AlfalfaGEDB | Msa0580280

M. sativa cultivar zhongmu-4 / Msa0580280

KEGG: K07977
GO: -
PFAM: PF00025.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580280	XP_003607403.1	99.487	195	1	0	1	195	1	195	2.41e-140	399

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580280	sp\|P61210\|ARF1_LOCMI	63.483	178	65	0	1	178	1	178	9.58e-84	248

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580280	G7JRR7	99.487	195	1	0	1	195	1	195	1.15e-140	399

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0580280	0.834062	3.725049e-56	-8.615850e-47
Msa0008090	Msa0580280	0.824729	6.893597e-54	-8.615850e-47
Msa0020390	Msa0580280	0.848753	5.014351e-60	-8.615850e-47
Msa0029260	Msa0580280	0.850120	2.085657e-60	-8.615850e-47
Msa0029630	Msa0580280	0.810648	1.038214e-50	-8.615850e-47
Msa0033880	Msa0580280	0.848791	4.893661e-60	-8.615850e-47
Msa0043860	Msa0580280	0.850716	1.418810e-60	-8.615850e-47
Msa0046740	Msa0580280	0.835390	1.725291e-56	-8.615850e-47
Msa0048180	Msa0580280	0.815665	8.230599e-52	-8.615850e-47
Msa0055100	Msa0580280	0.816651	4.955241e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580280	MtrunA17_Chr4g0039591	99.487	195	1	0	1	195	1	195	2.22e-144	399
Msa0580280	MtrunA17_Chr5g0395631	88.718	195	17	1	1	195	1	190	2.24e-128	358
Msa0580280	MtrunA17_Chr5g0395641	77.660	188	40	1	1	186	1	188	1.07e-106	304
Msa0580280	MtrunA17_Chr7g0270301	61.017	177	69	0	1	177	1	177	1.23e-81	240
Msa0580280	MtrunA17_Chr1g0194261	61.017	177	69	0	1	177	1	177	1.58e-81	239
Msa0580280	MtrunA17_Chr6g0450081	61.017	177	69	0	1	177	1	177	2.27e-81	239
Msa0580280	MtrunA17_Chr5g0413451	61.017	177	69	0	1	177	1	177	2.89e-81	239
Msa0580280	MtrunA17_Chr5g0413441	61.017	177	69	0	1	177	1	177	2.89e-81	239
Msa0580280	MtrunA17_Chr5g0401761	58.757	177	73	0	1	177	1	177	5.21e-78	231
Msa0580280	MtrunA17_Chr4g0072861	56.742	178	77	0	1	178	1	178	2.77e-71	214

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0580280	AT3G03120.1	91.534	189	16	1	189	1	189	3.24e-130	363
Msa0580280	AT5G17060.2	90.476	189	18	1	189	1	189	3.86e-130	363
Msa0580280	AT5G17060.1	90.476	189	18	1	189	1	189	3.86e-130	363
Msa0580280	AT3G03120.2	93.846	130	8	1	130	1	130	1.72e-87	253
Msa0580280	AT1G10630.1	61.017	177	69	1	177	1	177	1.66e-81	240
Msa0580280	AT1G10630.2	61.017	177	69	1	177	1	177	1.66e-81	240
Msa0580280	AT1G23490.1	61.017	177	69	1	177	1	177	2.44e-81	239
Msa0580280	AT1G70490.2	61.017	177	69	1	177	1	177	2.44e-81	239
Msa0580280	AT1G70490.7	61.017	177	69	1	177	1	177	2.44e-81	239
Msa0580280	AT1G70490.4	61.017	177	69	1	177	1	177	2.44e-81	239

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Find 95 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTTCGATTCCTTCTT+CGG	0.364291	4_1:-85328782	Msa0580280:CDS
AAAGTGTCCTCAATTTCTCT+TGG	0.449055	4_1:+85327551	None:intergenic
AAAGTTGATTACCCGCATCT+CGG	0.580109	4_1:+85328754	None:intergenic
AAATAAAACCCACCAATTGT+AGG	0.427108	4_1:+85328060	None:intergenic
AACATTCACAAAGTGTAAGA+TGG	0.480467	4_1:+85325186	None:intergenic
AAGAAACGCAACAGGGAAGA+AGG	0.506824	4_1:-85328882	Msa0580280:five_prime_UTR
AAGAGAAATTGAGGACACTT+TGG	0.498427	4_1:-85327549	Msa0580280:CDS
AAGGGTGATGGCCTTTATGA+GGG	0.543901	4_1:-85325675	Msa0580280:CDS
AAGTGACAGTTATATTATTG+TGG	0.567461	4_1:+85325019	None:intergenic
AATAGAAAATGGCACATACA+AGG	0.575931	4_1:-85325711	Msa0580280:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAGCAATAATTCGATTATGT+CGG	-	chr4_1:85325631-85325650	Msa0580280:CDS	30.0%
AGCAATAATTCGATTATGTC+GGG	-	chr4_1:85325632-85325651	Msa0580280:CDS	30.0%
ATATTGTACAAGCTTCACAT+TGG	-	chr4_1:85325841-85325860	Msa0580280:intron	30.0%
TTATCTACTGTTCCTACAAT+TGG	-	chr4_1:85325871-85325890	Msa0580280:intron	30.0%
AAATAAAACCCACCAATTGT+AGG	+	chr4_1:85325886-85325905	None:intergenic	30.0%
TGTTTAAATATGCTTGTGAG+CGG	-	chr4_1:85326070-85326089	Msa0580280:intron	30.0%
TTTGCAATACAATTACAGAG+GGG	+	chr4_1:85326177-85326196	None:intergenic	30.0%
TGTATTGCAAATATATGTGG+TGG	-	chr4_1:85326186-85326205	Msa0580280:intron	30.0%
GTATTGCAAATATATGTGGT+GGG	-	chr4_1:85326187-85326206	Msa0580280:intron	30.0%
TATAAGTTTGTATGCATTGC+AGG	-	chr4_1:85326309-85326328	Msa0580280:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	85324997	85328968	85324997	ID=Msa0580280;Name=Msa0580280
chr4_1	mRNA	85324997	85328968	85324997	ID=Msa0580280-mRNA-1;Parent=Msa0580280;Name=Msa0580280-mRNA-1;_AED=0.08;_eAED=0.08;_QI=146\|1\|1\|1\|0.83\|0.71\|7\|508\|195
chr4_1	exon	85324997	85325496	85324997	ID=Msa0580280-mRNA-1:exon:31329;Parent=Msa0580280-mRNA-1
chr4_1	exon	85325585	85325790	85325585	ID=Msa0580280-mRNA-1:exon:31328;Parent=Msa0580280-mRNA-1
chr4_1	exon	85327126	85327191	85327126	ID=Msa0580280-mRNA-1:exon:31327;Parent=Msa0580280-mRNA-1
chr4_1	exon	85327285	85327344	85327285	ID=Msa0580280-mRNA-1:exon:31326;Parent=Msa0580280-mRNA-1
chr4_1	exon	85327519	85327634	85327519	ID=Msa0580280-mRNA-1:exon:31325;Parent=Msa0580280-mRNA-1
chr4_1	exon	85328073	85328163	85328073	ID=Msa0580280-mRNA-1:exon:31324;Parent=Msa0580280-mRNA-1
chr4_1	exon	85328766	85328968	85328766	ID=Msa0580280-mRNA-1:exon:31323;Parent=Msa0580280-mRNA-1
chr4_1	five_prime_UTR	85328823	85328968	85328823	ID=Msa0580280-mRNA-1:five_prime_utr;Parent=Msa0580280-mRNA-1
chr4_1	CDS	85328766	85328822	85328766	ID=Msa0580280-mRNA-1:cds;Parent=Msa0580280-mRNA-1
chr4_1	CDS	85328073	85328163	85328073	ID=Msa0580280-mRNA-1:cds;Parent=Msa0580280-mRNA-1
chr4_1	CDS	85327519	85327634	85327519	ID=Msa0580280-mRNA-1:cds;Parent=Msa0580280-mRNA-1
chr4_1	CDS	85327285	85327344	85327285	ID=Msa0580280-mRNA-1:cds;Parent=Msa0580280-mRNA-1
chr4_1	CDS	85327126	85327191	85327126	ID=Msa0580280-mRNA-1:cds;Parent=Msa0580280-mRNA-1
chr4_1	CDS	85325593	85325790	85325593	ID=Msa0580280-mRNA-1:cds;Parent=Msa0580280-mRNA-1
chr4_1	three_prime_UTR	85325585	85325592	85325585	ID=Msa0580280-mRNA-1:three_prime_utr;Parent=Msa0580280-mRNA-1
chr4_1	three_prime_UTR	85324997	85325496	85324997	ID=Msa0580280-mRNA-1:three_prime_utr;Parent=Msa0580280-mRNA-1

Gene Sequence

>Msa0580280

ATGGGTCAAGCTTTTCGCAAACTCTTCGATTCCTTCTTCGGCAATACCGAGATGCGGGTTGTCATGCTTGGTCTTGATGCTGCTGGAAAAACAACTATATTGTACAAGCTTCACATTGGAGAAGTTTTATCTACTGTTCCTACAATTGGTTTCAACGTAGAGAAAGTTCAGTATAAGAATGTTATTTTCACGGTTTGGGATGTTGGAGGCCAAGAGAAATTGAGGACACTTTGGAGGCACTATTTTAACAACACAGATGGTTTGATATATGTTGTTGATAGTCTGGACCGTGAGAGAATTGGGAAAGCAAAGCAGGAATTTCAGACAATCATAAATGACCCGTTTATGCTCAACAGTGTCATCTTGGTACTTGCCAACAAACAAGACCTGAGAGGAGCGATGACGGCAAGGGAAGTGTGTGACGGATTAGGTCTCTTTGATCTAAAGAATAGAAAATGGCACATACAAGGCACCTGTGCACTTAAGGGTGATGGCCTTTATGAGGGTTTGGACTGGTTGTCCTCAACACTGAAGGAGATGAAGGCTGCTGGATACTCTTCATTAGGACTAGGAACTTCATCCTTCTAA

Protein sequence

>Msa0580280

MGQAFRKLFDSFFGNTEMRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRTLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQTIINDPFMLNSVILVLANKQDLRGAMTAREVCDGLGLFDLKNRKWHIQGTCALKGDGLYEGLDWLSSTLKEMKAAGYSSLGLGTSSF*