.807796 | 4.242111e-50 | -8.615850e-47 |
| Msa0648010 | Msa1125500 | 0.804075 | 2.570380e-49 | -8.615850e-47 |
| Msa0648010 | Msa1125580 | 0.805219 | 1.483858e-49 | -8.615850e-47 |
| Msa0648010 | Msa1369190 | 0.808736 | 2.674477e-50 | -8.615850e-47 |
| Msa0648010 | Msa1462860 | 0.837034 | 6.595296e-57 | -8.615850e-47 |
| Msa0123010 | Msa0648010 | 0.818369 | 2.032322e-52 | -8.615850e-47 |
| Msa0389510 | Msa0648010 | 0.854587 | 1.114643e-61 | -8.615850e-47 |
| Msa0544540 | Msa0648010 | 0.828529 | 8.547906e-55 | -8.615850e-47 |
| Msa0580230 | Msa0648010 | 0.847573 | 1.061733e-59 | -8.615850e-47 |
| Msa0580280 | Msa0648010 | 0.822540 | 2.242980e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648010 | MtrunA17_Chr4g0039591 | 99.487 | 195 | 1 | 0 | 1 | 195 | 1 | 195 | 2.22e-144 | 399 |
| Msa0648010 | MtrunA17_Chr5g0395631 | 88.718 | 195 | 17 | 1 | 1 | 195 | 1 | 190 | 2.24e-128 | 358 |
| Msa0648010 | MtrunA17_Chr5g0395641 | 77.660 | 188 | 40 | 1 | 1 | 186 | 1 | 188 | 1.07e-106 | 304 |
| Msa0648010 | MtrunA17_Chr7g0270301 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 1.23e-81 | 240 |
| Msa0648010 | MtrunA17_Chr1g0194261 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 1.58e-81 | 239 |
| Msa0648010 | MtrunA17_Chr6g0450081 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.27e-81 | 239 |
| Msa0648010 | MtrunA17_Chr5g0413451 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.89e-81 | 239 |
| Msa0648010 | MtrunA17_Chr5g0413441 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.89e-81 | 239 |
| Msa0648010 | MtrunA17_Chr5g0401761 | 58.757 | 177 | 73 | 0 | 1 | 177 | 1 | 177 | 5.21e-78 | 231 |
| Msa0648010 | MtrunA17_Chr4g0072861 | 56.742 | 178 | 77 | 0 | 1 | 178 | 1 | 178 | 2.77e-71 | 214 |
| Msa0648010 | MtrunA17_Chr1g0188111 | 49.425 | 174 | 88 | 0 | 1 | 174 | 1 | 174 | 4.68e-59 | 183 |
| Msa0648010 | MtrunA17_Chr8g0373271 | 44.304 | 158 | 85 | 3 | 18 | 173 | 17 | 173 | 9.53e-44 | 144 |
| Msa0648010 | MtrunA17_Chr5g0395651 | 78.082 | 73 | 16 | 0 | 1 | 73 | 1 | 73 | 9.14e-36 | 120 |
| Msa0648010 | MtrunA17_Chr2g0287721 | 31.579 | 190 | 119 | 2 | 1 | 181 | 1 | 188 | 1.51e-29 | 108 |
| Msa0648010 | MtrunA17_Chr5g0395671 | 84.906 | 53 | 8 | 0 | 131 | 183 | 43 | 95 | 4.60e-28 | 101 |
| Msa0648010 | MtrunA17_Chr5g0434561 | 34.965 | 143 | 92 | 1 | 11 | 152 | 13 | 155 | 2.53e-27 | 102 |
| Msa0648010 | MtrunA17_Chr5g0401071 | 31.788 | 151 | 102 | 1 | 3 | 152 | 5 | 155 | 3.59e-26 | 99.0 |
| Msa0648010 | MtrunA17_Chr2g0294701 | 29.843 | 191 | 114 | 3 | 8 | 178 | 3 | 193 | 1.34e-24 | 95.1 |
| Msa0648010 | MtrunA17_Chr4g0068171 | 30.366 | 191 | 113 | 3 | 8 | 178 | 3 | 193 | 7.70e-24 | 93.2 |
| Msa0648010 | MtrunA17_Chr7g0271761 | 29.319 | 191 | 115 | 3 | 8 | 178 | 3 | 193 | 5.16e-23 | 91.3 |
| Msa0648010 | MtrunA17_Chr4g0012371 | 26.752 | 157 | 114 | 1 | 18 | 173 | 1 | 157 | 1.46e-20 | 84.0 |
| Msa0648010 | MtrunA17_Chr5g0395661 | 69.767 | 43 | 13 | 0 | 88 | 130 | 1 | 43 | 3.04e-15 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0648010 | AT3G03120.1 | 91.534 | 189 | 16 | 0 | 1 | 189 | 1 | 189 | 3.24e-130 | 363 |
| Msa0648010 | AT5G17060.2 | 90.476 | 189 | 18 | 0 | 1 | 189 | 1 | 189 | 3.86e-130 | 363 |
| Msa0648010 | AT5G17060.1 | 90.476 | 189 | 18 | 0 | 1 | 189 | 1 | 189 | 3.86e-130 | 363 |
| Msa0648010 | AT3G03120.2 | 93.846 | 130 | 8 | 0 | 1 | 130 | 1 | 130 | 1.72e-87 | 253 |
| Msa0648010 | AT1G10630.1 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 1.66e-81 | 240 |
| Msa0648010 | AT1G10630.2 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 1.66e-81 | 240 |
| Msa0648010 | AT1G23490.1 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0648010 | AT1G70490.2 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0648010 | AT1G70490.7 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0648010 | AT1G70490.4 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0648010 | AT1G70490.3 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0648010 | AT1G70490.1 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0648010 | AT1G70490.6 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0648010 | AT1G70490.5 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 2.44e-81 | 239 |
| Msa0648010 | AT3G62290.3 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 4.55e-81 | 239 |
| Msa0648010 | AT3G62290.1 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 4.55e-81 | 239 |
| Msa0648010 | AT3G62290.2 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 4.55e-81 | 239 |
| Msa0648010 | AT2G47170.2 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 5.25e-81 | 239 |
| Msa0648010 | AT2G47170.1 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 5.25e-81 | 239 |
| Msa0648010 | AT2G47170.3 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 5.25e-81 | 239 |
| Msa0648010 | AT5G14670.2 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 6.60e-81 | 238 |
| Msa0648010 | AT5G14670.3 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 6.60e-81 | 238 |
| Msa0648010 | AT5G14670.1 | 61.017 | 177 | 69 | 0 | 1 | 177 | 1 | 177 | 8.81e-81 | 238 |
| Msa0648010 | AT2G24765.1 | 57.865 | 178 | 75 | 0 | 1 | 178 | 1 | 178 | 2.45e-73 | 219 |
| Msa0648010 | AT2G15310.1 | 53.158 | 190 | 87 | 1 | 1 | 188 | 1 | 190 | 2.96e-71 | 215 |
| Msa0648010 | AT3G22950.1 | 50.575 | 174 | 86 | 0 | 1 | 174 | 1 | 174 | 1.94e-61 | 189 |
| Msa0648010 | AT3G22950.2 | 50.575 | 174 | 86 | 0 | 1 | 174 | 1 | 174 | 1.94e-61 | 189 |
| Msa0648010 | AT2G24765.2 | 58.594 | 128 | 53 | 0 | 1 | 128 | 1 | 128 | 2.90e-51 | 162 |
| Msa0648010 | AT1G02430.1 | 43.684 | 190 | 97 | 4 | 1 | 180 | 1 | 190 | 1.31e-47 | 154 |
| Msa0648010 | AT1G02440.1 | 40.000 | 190 | 104 | 4 | 1 | 180 | 1 | 190 | 6.47e-45 | 147 |
| Msa0648010 | AT2G18390.1 | 45.570 | 158 | 83 | 3 | 18 | 173 | 17 | 173 | 2.70e-44 | 145 |
| Msa0648010 | AT1G02430.2 | 41.875 | 160 | 87 | 3 | 1 | 154 | 1 | 160 | 1.30e-35 | 123 |
| Msa0648010 | AT5G52210.1 | 33.702 | 181 | 113 | 2 | 8 | 181 | 8 | 188 | 6.41e-31 | 112 |
| Msa0648010 | AT5G52210.2 | 33.702 | 181 | 113 | 2 | 8 | 181 | 8 | 188 | 6.41e-31 | 112 |
| Msa0648010 | AT3G49870.1 | 30.814 | 172 | 118 | 1 | 3 | 173 | 5 | 176 | 2.20e-26 | 100 |
| Msa0648010 | AT5G37680.1 | 32.867 | 143 | 95 | 1 | 11 | 152 | 13 | 155 | 2.56e-26 | 99.8 |
| Msa0648010 | AT3G49860.1 | 32.117 | 137 | 92 | 1 | 17 | 152 | 11 | 147 | 2.82e-25 | 97.1 |
| Msa0648010 | AT5G67560.1 | 30.488 | 164 | 113 | 1 | 11 | 173 | 13 | 176 | 1.17e-24 | 95.5 |
| Msa0648010 | AT3G49870.2 | 30.573 | 157 | 108 | 1 | 18 | 173 | 1 | 157 | 9.11e-24 | 92.8 |
| Msa0648010 | AT3G62560.1 | 30.000 | 190 | 113 | 4 | 8 | 177 | 3 | 192 | 1.22e-22 | 90.5 |
| Msa0648010 | AT1G56330.1 | 28.421 | 190 | 116 | 2 | 8 | 177 | 3 | 192 | 1.36e-22 | 90.5 |
| Msa0648010 | AT4G02080.1 | 28.272 | 191 | 117 | 3 | 8 | 178 | 3 | 193 | 3.08e-22 | 89.4 |
| Msa0648010 | AT1G09180.1 | 28.796 | 191 | 116 | 3 | 8 | 178 | 3 | 193 | 7.82e-22 | 88.6 |
| Msa0648010 | AT5G37680.2 | 30.469 | 128 | 89 | 0 | 46 | 173 | 2 | 129 | 1.03e-21 | 86.7 |
| Msa0648010 | AT1G02440.2 | 31.613 | 155 | 70 | 4 | 1 | 154 | 1 | 120 | 1.35e-20 | 83.2 |
Find 94 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACAGTTACTCTGCCTTTC+AGG | 0.123010 | 4_3:+54393794 | Msa0648010:three_prime_UTR |
| GAAAGCAAAGCAGGAATTTC+AGG | 0.253795 | 4_3:+54391884 | Msa0648010:CDS |
| GATTACCAATCACGACATTT+TGG | 0.262840 | 4_3:-54393736 | None:intergenic |
| TGATTTGATTTGATTTGATT+TGG | 0.281619 | 4_3:-54390242 | None:intergenic |
| AATATAACTGTCACTTCTAT+TGG | 0.301421 | 4_3:+54394154 | Msa0648010:three_prime_UTR |
| GATTGGTAATCAAATTCTTT+TGG | 0.330564 | 4_3:+54393748 | Msa0648010:three_prime_UTR |
| TGATGGCCTTTATGAGGGTT+TGG | 0.331261 | 4_3:+54393494 | Msa0648010:CDS |
| TTGATCTAAAGAATAGAAAA+TGG | 0.336411 | 4_3:+54393442 | Msa0648010:CDS |
| ACAAGGCACCTGTGCACTTA+AGG | 0.339217 | 4_3:+54393470 | Msa0648010:CDS |
| AAACTCTTCGATTCCTTCTT+CGG | 0.364291 | 4_3:+54390367 | Msa0648010:CDS |
| TTATCTACTGTTCCTACAAT+TGG | 0.369753 | 4_3:+54391085 | Msa0648010:CDS |
| GTTATATTATTGTGGTCAAA+AGG | 0.373193 | 4_3:-54394139 | None:intergenic |
| ATGACACTGTTGAGCATAAA+CGG | 0.386547 | 4_3:-54392013 | None:intergenic |
| ATTAACAAAGTGGTGAGAAT+TGG | 0.390787 | 4_3:+54390206 | None:intergenic |
| GTCTGGACCGTGAGAGAATT+GGG | 0.392903 | 4_3:+54391862 | Msa0648010:CDS |
| TTATTATGATTCAGTTAGAT+TGG | 0.404356 | 4_3:+54394099 | Msa0648010:three_prime_UTR |
| TAAGGGTGATGGCCTTTATG+AGG | 0.405630 | 4_3:+54393488 | Msa0648010:CDS |
| AGGGAAGTGTGTGACGGATT+AGG | 0.411446 | 4_3:+54393414 | Msa0648010:CDS |
| GTGGTTTAGGTTGTCATGCT+TGG | 0.425719 | 4_3:+54391007 | Msa0648010:intron |
| AAATAAAACCCACCAATTGT+AGG | 0.427108 | 4_3:-54391097 | None:intergenic |
| AGTCTGGACCGTGAGAGAAT+TGG | 0.428076 | 4_3:+54391861 | Msa0648010:CDS |
| GATATATGTTGTTGATAGTC+TGG | 0.429765 | 4_3:+54391845 | Msa0648010:intron |
| AGAATCAGAAGAAACGCAAC+AGG | 0.438072 | 4_3:+54390264 | Msa0648010:five_prime_UTR |
| CAAGGCACCTGTGCACTTAA+GGG | 0.443318 | 4_3:+54393471 | Msa0648010:CDS |
| ACCAGTCCAAACCCTCATAA+AGG | 0.443770 | 4_3:-54393500 | None:intergenic |
| GCTGCTGGATACTCTTCATT+AGG | 0.445230 | 4_3:+54393549 | Msa0648010:CDS |
| AAAGTGTCCTCAATTTCTCT+TGG | 0.449055 | 4_3:-54391617 | None:intergenic |
| ACATACCAGGTCTTGTTTGT+TGG | 0.462219 | 4_3:-54392047 | None:intergenic |
| GGATAGAAGGTCTTGGATAC+CGG | 0.464749 | 4_3:+54393922 | Msa0648010:three_prime_UTR |
| TATGCTCAACAGTGTCATCT+TGG | 0.465762 | 4_3:+54392018 | Msa0648010:CDS |
| TATTATGATTCAGTTAGATT+GGG | 0.476793 | 4_3:+54394100 | Msa0648010:three_prime_UTR |
| ATGCTTGGTCTTGATGCTGC+TGG | 0.478012 | 4_3:+54391022 | Msa0648010:CDS |
| AACATTCACAAAGTGTAAGA+TGG | 0.480467 | 4_3:-54393978 | None:intergenic |
| TTGCTTTCCCAATTCTCTCA+CGG | 0.480979 | 4_3:-54391869 | None:intergenic |
| TACAGTTACTCTGCCTTTCA+GGG | 0.485049 | 4_3:+54393795 | Msa0648010:three_prime_UTR |
| CACTTCCAAAATGTCGTGAT+TGG | 0.486659 | 4_3:+54393731 | Msa0648010:three_prime_UTR |
| TTTGCTTTGATCTGATCGCA+TGG | 0.488081 | 4_3:+54390330 | Msa0648010:exon |
| CACGTTAAGTGCACGGGTAC+CGG | 0.490269 | 4_3:+54393901 | Msa0648010:three_prime_UTR |
| AAGAGAAATTGAGGACACTT+TGG | 0.498427 | 4_3:+54391619 | Msa0648010:CDS |
| TATGATTCAGTTAGATTGGG+TGG | 0.505038 | 4_3:+54394103 | Msa0648010:three_prime_UTR |
| AAGAAACGCAACAGGGAAGA+AGG | 0.506824 | 4_3:+54390272 | Msa0648010:five_prime_UTR |
| CATCTCGGTATTGCCGAAGA+AGG | 0.507052 | 4_3:-54390380 | None:intergenic |
| TTCACGGTTTGGGATGTTGG+AGG | 0.507103 | 4_3:+54391594 | Msa0648010:CDS |
| GAGAATTGGGAAAGCAAAGC+AGG | 0.509211 | 4_3:+54391875 | Msa0648010:CDS |
| TGCGATCAGATCAAAGCAAA+GGG | 0.512024 | 4_3:-54390327 | None:intergenic |
| GCCTTTATGAGGGTTTGGAC+TGG | 0.513026 | 4_3:+54393499 | Msa0648010:CDS |
| GTGCACGGGTACCGGATAGA+AGG | 0.517598 | 4_3:+54393909 | Msa0648010:three_prime_UTR |
| TTGCTTTGATCTGATCGCAT+GGG | 0.518898 | 4_3:+54390331 | Msa0648010:exon |
| CTGAAGGAGATGAAGGCTGC+TGG | 0.519424 | 4_3:+54393534 | Msa0648010:CDS |
| CTCAACACTGAAGGAGATGA+AGG | 0.520559 | 4_3:+54393527 | Msa0648010:CDS |
| TTATATTATTGTGGTCAAAA+GGG | 0.520902 | 4_3:-54394138 | None:intergenic |
| GTGTAAGATGGAGAAAATCA+AGG | 0.522947 | 4_3:-54393966 | None:intergenic |
| AGAAATTGAGGACACTTTGG+AGG | 0.527256 | 4_3:+54391622 | Msa0648010:CDS |
| TGACACTGTTGAGCATAAAC+GGG | 0.527829 | 4_3:-54392012 | None:intergenic |
| ACCTGTGCACTTAAGGGTGA+TGG | 0.530294 | 4_3:+54393477 | Msa0648010:CDS |
| ATTAATTAACATTAACAAAG+TGG | 0.531971 | 4_3:+54390196 | None:intergenic |
| GGGAGAATGAACAACTGATC+CGG | 0.532710 | 4_3:-54393945 | None:intergenic |
| CAGATCAAAGCAAAGGGAAG+GGG | 0.537826 | 4_3:-54390321 | None:intergenic |
| TTGGAGGCCAAGAGAAATTG+AGG | 0.540924 | 4_3:+54391610 | Msa0648010:CDS |
| AAGGGTGATGGCCTTTATGA+GGG | 0.543901 | 4_3:+54393489 | Msa0648010:CDS |
| CGGTACCCGTGCACTTAACG+TGG | 0.544589 | 4_3:-54393900 | None:intergenic |
| CTTCATCTCCTTCAGTGTTG+AGG | 0.544907 | 4_3:-54393526 | None:intergenic |
| GCCATCACCCTTAAGTGCAC+AGG | 0.550998 | 4_3:-54393478 | None:intergenic |
| GAGAGGAGCGATGACGGCAA+GGG | 0.553248 | 4_3:+54393395 | Msa0648010:intron |
| CTTCGGCAATACCGAGATGC+GGG | 0.555246 | 4_3:+54390384 | Msa0648010:CDS |
| GGGTACCGGATAGAAGGTCT+TGG | 0.556999 | 4_3:+54393915 | Msa0648010:three_prime_UTR |
| AGAGAGGAGCGATGACGGCA+AGG | 0.563849 | 4_3:+54393394 | Msa0648010:intron |
| AAGTGACAGTTATATTATTG+TGG | 0.567461 | 4_3:-54394147 | None:intergenic |
| AAAATTGATTACCCGCATCT+CGG | 0.568887 | 4_3:-54390395 | None:intergenic |
| GGTATCCAAGACCTTCTATC+CGG | 0.569552 | 4_3:-54393920 | None:intergenic |
| TGTAAGATGGAGAAAATCAA+GGG | 0.569972 | 4_3:-54393965 | None:intergenic |
| TTTCTAGAGAGGAGCGATGA+CGG | 0.572515 | 4_3:+54393389 | Msa0648010:intron |
| CTGGTTGTCCTCAACACTGA+AGG | 0.574863 | 4_3:+54393518 | Msa0648010:CDS |
| ATCAGATCAAAGCAAAGGGA+AGG | 0.574929 | 4_3:-54390323 | None:intergenic |
| AATAGAAAATGGCACATACA+AGG | 0.575931 | 4_3:+54393453 | Msa0648010:CDS |
| ATGCGATCAGATCAAAGCAA+AGG | 0.579992 | 4_3:-54390328 | None:intergenic |
| TTGTGAATGTTATTTCTGTG+TGG | 0.583983 | 4_3:+54393990 | Msa0648010:three_prime_UTR |
| ACTGAATCATAATAACATGT+TGG | 0.584424 | 4_3:-54394091 | None:intergenic |
| ACATCTTTAAATACCCTGAA+AGG | 0.597782 | 4_3:-54393808 | None:intergenic |
| GGATACTCTTCATTAGGACT+AGG | 0.607922 | 4_3:+54393555 | Msa0648010:CDS |
| AGAAGGTCTTGGATACCGGC+CGG | 0.609106 | 4_3:+54393926 | Msa0648010:three_prime_UTR |
| GCAACAGGGAAGAAGGAACA+AGG | 0.611231 | 4_3:+54390279 | Msa0648010:five_prime_UTR |
| ATACCCCACGTTAAGTGCAC+GGG | 0.614613 | 4_3:+54393895 | Msa0648010:three_prime_UTR |
| TGCACATTCACCAAATCGCA+AGG | 0.614824 | 4_3:-54393699 | None:intergenic |
| TCAGATCAAAGCAAAGGGAA+GGG | 0.617653 | 4_3:-54390322 | None:intergenic |
| ATATTGTACAAGCTTCACAT+TGG | 0.619894 | 4_3:+54391055 | Msa0648010:CDS |
| GATACCCCACGTTAAGTGCA+CGG | 0.622277 | 4_3:+54393894 | Msa0648010:three_prime_UTR |
| GAATGAACAACTGATCCGGC+CGG | 0.629702 | 4_3:-54393941 | None:intergenic |
| ACTTGCCAACAAACAAGACC+TGG | 0.637361 | 4_3:+54392042 | Msa0648010:CDS |
| ACGGCAAGGGAAGTGTGTGA+CGG | 0.660211 | 4_3:+54393408 | Msa0648010:CDS |
| TCTTCGGCAATACCGAGATG+CGG | 0.663090 | 4_3:+54390383 | Msa0648010:CDS |
| GGTACCCGTGCACTTAACGT+GGG | 0.671899 | 4_3:-54393899 | None:intergenic |
| GTACCCGTGCACTTAACGTG+GGG | 0.697074 | 4_3:-54393898 | None:intergenic |
| GAATCAGAAGAAACGCAACA+GGG | 0.708414 | 4_3:+54390265 | Msa0648010:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTACATAATCAATTTT+TGG | - | chr4_3:54390530-54390549 | None:intergenic | 10.0% |
| !!! | TGATTATGTAAAATTGATTT+CGG | + | chr4_3:54390535-54390554 | Msa0648010:intron | 15.0% |
| !! | AAATAAAAATAAATCTACTC+TGG | + | chr4_3:54390700-54390719 | Msa0648010:intron | 15.0% |
| !!! | AGAATTAATTTTGACAAATT+TGG | - | chr4_3:54390731-54390750 | None:intergenic | 15.0% |
| !!! | TTCTTTTTTTCTTTCAAATT+TGG | + | chr4_3:54390983-54391002 | Msa0648010:intron | 15.0% |
| !! | ATTTAAATAGCTGTAATATA+TGG | + | chr4_3:54392258-54392277 | Msa0648010:intron | 15.0% |
| !! | AATATTCATTATTTACTTAC+TGG | + | chr4_3:54392524-54392543 | Msa0648010:intron | 15.0% |
| !! | GAATTTCTAATTATATTATG+AGG | - | chr4_3:54392971-54392990 | None:intergenic | 15.0% |
| !!! | ACTATTATTTTTATGAATCA+AGG | - | chr4_3:54394028-54394047 | None:intergenic | 15.0% |
| !!! | TGATTTGATTTGATTTGATT+TGG | - | chr4_3:54390245-54390264 | None:intergenic | 20.0% |
| !!! | TCTATGAAACTTTTTTTTGA+TGG | + | chr4_3:54391339-54391358 | Msa0648010:intron | 20.0% |
| !! | ATTTGCAATACAATTACAAA+GGG | - | chr4_3:54391403-54391422 | None:intergenic | 20.0% |
| !! | TATTTGCAATACAATTACAA+AGG | - | chr4_3:54391404-54391423 | None:intergenic | 20.0% |
| !! | AATTGTATTGCAAATATATG+TGG | + | chr4_3:54391408-54391427 | Msa0648010:intron | 20.0% |
| !!! | GTATAAGAATGTTATTTTCA+CGG | + | chr4_3:54391578-54391597 | Msa0648010:CDS | 20.0% |
| !! | ATAAGAATAATTGTAGCAAA+AGG | - | chr4_3:54391753-54391772 | None:intergenic | 20.0% |
| !! | CAATTATTCTTATATCCTAT+AGG | + | chr4_3:54391760-54391779 | Msa0648010:intron | 20.0% |
| !!! | AGAACTTTTTTAAGCAAAAA+CGG | + | chr4_3:54393011-54393030 | Msa0648010:intron | 20.0% |
| !! | TTGATGAAATTTGACATATT+GGG | - | chr4_3:54393223-54393242 | None:intergenic | 20.0% |
| !! | ATTGATGAAATTTGACATAT+TGG | - | chr4_3:54393224-54393243 | None:intergenic | 20.0% |
| !! | AATATGTCAAATTTCATCAA+TGG | + | chr4_3:54393223-54393242 | Msa0648010:intron | 20.0% |
| !! | TTGATCTAAAGAATAGAAAA+TGG | + | chr4_3:54393442-54393461 | Msa0648010:CDS | 20.0% |
| !!! | GTATATTTTCATTCTTTTGT+AGG | + | chr4_3:54393668-54393687 | Msa0648010:intron | 20.0% |
| !! | TTATTATGATTCAGTTAGAT+TGG | + | chr4_3:54394099-54394118 | Msa0648010:three_prime_UTR | 20.0% |
| !! | TATTATGATTCAGTTAGATT+GGG | + | chr4_3:54394100-54394119 | Msa0648010:three_prime_UTR | 20.0% |
| !! | TTATATTATTGTGGTCAAAA+GGG | - | chr4_3:54394141-54394160 | None:intergenic | 20.0% |
| !!! | TAGAGTTTTAATGCATGTTT+GGG | + | chr4_3:54390501-54390520 | Msa0648010:intron | 25.0% |
| ! | ATTATTATGTAAAAGTGAGC+TGG | + | chr4_3:54390599-54390618 | Msa0648010:intron | 25.0% |
| ! | TCAAACTTGAAGCTAAAAAT+TGG | - | chr4_3:54390668-54390687 | None:intergenic | 25.0% |
| ! | AGAAAGCTACATTAACAATT+TGG | - | chr4_3:54390804-54390823 | None:intergenic | 25.0% |
| !!! | TTTTTCTTTCAAATTTGGTG+TGG | + | chr4_3:54390988-54391007 | Msa0648010:intron | 25.0% |
| ! | AATGCTAATAAAGTTGTGTT+TGG | + | chr4_3:54391195-54391214 | Msa0648010:intron | 25.0% |
| ! | TTTGCAATACAATTACAAAG+GGG | - | chr4_3:54391402-54391421 | None:intergenic | 25.0% |
| ! | AGCAGAACGAAAATTATAAT+TGG | + | chr4_3:54391479-54391498 | Msa0648010:intron | 25.0% |
| !!! | GTGTTAATTTGTAAGCTTTT+GGG | - | chr4_3:54391917-54391936 | None:intergenic | 25.0% |
| !!! | TGTGTTAATTTGTAAGCTTT+TGG | - | chr4_3:54391918-54391937 | None:intergenic | 25.0% |
| ! | TAGCTGTAATATATGGAATA+TGG | + | chr4_3:54392265-54392284 | Msa0648010:intron | 25.0% |
| ! | ATATATGGAATATGGTTCAA+AGG | + | chr4_3:54392273-54392292 | Msa0648010:intron | 25.0% |
| !! | TGAATATTTTCAACTGTACT+TGG | - | chr4_3:54392512-54392531 | None:intergenic | 25.0% |
| ! | ACAACATATACAAATAGTGA+AGG | - | chr4_3:54392563-54392582 | None:intergenic | 25.0% |
| ! | TTTGTATATGTTGTCATTGT+TGG | + | chr4_3:54392569-54392588 | Msa0648010:intron | 25.0% |
| ! | TTTCTGTTGTCTAAGTTAAA+GGG | + | chr4_3:54392702-54392721 | Msa0648010:intron | 25.0% |
| ! | AAGGGAAGAAAACTTATTTA+AGG | + | chr4_3:54392720-54392739 | Msa0648010:intron | 25.0% |
| ! | AAGATTTGAAAAACATACAC+TGG | - | chr4_3:54392931-54392950 | None:intergenic | 25.0% |
| !!! | TGTATGTTTTTCAAATCTTG+AGG | + | chr4_3:54392932-54392951 | Msa0648010:intron | 25.0% |
| !!! | GTATGTTTTTCAAATCTTGA+GGG | + | chr4_3:54392933-54392952 | Msa0648010:intron | 25.0% |
| ! | GATTACATAAAGAATTCAAG+TGG | - | chr4_3:54393158-54393177 | None:intergenic | 25.0% |
| ! | GGATATACATAATCATACAA+AGG | - | chr4_3:54393277-54393296 | None:intergenic | 25.0% |
| ! | TTGCAGTTATAGCTAAATTA+AGG | - | chr4_3:54393354-54393373 | None:intergenic | 25.0% |
| ! | TTCAAACCTGAAAAATTAGA+AGG | - | chr4_3:54393589-54393608 | None:intergenic | 25.0% |
| !! | TCATTCTTTTGTAGGTATTT+TGG | + | chr4_3:54393676-54393695 | Msa0648010:intron | 25.0% |
| !!! | GATTGGTAATCAAATTCTTT+TGG | + | chr4_3:54393748-54393767 | Msa0648010:three_prime_UTR | 25.0% |
| ! | ACTGAATCATAATAACATGT+TGG | - | chr4_3:54394094-54394113 | None:intergenic | 25.0% |
| ! | GTTATATTATTGTGGTCAAA+AGG | - | chr4_3:54394142-54394161 | None:intergenic | 25.0% |
| ! | AAGTGACAGTTATATTATTG+TGG | - | chr4_3:54394150-54394169 | None:intergenic | 25.0% |
| !! | AATATAACTGTCACTTCTAT+TGG | + | chr4_3:54394154-54394173 | Msa0648010:three_prime_UTR | 25.0% |
| !! | GTAGAGTTTTAATGCATGTT+TGG | + | chr4_3:54390500-54390519 | Msa0648010:intron | 30.0% |
| !! | AGAGTTTTAATGCATGTTTG+GGG | + | chr4_3:54390502-54390521 | Msa0648010:intron | 30.0% |
| CAGCAATAATTCGATTATGT+CGG | + | chr4_3:54390831-54390850 | Msa0648010:intron | 30.0% | |
| AGCAATAATTCGATTATGTC+GGG | + | chr4_3:54390832-54390851 | Msa0648010:intron | 30.0% | |
| !! | TTTCAAATTTGGTGTGGTTT+AGG | + | chr4_3:54390994-54391013 | Msa0648010:intron | 30.0% |
| ATATTGTACAAGCTTCACAT+TGG | + | chr4_3:54391055-54391074 | Msa0648010:CDS | 30.0% | |
| TTATCTACTGTTCCTACAAT+TGG | + | chr4_3:54391085-54391104 | Msa0648010:CDS | 30.0% | |
| AAATAAAACCCACCAATTGT+AGG | - | chr4_3:54391100-54391119 | None:intergenic | 30.0% | |
| ATGCTTCCTAATTATCTACT+TGG | + | chr4_3:54391245-54391264 | Msa0648010:intron | 30.0% | |
| CAACAACCAAGTAGATAATT+AGG | - | chr4_3:54391254-54391273 | None:intergenic | 30.0% | |
| TGTTTAAATATGCTTGTGAG+CGG | + | chr4_3:54391284-54391303 | Msa0648010:intron | 30.0% | |
| TAGAACATCAGAATTCATGA+GGG | - | chr4_3:54391323-54391342 | None:intergenic | 30.0% | |
| ATAGAACATCAGAATTCATG+AGG | - | chr4_3:54391324-54391343 | None:intergenic | 30.0% | |
| TTGCAATACAATTACAAAGG+GGG | - | chr4_3:54391401-54391420 | None:intergenic | 30.0% | |
| TGTATTGCAAATATATGTGG+TGG | + | chr4_3:54391411-54391430 | Msa0648010:intron | 30.0% | |
| GTATTGCAAATATATGTGGT+GGG | + | chr4_3:54391412-54391431 | Msa0648010:intron | 30.0% | |
| TATAAGTTTGTATGCATTGC+AGG | + | chr4_3:54391534-54391553 | Msa0648010:intron | 30.0% | |
| !!! | AGAATGTTATTTTCACGGTT+TGG | + | chr4_3:54391583-54391602 | Msa0648010:CDS | 30.0% |
| !!! | GAATGTTATTTTCACGGTTT+GGG | + | chr4_3:54391584-54391603 | Msa0648010:CDS | 30.0% |
| !!! | CACTATTTTAACAACACAGA+TGG | + | chr4_3:54391645-54391664 | Msa0648010:CDS | 30.0% |
| ! | TTTTAACAACACAGATGGTT+TGG | + | chr4_3:54391650-54391669 | Msa0648010:CDS | 30.0% |
| ! | AAAACACAACTTGTGTCATT+TGG | + | chr4_3:54391713-54391732 | Msa0648010:intron | 30.0% |
| !! | GATATATGTTGTTGATAGTC+TGG | + | chr4_3:54391845-54391864 | Msa0648010:intron | 30.0% |
| TAAGTTATAGGTCATTCAGA+TGG | - | chr4_3:54392099-54392118 | None:intergenic | 30.0% | |
| TCTTTACACGTGTAAGTTAT+AGG | - | chr4_3:54392111-54392130 | None:intergenic | 30.0% | |
| CAAAGTCAAATCATGTGAAT+TGG | + | chr4_3:54392137-54392156 | Msa0648010:intron | 30.0% | |
| ACTGGTATGTGCATTAATTA+TGG | - | chr4_3:54392205-54392224 | None:intergenic | 30.0% | |
| TTTCTTTCCTCTTATAATGC+TGG | + | chr4_3:54392303-54392322 | Msa0648010:intron | 30.0% | |
| AAAAACAGAAAACTGCAAGA+CGG | - | chr4_3:54392408-54392427 | None:intergenic | 30.0% | |
| CTTTCTGTTGTCTAAGTTAA+AGG | + | chr4_3:54392701-54392720 | Msa0648010:intron | 30.0% | |
| ! | ATCTAACCAGTGTTGTTAAA+TGG | + | chr4_3:54392746-54392765 | Msa0648010:intron | 30.0% |
| ! | TCTAACCAGTGTTGTTAAAT+GGG | + | chr4_3:54392747-54392766 | Msa0648010:intron | 30.0% |
| TTTGAAAAACATACACTGGT+TGG | - | chr4_3:54392927-54392946 | None:intergenic | 30.0% | |
| ! | ACTAGTATCAAGACTTTTTG+TGG | - | chr4_3:54393066-54393085 | None:intergenic | 30.0% |
| AGCTAAATTAAGGCAAACTT+CGG | - | chr4_3:54393344-54393363 | None:intergenic | 30.0% | |
| AATAGAAAATGGCACATACA+AGG | + | chr4_3:54393453-54393472 | Msa0648010:CDS | 30.0% | |
| ! | CTTCATCCTTCTAATTTTTC+AGG | + | chr4_3:54393580-54393599 | Msa0648010:exon | 30.0% |
| ACATCTTTAAATACCCTGAA+AGG | - | chr4_3:54393811-54393830 | None:intergenic | 30.0% | |
| TGTAAGATGGAGAAAATCAA+GGG | - | chr4_3:54393968-54393987 | None:intergenic | 30.0% | |
| AACATTCACAAAGTGTAAGA+TGG | - | chr4_3:54393981-54394000 | None:intergenic | 30.0% | |
| !! | TTGTGAATGTTATTTCTGTG+TGG | + | chr4_3:54393990-54394009 | Msa0648010:three_prime_UTR | 30.0% |
| AAACTCTTCGATTCCTTCTT+CGG | + | chr4_3:54390367-54390386 | Msa0648010:CDS | 35.0% | |
| AAAATTGATTACCCGCATCT+CGG | - | chr4_3:54390398-54390417 | None:intergenic | 35.0% | |
| GCAATAATTCGATTATGTCG+GGG | + | chr4_3:54390833-54390852 | Msa0648010:intron | 35.0% | |
| TTGAATGGATGCAAACATGA+TGG | + | chr4_3:54391445-54391464 | Msa0648010:intron | 35.0% | |
| !! | ATGCAAACATGATGGTGTTT+TGG | + | chr4_3:54391453-54391472 | Msa0648010:intron | 35.0% |
| ! | AAAGTGTCCTCAATTTCTCT+TGG | - | chr4_3:54391620-54391639 | None:intergenic | 35.0% |
| AAGAGAAATTGAGGACACTT+TGG | + | chr4_3:54391619-54391638 | Msa0648010:CDS | 35.0% | |
| GACTGAAAAGTCAGGATATT+GGG | + | chr4_3:54391782-54391801 | Msa0648010:intron | 35.0% | |
| GATATTGGGCTAATGTATCA+AGG | + | chr4_3:54391796-54391815 | Msa0648010:intron | 35.0% | |
| CACAACATGTTATTCCAAAC+AGG | + | chr4_3:54391946-54391965 | Msa0648010:intron | 35.0% | |
| AGATCAATTCAAAGCCTGTT+TGG | - | chr4_3:54391963-54391982 | None:intergenic | 35.0% | |
| !! | ACAGGCTTTGAATTGATCTA+TGG | + | chr4_3:54391964-54391983 | Msa0648010:intron | 35.0% |
| ATGACACTGTTGAGCATAAA+CGG | - | chr4_3:54392016-54392035 | None:intergenic | 35.0% | |
| ATACCAGTGCAAACATTGAA+GGG | + | chr4_3:54392217-54392236 | Msa0648010:intron | 35.0% | |
| GGAATATGGTTCAAAGGTTA+AGG | + | chr4_3:54392279-54392298 | Msa0648010:intron | 35.0% | |
| GTAACAACCAGCATTATAAG+AGG | - | chr4_3:54392313-54392332 | None:intergenic | 35.0% | |
| ACCAGACTAATTACACAGAT+GGG | - | chr4_3:54392438-54392457 | None:intergenic | 35.0% | |
| TACCAGACTAATTACACAGA+TGG | - | chr4_3:54392439-54392458 | None:intergenic | 35.0% | |
| ! | ACTGACTTAGAATGTTCACA+TGG | - | chr4_3:54392637-54392656 | None:intergenic | 35.0% |
| CCACCATAGACAATTTATGA+CGG | + | chr4_3:54392816-54392835 | Msa0648010:intron | 35.0% | |
| CACCATAGACAATTTATGAC+GGG | + | chr4_3:54392817-54392836 | Msa0648010:intron | 35.0% | |
| ACCATAGACAATTTATGACG+GGG | + | chr4_3:54392818-54392837 | Msa0648010:intron | 35.0% | |
| !! | GTGTTTATATGGTGGATGTT+TGG | + | chr4_3:54392876-54392895 | Msa0648010:intron | 35.0% |
| !! | TGTTTTTCAAATCTTGAGGG+AGG | + | chr4_3:54392936-54392955 | Msa0648010:intron | 35.0% |
| TTGTGGTCAAGCATAATGAT+GGG | - | chr4_3:54393049-54393068 | None:intergenic | 35.0% | |
| TTTGTGGTCAAGCATAATGA+TGG | - | chr4_3:54393050-54393069 | None:intergenic | 35.0% | |
| ! | TACTAGTGAGACTTGAGTTT+TGG | + | chr4_3:54393079-54393098 | Msa0648010:intron | 35.0% |
| !! | TTTCCTCTTCTTTTCTAGAG+AGG | + | chr4_3:54393378-54393397 | Msa0648010:intron | 35.0% |
| ! | GATTACCAATCACGACATTT+TGG | - | chr4_3:54393739-54393758 | None:intergenic | 35.0% |
| GTGTAAGATGGAGAAAATCA+AGG | - | chr4_3:54393969-54393988 | None:intergenic | 35.0% | |
| TATGATTCAGTTAGATTGGG+TGG | + | chr4_3:54394103-54394122 | Msa0648010:three_prime_UTR | 35.0% | |
| AGAATCAGAAGAAACGCAAC+AGG | + | chr4_3:54390264-54390283 | Msa0648010:five_prime_UTR | 40.0% | |
| GAATCAGAAGAAACGCAACA+GGG | + | chr4_3:54390265-54390284 | Msa0648010:five_prime_UTR | 40.0% | |
| TCAGATCAAAGCAAAGGGAA+GGG | - | chr4_3:54390325-54390344 | None:intergenic | 40.0% | |
| ATCAGATCAAAGCAAAGGGA+AGG | - | chr4_3:54390326-54390345 | None:intergenic | 40.0% | |
| TGCGATCAGATCAAAGCAAA+GGG | - | chr4_3:54390330-54390349 | None:intergenic | 40.0% | |
| ATGCGATCAGATCAAAGCAA+AGG | - | chr4_3:54390331-54390350 | None:intergenic | 40.0% | |
| TTTGCTTTGATCTGATCGCA+TGG | + | chr4_3:54390330-54390349 | Msa0648010:exon | 40.0% | |
| TTGCTTTGATCTGATCGCAT+GGG | + | chr4_3:54390331-54390350 | Msa0648010:exon | 40.0% | |
| TAATTCGATTATGTCGGGGT+TGG | + | chr4_3:54390837-54390856 | Msa0648010:intron | 40.0% | |
| AATTCGATTATGTCGGGGTT+GGG | + | chr4_3:54390838-54390857 | Msa0648010:intron | 40.0% | |
| !! | AGCTCAACTGGTTTGAACTA+AGG | + | chr4_3:54390862-54390881 | Msa0648010:intron | 40.0% |
| !! | GCTCAACTGGTTTGAACTAA+GGG | + | chr4_3:54390863-54390882 | Msa0648010:intron | 40.0% |
| ! | CTGGTTTGAACTAAGGGATA+AGG | + | chr4_3:54390869-54390888 | Msa0648010:intron | 40.0% |
| TGAACTAAGGGATAAGGAGT+TGG | + | chr4_3:54390875-54390894 | Msa0648010:intron | 40.0% | |
| GATAAGGAGTTGGAGATTCA+AGG | + | chr4_3:54390885-54390904 | Msa0648010:intron | 40.0% | |
| TCTACTGTTCCTACAATTGG+TGG | + | chr4_3:54391088-54391107 | Msa0648010:intron | 40.0% | |
| CTACTGTTCCTACAATTGGT+GGG | + | chr4_3:54391089-54391108 | Msa0648010:intron | 40.0% | |
| GTGGGTTTCTGTGAATTGAA+TGG | + | chr4_3:54391430-54391449 | Msa0648010:intron | 40.0% | |
| CCTCAAAGCTTAAACAACAG+TGG | - | chr4_3:54391512-54391531 | None:intergenic | 40.0% | |
| ! | CCACTGTTGTTTAAGCTTTG+AGG | + | chr4_3:54391509-54391528 | Msa0648010:intron | 40.0% |
| !! | ATTTTCACGGTTTGGGATGT+TGG | + | chr4_3:54391591-54391610 | Msa0648010:CDS | 40.0% |
| AGAAATTGAGGACACTTTGG+AGG | + | chr4_3:54391622-54391641 | Msa0648010:CDS | 40.0% | |
| TCCTATAGGACTGAAAAGTC+AGG | + | chr4_3:54391774-54391793 | Msa0648010:intron | 40.0% | |
| ! | TCCTGACTTTTCAGTCCTAT+AGG | - | chr4_3:54391778-54391797 | None:intergenic | 40.0% |
| GGACTGAAAAGTCAGGATAT+TGG | + | chr4_3:54391781-54391800 | Msa0648010:intron | 40.0% | |
| TTGCTTTCCCAATTCTCTCA+CGG | - | chr4_3:54391872-54391891 | None:intergenic | 40.0% | |
| GAAAGCAAAGCAGGAATTTC+AGG | + | chr4_3:54391884-54391903 | Msa0648010:CDS | 40.0% | |
| TGACACTGTTGAGCATAAAC+GGG | - | chr4_3:54392015-54392034 | None:intergenic | 40.0% | |
| TATGCTCAACAGTGTCATCT+TGG | + | chr4_3:54392018-54392037 | Msa0648010:CDS | 40.0% | |
| !! | ACATACCAGGTCTTGTTTGT+TGG | - | chr4_3:54392050-54392069 | None:intergenic | 40.0% |
| CAGATCAAGATACACATACC+AGG | - | chr4_3:54392063-54392082 | None:intergenic | 40.0% | |
| CATACCAGTGCAAACATTGA+AGG | + | chr4_3:54392216-54392235 | Msa0648010:intron | 40.0% | |
| TACCAGTGCAAACATTGAAG+GGG | + | chr4_3:54392218-54392237 | Msa0648010:intron | 40.0% | |
| ACCCATCTGTGTAATTAGTC+TGG | + | chr4_3:54392434-54392453 | Msa0648010:intron | 40.0% | |
| ! | TCAACTGTACTTGGTTCTTG+TGG | - | chr4_3:54392503-54392522 | None:intergenic | 40.0% |
| ACACAAGTGACACAATCTGT+TGG | - | chr4_3:54392611-54392630 | None:intergenic | 40.0% | |
| ATGGTCCCATTTAACAACAC+TGG | - | chr4_3:54392755-54392774 | None:intergenic | 40.0% | |
| ! | AGTGTTGTTAAATGGGACCA+TGG | + | chr4_3:54392754-54392773 | Msa0648010:intron | 40.0% |
| CCGTCATAAATTGTCTATGG+TGG | - | chr4_3:54392819-54392838 | None:intergenic | 40.0% | |
| CCATAGACAATTTATGACGG+GGG | + | chr4_3:54392819-54392838 | Msa0648010:intron | 40.0% | |
| ! | CATACACTGGTTGGAATCAA+TGG | - | chr4_3:54392918-54392937 | None:intergenic | 40.0% |
| !! | TAGTGAGACTTGAGTTTTGG+TGG | + | chr4_3:54393082-54393101 | Msa0648010:intron | 40.0% |
| TAATCTTTCCCACATGATCG+TGG | + | chr4_3:54393173-54393192 | Msa0648010:intron | 40.0% | |
| AGTGATCAGCTAGCAATACA+AGG | - | chr4_3:54393298-54393317 | None:intergenic | 40.0% | |
| GGATACTCTTCATTAGGACT+AGG | + | chr4_3:54393555-54393574 | Msa0648010:CDS | 40.0% | |
| !! | CAATCACGACATTTTGGAAG+TGG | - | chr4_3:54393733-54393752 | None:intergenic | 40.0% |
| CACTTCCAAAATGTCGTGAT+TGG | + | chr4_3:54393731-54393750 | Msa0648010:three_prime_UTR | 40.0% | |
| ATACAGTTACTCTGCCTTTC+AGG | + | chr4_3:54393794-54393813 | Msa0648010:three_prime_UTR | 40.0% | |
| TACAGTTACTCTGCCTTTCA+GGG | + | chr4_3:54393795-54393814 | Msa0648010:three_prime_UTR | 40.0% | |
| AAGAAACGCAACAGGGAAGA+AGG | + | chr4_3:54390272-54390291 | Msa0648010:five_prime_UTR | 45.0% | |
| CAGATCAAAGCAAAGGGAAG+GGG | - | chr4_3:54390324-54390343 | None:intergenic | 45.0% | |
| !! | GTGGTTTAGGTTGTCATGCT+TGG | + | chr4_3:54391007-54391026 | Msa0648010:intron | 45.0% |
| TTGGAGGCCAAGAGAAATTG+AGG | + | chr4_3:54391610-54391629 | Msa0648010:CDS | 45.0% | |
| GAGAATTGGGAAAGCAAAGC+AGG | + | chr4_3:54391875-54391894 | Msa0648010:CDS | 45.0% | |
| ACTTGCCAACAAACAAGACC+TGG | + | chr4_3:54392042-54392061 | Msa0648010:CDS | 45.0% | |
| TACCCCTTCAATGTTTGCAC+TGG | - | chr4_3:54392223-54392242 | None:intergenic | 45.0% | |
| AGTGCAAACATTGAAGGGGT+AGG | + | chr4_3:54392222-54392241 | Msa0648010:intron | 45.0% | |
| !! | TCTTGTGGTTGGTGGTCTAT+TGG | - | chr4_3:54392488-54392507 | None:intergenic | 45.0% |
| ! | TACTTGGTTCTTGTGGTTGG+TGG | - | chr4_3:54392496-54392515 | None:intergenic | 45.0% |
| ! | CTGTACTTGGTTCTTGTGGT+TGG | - | chr4_3:54392499-54392518 | None:intergenic | 45.0% |
| CCCCCGTCATAAATTGTCTA+TGG | - | chr4_3:54392822-54392841 | None:intergenic | 45.0% | |
| !! | TCAATGGCGGATATGATGGA+AGG | - | chr4_3:54392902-54392921 | None:intergenic | 45.0% |
| !! | GGAATCAATGGCGGATATGA+TGG | - | chr4_3:54392906-54392925 | None:intergenic | 45.0% |
| ! | ACACTGGTTGGAATCAATGG+CGG | - | chr4_3:54392915-54392934 | None:intergenic | 45.0% |
| GTCATGAACCACGATCATGT+GGG | - | chr4_3:54393184-54393203 | None:intergenic | 45.0% | |
| AGTCATGAACCACGATCATG+TGG | - | chr4_3:54393185-54393204 | None:intergenic | 45.0% | |
| ! | GCTCCTCTCTAGAAAAGAAG+AGG | - | chr4_3:54393384-54393403 | None:intergenic | 45.0% |
| ! | TTTCTAGAGAGGAGCGATGA+CGG | + | chr4_3:54393389-54393408 | Msa0648010:intron | 45.0% |
| ! | TAAGGGTGATGGCCTTTATG+AGG | + | chr4_3:54393488-54393507 | Msa0648010:CDS | 45.0% |
| ! | AAGGGTGATGGCCTTTATGA+GGG | + | chr4_3:54393489-54393508 | Msa0648010:CDS | 45.0% |
| TGATGGCCTTTATGAGGGTT+TGG | + | chr4_3:54393494-54393513 | Msa0648010:CDS | 45.0% | |
| ACCAGTCCAAACCCTCATAA+AGG | - | chr4_3:54393503-54393522 | None:intergenic | 45.0% | |
| CTTCATCTCCTTCAGTGTTG+AGG | - | chr4_3:54393529-54393548 | None:intergenic | 45.0% | |
| CTCAACACTGAAGGAGATGA+AGG | + | chr4_3:54393527-54393546 | Msa0648010:CDS | 45.0% | |
| GCTGCTGGATACTCTTCATT+AGG | + | chr4_3:54393549-54393568 | Msa0648010:CDS | 45.0% | |
| !!! | GGTATTTTGGCCTTGCGATT+TGG | + | chr4_3:54393689-54393708 | Msa0648010:intron | 45.0% |
| TGCACATTCACCAAATCGCA+AGG | - | chr4_3:54393702-54393721 | None:intergenic | 45.0% | |
| GGTATCCAAGACCTTCTATC+CGG | - | chr4_3:54393923-54393942 | None:intergenic | 45.0% | |
| GGATAGAAGGTCTTGGATAC+CGG | + | chr4_3:54393922-54393941 | Msa0648010:three_prime_UTR | 45.0% | |
| GGGAGAATGAACAACTGATC+CGG | - | chr4_3:54393948-54393967 | None:intergenic | 45.0% | |
| GCAACAGGGAAGAAGGAACA+AGG | + | chr4_3:54390279-54390298 | Msa0648010:five_prime_UTR | 50.0% | |
| CATCTCGGTATTGCCGAAGA+AGG | - | chr4_3:54390383-54390402 | None:intergenic | 50.0% | |
| TCTTCGGCAATACCGAGATG+CGG | + | chr4_3:54390383-54390402 | Msa0648010:CDS | 50.0% | |
| !! | ATGCTTGGTCTTGATGCTGC+TGG | + | chr4_3:54391022-54391041 | Msa0648010:CDS | 50.0% |
| ! | TTCACGGTTTGGGATGTTGG+AGG | + | chr4_3:54391594-54391613 | Msa0648010:CDS | 50.0% |
| AGTCTGGACCGTGAGAGAAT+TGG | + | chr4_3:54391861-54391880 | Msa0648010:CDS | 50.0% | |
| GTCTGGACCGTGAGAGAATT+GGG | + | chr4_3:54391862-54391881 | Msa0648010:CDS | 50.0% | |
| GATACGCATGCACGTGCAAA+AGG | - | chr4_3:54392351-54392370 | None:intergenic | 50.0% | |
| !! | TGGTTGGTGGTCTATTGGCA+GGG | - | chr4_3:54392483-54392502 | None:intergenic | 50.0% |
| !!! | GGAATGGCATGGCGGATTTT+TGG | + | chr4_3:54392789-54392808 | Msa0648010:intron | 50.0% |
| ! | GCTGCAAGGGCGTGTTTATA+TGG | + | chr4_3:54392865-54392884 | Msa0648010:intron | 50.0% |
| ! | GCAAGGGCGTGTTTATATGG+TGG | + | chr4_3:54392868-54392887 | Msa0648010:intron | 50.0% |
| !! | AGGGAAGTGTGTGACGGATT+AGG | + | chr4_3:54393414-54393433 | Msa0648010:CDS | 50.0% |
| ! | ACAAGGCACCTGTGCACTTA+AGG | + | chr4_3:54393470-54393489 | Msa0648010:CDS | 50.0% |
| ! | CAAGGCACCTGTGCACTTAA+GGG | + | chr4_3:54393471-54393490 | Msa0648010:CDS | 50.0% |
| ACCTGTGCACTTAAGGGTGA+TGG | + | chr4_3:54393477-54393496 | Msa0648010:CDS | 50.0% | |
| GCCTTTATGAGGGTTTGGAC+TGG | + | chr4_3:54393499-54393518 | Msa0648010:CDS | 50.0% | |
| CTGGTTGTCCTCAACACTGA+AGG | + | chr4_3:54393518-54393537 | Msa0648010:CDS | 50.0% | |
| GATACCCCACGTTAAGTGCA+CGG | + | chr4_3:54393894-54393913 | Msa0648010:three_prime_UTR | 50.0% | |
| ATACCCCACGTTAAGTGCAC+GGG | + | chr4_3:54393895-54393914 | Msa0648010:three_prime_UTR | 50.0% | |
| GAATGAACAACTGATCCGGC+CGG | - | chr4_3:54393944-54393963 | None:intergenic | 50.0% | |
| CTTCGGCAATACCGAGATGC+GGG | + | chr4_3:54390384-54390403 | Msa0648010:CDS | 55.0% | |
| ! | CATGCACGTGCAAAAGGTGC+AGG | - | chr4_3:54392345-54392364 | None:intergenic | 55.0% |
| !! | GGTTGGTGGTCTATTGGCAG+GGG | - | chr4_3:54392482-54392501 | None:intergenic | 55.0% |
| !! | GTGGTTGGTGGTCTATTGGC+AGG | - | chr4_3:54392484-54392503 | None:intergenic | 55.0% |
| !! | AGCCTATGGTGTTGCCATGG+CGG | - | chr4_3:54392848-54392867 | None:intergenic | 55.0% |
| !! | TGCAGCCTATGGTGTTGCCA+TGG | - | chr4_3:54392851-54392870 | None:intergenic | 55.0% |
| TGGCAACACCATAGGCTGCA+AGG | + | chr4_3:54392851-54392870 | Msa0648010:intron | 55.0% | |
| GGCAACACCATAGGCTGCAA+GGG | + | chr4_3:54392852-54392871 | Msa0648010:intron | 55.0% | |
| AAACACGCCCTTGCAGCCTA+TGG | - | chr4_3:54392862-54392881 | None:intergenic | 55.0% | |
| ! | ACGGCAAGGGAAGTGTGTGA+CGG | + | chr4_3:54393408-54393427 | Msa0648010:CDS | 55.0% |
| GCCATCACCCTTAAGTGCAC+AGG | - | chr4_3:54393481-54393500 | None:intergenic | 55.0% | |
| CTGAAGGAGATGAAGGCTGC+TGG | + | chr4_3:54393534-54393553 | Msa0648010:CDS | 55.0% | |
| GTACCCGTGCACTTAACGTG+GGG | - | chr4_3:54393901-54393920 | None:intergenic | 55.0% | |
| GGTACCCGTGCACTTAACGT+GGG | - | chr4_3:54393902-54393921 | None:intergenic | 55.0% | |
| CACGTTAAGTGCACGGGTAC+CGG | + | chr4_3:54393901-54393920 | Msa0648010:three_prime_UTR | 55.0% | |
| !! | GGGTACCGGATAGAAGGTCT+TGG | + | chr4_3:54393915-54393934 | Msa0648010:three_prime_UTR | 55.0% |
| AGAAGGTCTTGGATACCGGC+CGG | + | chr4_3:54393926-54393945 | Msa0648010:three_prime_UTR | 55.0% | |
| TCGGGGTTGGGTAGCTCAAC+TGG | + | chr4_3:54390850-54390869 | Msa0648010:intron | 60.0% | |
| !! | GCCTATGGTGTTGCCATGGC+GGG | - | chr4_3:54392847-54392866 | None:intergenic | 60.0% |
| ! | AGAGAGGAGCGATGACGGCA+AGG | + | chr4_3:54393394-54393413 | Msa0648010:intron | 60.0% |
| ! | GAGAGGAGCGATGACGGCAA+GGG | + | chr4_3:54393395-54393414 | Msa0648010:intron | 60.0% |
| CGGTACCCGTGCACTTAACG+TGG | - | chr4_3:54393903-54393922 | None:intergenic | 60.0% | |
| !! | GTGCACGGGTACCGGATAGA+AGG | + | chr4_3:54393909-54393928 | Msa0648010:three_prime_UTR | 60.0% |
| ATGGGACCATGGCGCTGCCA+TGG | + | chr4_3:54392765-54392784 | Msa0648010:intron | 65.0% | |
| ATTCCGCCATGGCAGCGCCA+TGG | - | chr4_3:54392774-54392793 | None:intergenic | 65.0% | |
| ! | ATGGCGCTGCCATGGCGGAA+TGG | + | chr4_3:54392773-54392792 | Msa0648010:intron | 65.0% |
| ! | GCTGCCATGGCGGAATGGCA+TGG | + | chr4_3:54392778-54392797 | Msa0648010:intron | 65.0% |
| ! | GCCATGGCGGAATGGCATGG+CGG | + | chr4_3:54392781-54392800 | Msa0648010:intron | 65.0% |
| TCCGCCATGCCATTCCGCCA+TGG | - | chr4_3:54392785-54392804 | None:intergenic | 65.0% | |
| GCCCGCCATGGCAACACCAT+AGG | + | chr4_3:54392843-54392862 | Msa0648010:intron | 65.0% | |
| GGACCATGGCGCTGCCATGG+CGG | + | chr4_3:54392768-54392787 | Msa0648010:intron | 70.0% | |
| !! | TATGACGGGGGTGCCCGCCA+TGG | + | chr4_3:54392831-54392850 | Msa0648010:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 54390208 | 54394191 | 54390208 | ID=Msa0648010;Name=Msa0648010 |
| chr4_3 | mRNA | 54390208 | 54394191 | 54390208 | ID=Msa0648010-mRNA-1;Parent=Msa0648010;Name=Msa0648010-mRNA-1;_AED=0.06;_eAED=0.06;_QI=141|1|1|1|0.83|0.71|7|510|195 |
| chr4_3 | exon | 54390208 | 54390405 | 54390208 | ID=Msa0648010-mRNA-1:exon:13742;Parent=Msa0648010-mRNA-1 |
| chr4_3 | exon | 54391016 | 54391106 | 54391016 | ID=Msa0648010-mRNA-1:exon:13743;Parent=Msa0648010-mRNA-1 |
| chr4_3 | exon | 54391556 | 54391671 | 54391556 | ID=Msa0648010-mRNA-1:exon:13744;Parent=Msa0648010-mRNA-1 |
| chr4_3 | exon | 54391846 | 54391905 | 54391846 | ID=Msa0648010-mRNA-1:exon:13745;Parent=Msa0648010-mRNA-1 |
| chr4_3 | exon | 54391998 | 54392063 | 54391998 | ID=Msa0648010-mRNA-1:exon:13746;Parent=Msa0648010-mRNA-1 |
| chr4_3 | exon | 54393396 | 54393601 | 54393396 | ID=Msa0648010-mRNA-1:exon:13747;Parent=Msa0648010-mRNA-1 |
| chr4_3 | exon | 54393690 | 54394191 | 54393690 | ID=Msa0648010-mRNA-1:exon:13748;Parent=Msa0648010-mRNA-1 |
| chr4_3 | five_prime_UTR | 54390208 | 54390348 | 54390208 | ID=Msa0648010-mRNA-1:five_prime_utr;Parent=Msa0648010-mRNA-1 |
| chr4_3 | CDS | 54390349 | 54390405 | 54390349 | ID=Msa0648010-mRNA-1:cds;Parent=Msa0648010-mRNA-1 |
| chr4_3 | CDS | 54391016 | 54391106 | 54391016 | ID=Msa0648010-mRNA-1:cds;Parent=Msa0648010-mRNA-1 |
| chr4_3 | CDS | 54391556 | 54391671 | 54391556 | ID=Msa0648010-mRNA-1:cds;Parent=Msa0648010-mRNA-1 |
| chr4_3 | CDS | 54391846 | 54391905 | 54391846 | ID=Msa0648010-mRNA-1:cds;Parent=Msa0648010-mRNA-1 |
| chr4_3 | CDS | 54391998 | 54392063 | 54391998 | ID=Msa0648010-mRNA-1:cds;Parent=Msa0648010-mRNA-1 |
| chr4_3 | CDS | 54393396 | 54393593 | 54393396 | ID=Msa0648010-mRNA-1:cds;Parent=Msa0648010-mRNA-1 |
| chr4_3 | three_prime_UTR | 54393594 | 54393601 | 54393594 | ID=Msa0648010-mRNA-1:three_prime_utr;Parent=Msa0648010-mRNA-1 |
| chr4_3 | three_prime_UTR | 54393690 | 54394191 | 54393690 | ID=Msa0648010-mRNA-1:three_prime_utr;Parent=Msa0648010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
