Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111330 | G7I2P6 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 1.03e-79 | 239 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0111330 | 0.829099 | 6.222086e-55 | -8.615850e-47 |
| Msa0026660 | Msa0111330 | 0.803655 | 3.142697e-49 | -8.615850e-47 |
| Msa0027580 | Msa0111330 | 0.801777 | 7.673587e-49 | -8.615850e-47 |
| Msa0031510 | Msa0111330 | 0.820772 | 5.747887e-53 | -8.615850e-47 |
| Msa0055150 | Msa0111330 | 0.822675 | 2.086652e-53 | -8.615850e-47 |
| Msa0061970 | Msa0111330 | 0.820956 | 5.213298e-53 | -8.615850e-47 |
| Msa0075340 | Msa0111330 | 0.802991 | 4.314253e-49 | -8.615850e-47 |
| Msa0101180 | Msa0111330 | 0.824417 | 8.162659e-54 | -8.615850e-47 |
| Msa0111330 | Msa0126520 | 0.804316 | 2.289918e-49 | -8.615850e-47 |
| Msa0111330 | Msa0126770 | 0.802203 | 6.272164e-49 | -8.615850e-47 |
| Msa0111330 | Msa0126840 | 0.841648 | 4.183091e-58 | -8.615850e-47 |
| Msa0111330 | Msa0152840 | 0.833428 | 5.363964e-56 | -8.615850e-47 |
| Msa0111330 | Msa0166750 | 0.836600 | 8.509864e-57 | -8.615850e-47 |
| Msa0111330 | Msa0167480 | 0.861180 | 1.229808e-63 | -8.615850e-47 |
| Msa0111330 | Msa0171850 | 0.816021 | 6.855371e-52 | -8.615850e-47 |
| Msa0111330 | Msa0171940 | 0.819314 | 1.239667e-52 | -8.615850e-47 |
| Msa0111330 | Msa0175200 | 0.810969 | 8.849611e-51 | -8.615850e-47 |
| Msa0111330 | Msa0183460 | 0.808169 | 3.534921e-50 | -8.615850e-47 |
| Msa0111330 | Msa0193600 | 0.816476 | 5.423388e-52 | -8.615850e-47 |
| Msa0111330 | Msa0199690 | 0.809085 | 2.251883e-50 | -8.615850e-47 |
| Msa0111330 | Msa0219250 | -0.820015 | 8.575318e-53 | -8.615850e-47 |
| Msa0111330 | Msa0226330 | 0.825095 | 5.651057e-54 | -8.615850e-47 |
| Msa0111330 | Msa0226460 | 0.847415 | 1.173672e-59 | -8.615850e-47 |
| Msa0111330 | Msa0231100 | 0.810800 | 9.627101e-51 | -8.615850e-47 |
| Msa0111330 | Msa0236270 | 0.825609 | 4.270739e-54 | -8.615850e-47 |
| Msa0111330 | Msa0258880 | -0.815819 | 7.604003e-52 | -8.615850e-47 |
| Msa0111330 | Msa0262480 | 0.828767 | 7.486719e-55 | -8.615850e-47 |
| Msa0111330 | Msa0273650 | 0.810496 | 1.119894e-50 | -8.615850e-47 |
| Msa0111330 | Msa0280430 | 0.823933 | 1.060578e-53 | -8.615850e-47 |
| Msa0111330 | Msa0291520 | 0.841625 | 4.241130e-58 | -8.615850e-47 |
| Msa0111330 | Msa0296920 | 0.824917 | 6.225884e-54 | -8.615850e-47 |
| Msa0111330 | Msa0300350 | 0.840531 | 8.221364e-58 | -8.615850e-47 |
| Msa0111330 | Msa0304590 | 0.829475 | 5.040878e-55 | -8.615850e-47 |
| Msa0111330 | Msa0304660 | 0.840109 | 1.060006e-57 | -8.615850e-47 |
| Msa0111330 | Msa0331700 | 0.839317 | 1.703485e-57 | -8.615850e-47 |
| Msa0111330 | Msa0337510 | 0.816615 | 5.046440e-52 | -8.615850e-47 |
| Msa0111330 | Msa0347680 | 0.825280 | 5.109231e-54 | -8.615850e-47 |
| Msa0111330 | Msa0364990 | 0.808952 | 2.404430e-50 | -8.615850e-47 |
| Msa0111330 | Msa0365860 | 0.801596 | 8.355151e-49 | -8.615850e-47 |
| Msa0111330 | Msa0370160 | -0.804177 | 2.448129e-49 | -8.615850e-47 |
| Msa0111330 | Msa0376690 | 0.803127 | 4.043421e-49 | -8.615850e-47 |
| Msa0111330 | Msa0379080 | 0.800006 | 1.764106e-48 | -8.615850e-47 |
| Msa0111330 | Msa0384880 | 0.804151 | 2.479386e-49 | -8.615850e-47 |
| Msa0111330 | Msa0394400 | 0.824172 | 9.319200e-54 | -8.615850e-47 |
| Msa0111330 | Msa0414020 | 0.807628 | 4.607402e-50 | -8.615850e-47 |
| Msa0111330 | Msa0416400 | 0.819759 | 9.812239e-53 | -8.615850e-47 |
| Msa0111330 | Msa0419520 | 0.801422 | 9.070841e-49 | -8.615850e-47 |
| Msa0111330 | Msa0431770 | 0.808555 | 2.923329e-50 | -8.615850e-47 |
| Msa0111330 | Msa0436200 | 0.825590 | 4.315044e-54 | -8.615850e-47 |
| Msa0111330 | Msa0437690 | -0.814842 | 1.253967e-51 | -8.615850e-47 |
| Msa0111330 | Msa0443390 | 0.831991 | 1.219671e-55 | -8.615850e-47 |
| Msa0111330 | Msa0453230 | 0.803625 | 3.187929e-49 | -8.615850e-47 |
| Msa0111330 | Msa0458060 | 0.824706 | 6.979967e-54 | -8.615850e-47 |
| Msa0111330 | Msa0458640 | 0.815399 | 9.430726e-52 | -8.615850e-47 |
| Msa0111330 | Msa0471590 | 0.822730 | 2.025542e-53 | -8.615850e-47 |
| Msa0111330 | Msa0484290 | 0.823237 | 1.543096e-53 | -8.615850e-47 |
| Msa0111330 | Msa0505150 | 0.818545 | 1.854022e-52 | -8.615850e-47 |
| Msa0111330 | Msa0508590 | 0.802736 | 4.869785e-49 | -8.615850e-47 |
| Msa0111330 | Msa0509950 | -0.809136 | 2.196836e-50 | -8.615850e-47 |
| Msa0111330 | Msa0524590 | 0.800778 | 1.228526e-48 | -8.615850e-47 |
| Msa0111330 | Msa0525340 | 0.817578 | 3.067101e-52 | -8.615850e-47 |
| Msa0111330 | Msa0526540 | 0.808669 | 2.764392e-50 | -8.615850e-47 |
| Msa0111330 | Msa0540550 | 0.801609 | 8.305726e-49 | -8.615850e-47 |
| Msa0111330 | Msa0547990 | 0.805096 | 1.574122e-49 | -8.615850e-47 |
| Msa0111330 | Msa0550540 | 0.823811 | 1.132951e-53 | -8.615850e-47 |
| Msa0111330 | Msa0550570 | 0.823642 | 1.240847e-53 | -8.615850e-47 |
| Msa0111330 | Msa0576940 | 0.803165 | 3.971218e-49 | -8.615850e-47 |
| Msa0111330 | Msa0581130 | 0.800656 | 1.301189e-48 | -8.615850e-47 |
| Msa0111330 | Msa0603570 | 0.819282 | 1.260333e-52 | -8.615850e-47 |
| Msa0111330 | Msa0609000 | 0.816336 | 5.828945e-52 | -8.615850e-47 |
| Msa0111330 | Msa0610390 | 0.824363 | 8.405525e-54 | -8.615850e-47 |
| Msa0111330 | Msa0615580 | 0.823649 | 1.235971e-53 | -8.615850e-47 |
| Msa0111330 | Msa0616240 | 0.825988 | 3.470924e-54 | -8.615850e-47 |
| Msa0111330 | Msa0618930 | 0.828125 | 1.069385e-54 | -8.615850e-47 |
| Msa0111330 | Msa0648940 | 0.805797 | 1.122531e-49 | -8.615850e-47 |
| Msa0111330 | Msa0650920 | 0.814078 | 1.849756e-51 | -8.615850e-47 |
| Msa0111330 | Msa0659140 | 0.824560 | 7.555127e-54 | -8.615850e-47 |
| Msa0111330 | Msa0666230 | 0.820756 | 5.797276e-53 | -8.615850e-47 |
| Msa0111330 | Msa0669720 | 0.812490 | 4.129526e-51 | -8.615850e-47 |
| Msa0111330 | Msa0669760 | 0.801780 | 7.662431e-49 | -8.615850e-47 |
| Msa0111330 | Msa0683780 | 0.812923 | 3.320514e-51 | -8.615850e-47 |
| Msa0111330 | Msa0687230 | 0.812671 | 3.770657e-51 | -8.615850e-47 |
| Msa0111330 | Msa0687630 | 0.826354 | 2.841002e-54 | -8.615850e-47 |
| Msa0111330 | Msa0692940 | 0.809259 | 2.066891e-50 | -8.615850e-47 |
| Msa0111330 | Msa0694990 | 0.801019 | 1.096985e-48 | -8.615850e-47 |
| Msa0111330 | Msa0699570 | 0.823162 | 1.607130e-53 | -8.615850e-47 |
| Msa0111330 | Msa0705600 | 0.831208 | 1.902019e-55 | -8.615850e-47 |
| Msa0111330 | Msa0707390 | 0.865594 | 5.274600e-65 | -8.615850e-47 |
| Msa0111330 | Msa0735310 | 0.804876 | 1.750046e-49 | -8.615850e-47 |
| Msa0111330 | Msa0750920 | 0.830152 | 3.448426e-55 | -8.615850e-47 |
| Msa0111330 | Msa0751010 | 0.824802 | 6.626212e-54 | -8.615850e-47 |
| Msa0111330 | Msa0759860 | 0.819340 | 1.222872e-52 | -8.615850e-47 |
| Msa0111330 | Msa0785130 | 0.810776 | 9.742671e-51 | -8.615850e-47 |
| Msa0111330 | Msa0794050 | 0.828955 | 6.742547e-55 | -8.615850e-47 |
| Msa0111330 | Msa0805500 | 0.823722 | 1.188833e-53 | -8.615850e-47 |
| Msa0111330 | Msa0806920 | 0.800168 | 1.635746e-48 | -8.615850e-47 |
| Msa0111330 | Msa0818770 | 0.831333 | 1.772040e-55 | -8.615850e-47 |
| Msa0111330 | Msa0824640 | 0.806886 | 6.617111e-50 | -8.615850e-47 |
| Msa0111330 | Msa0826500 | 0.822296 | 2.555938e-53 | -8.615850e-47 |
| Msa0111330 | Msa0839200 | 0.814447 | 1.533881e-51 | -8.615850e-47 |
| Msa0111330 | Msa0847080 | 0.807198 | 5.682513e-50 | -8.615850e-47 |
| Msa0111330 | Msa0852860 | 0.805398 | 1.361002e-49 | -8.615850e-47 |
| Msa0111330 | Msa0864010 | 0.803159 | 3.981165e-49 | -8.615850e-47 |
| Msa0111330 | Msa0905990 | 0.809135 | 2.197542e-50 | -8.615850e-47 |
| Msa0111330 | Msa0913240 | 0.837336 | 5.519255e-57 | -8.615850e-47 |
| Msa0111330 | Msa0940830 | 0.807532 | 4.827600e-50 | -8.615850e-47 |
| Msa0111330 | Msa0943170 | 0.808267 | 3.368411e-50 | -8.615850e-47 |
| Msa0111330 | Msa0947530 | -0.803152 | 3.995143e-49 | -8.615850e-47 |
| Msa0111330 | Msa0957450 | -0.801226 | 9.952129e-49 | -8.615850e-47 |
| Msa0111330 | Msa0960830 | 0.826495 | 2.629222e-54 | -8.615850e-47 |
| Msa0111330 | Msa0963020 | 0.808665 | 2.770052e-50 | -8.615850e-47 |
| Msa0111330 | Msa0973320 | 0.809118 | 2.216047e-50 | -8.615850e-47 |
| Msa0111330 | Msa1019240 | 0.822787 | 1.964873e-53 | -8.615850e-47 |
| Msa0111330 | Msa1019260 | 0.815767 | 7.808499e-52 | -8.615850e-47 |
| Msa0111330 | Msa1022970 | 0.804684 | 1.919537e-49 | -8.615850e-47 |
| Msa0111330 | Msa1025940 | 0.826605 | 2.475565e-54 | -8.615850e-47 |
| Msa0111330 | Msa1026780 | 0.819324 | 1.233125e-52 | -8.615850e-47 |
| Msa0111330 | Msa1030930 | 0.821898 | 3.160808e-53 | -8.615850e-47 |
| Msa0111330 | Msa1070050 | 0.824277 | 8.807361e-54 | -8.615850e-47 |
| Msa0111330 | Msa1073400 | 0.814311 | 1.643465e-51 | -8.615850e-47 |
| Msa0111330 | Msa1083880 | 0.826000 | 3.448953e-54 | -8.615850e-47 |
| Msa0111330 | Msa1104210 | 0.821641 | 3.624115e-53 | -8.615850e-47 |
| Msa0111330 | Msa1120810 | 0.802474 | 5.515644e-49 | -8.615850e-47 |
| Msa0111330 | Msa1122820 | 0.812622 | 3.865214e-51 | -8.615850e-47 |
| Msa0111330 | Msa1126120 | -0.813092 | 3.049065e-51 | -8.615850e-47 |
| Msa0111330 | Msa1126850 | 0.817602 | 3.028166e-52 | -8.615850e-47 |
| Msa0111330 | Msa1131170 | 0.804555 | 2.041877e-49 | -8.615850e-47 |
| Msa0111330 | Msa1131560 | 0.853161 | 2.868560e-61 | -8.615850e-47 |
| Msa0111330 | Msa1132310 | 0.806583 | 7.667891e-50 | -8.615850e-47 |
| Msa0111330 | Msa1138870 | 0.813726 | 2.212381e-51 | -8.615850e-47 |
| Msa0111330 | Msa1165780 | 0.814118 | 1.812840e-51 | -8.615850e-47 |
| Msa0111330 | Msa1166870 | 0.855920 | 4.564007e-62 | -8.615850e-47 |
| Msa0111330 | Msa1179950 | 0.804153 | 2.476092e-49 | -8.615850e-47 |
| Msa0111330 | Msa1179980 | 0.825129 | 5.547826e-54 | -8.615850e-47 |
| Msa0111330 | Msa1183660 | 0.808732 | 2.679964e-50 | -8.615850e-47 |
| Msa0111330 | Msa1184370 | 0.814559 | 1.448505e-51 | -8.615850e-47 |
| Msa0111330 | Msa1201830 | 0.823413 | 1.403820e-53 | -8.615850e-47 |
| Msa0111330 | Msa1202580 | 0.815320 | 9.821561e-52 | -8.615850e-47 |
| Msa0111330 | Msa1205850 | 0.839337 | 1.683073e-57 | -8.615850e-47 |
| Msa0111330 | Msa1211830 | 0.821802 | 3.325673e-53 | -8.615850e-47 |
| Msa0111330 | Msa1213770 | 0.809482 | 1.851258e-50 | -8.615850e-47 |
| Msa0111330 | Msa1227690 | 0.840206 | 9.999296e-58 | -8.615850e-47 |
| Msa0111330 | Msa1253810 | 0.831182 | 1.929232e-55 | -8.615850e-47 |
| Msa0111330 | Msa1270620 | 0.828822 | 7.258897e-55 | -8.615850e-47 |
| Msa0111330 | Msa1270690 | 0.826204 | 3.084504e-54 | -8.615850e-47 |
| Msa0111330 | Msa1271580 | 0.800807 | 1.211896e-48 | -8.615850e-47 |
| Msa0111330 | Msa1276930 | 0.806297 | 8.808849e-50 | -8.615850e-47 |
| Msa0111330 | Msa1294840 | 0.812822 | 3.493683e-51 | -8.615850e-47 |
| Msa0111330 | Msa1296830 | 0.805152 | 1.532603e-49 | -8.615850e-47 |
| Msa0111330 | Msa1299700 | 0.806501 | 7.979349e-50 | -8.615850e-47 |
| Msa0111330 | Msa1303580 | 0.822526 | 2.259680e-53 | -8.615850e-47 |
| Msa0111330 | Msa1306990 | 0.814498 | 1.494535e-51 | -8.615850e-47 |
| Msa0111330 | Msa1310690 | 0.810680 | 1.021882e-50 | -8.615850e-47 |
| Msa0111330 | Msa1323990 | 0.810936 | 8.994608e-51 | -8.615850e-47 |
| Msa0111330 | Msa1325930 | 0.800014 | 1.757625e-48 | -8.615850e-47 |
| Msa0111330 | Msa1331250 | 0.815345 | 9.697459e-52 | -8.615850e-47 |
| Msa0111330 | Msa1331710 | 0.814890 | 1.223486e-51 | -8.615850e-47 |
| Msa0111330 | Msa1343290 | 0.805747 | 1.149907e-49 | -8.615850e-47 |
| Msa0111330 | Msa1349570 | 0.810533 | 1.099714e-50 | -8.615850e-47 |
| Msa0111330 | Msa1351540 | 0.800812 | 1.209242e-48 | -8.615850e-47 |
| Msa0111330 | Msa1363330 | 0.802374 | 5.782523e-49 | -8.615850e-47 |
| Msa0111330 | Msa1369190 | 0.801754 | 7.756334e-49 | -8.615850e-47 |
| Msa0111330 | Msa1386600 | 0.802341 | 5.873116e-49 | -8.615850e-47 |
| Msa0111330 | Msa1397940 | 0.848437 | 6.131602e-60 | -8.615850e-47 |
| Msa0111330 | Msa1408150 | 0.807658 | 4.539293e-50 | -8.615850e-47 |
| Msa0111330 | Msa1438640 | 0.822375 | 2.449825e-53 | -8.615850e-47 |
| Msa0111330 | Msa1459960 | 0.804870 | 1.755437e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111330 | MtrunA17_Chr1g0186081 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 1.99e-83 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0111330 | AT1G48200.1 | 46.610 | 118 | 59 | 3 | 5 | 120 | 3 | 118 | 1.73e-24 | 90.5 |
Find 36 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGCGACTGCCGCCATTTC+TGG | 0.140183 | 1_3:-25028211 | Msa0111330:intron |
| CAGATCTCAGATCATTATTT+TGG | 0.166457 | 1_3:+25024327 | None:intergenic |
| CCTAATAGACTTATTAGTTT+TGG | 0.244342 | 1_3:+25027795 | None:intergenic |
| AGTCTATTAGGAACACTCTT+TGG | 0.246535 | 1_3:-25027783 | Msa0111330:CDS |
| GTTTCGTTATTCAGTGAAAT+TGG | 0.261172 | 1_3:-25028279 | Msa0111330:five_prime_UTR |
| CCAAAACTAATAAGTCTATT+AGG | 0.314104 | 1_3:-25027795 | Msa0111330:CDS |
| GCAAGGCTCTATGAAATTTA+CGG | 0.323891 | 1_3:-25027703 | Msa0111330:CDS |
| GTCTATTAGGAACACTCTTT+GGG | 0.365365 | 1_3:-25027782 | Msa0111330:CDS |
| TAGAGCCTTGCCAAGGGAAC+TGG | 0.374122 | 1_3:+25027715 | None:intergenic |
| CACAGTGATCAATGTTGGTT+TGG | 0.374270 | 1_3:-25027902 | Msa0111330:CDS |
| GAAAACTGACTTACCAGAAA+TGG | 0.387735 | 1_3:+25028198 | None:intergenic |
| ATAATGTAATTGTTTGCATA+AGG | 0.396584 | 1_3:-25024149 | Msa0111330:three_prime_UTR |
| TTAGGAACACTCTTTGGGAT+TGG | 0.416748 | 1_3:-25027777 | Msa0111330:CDS |
| GTTACTCTCTGAAGCTCTCT+TGG | 0.417972 | 1_3:+25027924 | None:intergenic |
| CCAGAAATGGCGGCAGTCGC+TGG | 0.418221 | 1_3:+25028211 | None:intergenic |
| CTGAGATCTGAATTGCTGTC+GGG | 0.432683 | 1_3:-25024314 | Msa0111330:exon |
| TGCCGAAGCAGCGTCTGATT+CGG | 0.436762 | 1_3:-25027740 | Msa0111330:CDS |
| AGCCGAATCAGACGCTGCTT+CGG | 0.457423 | 1_3:+25027738 | None:intergenic |
| TGATTCGGCTCCAGTTCCCT+TGG | 0.500860 | 1_3:-25027725 | Msa0111330:CDS |
| CGGCTCCAGTTCCCTTGGCA+AGG | 0.507167 | 1_3:-25027720 | Msa0111330:CDS |
| CAAGTAGATGTATAACTTGG+AGG | 0.519957 | 1_3:-25024198 | Msa0111330:three_prime_UTR |
| GGATTAGCATCTTTCCTCAC+AGG | 0.533126 | 1_3:+25024361 | None:intergenic |
| TGGCAAGTAGATGTATAACT+TGG | 0.537987 | 1_3:-25024201 | Msa0111330:three_prime_UTR |
| TGAAGCTTTAGAAGTTGAGA+AGG | 0.542260 | 1_3:-25027827 | Msa0111330:CDS |
| ACAGTGATCAATGTTGGTTT+GGG | 0.553382 | 1_3:-25027901 | Msa0111330:CDS |
| TGTTGCAGAGATAGAGACAA+AGG | 0.559862 | 1_3:+25028246 | None:intergenic |
| AGTAACACAGTGATCAATGT+TGG | 0.560249 | 1_3:-25027907 | Msa0111330:CDS |
| CCTCCTCAACAATCTGCACC+TGG | 0.565711 | 1_3:-25027670 | Msa0111330:intron |
| AGGAAAGATGCTAATCCAGC+TGG | 0.568309 | 1_3:-25024355 | Msa0111330:CDS |
| CCAGGTGCAGATTGTTGAGG+AGG | 0.576080 | 1_3:+25027670 | None:intergenic |
| TGAGATCTGAATTGCTGTCG+GGG | 0.602085 | 1_3:-25024313 | Msa0111330:three_prime_UTR |
| TTACCAGGTGCAGATTGTTG+AGG | 0.618119 | 1_3:+25027667 | None:intergenic |
| TCTGAGATCTGAATTGCTGT+CGG | 0.618300 | 1_3:-25024315 | Msa0111330:exon |
| AATTTCATAGAGCCTTGCCA+AGG | 0.629006 | 1_3:+25027708 | None:intergenic |
| AACTGACTTACCAGAAATGG+CGG | 0.636737 | 1_3:+25028201 | None:intergenic |
| ATTTCATAGAGCCTTGCCAA+GGG | 0.656909 | 1_3:+25027709 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTAATTCATGTTAAAA+CGG | - | chr1_3:25026939-25026958 | Msa0111330:intron | 10.0% |
| !!! | AATTGCATATTTTATATTTT+AGG | + | chr1_3:25027464-25027483 | None:intergenic | 10.0% |
| !!! | TTATCATATTATTTTTTCAT+TGG | - | chr1_3:25028206-25028225 | Msa0111330:intron | 10.0% |
| !! | TTTCAAAGTATGAAAAATTA+GGG | - | chr1_3:25024320-25024339 | Msa0111330:exon | 15.0% |
| !! | AAAGAAGAAAGATTATAAAA+AGG | - | chr1_3:25026504-25026523 | Msa0111330:intron | 15.0% |
| !! | AAGAAGAAAGATTATAAAAA+GGG | - | chr1_3:25026505-25026524 | Msa0111330:intron | 15.0% |
| !! | AATTAATTATTATCAAACTG+TGG | + | chr1_3:25026929-25026948 | None:intergenic | 15.0% |
| !! | TGAATTTAGATTATGAATTA+AGG | - | chr1_3:25026962-25026981 | Msa0111330:intron | 15.0% |
| !! | AATTAAGGTAACATATAATT+AGG | - | chr1_3:25026977-25026996 | Msa0111330:intron | 15.0% |
| !! | ATTAAGGTAACATATAATTA+GGG | - | chr1_3:25026978-25026997 | Msa0111330:intron | 15.0% |
| !!! | TTATTTAGTTTCGTTTTAAT+TGG | + | chr1_3:25027540-25027559 | None:intergenic | 15.0% |
| !! | GTATAATAAAATATCTAACT+TGG | + | chr1_3:25027941-25027960 | None:intergenic | 15.0% |
| !! | GTTTCAAAGTATGAAAAATT+AGG | - | chr1_3:25024319-25024338 | Msa0111330:exon | 20.0% |
| !! | AATTAGGGTTATGAAAAATT+AGG | - | chr1_3:25024335-25024354 | Msa0111330:CDS | 20.0% |
| !! | CAATGATAGAAAAAACAAAA+GGG | + | chr1_3:25024409-25024428 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTTTTCTATCATT+GGG | - | chr1_3:25024408-25024427 | Msa0111330:intron | 20.0% |
| !! | TGATTGTATGCATTTATATA+TGG | - | chr1_3:25024849-25024868 | Msa0111330:intron | 20.0% |
| !! | AAAAGAAAACCTTAAAACAA+TGG | - | chr1_3:25025416-25025435 | Msa0111330:intron | 20.0% |
| !! | CCAAAATATTAATTTCATCA+GGG | + | chr1_3:25025467-25025486 | None:intergenic | 20.0% |
| !! | ACCAAAATATTAATTTCATC+AGG | + | chr1_3:25025468-25025487 | None:intergenic | 20.0% |
| !!! | ATGTATGTTGATTGTTATAA+AGG | - | chr1_3:25025516-25025535 | Msa0111330:intron | 20.0% |
| !! | TAATAATAATAAAAGAGCCT+TGG | - | chr1_3:25026559-25026578 | Msa0111330:intron | 20.0% |
| !! | AATAATAATAAAAGAGCCTT+GGG | - | chr1_3:25026560-25026579 | Msa0111330:intron | 20.0% |
| !! | AACGCATAATTATAAGTTTA+AGG | + | chr1_3:25026627-25026646 | None:intergenic | 20.0% |
| !! | TAACATATAATTAGGGTTTA+AGG | - | chr1_3:25026985-25027004 | Msa0111330:intron | 20.0% |
| !!! | TCTATTTATAGCTTTACAAT+TGG | - | chr1_3:25027194-25027213 | Msa0111330:intron | 20.0% |
| !! | TTAAAATCTAAGCAACTATA+AGG | - | chr1_3:25027218-25027237 | Msa0111330:intron | 20.0% |
| !! | TAAAATCTAAGCAACTATAA+GGG | - | chr1_3:25027219-25027238 | Msa0111330:intron | 20.0% |
| !!! | GATATTTTATTATACCAATC+AGG | - | chr1_3:25027946-25027965 | Msa0111330:CDS | 20.0% |
| !! | ATAATGTAATTGTTTGCATA+AGG | - | chr1_3:25028278-25028297 | Msa0111330:five_prime_UTR | 20.0% |
| !! | TTTTCTTCAATTCTTTCATC+TGG | - | chr1_3:25024278-25024297 | Msa0111330:three_prime_UTR | 25.0% |
| ! | CCAATGATAGAAAAAACAAA+AGG | + | chr1_3:25024410-25024429 | None:intergenic | 25.0% |
| !!! | CCTTTTGTTTTTTCTATCAT+TGG | - | chr1_3:25024407-25024426 | Msa0111330:intron | 25.0% |
| !!! | CCTAATAGACTTATTAGTTT+TGG | + | chr1_3:25024635-25024654 | None:intergenic | 25.0% |
| ! | CCAAAACTAATAAGTCTATT+AGG | - | chr1_3:25024632-25024651 | Msa0111330:intron | 25.0% |
| ! | AGAGATAAAAACAAATTACC+AGG | + | chr1_3:25024778-25024797 | None:intergenic | 25.0% |
| !!! | AGGTTTCTACAATCATTTTT+CGG | - | chr1_3:25024929-25024948 | Msa0111330:intron | 25.0% |
| ! | AATTTGATGAATTGTTTGAG+AGG | - | chr1_3:25025016-25025035 | Msa0111330:intron | 25.0% |
| ! | ATTTGATGAATTGTTTGAGA+GGG | - | chr1_3:25025017-25025036 | Msa0111330:intron | 25.0% |
| !!! | TGTTTTAAGGTTTTCTTTTC+TGG | + | chr1_3:25025415-25025434 | None:intergenic | 25.0% |
| !! | CCCTGATGAAATTAATATTT+TGG | - | chr1_3:25025464-25025483 | Msa0111330:intron | 25.0% |
| ! | TAACAATCAACATACATTCT+GGG | + | chr1_3:25025513-25025532 | None:intergenic | 25.0% |
| ! | ATAACAATCAACATACATTC+TGG | + | chr1_3:25025514-25025533 | None:intergenic | 25.0% |
| ! | TGATTGTTATAAAGGTCATT+TGG | - | chr1_3:25025524-25025543 | Msa0111330:intron | 25.0% |
| ! | TTATAAAGGTCATTTGGATA+AGG | - | chr1_3:25025530-25025549 | Msa0111330:intron | 25.0% |
| !! | AATGACAAATACTTTGAGAA+AGG | - | chr1_3:25025720-25025739 | Msa0111330:intron | 25.0% |
| !! | TTTCTCTTACAATTAGCTTA+CGG | + | chr1_3:25025830-25025849 | None:intergenic | 25.0% |
| !!! | TTATCGTTTAGCTTTTCTAT+GGG | + | chr1_3:25025889-25025908 | None:intergenic | 25.0% |
| !!! | AGTTTGAAAAGCTTGTTTTT+TGG | - | chr1_3:25026009-25026028 | Msa0111330:intron | 25.0% |
| !! | ATTTTACCCTAAAACTCTTT+TGG | + | chr1_3:25026236-25026255 | None:intergenic | 25.0% |
| !! | GGTAAAATTTGAGAACTTTT+GGG | - | chr1_3:25026248-25026267 | Msa0111330:intron | 25.0% |
| !! | ATCTTTGAGTTTATTGTTCA+TGG | - | chr1_3:25026310-25026329 | Msa0111330:intron | 25.0% |
| !! | TCTTTGAGTTTATTGTTCAT+GGG | - | chr1_3:25026311-25026330 | Msa0111330:intron | 25.0% |
| ! | ATTGTTCATGGGTATAAATT+AGG | - | chr1_3:25026322-25026341 | Msa0111330:intron | 25.0% |
| ! | AAGAAAGATTATAAAAAGGG+AGG | - | chr1_3:25026508-25026527 | Msa0111330:intron | 25.0% |
| ! | TGCGTTAATCTTAATTTCTA+AGG | - | chr1_3:25026641-25026660 | Msa0111330:intron | 25.0% |
| !! | AAACATTCATCTTTTGTTCT+TGG | + | chr1_3:25027159-25027178 | None:intergenic | 25.0% |
| ! | CAAAAGATGAATGTTTATGA+TGG | - | chr1_3:25027163-25027182 | Msa0111330:intron | 25.0% |
| !!! | TTTTAGGAACGAATATATGA+TGG | + | chr1_3:25027448-25027467 | None:intergenic | 25.0% |
| ! | AAAAATTGAATTACATCTGG+AGG | + | chr1_3:25027643-25027662 | None:intergenic | 25.0% |
| !! | TCCAGATGTAATTCAATTTT+TGG | - | chr1_3:25027642-25027661 | Msa0111330:intron | 25.0% |
| !! | CCAGATGTAATTCAATTTTT+GGG | - | chr1_3:25027643-25027662 | Msa0111330:intron | 25.0% |
| !!! | TTCTGGTTAGTTTTGATAAA+GGG | - | chr1_3:25027833-25027852 | Msa0111330:CDS | 25.0% |
| ! | CCATGTAAAAGAAATTTACA+TGG | + | chr1_3:25027878-25027897 | None:intergenic | 25.0% |
| !! | CCATGTAAATTTCTTTTACA+TGG | - | chr1_3:25027875-25027894 | Msa0111330:CDS | 25.0% |
| !!! | ATAAAGTATTTTCTGAGAGT+AGG | - | chr1_3:25028169-25028188 | Msa0111330:intron | 25.0% |
| GTTTCGTTATTCAGTGAAAT+TGG | - | chr1_3:25024148-25024167 | Msa0111330:three_prime_UTR | 30.0% | |
| !!! | TTTTCATACTTTGAAACGAG+CGG | + | chr1_3:25024316-25024335 | None:intergenic | 30.0% |
| ! | TTTCTATCATTGGGTTGTAA+TGG | - | chr1_3:25024417-25024436 | Msa0111330:intron | 30.0% |
| ! | TTCTATCATTGGGTTGTAAT+GGG | - | chr1_3:25024418-25024437 | Msa0111330:intron | 30.0% |
| TTCTCTCCTGAAATCAAAAA+GGG | + | chr1_3:25024448-25024467 | None:intergenic | 30.0% | |
| TTTCTCTCCTGAAATCAAAA+AGG | + | chr1_3:25024449-25024468 | None:intergenic | 30.0% | |
| GATTTCAGGAGAGAAAAAAA+TGG | - | chr1_3:25024453-25024472 | Msa0111330:intron | 30.0% | |
| TAGCATTAACCAATTCAATG+AGG | - | chr1_3:25024808-25024827 | Msa0111330:intron | 30.0% | |
| CTATAACACTTGTAGCATAA+CGG | + | chr1_3:25025093-25025112 | None:intergenic | 30.0% | |
| GACTGTTATGGTAATTATTC+AGG | - | chr1_3:25025214-25025233 | Msa0111330:intron | 30.0% | |
| ! | TCTGTTCAGTTTTTCCAAAT+TGG | + | chr1_3:25025268-25025287 | None:intergenic | 30.0% |
| GATATTACTGTTGAATGACT+AGG | - | chr1_3:25025308-25025327 | Msa0111330:intron | 30.0% | |
| AGCTGAGATAAAAATGTGAT+GGG | - | chr1_3:25025611-25025630 | Msa0111330:intron | 30.0% | |
| !!! | TATCGTTTAGCTTTTCTATG+GGG | + | chr1_3:25025888-25025907 | None:intergenic | 30.0% |
| !!! | GTTATCGTTTAGCTTTTCTA+TGG | + | chr1_3:25025890-25025909 | None:intergenic | 30.0% |
| ! | ATTGAGTATTTCTACTGTTG+TGG | - | chr1_3:25025959-25025978 | Msa0111330:intron | 30.0% |
| ATGCCTTAAAATCTCATCAA+AGG | - | chr1_3:25025984-25026003 | Msa0111330:intron | 30.0% | |
| TGCCTTAAAATCTCATCAAA+GGG | - | chr1_3:25025985-25026004 | Msa0111330:intron | 30.0% | |
| ! | TTCCCTTTGATGAGATTTTA+AGG | + | chr1_3:25025990-25026009 | None:intergenic | 30.0% |
| TGAGAAAAACAGCTTGAATA+AGG | + | chr1_3:25026191-25026210 | None:intergenic | 30.0% | |
| ! | GGGTAAAATTTGAGAACTTT+TGG | - | chr1_3:25026247-25026266 | Msa0111330:intron | 30.0% |
| !!! | AACTTTTGGGTTAGATTCTA+GGG | - | chr1_3:25026261-25026280 | Msa0111330:intron | 30.0% |
| ! | AACTCTTTTGTATCTCTGAT+AGG | - | chr1_3:25026381-25026400 | Msa0111330:intron | 30.0% |
| CATAAAGTTTCGATCTTCAA+GGG | + | chr1_3:25026763-25026782 | None:intergenic | 30.0% | |
| ACATAAAGTTTCGATCTTCA+AGG | + | chr1_3:25026764-25026783 | None:intergenic | 30.0% | |
| CTTGTCTAAATTCACTTGTT+CGG | - | chr1_3:25026823-25026842 | Msa0111330:intron | 30.0% | |
| ! | TATAATTAGGGTTTAAGGCT+TGG | - | chr1_3:25026990-25027009 | Msa0111330:intron | 30.0% |
| ATAAGTCTAATGACGTAATC+CGG | + | chr1_3:25027022-25027041 | None:intergenic | 30.0% | |
| AAAACTACAACAGAGTAACT+TGG | - | chr1_3:25027251-25027270 | Msa0111330:intron | 30.0% | |
| AAACTACAACAGAGTAACTT+GGG | - | chr1_3:25027252-25027271 | Msa0111330:intron | 30.0% | |
| GAGCAAAAATACGAAAGATT+CGG | + | chr1_3:25027383-25027402 | None:intergenic | 30.0% | |
| TGTAGTAAACTAGCTCAAAA+AGG | - | chr1_3:25027484-25027503 | Msa0111330:intron | 30.0% | |
| CCCAAAAATTGAATTACATC+TGG | + | chr1_3:25027646-25027665 | None:intergenic | 30.0% | |
| CAATATTTGGTTACACGATT+TGG | + | chr1_3:25027669-25027688 | None:intergenic | 30.0% | |
| CAAATCGTGTAACCAAATAT+TGG | - | chr1_3:25027667-25027686 | Msa0111330:intron | 30.0% | |
| AGAACAAAGATAATGAGAAG+AGG | + | chr1_3:25027701-25027720 | None:intergenic | 30.0% | |
| TTTGTTCTTTGCTTTGATTG+TGG | - | chr1_3:25027713-25027732 | Msa0111330:CDS | 30.0% | |
| !! | TGTGGATTTGTTATACACAT+AGG | - | chr1_3:25027731-25027750 | Msa0111330:CDS | 30.0% |
| TTGTTATACACATAGGTTAC+TGG | - | chr1_3:25027738-25027757 | Msa0111330:CDS | 30.0% | |
| !!! | GTTCTGGTTAGTTTTGATAA+AGG | - | chr1_3:25027832-25027851 | Msa0111330:CDS | 30.0% |
| CATGGTAGTTGTTGTAAATT+TGG | + | chr1_3:25027860-25027879 | None:intergenic | 30.0% | |
| TTTACTACTGCTTTACAAGA+TGG | + | chr1_3:25027901-25027920 | None:intergenic | 30.0% | |
| ATCTTGTAAAGCAGTAGTAA+AGG | - | chr1_3:25027900-25027919 | Msa0111330:CDS | 30.0% | |
| ATTATACCAATCAGGTGAAT+TGG | - | chr1_3:25027954-25027973 | Msa0111330:CDS | 30.0% | |
| ATAGGTAAGAAATCATGACA+TGG | + | chr1_3:25028015-25028034 | None:intergenic | 30.0% | |
| ACCTATAATTACTTCTGTTG+TGG | - | chr1_3:25028029-25028048 | Msa0111330:intron | 30.0% | |
| ACCACAACAGAAGTAATTAT+AGG | + | chr1_3:25028033-25028052 | None:intergenic | 30.0% | |
| ! | CAGATCTCAGATCATTATTT+TGG | + | chr1_3:25028103-25028122 | None:intergenic | 30.0% |
| ! | GAAAACTGACTTACCAGAAA+TGG | + | chr1_3:25024232-25024251 | None:intergenic | 35.0% |
| ! | GTTGAGTTTGAAGTGATGTT+AGG | + | chr1_3:25024257-25024276 | None:intergenic | 35.0% |
| TCTCTCCTGAAATCAAAAAG+GGG | + | chr1_3:25024447-25024466 | None:intergenic | 35.0% | |
| AGTAACACAGTGATCAATGT+TGG | - | chr1_3:25024520-25024539 | Msa0111330:intron | 35.0% | |
| !! | ACAGTGATCAATGTTGGTTT+GGG | - | chr1_3:25024526-25024545 | Msa0111330:intron | 35.0% |
| !! | TGAAGCTTTAGAAGTTGAGA+AGG | - | chr1_3:25024600-25024619 | Msa0111330:intron | 35.0% |
| AGTCTATTAGGAACACTCTT+TGG | - | chr1_3:25024644-25024663 | Msa0111330:intron | 35.0% | |
| GTCTATTAGGAACACTCTTT+GGG | - | chr1_3:25024645-25024664 | Msa0111330:intron | 35.0% | |
| GCAAGGCTCTATGAAATTTA+CGG | - | chr1_3:25024724-25024743 | Msa0111330:intron | 35.0% | |
| TAACCAATTCAATGAGGCAA+TGG | - | chr1_3:25024814-25024833 | Msa0111330:intron | 35.0% | |
| TTGCGAATTGCAGAAAATAG+CGG | - | chr1_3:25025056-25025075 | Msa0111330:intron | 35.0% | |
| TCCTCAATGTTGTCAAATAG+TGG | + | chr1_3:25025196-25025215 | None:intergenic | 35.0% | |
| ACTGAACAGAACACTTGTAA+CGG | - | chr1_3:25025278-25025297 | Msa0111330:intron | 35.0% | |
| TAGGATATTACTGTAACACG+AGG | - | chr1_3:25025327-25025346 | Msa0111330:intron | 35.0% | |
| !! | TTTCTTTTCTGGCGAAATCT+TGG | + | chr1_3:25025404-25025423 | None:intergenic | 35.0% |
| ! | CTACACAACAACTGATTCAT+TGG | - | chr1_3:25025580-25025599 | Msa0111330:intron | 35.0% |
| ! | CATCACATTTTTATCTCAGC+TGG | + | chr1_3:25025612-25025631 | None:intergenic | 35.0% |
| CAGCTGAGATAAAAATGTGA+TGG | - | chr1_3:25025610-25025629 | Msa0111330:intron | 35.0% | |
| GCTGAGATAAAAATGTGATG+GGG | - | chr1_3:25025612-25025631 | Msa0111330:intron | 35.0% | |
| CTGAGATAAAAATGTGATGG+GGG | - | chr1_3:25025613-25025632 | Msa0111330:intron | 35.0% | |
| ! | TAAAAATGTGATGGGGGAAA+TGG | - | chr1_3:25025619-25025638 | Msa0111330:intron | 35.0% |
| ! | AAAAATGTGATGGGGGAAAT+GGG | - | chr1_3:25025620-25025639 | Msa0111330:intron | 35.0% |
| TCACTTCAAGAGTTTAGAAG+AGG | + | chr1_3:25025853-25025872 | None:intergenic | 35.0% | |
| !!! | ATCGTTTAGCTTTTCTATGG+GGG | + | chr1_3:25025887-25025906 | None:intergenic | 35.0% |
| AAACAGCTTGAATAAGGTTC+AGG | + | chr1_3:25026185-25026204 | None:intergenic | 35.0% | |
| !!! | GAACTTTTGGGTTAGATTCT+AGG | - | chr1_3:25026260-25026279 | Msa0111330:intron | 35.0% |
| ! | CAAAGATTTTTCGCTTTCCA+AGG | + | chr1_3:25026297-25026316 | None:intergenic | 35.0% |
| TAAAAGAGCCTTGGGATTAT+TGG | - | chr1_3:25026568-25026587 | Msa0111330:intron | 35.0% | |
| ATGATGAACCAATAATCCCA+AGG | + | chr1_3:25026579-25026598 | None:intergenic | 35.0% | |
| AGAATAGTCTAGCAAACCTT+GGG | + | chr1_3:25026789-25026808 | None:intergenic | 35.0% | |
| CGAACAAGTGAATTTAGACA+AGG | + | chr1_3:25026825-25026844 | None:intergenic | 35.0% | |
| ATCAATTCATAAAGCGAACG+CGG | + | chr1_3:25026860-25026879 | None:intergenic | 35.0% | |
| AGTAGACTCTTCTTTGTCTT+GGG | + | chr1_3:25027053-25027072 | None:intergenic | 35.0% | |
| ACTAACGTTCATTGTAGACA+TGG | - | chr1_3:25027074-25027093 | Msa0111330:intron | 35.0% | |
| CTAACGTTCATTGTAGACAT+GGG | - | chr1_3:25027075-25027094 | Msa0111330:intron | 35.0% | |
| TAACGTTCATTGTAGACATG+GGG | - | chr1_3:25027076-25027095 | Msa0111330:intron | 35.0% | |
| !! | ATATATGATGGAAGGTGTCT+TGG | + | chr1_3:25027436-25027455 | None:intergenic | 35.0% |
| ! | AGGAACGAATATATGATGGA+AGG | + | chr1_3:25027444-25027463 | None:intergenic | 35.0% |
| TGTAAGAAACCCATTGATAG+TGG | - | chr1_3:25027599-25027618 | Msa0111330:intron | 35.0% | |
| GAGGAACAAACACCAATATT+TGG | + | chr1_3:25027682-25027701 | None:intergenic | 35.0% | |
| AGATGAGGAGCAAATAACAA+TGG | + | chr1_3:25027810-25027829 | None:intergenic | 35.0% | |
| AACTAACCAGAACAAAGATG+AGG | + | chr1_3:25027825-25027844 | None:intergenic | 35.0% | |
| CAGTAGTAAAGGTTTGATGT+TGG | - | chr1_3:25027911-25027930 | Msa0111330:CDS | 35.0% | |
| !!! | TCTCAGATCATTATTTTGGC+TGG | + | chr1_3:25028099-25028118 | None:intergenic | 35.0% |
| ! | TATAAGCTTTTAGCGTTGCA+AGG | - | chr1_3:25028140-25028159 | Msa0111330:intron | 35.0% |
| TGGCAAGTAGATGTATAACT+TGG | - | chr1_3:25028226-25028245 | Msa0111330:five_prime_UTR | 35.0% | |
| CAAGTAGATGTATAACTTGG+AGG | - | chr1_3:25028229-25028248 | Msa0111330:five_prime_UTR | 35.0% | |
| TGTTGCAGAGATAGAGACAA+AGG | + | chr1_3:25024184-25024203 | None:intergenic | 40.0% | |
| ! | AACTGACTTACCAGAAATGG+CGG | + | chr1_3:25024229-25024248 | None:intergenic | 40.0% |
| ! | CACAGTGATCAATGTTGGTT+TGG | - | chr1_3:25024525-25024544 | Msa0111330:intron | 40.0% |
| !!! | GGTGCTGTTTTTGCAATTCT+GGG | - | chr1_3:25024547-25024566 | Msa0111330:intron | 40.0% |
| !! | TTAGGAACACTCTTTGGGAT+TGG | - | chr1_3:25024650-25024669 | Msa0111330:intron | 40.0% |
| ATTTCATAGAGCCTTGCCAA+GGG | + | chr1_3:25024721-25024740 | None:intergenic | 40.0% | |
| AATTTCATAGAGCCTTGCCA+AGG | + | chr1_3:25024722-25024741 | None:intergenic | 40.0% | |
| CTTCCATTGCCTCATTGAAT+TGG | + | chr1_3:25024820-25024839 | None:intergenic | 40.0% | |
| ATTCAATGAGGCAATGGAAG+TGG | - | chr1_3:25024820-25024839 | Msa0111330:intron | 40.0% | |
| ! | TCATTGCTAGCTTGCATGAT+AGG | - | chr1_3:25024909-25024928 | Msa0111330:intron | 40.0% |
| ACAACTCGCAGGAAACTATA+TGG | + | chr1_3:25024957-25024976 | None:intergenic | 40.0% | |
| GCCACTATTTGACAACATTG+AGG | - | chr1_3:25025192-25025211 | Msa0111330:intron | 40.0% | |
| GACAACATTGAGGACTGTTA+TGG | - | chr1_3:25025202-25025221 | Msa0111330:intron | 40.0% | |
| TATCTTGTCTCAGTGTCACA+AGG | - | chr1_3:25025241-25025260 | Msa0111330:intron | 40.0% | |
| !! | TGGGCTAAGCCATTGTTTTA+AGG | + | chr1_3:25025428-25025447 | None:intergenic | 40.0% |
| CTGGGAGCTTAGATATCATA+TGG | + | chr1_3:25025495-25025514 | None:intergenic | 40.0% | |
| TGAATAAGGTTCAGGATCTG+AGG | + | chr1_3:25026177-25026196 | None:intergenic | 40.0% | |
| !! | TCTCATTTGTTGTGCAATCC+CGG | - | chr1_3:25026206-25026225 | Msa0111330:intron | 40.0% |
| ! | TAAAACTCTTTTGGTCTCCC+GGG | + | chr1_3:25026227-25026246 | None:intergenic | 40.0% |
| ! | CTAAAACTCTTTTGGTCTCC+CGG | + | chr1_3:25026228-25026247 | None:intergenic | 40.0% |
| ! | GGGAGACCAAAAGAGTTTTA+GGG | - | chr1_3:25026227-25026246 | Msa0111330:intron | 40.0% |
| !! | TTTGGGTTAGATTCTAGGGT+TGG | - | chr1_3:25026265-25026284 | Msa0111330:intron | 40.0% |
| !! | TAAAAGAGTATCGTTCCGCT+AGG | - | chr1_3:25026442-25026461 | Msa0111330:intron | 40.0% |
| !! | AAAAGAGTATCGTTCCGCTA+GGG | - | chr1_3:25026443-25026462 | Msa0111330:intron | 40.0% |
| TCGAATTCATAACTCCCTAG+CGG | + | chr1_3:25026460-25026479 | None:intergenic | 40.0% | |
| AAGGGAGGTTTAATTGCTGA+AGG | - | chr1_3:25026523-25026542 | Msa0111330:intron | 40.0% | |
| ATGAGAATAGGTGTGGTTGT+TGG | + | chr1_3:25026722-25026741 | None:intergenic | 40.0% | |
| AACAACCACACCTATTCTCA+TGG | - | chr1_3:25026721-25026740 | Msa0111330:intron | 40.0% | |
| ATCATCCATGAGAATAGGTG+TGG | + | chr1_3:25026729-25026748 | None:intergenic | 40.0% | |
| AGGCAATCATCCATGAGAAT+AGG | + | chr1_3:25026734-25026753 | None:intergenic | 40.0% | |
| TTCTCATGGATGATTGCCTT+TGG | - | chr1_3:25026735-25026754 | Msa0111330:intron | 40.0% | |
| TCTCATGGATGATTGCCTTT+GGG | - | chr1_3:25026736-25026755 | Msa0111330:intron | 40.0% | |
| TCGAAACTTTATGTGTCCCA+AGG | - | chr1_3:25026770-25026789 | Msa0111330:intron | 40.0% | |
| GAGAATAGTCTAGCAAACCT+TGG | + | chr1_3:25026790-25026809 | None:intergenic | 40.0% | |
| CTTCTTTGTCTTGGGATTGT+TGG | + | chr1_3:25027045-25027064 | None:intergenic | 40.0% | |
| GAGTAGACTCTTCTTTGTCT+TGG | + | chr1_3:25027054-25027073 | None:intergenic | 40.0% | |
| AACGTTCATTGTAGACATGG+GGG | - | chr1_3:25027077-25027096 | Msa0111330:intron | 40.0% | |
| !!! | CCTTTTGCTGCTTTTTCTTC+GGG | + | chr1_3:25027278-25027297 | None:intergenic | 40.0% |
| !!! | GCCTTTTGCTGCTTTTTCTT+CGG | + | chr1_3:25027279-25027298 | None:intergenic | 40.0% |
| CTCTCAGATCCACTATCAAT+GGG | + | chr1_3:25027611-25027630 | None:intergenic | 40.0% | |
| TTTGCTCCTCATCTTTGTTC+TGG | - | chr1_3:25027816-25027835 | Msa0111330:CDS | 40.0% | |
| GATTCACCAATTCACCTGAT+TGG | + | chr1_3:25027963-25027982 | None:intergenic | 40.0% | |
| ! | TCCACATTTTCGATGCACAA+TGG | - | chr1_3:25027981-25028000 | Msa0111330:intron | 40.0% |
| TCCATTGTGCATCGAAAATG+TGG | + | chr1_3:25027985-25028004 | None:intergenic | 40.0% | |
| ! | ACTTCTGTTGTGGTTTTTCC+AGG | - | chr1_3:25028039-25028058 | Msa0111330:intron | 40.0% |
| ! | TCTGAGATCTGAATTGCTGT+CGG | - | chr1_3:25028112-25028131 | Msa0111330:intron | 40.0% |
| !!! | GGTCACCCCTTTTTGATTTC+AGG | - | chr1_3:25024439-25024458 | Msa0111330:intron | 45.0% |
| !! | GTTACTCTCTGAAGCTCTCT+TGG | + | chr1_3:25024506-25024525 | None:intergenic | 45.0% |
| !!! | GGGTGCTGTTTTTGCAATTC+TGG | - | chr1_3:25024546-25024565 | Msa0111330:intron | 45.0% |
| TTACCAGGTGCAGATTGTTG+AGG | + | chr1_3:25024763-25024782 | None:intergenic | 45.0% | |
| ! | AACACAAAAGCACAACTCGC+AGG | + | chr1_3:25024968-25024987 | None:intergenic | 45.0% |
| CAGTGTCACAAGGTCCAATT+TGG | - | chr1_3:25025251-25025270 | Msa0111330:intron | 45.0% | |
| CAATGGCTTAGCCCAAAATC+AGG | - | chr1_3:25025433-25025452 | Msa0111330:intron | 45.0% | |
| GCTTAGCCCAAAATCAGGTT+AGG | - | chr1_3:25025438-25025457 | Msa0111330:intron | 45.0% | |
| ! | GGGCTTCCTAACCTGATTTT+GGG | + | chr1_3:25025447-25025466 | None:intergenic | 45.0% |
| ! | AGGGCTTCCTAACCTGATTT+TGG | + | chr1_3:25025448-25025467 | None:intergenic | 45.0% |
| ATGGGGGAAATGGGAAATAG+AGG | - | chr1_3:25025629-25025648 | Msa0111330:intron | 45.0% | |
| TGGGGGAAATGGGAAATAGA+GGG | - | chr1_3:25025630-25025649 | Msa0111330:intron | 45.0% | |
| GGAAATAGAGGGAGAAAGCA+GGG | - | chr1_3:25025641-25025660 | Msa0111330:intron | 45.0% | |
| ACATTTCGCTCCTCAACTAC+TGG | + | chr1_3:25025678-25025697 | None:intergenic | 45.0% | |
| !! | CTCATTTGTTGTGCAATCCC+GGG | - | chr1_3:25026207-25026226 | Msa0111330:intron | 45.0% |
| ! | CGGGAGACCAAAAGAGTTTT+AGG | - | chr1_3:25026226-25026245 | Msa0111330:intron | 45.0% |
| !! | TCTAGGGTTGGTAAACACCT+TGG | - | chr1_3:25026277-25026296 | Msa0111330:intron | 45.0% |
| !! | ATACACTCACTGACTTCGAG+AGG | + | chr1_3:25026695-25026714 | None:intergenic | 45.0% |
| GAATAGGTGTGGTTGTTGGA+GGG | + | chr1_3:25026718-25026737 | None:intergenic | 45.0% | |
| AGAATAGGTGTGGTTGTTGG+AGG | + | chr1_3:25026719-25026738 | None:intergenic | 45.0% | |
| ! | GTTTAAGGCTTGGCTTGATC+CGG | - | chr1_3:25027000-25027019 | Msa0111330:intron | 45.0% |
| CCCGAAGAAAAAGCAGCAAA+AGG | - | chr1_3:25027275-25027294 | Msa0111330:intron | 45.0% | |
| ! | AAAGGAGTCTGGAGCTGATT+TGG | + | chr1_3:25027405-25027424 | None:intergenic | 45.0% |
| TGGAGCAAAAGAAAGGAGTC+TGG | + | chr1_3:25027416-25027435 | None:intergenic | 45.0% | |
| GGTGTCTTGGAGCAAAAGAA+AGG | + | chr1_3:25027423-25027442 | None:intergenic | 45.0% | |
| GCTCTCAGATCCACTATCAA+TGG | + | chr1_3:25027612-25027631 | None:intergenic | 45.0% | |
| ATTACATCTGGAGGAGAGAG+CGG | + | chr1_3:25027634-25027653 | None:intergenic | 45.0% | |
| ! | TTTTTCCAGGAGATCCTGTG+AGG | - | chr1_3:25028052-25028071 | Msa0111330:intron | 45.0% |
| ! | GGATTAGCATCTTTCCTCAC+AGG | + | chr1_3:25028069-25028088 | None:intergenic | 45.0% |
| AGGAAAGATGCTAATCCAGC+TGG | - | chr1_3:25028072-25028091 | Msa0111330:intron | 45.0% | |
| !!! | ATTATTTTGGCTGGACCAGC+TGG | + | chr1_3:25028090-25028109 | None:intergenic | 45.0% |
| CTGAGATCTGAATTGCTGTC+GGG | - | chr1_3:25028113-25028132 | Msa0111330:intron | 45.0% | |
| TGAGATCTGAATTGCTGTCG+GGG | - | chr1_3:25028114-25028133 | Msa0111330:intron | 45.0% | |
| GGGAAATAGAGGGAGAAAGC+AGG | - | chr1_3:25025640-25025659 | Msa0111330:intron | 50.0% | |
| ATAGAGGGAGAAAGCAGGGT+TGG | - | chr1_3:25025645-25025664 | Msa0111330:intron | 50.0% | |
| TGGAGGCAAACCAGTAGTTG+AGG | - | chr1_3:25025665-25025684 | Msa0111330:intron | 50.0% | |
| TTTCACAGTCCTCACCCACA+AGG | - | chr1_3:25026103-25026122 | Msa0111330:intron | 50.0% | |
| TTCGATAGACCGTGCACTTG+CGG | + | chr1_3:25026412-25026431 | None:intergenic | 50.0% | |
| TCGATCTTCAAGGGTCCCAA+AGG | + | chr1_3:25026754-25026773 | None:intergenic | 50.0% | |
| GAACGCGGAGGGTTTGATAA+TGG | + | chr1_3:25026902-25026921 | None:intergenic | 50.0% | |
| TCAAACTGTGGAAGCGAACG+CGG | + | chr1_3:25026917-25026936 | None:intergenic | 50.0% | |
| TCTTTCCTCACAGGATCTCC+TGG | + | chr1_3:25028060-25028079 | None:intergenic | 50.0% | |
| TGCCGAAGCAGCGTCTGATT+CGG | - | chr1_3:25024687-25024706 | Msa0111330:intron | 55.0% | |
| AGCCGAATCAGACGCTGCTT+CGG | + | chr1_3:25024692-25024711 | None:intergenic | 55.0% | |
| ! | TGATTCGGCTCCAGTTCCCT+TGG | - | chr1_3:25024702-25024721 | Msa0111330:intron | 55.0% |
| TAGAGCCTTGCCAAGGGAAC+TGG | + | chr1_3:25024715-25024734 | None:intergenic | 55.0% | |
| CCAGGTGCAGATTGTTGAGG+AGG | + | chr1_3:25024760-25024779 | None:intergenic | 55.0% | |
| CCTCCTCAACAATCTGCACC+TGG | - | chr1_3:25024757-25024776 | Msa0111330:intron | 55.0% | |
| TCCCAGTAGGGGCCTTAAAG+CGG | - | chr1_3:25026057-25026076 | Msa0111330:intron | 55.0% | |
| TCCAACTGCCACCCGCTTTA+AGG | + | chr1_3:25026072-25026091 | None:intergenic | 55.0% | |
| ACAGTCCTCACCCACAAGGT+GGG | - | chr1_3:25026107-25026126 | Msa0111330:intron | 55.0% | |
| TAGGCCAAACCGCAAGTGCA+CGG | - | chr1_3:25026400-25026419 | Msa0111330:intron | 55.0% | |
| TAGACCGTGCACTTGCGGTT+TGG | + | chr1_3:25026407-25026426 | None:intergenic | 55.0% | |
| GCAGCAAAAGGCCTTCTGTG+AGG | - | chr1_3:25027287-25027306 | Msa0111330:intron | 55.0% | |
| GCAAAAGGCCTTCTGTGAGG+TGG | - | chr1_3:25027290-25027309 | Msa0111330:intron | 55.0% | |
| CCCAAGTCAGAAGCTTGGCA+CGG | + | chr1_3:25027343-25027362 | None:intergenic | 55.0% | |
| CCGTGCCAAGCTTCTGACTT+GGG | - | chr1_3:25027340-25027359 | Msa0111330:intron | 55.0% | |
| ! | CGTGCCAAGCTTCTGACTTG+GGG | - | chr1_3:25027341-25027360 | Msa0111330:intron | 55.0% |
| !! | GTGCCAAGCTTCTGACTTGG+GGG | - | chr1_3:25027342-25027361 | Msa0111330:intron | 55.0% |
| AAGCCCCCAAGTCAGAAGCT+TGG | + | chr1_3:25027348-25027367 | None:intergenic | 55.0% | |
| GAGGGAGAAAGCAGGGTTGG+AGG | - | chr1_3:25025648-25025667 | Msa0111330:intron | 60.0% | |
| TAGCTATTGCCCCACCCGCA+AGG | - | chr1_3:25026033-25026052 | Msa0111330:intron | 60.0% | |
| !! | CCCGCTTTAAGGCCCCTACT+GGG | + | chr1_3:25026061-25026080 | None:intergenic | 60.0% |
| CCCAGTAGGGGCCTTAAAGC+GGG | - | chr1_3:25026058-25026077 | Msa0111330:intron | 60.0% | |
| !! | ACCCGCTTTAAGGCCCCTAC+TGG | + | chr1_3:25026062-25026081 | None:intergenic | 60.0% |
| AGTAGGGGCCTTAAAGCGGG+TGG | - | chr1_3:25026061-25026080 | Msa0111330:intron | 60.0% | |
| GCCTTAAAGCGGGTGGCAGT+TGG | - | chr1_3:25026068-25026087 | Msa0111330:intron | 60.0% | |
| CACAGTCCTCACCCACAAGG+TGG | - | chr1_3:25026106-25026125 | Msa0111330:intron | 60.0% | |
| TCCTCACCCACAAGGTGGGT+AGG | - | chr1_3:25026111-25026130 | Msa0111330:intron | 60.0% | |
| ACTGTGGAAGCGAACGCGGA+GGG | + | chr1_3:25026913-25026932 | None:intergenic | 60.0% | |
| AACTGTGGAAGCGAACGCGG+AGG | + | chr1_3:25026914-25026933 | None:intergenic | 60.0% | |
| AGGCCTTCTGTGAGGTGGCA+CGG | - | chr1_3:25027295-25027314 | Msa0111330:intron | 60.0% | |
| GGCCGTGCCACATATTGGCA+CGG | - | chr1_3:25027316-25027335 | Msa0111330:intron | 60.0% | |
| GCCGTGCCACATATTGGCAC+GGG | - | chr1_3:25027317-25027336 | Msa0111330:intron | 60.0% | |
| GCCCGTGCCAATATGTGGCA+CGG | + | chr1_3:25027321-25027340 | None:intergenic | 60.0% | |
| GCCGTGCCAAGCTTCTGACT+TGG | - | chr1_3:25027339-25027358 | Msa0111330:intron | 60.0% | |
| CCAGAAATGGCGGCAGTCGC+TGG | + | chr1_3:25024219-25024238 | None:intergenic | 65.0% | |
| CCAGCGACTGCCGCCATTTC+TGG | - | chr1_3:25024216-25024235 | Msa0111330:three_prime_UTR | 65.0% | |
| CGGCTCCAGTTCCCTTGGCA+AGG | - | chr1_3:25024707-25024726 | Msa0111330:intron | 65.0% | |
| TACTGGGAGCCTTGCGGGTG+GGG | + | chr1_3:25026045-25026064 | None:intergenic | 65.0% | |
| CTACTGGGAGCCTTGCGGGT+GGG | + | chr1_3:25026046-25026065 | None:intergenic | 65.0% | |
| CACCCGCAAGGCTCCCAGTA+GGG | - | chr1_3:25026045-25026064 | Msa0111330:intron | 65.0% | |
| ACCCGCAAGGCTCCCAGTAG+GGG | - | chr1_3:25026046-25026065 | Msa0111330:intron | 65.0% | |
| GCCTACCCACCTTGTGGGTG+AGG | + | chr1_3:25026115-25026134 | None:intergenic | 65.0% | |
| ACCCACAAGGTGGGTAGGCC+TGG | - | chr1_3:25026116-25026135 | Msa0111330:intron | 65.0% | |
| GCCAGGCCTACCCACCTTGT+GGG | + | chr1_3:25026120-25026139 | None:intergenic | 65.0% | |
| GGCACGGCCGTGCCACATAT+TGG | - | chr1_3:25027311-25027330 | Msa0111330:intron | 65.0% | |
| GCACGGCCCGTGCCAATATG+TGG | + | chr1_3:25027326-25027345 | None:intergenic | 65.0% | |
| CCTACTGGGAGCCTTGCGGG+TGG | + | chr1_3:25026047-25026066 | None:intergenic | 70.0% | |
| CCACCCGCAAGGCTCCCAGT+AGG | - | chr1_3:25026044-25026063 | Msa0111330:intron | 70.0% | |
| GCCCCTACTGGGAGCCTTGC+GGG | + | chr1_3:25026050-25026069 | None:intergenic | 70.0% | |
| GGCCCCTACTGGGAGCCTTG+CGG | + | chr1_3:25026051-25026070 | None:intergenic | 70.0% | |
| GGCCAGGCCTACCCACCTTG+TGG | + | chr1_3:25026121-25026140 | None:intergenic | 70.0% | |
| ! | GATCTGAGGCAGCCGCCTCG+CGG | + | chr1_3:25026163-25026182 | None:intergenic | 70.0% |
| CGGCCGTGCCACCTCACAGA+AGG | + | chr1_3:25027301-25027320 | None:intergenic | 70.0% | |
| GGATGGCTCCGTCCGCCTCG+CGG | + | chr1_3:25026142-25026161 | None:intergenic | 75.0% | |
| GGACGGAGCCATCCGCGAGG+CGG | - | chr1_3:25026148-25026167 | Msa0111330:intron | 75.0% | |
| TGAGGCAGCCGCCTCGCGGA+TGG | + | chr1_3:25026159-25026178 | None:intergenic | 75.0% | |
| ! | GGTGGGTAGGCCTGGCCGCG+AGG | - | chr1_3:25026124-25026143 | Msa0111330:intron | 80.0% |
| ! | GGGTAGGCCTGGCCGCGAGG+CGG | - | chr1_3:25026127-25026146 | Msa0111330:intron | 80.0% |
| ! | AGGCCTGGCCGCGAGGCGGA+CGG | - | chr1_3:25026131-25026150 | Msa0111330:intron | 80.0% |
| ! | GGCGGACGGAGCCATCCGCG+AGG | - | chr1_3:25026145-25026164 | Msa0111330:intron | 80.0% |
| ! | GCTCCGTCCGCCTCGCGGCC+AGG | + | chr1_3:25026137-25026156 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 25024129 | 25028320 | 25024129 | ID=Msa0111330;Name=Msa0111330 |
| chr1_3 | mRNA | 25024129 | 25028320 | 25024129 | ID=Msa0111330-mRNA-1;Parent=Msa0111330;Name=Msa0111330-mRNA-1;_AED=0.00;_eAED=0.00;_QI=120|1|1|1|0.5|0.33|3|204|120 |
| chr1_3 | exon | 25024129 | 25024388 | 25024129 | ID=Msa0111330-mRNA-1:exon:8574;Parent=Msa0111330-mRNA-1 |
| chr1_3 | exon | 25027671 | 25027988 | 25027671 | ID=Msa0111330-mRNA-1:exon:8573;Parent=Msa0111330-mRNA-1 |
| chr1_3 | exon | 25028212 | 25028320 | 25028212 | ID=Msa0111330-mRNA-1:exon:8572;Parent=Msa0111330-mRNA-1 |
| chr1_3 | five_prime_UTR | 25028212 | 25028320 | 25028212 | ID=Msa0111330-mRNA-1:five_prime_utr;Parent=Msa0111330-mRNA-1 |
| chr1_3 | five_prime_UTR | 25027978 | 25027988 | 25027978 | ID=Msa0111330-mRNA-1:five_prime_utr;Parent=Msa0111330-mRNA-1 |
| chr1_3 | CDS | 25027671 | 25027977 | 25027671 | ID=Msa0111330-mRNA-1:cds;Parent=Msa0111330-mRNA-1 |
| chr1_3 | CDS | 25024333 | 25024388 | 25024333 | ID=Msa0111330-mRNA-1:cds;Parent=Msa0111330-mRNA-1 |
| chr1_3 | three_prime_UTR | 25024129 | 25024332 | 25024129 | ID=Msa0111330-mRNA-1:three_prime_utr;Parent=Msa0111330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
