AlfalfaGEDB | Msa0648940

M. sativa cultivar zhongmu-4 / Msa0648940

KEGG: K02726
GO: GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005840 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0010035 GO:0010038 GO:0010043 GO:0019773 GO:0022626 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1902494 GO:1905368 GO:1905369 GO:1990904
PFAM: PF10584.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0648940	XP_013442471.1	94.979	239	8	1	1	239	1	235	1.55e-161	456

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0648940	sp\|O23708\|PSA2A_ARATH	89.540	239	21	1	1	239	1	235	4.35e-155	432

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0111330	Msa0648940	0.805797	1.122531e-49	-8.615850e-47
Msa0259160	Msa0648940	0.806225	9.122795e-50	-8.615850e-47
Msa0262480	Msa0648940	0.802852	4.609531e-49	-8.615850e-47
Msa0648940	Msa0707390	0.820023	8.537777e-53	-8.615850e-47
Msa0648940	Msa0905990	0.804274	2.337477e-49	-8.615850e-47
Msa0648940	Msa0947530	-0.800896	1.162480e-48	-8.615850e-47
Msa0648940	Msa0979810	0.815467	9.108511e-52	-8.615850e-47
Msa0648940	Msa1166870	0.800773	1.231710e-48	-8.615850e-47
Msa0648940	Msa1201830	0.801273	9.733148e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0648940	MtrunA17_Chr0c02g0489661	94.979	239	8	1	1	239	1	235	1.43e-165	456
Msa0648940	MtrunA17_Chr2g0308541	39.149	235	134	5	6	235	9	239	2.07e-50	164
Msa0648940	MtrunA17_Chr8g0371571	38.627	233	130	5	4	232	2	225	1.04e-48	160
Msa0648940	MtrunA17_Chr8g0360781	37.447	235	138	5	6	235	9	239	2.03e-44	149
Msa0648940	MtrunA17_Chr7g0243311	35.714	238	142	5	5	235	4	237	3.67e-44	149
Msa0648940	MtrunA17_Chr2g0283841	36.797	231	137	4	4	232	2	225	8.52e-43	145
Msa0648940	MtrunA17_Chr1g0210811	35.043	234	139	4	4	232	6	231	1.31e-42	144
Msa0648940	MtrunA17_Chr5g0401801	39.896	193	110	3	5	195	4	192	4.69e-42	142
Msa0648940	MtrunA17_Chr1g0155371	33.624	229	143	4	1	226	1	223	1.50e-36	130
Msa0648940	MtrunA17_Chr6g0459741	35.359	181	113	1	6	186	8	184	2.73e-35	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0648940	AT1G16470.1	89.540	239	21	1	1	239	1	235	4.42e-156	432
Msa0648940	AT1G16470.2	89.540	239	21	1	1	239	1	235	4.42e-156	432
Msa0648940	AT1G79210.1	88.703	239	23	1	1	239	1	235	5.51e-155	430
Msa0648940	AT1G79210.2	88.703	239	23	1	1	239	1	235	5.51e-155	430
Msa0648940	AT1G79210.3	88.703	239	23	1	1	239	1	235	5.51e-155	430
Msa0648940	AT5G66140.1	38.889	234	129	6	4	232	2	226	3.84e-47	157
Msa0648940	AT3G51260.1	38.462	234	130	6	4	232	2	226	1.07e-45	153
Msa0648940	AT3G51260.2	39.450	218	119	5	4	217	2	210	1.41e-45	152
Msa0648940	AT5G35590.1	36.596	235	140	5	6	235	9	239	8.95e-45	150
Msa0648940	AT1G53850.1	35.043	234	139	4	4	232	6	231	1.50e-42	144

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Find 78 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATAAATAGAATAGAAAGA+AGG	0.500812	4_3:+55542919	None:intergenic
AAATAATCATCAATTTCAGC+TGG	0.537679	4_3:+55537233	None:intergenic
AACATTGAAATCGGCATCAT+TGG	0.369450	4_3:-55538577	Msa0648940:CDS
AATAAATAGAATAGAAAGAA+GGG	0.475660	4_3:+55542920	None:intergenic
AATAAATTAGTGTTTATTAA+AGG	0.210676	4_3:+55536957	None:intergenic
ACAAGATGCTAAGATAATTC+AGG	0.365742	4_3:+55536861	None:intergenic
ACAAGCAGAGACACTCCAAA+TGG	0.574302	4_3:+55539821	None:intergenic
ACAAGTTGAGTGACAGGGAT+TGG	0.462122	4_3:+55540662	None:intergenic
ACACCAACTTCGGGAACATA+AGG	0.445040	4_3:+55537174	None:intergenic
AGCTGAAATTGATGATTATT+TGG	0.158426	4_3:-55537231	Msa0648940:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTTCAAATTCGATTGTGT+TGG	+	chr4_3:55536955-55536974	None:intergenic	30.0%
CAATGACATGAATTGAAAAG+AGG	+	chr4_3:55537162-55537181	None:intergenic	30.0%
AGCCATAAACTCTAAATTGA+TGG	+	chr4_3:55537282-55537301	None:intergenic	30.0%
TTATATGAAAAGGGCAATGT+TGG	-	chr4_3:55537334-55537353	Msa0648940:intron	30.0%
TGAACTTGGAATTGTAATTC+TGG	+	chr4_3:55537395-55537414	None:intergenic	30.0%
GAAGAAACTTCCATCTATAT+TGG	-	chr4_3:55537634-55537653	Msa0648940:intron	30.0%
CAGTTATTAACACCAAACAT+AGG	-	chr4_3:55537778-55537797	Msa0648940:intron	30.0%
TAACAGAGAATTCTATCCAA+AGG	-	chr4_3:55538034-55538053	Msa0648940:intron	30.0%
ACGGTTATGATGTTATCATA+GGG	+	chr4_3:55538126-55538145	None:intergenic	30.0%
AACGGTTATGATGTTATCAT+AGG	+	chr4_3:55538127-55538146	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	55536873	55542972	55536873	ID=Msa0648940;Name=Msa0648940
chr4_3	mRNA	55536873	55542972	55536873	ID=Msa0648940-mRNA-1;Parent=Msa0648940;Name=Msa0648940-mRNA-1;_AED=0.10;_eAED=0.10;_QI=262\|0.9\|0.90\|1\|0.8\|0.72\|11\|310\|239
chr4_3	exon	55536873	55537007	55536873	ID=Msa0648940-mRNA-1:exon:14238;Parent=Msa0648940-mRNA-1
chr4_3	exon	55537042	55537265	55537042	ID=Msa0648940-mRNA-1:exon:14237;Parent=Msa0648940-mRNA-1
chr4_3	exon	55538559	55538624	55538559	ID=Msa0648940-mRNA-1:exon:14236;Parent=Msa0648940-mRNA-1
chr4_3	exon	55539164	55539226	55539164	ID=Msa0648940-mRNA-1:exon:14235;Parent=Msa0648940-mRNA-1
chr4_3	exon	55539443	55539528	55539443	ID=Msa0648940-mRNA-1:exon:14234;Parent=Msa0648940-mRNA-1
chr4_3	exon	55539784	55539853	55539784	ID=Msa0648940-mRNA-1:exon:14233;Parent=Msa0648940-mRNA-1
chr4_3	exon	55540620	55540718	55540620	ID=Msa0648940-mRNA-1:exon:14232;Parent=Msa0648940-mRNA-1
chr4_3	exon	55541084	55541140	55541084	ID=Msa0648940-mRNA-1:exon:14231;Parent=Msa0648940-mRNA-1
chr4_3	exon	55542033	55542079	55542033	ID=Msa0648940-mRNA-1:exon:14230;Parent=Msa0648940-mRNA-1
chr4_3	exon	55542175	55542364	55542175	ID=Msa0648940-mRNA-1:exon:14229;Parent=Msa0648940-mRNA-1
chr4_3	exon	55542718	55542972	55542718	ID=Msa0648940-mRNA-1:exon:14228;Parent=Msa0648940-mRNA-1
chr4_3	five_prime_UTR	55542718	55542972	55542718	ID=Msa0648940-mRNA-1:five_prime_utr;Parent=Msa0648940-mRNA-1
chr4_3	five_prime_UTR	55542358	55542364	55542358	ID=Msa0648940-mRNA-1:five_prime_utr;Parent=Msa0648940-mRNA-1
chr4_3	CDS	55542175	55542357	55542175	ID=Msa0648940-mRNA-1:cds;Parent=Msa0648940-mRNA-1
chr4_3	CDS	55542033	55542079	55542033	ID=Msa0648940-mRNA-1:cds;Parent=Msa0648940-mRNA-1
chr4_3	CDS	55541084	55541140	55541084	ID=Msa0648940-mRNA-1:cds;Parent=Msa0648940-mRNA-1
chr4_3	CDS	55540620	55540718	55540620	ID=Msa0648940-mRNA-1:cds;Parent=Msa0648940-mRNA-1
chr4_3	CDS	55539784	55539853	55539784	ID=Msa0648940-mRNA-1:cds;Parent=Msa0648940-mRNA-1
chr4_3	CDS	55539443	55539528	55539443	ID=Msa0648940-mRNA-1:cds;Parent=Msa0648940-mRNA-1
chr4_3	CDS	55539164	55539226	55539164	ID=Msa0648940-mRNA-1:cds;Parent=Msa0648940-mRNA-1
chr4_3	CDS	55538559	55538624	55538559	ID=Msa0648940-mRNA-1:cds;Parent=Msa0648940-mRNA-1
chr4_3	CDS	55537217	55537265	55537217	ID=Msa0648940-mRNA-1:cds;Parent=Msa0648940-mRNA-1
chr4_3	three_prime_UTR	55537042	55537216	55537042	ID=Msa0648940-mRNA-1:three_prime_utr;Parent=Msa0648940-mRNA-1
chr4_3	three_prime_UTR	55536873	55537007	55536873	ID=Msa0648940-mRNA-1:three_prime_utr;Parent=Msa0648940-mRNA-1

Gene Sequence

>Msa0648940

ATGGGAGATAGTCAATACTCGTTTTCTCTTACAACTTTTAGTCCTTCTGGTAAGCTTGTTCAAATTGAGCATGCTTTAACCGCTGTTGGTTCTGGACAAACTTCTCTCGGTATCAAAGCTGCAAATGGAGTTGTCATTGCAACAGAGAAGAAACTTCCATCTATATTGGTTGATCAAGCATCAGTCCAGAAAATTCAGTTATTAACACCAAACATAGGTGTTGTATACAGTGGCATGGGTCCTGATTTCCGAGTATTGGTTCGAAAAAGCAGAAAACAGGCTGAGCAGCTATCTGATATTGTAAGCAAAAAATTGCAGGAACCAATCCCTGTCACTCAACTTGTAAGGGAAGTTGCTGCCGTTATGCAGGAATTTACTCAGTCTGGTGGTGTCCGGCCATTTGGAGTGTCTCTGCTTGTTGCTGGGTTTGATGATAATGGACCACAATTATATCAGGTGGATCCATCAGGTTCATATTTTTCTTGGAAAGCTTCTGCTATGGGGAAGAATGTTTCTAATGCTAAGACATTTCTTGAGAAGAGGTGCACCGATGATATGGAGCTTGATGATGCAGTCCACACAGCAATATTGACACTCAAGGAAGGGTTTGAGGGACAGATCTCAGCAAAAAACATTGAAATCGGCATCATTGGTGCAGACAAAAAGTTCAGGGTATTGACACCAGCTGAAATTGATGATTATTTGGGTGAAGTAGAATAA

Protein sequence

>Msa0648940

MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDQASVQKIQLLTPNIGVVYSGMGPDFRVLVRKSRKQAEQLSDIVSKKLQEPIPVTQLVREVAAVMQEFTQSGGVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRCTDDMELDDAVHTAILTLKEGFEGQISAKNIEIGIIGADKKFRVLTPAEIDDYLGEVE*