AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1085470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085470 MtrunA17_Chr8g0377361 100.000 92 0 0 1 92 1 92 2.55e-67 196
Msa1085470 MtrunA17_Chr3g0095021 90.000 50 5 0 1 50 53 102 4.22e-29 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1085470 AT1G67350.2 73.810 84 22 0 1 84 1 84 1.38e-45 142
Msa1085470 AT1G67350.1 73.810 84 22 0 1 84 1 84 1.38e-45 142

Find 52 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTAAGATTTAACTGTTC+TGG 0.229897 7_2:+86238154 Msa1085470:three_prime_UTR
CATCGTCACAGAAGTGAAAA+TGG 0.245780 7_2:+86236521 Msa1085470:intron
TAGAACTATGGTGTTATATT+AGG 0.246291 7_2:+86238015 Msa1085470:three_prime_UTR
CTGCTGCACCGTTAAGAAAA+AGG 0.287608 7_2:+86236408 Msa1085470:five_prime_UTR
AGTTACCCTATGCGACCTTA+TGG 0.310546 7_2:+86236672 Msa1085470:CDS
GGGTCTGTAATGAACTATTT+TGG 0.311085 7_2:+86237973 Msa1085470:three_prime_UTR
AATCTCTTTATTTACATAGT+TGG 0.340518 7_2:+86238110 Msa1085470:three_prime_UTR
AATCTACGATCCCTTTCATT+TGG 0.347988 7_2:-86236594 None:intergenic
CTATGCGACCTTATGGGTTC+TGG 0.350279 7_2:+86236679 Msa1085470:CDS
AGTGAAAATGGCTTTCATAA+TGG 0.354869 7_2:+86236533 Msa1085470:exon
TAGTGGCCAATTGTGCTTCC+TGG 0.360865 7_2:+86238062 Msa1085470:three_prime_UTR
ATGAAAGGGATCGTAGATTC+AGG 0.366060 7_2:+86236598 Msa1085470:CDS
AATAAAGTTTCATAGAACTA+TGG 0.369039 7_2:+86238003 Msa1085470:three_prime_UTR
ATCTCTTTATTTACATAGTT+GGG 0.371188 7_2:+86238111 Msa1085470:three_prime_UTR
AATGGAATTCGCTGAGAATC+TGG 0.378487 7_2:+86236551 Msa1085470:CDS
ATATTAGGTGTTTCTCCATT+GGG 0.409394 7_2:+86238030 Msa1085470:three_prime_UTR
AAACAGCCAGGAAGCACAAT+TGG 0.424037 7_2:-86238068 None:intergenic
TAACGGTGCAGCAGTGTCTC+TGG 0.427524 7_2:-86236399 None:intergenic
GTTACCCTATGCGACCTTAT+GGG 0.431260 7_2:+86236673 Msa1085470:CDS
TATATTAGGTGTTTCTCCAT+TGG 0.438705 7_2:+86238029 Msa1085470:three_prime_UTR
CCTCATTTCGACGACGAGGC+AGG 0.443390 7_2:-86236798 None:intergenic
TGCAGCAGTGTCTCTGGAAT+CGG 0.454691 7_2:-86236393 None:intergenic
GAATCTGGTTCTGAAATTGA+TGG 0.457082 7_2:+86236566 Msa1085470:CDS
CCATTGGGAATATAAATTAG+TGG 0.458740 7_2:+86238045 Msa1085470:three_prime_UTR
CCCAAGCAAGCTGAGAGTTA+TGG 0.460911 7_2:-86236713 None:intergenic
GCCATAACTCTCAGCTTGCT+TGG 0.460971 7_2:+86236712 Msa1085470:CDS
CCATAACTCTCAGCTTGCTT+GGG 0.463504 7_2:+86236713 Msa1085470:CDS
AATGTAACATGCAACAGAAC+AGG 0.481138 7_2:-86237941 None:intergenic
GCTCAGATTAGTCAAGTTGC+CGG 0.484929 7_2:+86236738 Msa1085470:CDS
TGTGAAAGGATTTCATCATA+AGG 0.496680 7_2:-86236771 None:intergenic
CCTGCCTCGTCGTCGAAATG+AGG 0.497822 7_2:+86236798 Msa1085470:CDS
CTCATTTCGACGACGAGGCA+GGG 0.505092 7_2:-86236797 None:intergenic
CCACTAATTTATATTCCCAA+TGG 0.511619 7_2:-86238045 None:intergenic
TCAAATGTCCAGAACCCATA+AGG 0.513007 7_2:-86236687 None:intergenic
TAGTCAAGTTGCCGGTCGTA+GGG 0.521121 7_2:+86236746 Msa1085470:CDS
GATGGAAGATCCAAATGAAA+GGG 0.524216 7_2:+86236584 Msa1085470:CDS
CATGTTACATTGACTACACC+GGG 0.527959 7_2:+86237953 Msa1085470:three_prime_UTR
TGATGGAAGATCCAAATGAA+AGG 0.535018 7_2:+86236583 Msa1085470:CDS
AGATAGATGCGCGAAGACGA+AGG 0.541002 7_2:+86236641 Msa1085470:CDS
CATAAAACAGACAAACAGCC+AGG 0.549333 7_2:-86238080 None:intergenic
ACGAAAACTCATCGAGGAGA+AGG 0.557551 7_2:+86236364 Msa1085470:five_prime_UTR
TGAAAGGGATCGTAGATTCA+GGG 0.568833 7_2:+86236599 Msa1085470:CDS
CAGAACCCATAAGGTCGCAT+AGG 0.571457 7_2:-86236678 None:intergenic
GCGCGAAGACGAAGGAGATG+TGG 0.571625 7_2:+86236649 Msa1085470:CDS
TTAGTCAAGTTGCCGGTCGT+AGG 0.572671 7_2:+86236745 Msa1085470:CDS
ATCATAAGGATCCCTACGAC+CGG 0.573881 7_2:-86236757 None:intergenic
GCATGTTACATTGACTACAC+CGG 0.580850 7_2:+86237952 Msa1085470:three_prime_UTR
AGAACCCATAAGGTCGCATA+GGG 0.582926 7_2:-86236677 None:intergenic
ACGAGGCAGGGTAATGTGAA+AGG 0.598363 7_2:-86236785 None:intergenic
AAAATAGTTCATTACAGACC+CGG 0.668711 7_2:-86237971 None:intergenic
AAAACCTCATTTCGACGACG+AGG 0.717022 7_2:-86236802 None:intergenic
GGTTGAACGAAAACTCATCG+AGG 0.759935 7_2:+86236358 Msa1085470:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTAATTTCACAATTT+AGG + chr7_2:86236467-86236486 Msa1085470:intron 15.0%
!!! CAATTTAATTTCACAATTTA+GGG + chr7_2:86236468-86236487 Msa1085470:intron 15.0%
!! CAAATAAAAATAACATGTTA+GGG - chr7_2:86236840-86236859 None:intergenic 15.0%
!! TCAAATAAAAATAACATGTT+AGG - chr7_2:86236841-86236860 None:intergenic 15.0%
!!! AACATGTTATTTTTATTTGA+TGG + chr7_2:86236841-86236860 Msa1085470:intron 15.0%
!!! GATAAACGTTTTTTTTTTAT+AGG + chr7_2:86237132-86237151 Msa1085470:intron 15.0%
!!! AATTAGTAATAATTTGTTAG+AGG + chr7_2:86237166-86237185 Msa1085470:intron 15.0%
!!! ATTAGTAATAATTTGTTAGA+GGG + chr7_2:86237167-86237186 Msa1085470:intron 15.0%
!! TATAAATTAAGGAAAAAGAT+GGG - chr7_2:86237703-86237722 None:intergenic 15.0%
!! TTATAAATTAAGGAAAAAGA+TGG - chr7_2:86237704-86237723 None:intergenic 15.0%
!!! ATTTAATTCAATTTTTGTCT+TGG + chr7_2:86238186-86238205 Msa1085470:three_prime_UTR 15.0%
!!! TCAATTTAATTTCACAATTT+AGG + chr7_2:86236467-86236486 Msa1085470:intron 15.0%
!!! CAATTTAATTTCACAATTTA+GGG + chr7_2:86236468-86236487 Msa1085470:intron 15.0%
!! CAAATAAAAATAACATGTTA+GGG - chr7_2:86236840-86236859 None:intergenic 15.0%
!! TCAAATAAAAATAACATGTT+AGG - chr7_2:86236841-86236860 None:intergenic 15.0%
!!! AACATGTTATTTTTATTTGA+TGG + chr7_2:86236841-86236860 Msa1085470:intron 15.0%
!!! GATAAACGTTTTTTTTTTAT+AGG + chr7_2:86237132-86237151 Msa1085470:intron 15.0%
!!! AATTAGTAATAATTTGTTAG+AGG + chr7_2:86237166-86237185 Msa1085470:intron 15.0%
!!! ATTAGTAATAATTTGTTAGA+GGG + chr7_2:86237167-86237186 Msa1085470:intron 15.0%
!! TATAAATTAAGGAAAAAGAT+GGG - chr7_2:86237703-86237722 None:intergenic 15.0%
!! TTATAAATTAAGGAAAAAGA+TGG - chr7_2:86237704-86237723 None:intergenic 15.0%
!!! TGTTTTTACCTTTTTCTTAA+CGG - chr7_2:86236419-86236438 None:intergenic 20.0%
!! TTTATATAACCGATCTAATT+TGG + chr7_2:86236491-86236510 Msa1085470:intron 20.0%
!! TTATATAACCGATCTAATTT+GGG + chr7_2:86236492-86236511 Msa1085470:intron 20.0%
!! AAAGATTAAGTTTCTCATAT+AGG - chr7_2:86237289-86237308 None:intergenic 20.0%
!! TGGAAGAGATTTATAAATTA+AGG - chr7_2:86237714-86237733 None:intergenic 20.0%
!! AATAAAGTTTCATAGAACTA+TGG + chr7_2:86238003-86238022 Msa1085470:three_prime_UTR 20.0%
!!! AATCTCTTTATTTACATAGT+TGG + chr7_2:86238110-86238129 Msa1085470:three_prime_UTR 20.0%
!!! ATCTCTTTATTTACATAGTT+GGG + chr7_2:86238111-86238130 Msa1085470:three_prime_UTR 20.0%
!!! TGTTTTTACCTTTTTCTTAA+CGG - chr7_2:86236419-86236438 None:intergenic 20.0%
!! TTTATATAACCGATCTAATT+TGG + chr7_2:86236491-86236510 Msa1085470:intron 20.0%
!! TTATATAACCGATCTAATTT+GGG + chr7_2:86236492-86236511 Msa1085470:intron 20.0%
!! AAAGATTAAGTTTCTCATAT+AGG - chr7_2:86237289-86237308 None:intergenic 20.0%
!! TGGAAGAGATTTATAAATTA+AGG - chr7_2:86237714-86237733 None:intergenic 20.0%
!! AATAAAGTTTCATAGAACTA+TGG + chr7_2:86238003-86238022 Msa1085470:three_prime_UTR 20.0%
!!! AATCTCTTTATTTACATAGT+TGG + chr7_2:86238110-86238129 Msa1085470:three_prime_UTR 20.0%
!!! ATCTCTTTATTTACATAGTT+GGG + chr7_2:86238111-86238130 Msa1085470:three_prime_UTR 20.0%
! TATATAACCGATCTAATTTG+GGG + chr7_2:86236493-86236512 Msa1085470:intron 25.0%
!! TTTATTTGATGGCTATATGT+TGG + chr7_2:86236852-86236871 Msa1085470:intron 25.0%
! GTTTATCATAGAGTAAATGA+CGG - chr7_2:86237119-86237138 None:intergenic 25.0%
! GAGAAACTTAATCTTTAATG+TGG + chr7_2:86237293-86237312 Msa1085470:intron 25.0%
! ATAACCGTATTTAACAACAA+TGG + chr7_2:86237500-86237519 Msa1085470:intron 25.0%
! CATCAGTTAATAGGAAAAAA+AGG - chr7_2:86237568-86237587 None:intergenic 25.0%
! CATGTTTATCATCAGTTAAT+AGG - chr7_2:86237577-86237596 None:intergenic 25.0%
! TAACTGATGATAAACATGTA+TGG + chr7_2:86237579-86237598 Msa1085470:intron 25.0%
!!! GTTTTCAAGCAATACAATAA+AGG - chr7_2:86237630-86237649 None:intergenic 25.0%
! AACTTTCAACAATCTATGAT+TGG - chr7_2:86237734-86237753 None:intergenic 25.0%
! TGAAAAACTGGAACTATATT+GGG + chr7_2:86237882-86237901 Msa1085470:three_prime_UTR 25.0%
!!! TAGAACTATGGTGTTATATT+AGG + chr7_2:86238015-86238034 Msa1085470:three_prime_UTR 25.0%
!! TGTTTAAGATTTAACTGTTC+TGG + chr7_2:86238154-86238173 Msa1085470:three_prime_UTR 25.0%
! TATATAACCGATCTAATTTG+GGG + chr7_2:86236493-86236512 Msa1085470:intron 25.0%
!! TTTATTTGATGGCTATATGT+TGG + chr7_2:86236852-86236871 Msa1085470:intron 25.0%
! GTTTATCATAGAGTAAATGA+CGG - chr7_2:86237119-86237138 None:intergenic 25.0%
! GAGAAACTTAATCTTTAATG+TGG + chr7_2:86237293-86237312 Msa1085470:intron 25.0%
! ATAACCGTATTTAACAACAA+TGG + chr7_2:86237500-86237519 Msa1085470:intron 25.0%
! CATCAGTTAATAGGAAAAAA+AGG - chr7_2:86237568-86237587 None:intergenic 25.0%
! CATGTTTATCATCAGTTAAT+AGG - chr7_2:86237577-86237596 None:intergenic 25.0%
! TAACTGATGATAAACATGTA+TGG + chr7_2:86237579-86237598 Msa1085470:intron 25.0%
!!! GTTTTCAAGCAATACAATAA+AGG - chr7_2:86237630-86237649 None:intergenic 25.0%
! AACTTTCAACAATCTATGAT+TGG - chr7_2:86237734-86237753 None:intergenic 25.0%
! TGAAAAACTGGAACTATATT+GGG + chr7_2:86237882-86237901 Msa1085470:three_prime_UTR 25.0%
!!! TAGAACTATGGTGTTATATT+AGG + chr7_2:86238015-86238034 Msa1085470:three_prime_UTR 25.0%
!! TGTTTAAGATTTAACTGTTC+TGG + chr7_2:86238154-86238173 Msa1085470:three_prime_UTR 25.0%
ATGAAATTGAGAAATGAGAG+TGG - chr7_2:86236445-86236464 None:intergenic 30.0%
TGAAAATCCCCAAATTAGAT+CGG - chr7_2:86236503-86236522 None:intergenic 30.0%
AGTGAAAATGGCTTTCATAA+TGG + chr7_2:86236533-86236552 Msa1085470:exon 30.0%
TGTGAAAGGATTTCATCATA+AGG - chr7_2:86236774-86236793 None:intergenic 30.0%
!! AGTAATAATTTGTTAGAGGG+AGG + chr7_2:86237170-86237189 Msa1085470:intron 30.0%
!! GTAATAATTTGTTAGAGGGA+GGG + chr7_2:86237171-86237190 Msa1085470:intron 30.0%
!! TAATAATTTGTTAGAGGGAG+GGG + chr7_2:86237172-86237191 Msa1085470:intron 30.0%
ATTGTTCTGCATTAGCTATT+TGG - chr7_2:86237434-86237453 None:intergenic 30.0%
GTTGTTAAATACGGTTATAG+TGG - chr7_2:86237498-86237517 None:intergenic 30.0%
! TCAGCCATTGTTGTTAAATA+CGG - chr7_2:86237507-86237526 None:intergenic 30.0%
AATGCATTGCATGATATGAT+AGG - chr7_2:86237661-86237680 None:intergenic 30.0%
AAAAAGATGGGAAAAAATGG+TGG - chr7_2:86237691-86237710 None:intergenic 30.0%
AGGAAAAAGATGGGAAAAAA+TGG - chr7_2:86237694-86237713 None:intergenic 30.0%
AAGTGTTCTTTGTGAAAAAC+TGG + chr7_2:86237870-86237889 Msa1085470:three_prime_UTR 30.0%
GTGAAAAACTGGAACTATAT+TGG + chr7_2:86237881-86237900 Msa1085470:three_prime_UTR 30.0%
AAAATAGTTCATTACAGACC+CGG - chr7_2:86237974-86237993 None:intergenic 30.0%
TATATTAGGTGTTTCTCCAT+TGG + chr7_2:86238029-86238048 Msa1085470:three_prime_UTR 30.0%
ATATTAGGTGTTTCTCCATT+GGG + chr7_2:86238030-86238049 Msa1085470:three_prime_UTR 30.0%
CCACTAATTTATATTCCCAA+TGG - chr7_2:86238048-86238067 None:intergenic 30.0%
CCATTGGGAATATAAATTAG+TGG + chr7_2:86238045-86238064 Msa1085470:three_prime_UTR 30.0%
ATGAAATTGAGAAATGAGAG+TGG - chr7_2:86236445-86236464 None:intergenic 30.0%
TGAAAATCCCCAAATTAGAT+CGG - chr7_2:86236503-86236522 None:intergenic 30.0%
AGTGAAAATGGCTTTCATAA+TGG + chr7_2:86236533-86236552 Msa1085470:exon 30.0%
TGTGAAAGGATTTCATCATA+AGG - chr7_2:86236774-86236793 None:intergenic 30.0%
!! AGTAATAATTTGTTAGAGGG+AGG + chr7_2:86237170-86237189 Msa1085470:intron 30.0%
!! GTAATAATTTGTTAGAGGGA+GGG + chr7_2:86237171-86237190 Msa1085470:intron 30.0%
!! TAATAATTTGTTAGAGGGAG+GGG + chr7_2:86237172-86237191 Msa1085470:intron 30.0%
ATTGTTCTGCATTAGCTATT+TGG - chr7_2:86237434-86237453 None:intergenic 30.0%
GTTGTTAAATACGGTTATAG+TGG - chr7_2:86237498-86237517 None:intergenic 30.0%
! TCAGCCATTGTTGTTAAATA+CGG - chr7_2:86237507-86237526 None:intergenic 30.0%
AATGCATTGCATGATATGAT+AGG - chr7_2:86237661-86237680 None:intergenic 30.0%
AAAAAGATGGGAAAAAATGG+TGG - chr7_2:86237691-86237710 None:intergenic 30.0%
AGGAAAAAGATGGGAAAAAA+TGG - chr7_2:86237694-86237713 None:intergenic 30.0%
AAGTGTTCTTTGTGAAAAAC+TGG + chr7_2:86237870-86237889 Msa1085470:three_prime_UTR 30.0%
GTGAAAAACTGGAACTATAT+TGG + chr7_2:86237881-86237900 Msa1085470:three_prime_UTR 30.0%
AAAATAGTTCATTACAGACC+CGG - chr7_2:86237974-86237993 None:intergenic 30.0%
TATATTAGGTGTTTCTCCAT+TGG + chr7_2:86238029-86238048 Msa1085470:three_prime_UTR 30.0%
ATATTAGGTGTTTCTCCATT+GGG + chr7_2:86238030-86238049 Msa1085470:three_prime_UTR 30.0%
CCACTAATTTATATTCCCAA+TGG - chr7_2:86238048-86238067 None:intergenic 30.0%
CCATTGGGAATATAAATTAG+TGG + chr7_2:86238045-86238064 Msa1085470:three_prime_UTR 30.0%
!! GAATCTGGTTCTGAAATTGA+TGG + chr7_2:86236566-86236585 Msa1085470:CDS 35.0%
TGATGGAAGATCCAAATGAA+AGG + chr7_2:86236583-86236602 Msa1085470:CDS 35.0%
GATGGAAGATCCAAATGAAA+GGG + chr7_2:86236584-86236603 Msa1085470:CDS 35.0%
AATCTACGATCCCTTTCATT+TGG - chr7_2:86236597-86236616 None:intergenic 35.0%
TTGTGTGTAACTAGATGTGT+TGG + chr7_2:86236959-86236978 Msa1085470:intron 35.0%
!! AATAATTTGTTAGAGGGAGG+GGG + chr7_2:86237173-86237192 Msa1085470:intron 35.0%
GAATTCAGTGTTGTCAATTG+CGG + chr7_2:86237324-86237343 Msa1085470:intron 35.0%
!! TTCTGAAATAGCAGCTATAG+TGG - chr7_2:86237402-86237421 None:intergenic 35.0%
ACAGTGCATTAGCAAAACAA+AGG - chr7_2:86237785-86237804 None:intergenic 35.0%
AATGTAACATGCAACAGAAC+AGG - chr7_2:86237944-86237963 None:intergenic 35.0%
! GGGTCTGTAATGAACTATTT+TGG + chr7_2:86237973-86237992 Msa1085470:three_prime_UTR 35.0%
! TGGCTGTTTGTCTGTTTTAT+GGG + chr7_2:86238082-86238101 Msa1085470:three_prime_UTR 35.0%
!! GAATCTGGTTCTGAAATTGA+TGG + chr7_2:86236566-86236585 Msa1085470:CDS 35.0%
TGATGGAAGATCCAAATGAA+AGG + chr7_2:86236583-86236602 Msa1085470:CDS 35.0%
GATGGAAGATCCAAATGAAA+GGG + chr7_2:86236584-86236603 Msa1085470:CDS 35.0%
AATCTACGATCCCTTTCATT+TGG - chr7_2:86236597-86236616 None:intergenic 35.0%
TTGTGTGTAACTAGATGTGT+TGG + chr7_2:86236959-86236978 Msa1085470:intron 35.0%
!! AATAATTTGTTAGAGGGAGG+GGG + chr7_2:86237173-86237192 Msa1085470:intron 35.0%
GAATTCAGTGTTGTCAATTG+CGG + chr7_2:86237324-86237343 Msa1085470:intron 35.0%
!! TTCTGAAATAGCAGCTATAG+TGG - chr7_2:86237402-86237421 None:intergenic 35.0%
ACAGTGCATTAGCAAAACAA+AGG - chr7_2:86237785-86237804 None:intergenic 35.0%
AATGTAACATGCAACAGAAC+AGG - chr7_2:86237944-86237963 None:intergenic 35.0%
! GGGTCTGTAATGAACTATTT+TGG + chr7_2:86237973-86237992 Msa1085470:three_prime_UTR 35.0%
! TGGCTGTTTGTCTGTTTTAT+GGG + chr7_2:86238082-86238101 Msa1085470:three_prime_UTR 35.0%
CATCGTCACAGAAGTGAAAA+TGG + chr7_2:86236521-86236540 Msa1085470:intron 40.0%
AATGGAATTCGCTGAGAATC+TGG + chr7_2:86236551-86236570 Msa1085470:CDS 40.0%
ATGAAAGGGATCGTAGATTC+AGG + chr7_2:86236598-86236617 Msa1085470:CDS 40.0%
TGAAAGGGATCGTAGATTCA+GGG + chr7_2:86236599-86236618 Msa1085470:CDS 40.0%
TCAAATGTCCAGAACCCATA+AGG - chr7_2:86236690-86236709 None:intergenic 40.0%
! GTAACTAGATGTGTTGGTGT+CGG + chr7_2:86236965-86236984 Msa1085470:intron 40.0%
! ATTGCTAGAAGGGTTTGGTT+GGG + chr7_2:86237026-86237045 Msa1085470:intron 40.0%
TTGGCTAAGATTAGAGTCGA+TGG + chr7_2:86237063-86237082 Msa1085470:intron 40.0%
AGTTGTATGCAAGAAGTCCA+AGG - chr7_2:86237222-86237241 None:intergenic 40.0%
CTTCTTGCATACAACTCCTT+TGG + chr7_2:86237226-86237245 Msa1085470:intron 40.0%
! TGTTGTCAATTGCGGATTGT+GGG + chr7_2:86237332-86237351 Msa1085470:intron 40.0%
GTTGCATTGCGGATTTGAAA+AGG - chr7_2:86237367-86237386 None:intergenic 40.0%
GGCGCTATAACACTATTGAA+TGG - chr7_2:86237477-86237496 None:intergenic 40.0%
AACAACAATGGCTGAGTTAC+TGG + chr7_2:86237512-86237531 Msa1085470:intron 40.0%
! GCATGTTACATTGACTACAC+CGG + chr7_2:86237952-86237971 Msa1085470:three_prime_UTR 40.0%
! CATGTTACATTGACTACACC+GGG + chr7_2:86237953-86237972 Msa1085470:three_prime_UTR 40.0%
CATAAAACAGACAAACAGCC+AGG - chr7_2:86238083-86238102 None:intergenic 40.0%
! CTGGCTGTTTGTCTGTTTTA+TGG + chr7_2:86238081-86238100 Msa1085470:three_prime_UTR 40.0%
CATCGTCACAGAAGTGAAAA+TGG + chr7_2:86236521-86236540 Msa1085470:intron 40.0%
AATGGAATTCGCTGAGAATC+TGG + chr7_2:86236551-86236570 Msa1085470:CDS 40.0%
ATGAAAGGGATCGTAGATTC+AGG + chr7_2:86236598-86236617 Msa1085470:CDS 40.0%
TGAAAGGGATCGTAGATTCA+GGG + chr7_2:86236599-86236618 Msa1085470:CDS 40.0%
TCAAATGTCCAGAACCCATA+AGG - chr7_2:86236690-86236709 None:intergenic 40.0%
! GTAACTAGATGTGTTGGTGT+CGG + chr7_2:86236965-86236984 Msa1085470:intron 40.0%
! ATTGCTAGAAGGGTTTGGTT+GGG + chr7_2:86237026-86237045 Msa1085470:intron 40.0%
TTGGCTAAGATTAGAGTCGA+TGG + chr7_2:86237063-86237082 Msa1085470:intron 40.0%
AGTTGTATGCAAGAAGTCCA+AGG - chr7_2:86237222-86237241 None:intergenic 40.0%
CTTCTTGCATACAACTCCTT+TGG + chr7_2:86237226-86237245 Msa1085470:intron 40.0%
! TGTTGTCAATTGCGGATTGT+GGG + chr7_2:86237332-86237351 Msa1085470:intron 40.0%
GTTGCATTGCGGATTTGAAA+AGG - chr7_2:86237367-86237386 None:intergenic 40.0%
GGCGCTATAACACTATTGAA+TGG - chr7_2:86237477-86237496 None:intergenic 40.0%
AACAACAATGGCTGAGTTAC+TGG + chr7_2:86237512-86237531 Msa1085470:intron 40.0%
! GCATGTTACATTGACTACAC+CGG + chr7_2:86237952-86237971 Msa1085470:three_prime_UTR 40.0%
! CATGTTACATTGACTACACC+GGG + chr7_2:86237953-86237972 Msa1085470:three_prime_UTR 40.0%
CATAAAACAGACAAACAGCC+AGG - chr7_2:86238083-86238102 None:intergenic 40.0%
! CTGGCTGTTTGTCTGTTTTA+TGG + chr7_2:86238081-86238100 Msa1085470:three_prime_UTR 40.0%
GGTTGAACGAAAACTCATCG+AGG + chr7_2:86236358-86236377 Msa1085470:five_prime_UTR 45.0%
ACGAAAACTCATCGAGGAGA+AGG + chr7_2:86236364-86236383 Msa1085470:five_prime_UTR 45.0%
CTGCTGCACCGTTAAGAAAA+AGG + chr7_2:86236408-86236427 Msa1085470:five_prime_UTR 45.0%
AGTTACCCTATGCGACCTTA+TGG + chr7_2:86236672-86236691 Msa1085470:CDS 45.0%
GTTACCCTATGCGACCTTAT+GGG + chr7_2:86236673-86236692 Msa1085470:CDS 45.0%
AGAACCCATAAGGTCGCATA+GGG - chr7_2:86236680-86236699 None:intergenic 45.0%
! CCATAACTCTCAGCTTGCTT+GGG + chr7_2:86236713-86236732 Msa1085470:CDS 45.0%
! GCTCAGATTAGTCAAGTTGC+CGG + chr7_2:86236738-86236757 Msa1085470:CDS 45.0%
ATCATAAGGATCCCTACGAC+CGG - chr7_2:86236760-86236779 None:intergenic 45.0%
AAAACCTCATTTCGACGACG+AGG - chr7_2:86236805-86236824 None:intergenic 45.0%
!! GTTGGTAAGAAGCACTGACA+TGG + chr7_2:86236870-86236889 Msa1085470:intron 45.0%
GCACGTTCGATATGAAGTTC+CGG + chr7_2:86236997-86237016 Msa1085470:intron 45.0%
GCTACATTGCTAGAAGGGTT+TGG + chr7_2:86237021-86237040 Msa1085470:intron 45.0%
! CATTGCTAGAAGGGTTTGGT+TGG + chr7_2:86237025-86237044 Msa1085470:intron 45.0%
! TAGAAGGGTTTGGTTGGGAT+GGG + chr7_2:86237031-86237050 Msa1085470:intron 45.0%
!! AGGGGGAAATGTTGGTAGTA+GGG + chr7_2:86237190-86237209 Msa1085470:intron 45.0%
TTTCTCATATAGGTCCCCGA+AGG - chr7_2:86237279-86237298 None:intergenic 45.0%
! GTGTTGTCAATTGCGGATTG+TGG + chr7_2:86237331-86237350 Msa1085470:intron 45.0%
! TTGCGGATTGTGGGTAATAG+TGG + chr7_2:86237341-86237360 Msa1085470:intron 45.0%
! AAACAGCCAGGAAGCACAAT+TGG - chr7_2:86238071-86238090 None:intergenic 45.0%
GGTTGAACGAAAACTCATCG+AGG + chr7_2:86236358-86236377 Msa1085470:five_prime_UTR 45.0%
ACGAAAACTCATCGAGGAGA+AGG + chr7_2:86236364-86236383 Msa1085470:five_prime_UTR 45.0%
CTGCTGCACCGTTAAGAAAA+AGG + chr7_2:86236408-86236427 Msa1085470:five_prime_UTR 45.0%
AGTTACCCTATGCGACCTTA+TGG + chr7_2:86236672-86236691 Msa1085470:CDS 45.0%
GTTACCCTATGCGACCTTAT+GGG + chr7_2:86236673-86236692 Msa1085470:CDS 45.0%
AGAACCCATAAGGTCGCATA+GGG - chr7_2:86236680-86236699 None:intergenic 45.0%
! CCATAACTCTCAGCTTGCTT+GGG + chr7_2:86236713-86236732 Msa1085470:CDS 45.0%
! GCTCAGATTAGTCAAGTTGC+CGG + chr7_2:86236738-86236757 Msa1085470:CDS 45.0%
ATCATAAGGATCCCTACGAC+CGG - chr7_2:86236760-86236779 None:intergenic 45.0%
AAAACCTCATTTCGACGACG+AGG - chr7_2:86236805-86236824 None:intergenic 45.0%
!! GTTGGTAAGAAGCACTGACA+TGG + chr7_2:86236870-86236889 Msa1085470:intron 45.0%
GCACGTTCGATATGAAGTTC+CGG + chr7_2:86236997-86237016 Msa1085470:intron 45.0%
GCTACATTGCTAGAAGGGTT+TGG + chr7_2:86237021-86237040 Msa1085470:intron 45.0%
! CATTGCTAGAAGGGTTTGGT+TGG + chr7_2:86237025-86237044 Msa1085470:intron 45.0%
! TAGAAGGGTTTGGTTGGGAT+GGG + chr7_2:86237031-86237050 Msa1085470:intron 45.0%
!! AGGGGGAAATGTTGGTAGTA+GGG + chr7_2:86237190-86237209 Msa1085470:intron 45.0%
TTTCTCATATAGGTCCCCGA+AGG - chr7_2:86237279-86237298 None:intergenic 45.0%
! GTGTTGTCAATTGCGGATTG+TGG + chr7_2:86237331-86237350 Msa1085470:intron 45.0%
! TTGCGGATTGTGGGTAATAG+TGG + chr7_2:86237341-86237360 Msa1085470:intron 45.0%
! AAACAGCCAGGAAGCACAAT+TGG - chr7_2:86238071-86238090 None:intergenic 45.0%
!! TGCAGCAGTGTCTCTGGAAT+CGG - chr7_2:86236396-86236415 None:intergenic 50.0%
AGATAGATGCGCGAAGACGA+AGG + chr7_2:86236641-86236660 Msa1085470:CDS 50.0%
CAGAACCCATAAGGTCGCAT+AGG - chr7_2:86236681-86236700 None:intergenic 50.0%
CTATGCGACCTTATGGGTTC+TGG + chr7_2:86236679-86236698 Msa1085470:CDS 50.0%
! GCCATAACTCTCAGCTTGCT+TGG + chr7_2:86236712-86236731 Msa1085470:CDS 50.0%
CCCAAGCAAGCTGAGAGTTA+TGG - chr7_2:86236716-86236735 None:intergenic 50.0%
! TTAGTCAAGTTGCCGGTCGT+AGG + chr7_2:86236745-86236764 Msa1085470:CDS 50.0%
! TAGTCAAGTTGCCGGTCGTA+GGG + chr7_2:86236746-86236765 Msa1085470:CDS 50.0%
ACGAGGCAGGGTAATGTGAA+AGG - chr7_2:86236788-86236807 None:intergenic 50.0%
!! GATGTGTTGGTGTCGGACAT+TGG + chr7_2:86236972-86236991 Msa1085470:intron 50.0%
!! TCCGGTGCTACATTGCTAGA+AGG + chr7_2:86237015-86237034 Msa1085470:intron 50.0%
CCCTTCTAGCAATGTAGCAC+CGG - chr7_2:86237019-86237038 None:intergenic 50.0%
!! CCGGTGCTACATTGCTAGAA+GGG + chr7_2:86237016-86237035 Msa1085470:intron 50.0%
! CTAGAAGGGTTTGGTTGGGA+TGG + chr7_2:86237030-86237049 Msa1085470:intron 50.0%
GTTTGGTTGGGATGGGATTG+TGG + chr7_2:86237038-86237057 Msa1085470:intron 50.0%
TTGGGATGGGATTGTGGACT+TGG + chr7_2:86237044-86237063 Msa1085470:intron 50.0%
TTAGAGGGAGGGGGAAATGT+TGG + chr7_2:86237182-86237201 Msa1085470:intron 50.0%
!! GAGGGGGAAATGTTGGTAGT+AGG + chr7_2:86237189-86237208 Msa1085470:intron 50.0%
!! GGGGGAAATGTTGGTAGTAG+GGG + chr7_2:86237191-86237210 Msa1085470:intron 50.0%
TGGTAGTAGGGGTTGAACCT+TGG + chr7_2:86237202-86237221 Msa1085470:intron 50.0%
AAACCACCGAGCTACTCCTT+CGG + chr7_2:86237260-86237279 Msa1085470:intron 50.0%
GCTACAGCACTGTTGCATTG+CGG - chr7_2:86237378-86237397 None:intergenic 50.0%
TAGTGGCCAATTGTGCTTCC+TGG + chr7_2:86238062-86238081 Msa1085470:three_prime_UTR 50.0%
!! TGCAGCAGTGTCTCTGGAAT+CGG - chr7_2:86236396-86236415 None:intergenic 50.0%
AGATAGATGCGCGAAGACGA+AGG + chr7_2:86236641-86236660 Msa1085470:CDS 50.0%
CAGAACCCATAAGGTCGCAT+AGG - chr7_2:86236681-86236700 None:intergenic 50.0%
CTATGCGACCTTATGGGTTC+TGG + chr7_2:86236679-86236698 Msa1085470:CDS 50.0%
! GCCATAACTCTCAGCTTGCT+TGG + chr7_2:86236712-86236731 Msa1085470:CDS 50.0%
CCCAAGCAAGCTGAGAGTTA+TGG - chr7_2:86236716-86236735 None:intergenic 50.0%
! TTAGTCAAGTTGCCGGTCGT+AGG + chr7_2:86236745-86236764 Msa1085470:CDS 50.0%
! TAGTCAAGTTGCCGGTCGTA+GGG + chr7_2:86236746-86236765 Msa1085470:CDS 50.0%
ACGAGGCAGGGTAATGTGAA+AGG - chr7_2:86236788-86236807 None:intergenic 50.0%
!! GATGTGTTGGTGTCGGACAT+TGG + chr7_2:86236972-86236991 Msa1085470:intron 50.0%
!! TCCGGTGCTACATTGCTAGA+AGG + chr7_2:86237015-86237034 Msa1085470:intron 50.0%
CCCTTCTAGCAATGTAGCAC+CGG - chr7_2:86237019-86237038 None:intergenic 50.0%
!! CCGGTGCTACATTGCTAGAA+GGG + chr7_2:86237016-86237035 Msa1085470:intron 50.0%
! CTAGAAGGGTTTGGTTGGGA+TGG + chr7_2:86237030-86237049 Msa1085470:intron 50.0%
GTTTGGTTGGGATGGGATTG+TGG + chr7_2:86237038-86237057 Msa1085470:intron 50.0%
TTGGGATGGGATTGTGGACT+TGG + chr7_2:86237044-86237063 Msa1085470:intron 50.0%
TTAGAGGGAGGGGGAAATGT+TGG + chr7_2:86237182-86237201 Msa1085470:intron 50.0%
!! GAGGGGGAAATGTTGGTAGT+AGG + chr7_2:86237189-86237208 Msa1085470:intron 50.0%
!! GGGGGAAATGTTGGTAGTAG+GGG + chr7_2:86237191-86237210 Msa1085470:intron 50.0%
TGGTAGTAGGGGTTGAACCT+TGG + chr7_2:86237202-86237221 Msa1085470:intron 50.0%
AAACCACCGAGCTACTCCTT+CGG + chr7_2:86237260-86237279 Msa1085470:intron 50.0%
GCTACAGCACTGTTGCATTG+CGG - chr7_2:86237378-86237397 None:intergenic 50.0%
TAGTGGCCAATTGTGCTTCC+TGG + chr7_2:86238062-86238081 Msa1085470:three_prime_UTR 50.0%
TAACGGTGCAGCAGTGTCTC+TGG - chr7_2:86236402-86236421 None:intergenic 55.0%
CTCATTTCGACGACGAGGCA+GGG - chr7_2:86236800-86236819 None:intergenic 55.0%
!! GGTTTGGCTTGGGACACCAA+AGG - chr7_2:86237245-86237264 None:intergenic 55.0%
! GTAGCTCGGTGGTTTGGCTT+GGG - chr7_2:86237255-86237274 None:intergenic 55.0%
! AGTAGCTCGGTGGTTTGGCT+TGG - chr7_2:86237256-86237275 None:intergenic 55.0%
! GAAGGAGTAGCTCGGTGGTT+TGG - chr7_2:86237261-86237280 None:intergenic 55.0%
AACCACCGAGCTACTCCTTC+GGG + chr7_2:86237261-86237280 Msa1085470:intron 55.0%
TAACGGTGCAGCAGTGTCTC+TGG - chr7_2:86236402-86236421 None:intergenic 55.0%
CTCATTTCGACGACGAGGCA+GGG - chr7_2:86236800-86236819 None:intergenic 55.0%
!! GGTTTGGCTTGGGACACCAA+AGG - chr7_2:86237245-86237264 None:intergenic 55.0%
! GTAGCTCGGTGGTTTGGCTT+GGG - chr7_2:86237255-86237274 None:intergenic 55.0%
! AGTAGCTCGGTGGTTTGGCT+TGG - chr7_2:86237256-86237275 None:intergenic 55.0%
! GAAGGAGTAGCTCGGTGGTT+TGG - chr7_2:86237261-86237280 None:intergenic 55.0%
AACCACCGAGCTACTCCTTC+GGG + chr7_2:86237261-86237280 Msa1085470:intron 55.0%
GCGCGAAGACGAAGGAGATG+TGG + chr7_2:86236649-86236668 Msa1085470:CDS 60.0%
CCTCATTTCGACGACGAGGC+AGG - chr7_2:86236801-86236820 None:intergenic 60.0%
CCTGCCTCGTCGTCGAAATG+AGG + chr7_2:86236798-86236817 Msa1085470:CDS 60.0%
ACCACCGAGCTACTCCTTCG+GGG + chr7_2:86237262-86237281 Msa1085470:intron 60.0%
AGGTCCCCGAAGGAGTAGCT+CGG - chr7_2:86237269-86237288 None:intergenic 60.0%
GCGCGAAGACGAAGGAGATG+TGG + chr7_2:86236649-86236668 Msa1085470:CDS 60.0%
CCTCATTTCGACGACGAGGC+AGG - chr7_2:86236801-86236820 None:intergenic 60.0%
CCTGCCTCGTCGTCGAAATG+AGG + chr7_2:86236798-86236817 Msa1085470:CDS 60.0%
ACCACCGAGCTACTCCTTCG+GGG + chr7_2:86237262-86237281 Msa1085470:intron 60.0%
AGGTCCCCGAAGGAGTAGCT+CGG - chr7_2:86237269-86237288 None:intergenic 60.0%
TCCCCGAAGGAGTAGCTCGG+TGG - chr7_2:86237266-86237285 None:intergenic 65.0%
TCCCCGAAGGAGTAGCTCGG+TGG - chr7_2:86237266-86237285 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 86236342 86238208 86236342 ID=Msa1085470;Name=Msa1085470
chr7_2 mRNA 86236342 86238208 86236342 ID=Msa1085470-mRNA-1;Parent=Msa1085470;Name=Msa1085470-mRNA-1;_AED=0.00;_eAED=0.00;_QI=96|0.5|0.66|1|0|0.33|3|364|92
chr7_2 exon 86236342 86236429 86236342 ID=Msa1085470-mRNA-1:exon:23317;Parent=Msa1085470-mRNA-1
chr7_2 exon 86236532 86236818 86236532 ID=Msa1085470-mRNA-1:exon:23318;Parent=Msa1085470-mRNA-1
chr7_2 exon 86237845 86238208 86237845 ID=Msa1085470-mRNA-1:exon:23319;Parent=Msa1085470-mRNA-1
chr7_2 five_prime_UTR 86236342 86236429 86236342 ID=Msa1085470-mRNA-1:five_prime_utr;Parent=Msa1085470-mRNA-1
chr7_2 five_prime_UTR 86236532 86236539 86236532 ID=Msa1085470-mRNA-1:five_prime_utr;Parent=Msa1085470-mRNA-1
chr7_2 CDS 86236540 86236818 86236540 ID=Msa1085470-mRNA-1:cds;Parent=Msa1085470-mRNA-1
chr7_2 three_prime_UTR 86237845 86238208 86237845 ID=Msa1085470-mRNA-1:three_prime_utr;Parent=Msa1085470-mRNA-1
Gene Sequence

>Msa1085470

ATGGCTTTCATAATGGAATTCGCTGAGAATCTGGTTCTGAAATTGATGGAAGATCCAAATGAAAGGGATCGTAGATTCAGGGAACATGTGTATAAGACGAAAGATAGATGCGCGAAGACGAAGGAGATGTGGAGTTACCCTATGCGACCTTATGGGTTCTGGACATTTGAACGCCATAACTCTCAGCTTGCTTGGGATGCTCAGATTAGTCAAGTTGCCGGTCGTAGGGATCCTTATGATGAAATCCTTTCACATTACCCTGCCTCGTCGTCGAAATGA

Protein sequence

>Msa1085470

MAFIMEFAENLVLKLMEDPNERDRRFREHVYKTKDRCAKTKEMWSYPMRPYGFWTFERHNSQLAWDAQISQVAGRRDPYDEILSHYPASSSK*