Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0905990 | KEH25024.1 | 40.816 | 147 | 59 | 2 | 76 | 194 | 55 | 201 | 8.82e-23 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004540 | Msa0905990 | 0.803980 | 2.690284e-49 | -8.615850e-47 |
| Msa0007850 | Msa0905990 | 0.825092 | 5.660704e-54 | -8.615850e-47 |
| Msa0010490 | Msa0905990 | 0.818435 | 1.963480e-52 | -8.615850e-47 |
| Msa0010500 | Msa0905990 | 0.813172 | 2.928343e-51 | -8.615850e-47 |
| Msa0020390 | Msa0905990 | 0.804014 | 2.647385e-49 | -8.615850e-47 |
| Msa0065010 | Msa0905990 | 0.819724 | 9.992176e-53 | -8.615850e-47 |
| Msa0081210 | Msa0905990 | 0.805417 | 1.348517e-49 | -8.615850e-47 |
| Msa0097950 | Msa0905990 | 0.800192 | 1.617232e-48 | -8.615850e-47 |
| Msa0105520 | Msa0905990 | 0.821778 | 3.369508e-53 | -8.615850e-47 |
| Msa0111330 | Msa0905990 | 0.809135 | 2.197542e-50 | -8.615850e-47 |
| Msa0115370 | Msa0905990 | 0.801244 | 9.867174e-49 | -8.615850e-47 |
| Msa0603570 | Msa0905990 | 0.804547 | 2.050271e-49 | -8.615850e-47 |
| Msa0606810 | Msa0905990 | 0.807172 | 5.755379e-50 | -8.615850e-47 |
| Msa0609220 | Msa0905990 | 0.818766 | 1.651522e-52 | -8.615850e-47 |
| Msa0613970 | Msa0905990 | 0.804937 | 1.699322e-49 | -8.615850e-47 |
| Msa0615580 | Msa0905990 | 0.840541 | 8.172523e-58 | -8.615850e-47 |
| Msa0615680 | Msa0905990 | 0.846698 | 1.844096e-59 | -8.615850e-47 |
| Msa0644030 | Msa0905990 | 0.824598 | 7.401627e-54 | -8.615850e-47 |
| Msa0648940 | Msa0905990 | 0.804274 | 2.337477e-49 | -8.615850e-47 |
| Msa0659790 | Msa0905990 | 0.800606 | 1.332059e-48 | -8.615850e-47 |
| Msa0666230 | Msa0905990 | 0.819143 | 1.355799e-52 | -8.615850e-47 |
| Msa0669720 | Msa0905990 | 0.832132 | 1.125146e-55 | -8.615850e-47 |
| Msa0669760 | Msa0905990 | 0.802133 | 6.482546e-49 | -8.615850e-47 |
| Msa0687230 | Msa0905990 | 0.838702 | 2.457587e-57 | -8.615850e-47 |
| Msa0694990 | Msa0905990 | 0.823477 | 1.356484e-53 | -8.615850e-47 |
| Msa0707390 | Msa0905990 | 0.802965 | 4.367265e-49 | -8.615850e-47 |
| Msa0748920 | Msa0905990 | 0.816868 | 4.430464e-52 | -8.615850e-47 |
| Msa0751010 | Msa0905990 | 0.832904 | 7.245147e-56 | -8.615850e-47 |
| Msa0772770 | Msa0905990 | 0.814746 | 1.317120e-51 | -8.615850e-47 |
| Msa0794050 | Msa0905990 | 0.848040 | 7.894658e-60 | -8.615850e-47 |
| Msa0798810 | Msa0905990 | -0.800031 | 1.743766e-48 | -8.615850e-47 |
| Msa0800370 | Msa0905990 | 0.806025 | 1.004848e-49 | -8.615850e-47 |
| Msa0818770 | Msa0905990 | 0.873347 | 1.577743e-67 | -8.615850e-47 |
| Msa0826150 | Msa0905990 | 0.821843 | 3.254343e-53 | -8.615850e-47 |
| Msa0826500 | Msa0905990 | 0.832714 | 8.075977e-56 | -8.615850e-47 |
| Msa0833190 | Msa0905990 | -0.831025 | 2.109255e-55 | -8.615850e-47 |
| Msa0126880 | Msa0905990 | 0.836527 | 8.882370e-57 | -8.615850e-47 |
| Msa0127040 | Msa0905990 | 0.806487 | 8.031452e-50 | -8.615850e-47 |
| Msa0136120 | Msa0905990 | 0.809629 | 1.721963e-50 | -8.615850e-47 |
| Msa0146080 | Msa0905990 | 0.803648 | 3.154080e-49 | -8.615850e-47 |
| Msa0163040 | Msa0905990 | 0.806245 | 9.035004e-50 | -8.615850e-47 |
| Msa0171410 | Msa0905990 | 0.800697 | 1.276370e-48 | -8.615850e-47 |
| Msa0174000 | Msa0905990 | 0.806384 | 8.443972e-50 | -8.615850e-47 |
| Msa0183870 | Msa0905990 | 0.837437 | 5.200419e-57 | -8.615850e-47 |
| Msa0192640 | Msa0905990 | 0.818211 | 2.206485e-52 | -8.615850e-47 |
| Msa0193600 | Msa0905990 | 0.840924 | 6.484518e-58 | -8.615850e-47 |
| Msa0197530 | Msa0905990 | 0.817068 | 3.995235e-52 | -8.615850e-47 |
| Msa0231100 | Msa0905990 | 0.809361 | 1.965221e-50 | -8.615850e-47 |
| Msa0365860 | Msa0905990 | 0.850704 | 1.429729e-60 | -8.615850e-47 |
| Msa0370160 | Msa0905990 | -0.814203 | 1.736171e-51 | -8.615850e-47 |
| Msa0382370 | Msa0905990 | 0.803809 | 2.919698e-49 | -8.615850e-47 |
| Msa0384260 | Msa0905990 | -0.816526 | 5.283553e-52 | -8.615850e-47 |
| Msa0384670 | Msa0905990 | 0.835218 | 1.906659e-56 | -8.615850e-47 |
| Msa0419720 | Msa0905990 | 0.815690 | 8.122550e-52 | -8.615850e-47 |
| Msa0434570 | Msa0905990 | 0.814063 | 1.864339e-51 | -8.615850e-47 |
| Msa0434770 | Msa0905990 | 0.821145 | 4.717186e-53 | -8.615850e-47 |
| Msa0436200 | Msa0905990 | 0.839304 | 1.716994e-57 | -8.615850e-47 |
| Msa0437690 | Msa0905990 | -0.808120 | 3.621003e-50 | -8.615850e-47 |
| Msa0442310 | Msa0905990 | 0.805551 | 1.263955e-49 | -8.615850e-47 |
| Msa0443390 | Msa0905990 | 0.811304 | 7.486821e-51 | -8.615850e-47 |
| Msa0450480 | Msa0905990 | 0.832155 | 1.110872e-55 | -8.615850e-47 |
| Msa0472720 | Msa0905990 | 0.813191 | 2.899458e-51 | -8.615850e-47 |
| Msa0478580 | Msa0905990 | 0.827936 | 1.187729e-54 | -8.615850e-47 |
| Msa0239060 | Msa0905990 | 0.813161 | 2.945017e-51 | -8.615850e-47 |
| Msa0241830 | Msa0905990 | 0.830148 | 3.458058e-55 | -8.615850e-47 |
| Msa0244980 | Msa0905990 | 0.801477 | 8.840891e-49 | -8.615850e-47 |
| Msa0249580 | Msa0905990 | 0.811682 | 6.195353e-51 | -8.615850e-47 |
| Msa0262480 | Msa0905990 | 0.847208 | 1.337015e-59 | -8.615850e-47 |
| Msa0273650 | Msa0905990 | 0.841675 | 4.115262e-58 | -8.615850e-47 |
| Msa0275360 | Msa0905990 | 0.807778 | 4.279574e-50 | -8.615850e-47 |
| Msa0283420 | Msa0905990 | 0.804060 | 2.589945e-49 | -8.615850e-47 |
| Msa0296250 | Msa0905990 | 0.807635 | 4.590834e-50 | -8.615850e-47 |
| Msa0296790 | Msa0905990 | 0.806079 | 9.792807e-50 | -8.615850e-47 |
| Msa0296920 | Msa0905990 | 0.811921 | 5.495583e-51 | -8.615850e-47 |
| Msa0300350 | Msa0905990 | 0.829913 | 3.945580e-55 | -8.615850e-47 |
| Msa0304660 | Msa0905990 | 0.805822 | 1.108998e-49 | -8.615850e-47 |
| Msa0312910 | Msa0905990 | 0.802773 | 4.784535e-49 | -8.615850e-47 |
| Msa0313930 | Msa0905990 | 0.808414 | 3.133629e-50 | -8.615850e-47 |
| Msa0315850 | Msa0905990 | 0.812324 | 4.490485e-51 | -8.615850e-47 |
| Msa0322900 | Msa0905990 | 0.809887 | 1.514818e-50 | -8.615850e-47 |
| Msa0331700 | Msa0905990 | 0.804134 | 2.499019e-49 | -8.615850e-47 |
| Msa0335320 | Msa0905990 | -0.822667 | 2.095399e-53 | -8.615850e-47 |
| Msa0358120 | Msa0905990 | 0.814231 | 1.711450e-51 | -8.615850e-47 |
| Msa0509950 | Msa0905990 | -0.804586 | 2.012294e-49 | -8.615850e-47 |
| Msa0511770 | Msa0905990 | 0.832881 | 7.340948e-56 | -8.615850e-47 |
| Msa0513260 | Msa0905990 | 0.819833 | 9.436335e-53 | -8.615850e-47 |
| Msa0518030 | Msa0905990 | 0.806180 | 9.321085e-50 | -8.615850e-47 |
| Msa0524590 | Msa0905990 | 0.822360 | 2.470259e-53 | -8.615850e-47 |
| Msa0527020 | Msa0905990 | 0.813478 | 2.508498e-51 | -8.615850e-47 |
| Msa0540550 | Msa0905990 | 0.806196 | 9.252328e-50 | -8.615850e-47 |
| Msa0547990 | Msa0905990 | 0.837880 | 4.004102e-57 | -8.615850e-47 |
| Msa0550540 | Msa0905990 | 0.824262 | 8.879503e-54 | -8.615850e-47 |
| Msa0550570 | Msa0905990 | 0.830219 | 3.321590e-55 | -8.615850e-47 |
| Msa0869010 | Msa0905990 | 0.814485 | 1.504320e-51 | -8.615850e-47 |
| Msa0879850 | Msa0905990 | 0.816419 | 5.583327e-52 | -8.615850e-47 |
| Msa0892640 | Msa0905990 | 0.820582 | 6.356620e-53 | -8.615850e-47 |
| Msa0901110 | Msa0905990 | 0.808892 | 2.477041e-50 | -8.615850e-47 |
| Msa0903780 | Msa0905990 | 0.814297 | 1.654841e-51 | -8.615850e-47 |
| Msa0905750 | Msa0905990 | 0.804036 | 2.619395e-49 | -8.615850e-47 |
| Msa0905990 | Msa0913240 | 0.817112 | 3.905069e-52 | -8.615850e-47 |
| Msa0905990 | Msa0938010 | 0.957637 | 1.676780e-115 | -8.615850e-47 |
| Msa0905990 | Msa0942710 | 0.804998 | 1.650356e-49 | -8.615850e-47 |
| Msa0905990 | Msa0943170 | 0.807849 | 4.134262e-50 | -8.615850e-47 |
| Msa0905990 | Msa0943270 | 0.824435 | 8.084766e-54 | -8.615850e-47 |
| Msa0905990 | Msa0944200 | 0.830807 | 2.384753e-55 | -8.615850e-47 |
| Msa0905990 | Msa0944610 | 0.824951 | 6.110915e-54 | -8.615850e-47 |
| Msa0905990 | Msa0957450 | -0.809295 | 2.031160e-50 | -8.615850e-47 |
| Msa0905990 | Msa0973320 | 0.817079 | 3.972509e-52 | -8.615850e-47 |
| Msa0905990 | Msa0974950 | 0.806400 | 8.377750e-50 | -8.615850e-47 |
| Msa0905990 | Msa1034290 | 0.800135 | 1.661114e-48 | -8.615850e-47 |
| Msa0905990 | Msa1070390 | 0.837649 | 4.588227e-57 | -8.615850e-47 |
| Msa0905990 | Msa1071660 | 0.812715 | 3.687167e-51 | -8.615850e-47 |
| Msa0905990 | Msa1084500 | -0.808820 | 2.567091e-50 | -8.615850e-47 |
| Msa0905990 | Msa1113880 | 0.800646 | 1.307374e-48 | -8.615850e-47 |
| Msa0905990 | Msa1123350 | 0.811957 | 5.398097e-51 | -8.615850e-47 |
| Msa0905990 | Msa1125790 | -0.825806 | 3.834722e-54 | -8.615850e-47 |
| Msa0905990 | Msa1126850 | 0.813650 | 2.298811e-51 | -8.615850e-47 |
| Msa0905990 | Msa1127430 | 0.810482 | 1.127842e-50 | -8.615850e-47 |
| Msa0905990 | Msa1127540 | 0.814443 | 1.536566e-51 | -8.615850e-47 |
| Msa0905990 | Msa1127590 | 0.832892 | 7.291020e-56 | -8.615850e-47 |
| Msa0905990 | Msa1131560 | 0.816947 | 4.251121e-52 | -8.615850e-47 |
| Msa0905990 | Msa1132310 | 0.817706 | 2.869532e-52 | -8.615850e-47 |
| Msa0905990 | Msa1158230 | 0.832807 | 7.657113e-56 | -8.615850e-47 |
| Msa0905990 | Msa1158770 | 0.810903 | 9.142864e-51 | -8.615850e-47 |
| Msa0905990 | Msa1165780 | 0.844798 | 6.049369e-59 | -8.615850e-47 |
| Msa0905990 | Msa1166870 | 0.814681 | 1.361171e-51 | -8.615850e-47 |
| Msa0905990 | Msa1173900 | 0.860323 | 2.238100e-63 | -8.615850e-47 |
| Msa0905990 | Msa1179980 | 0.808372 | 3.199829e-50 | -8.615850e-47 |
| Msa0905990 | Msa1199290 | 0.803729 | 3.033834e-49 | -8.615850e-47 |
| Msa0905990 | Msa1200320 | 0.804715 | 1.891244e-49 | -8.615850e-47 |
| Msa0905990 | Msa1201810 | 0.801889 | 7.274654e-49 | -8.615850e-47 |
| Msa0905990 | Msa1201830 | 0.804508 | 2.089159e-49 | -8.615850e-47 |
| Msa0905990 | Msa1202580 | 0.820555 | 6.448396e-53 | -8.615850e-47 |
| Msa0905990 | Msa1205480 | 0.800644 | 1.308570e-48 | -8.615850e-47 |
| Msa0905990 | Msa1206650 | 0.822095 | 2.845479e-53 | -8.615850e-47 |
| Msa0905990 | Msa1210660 | -0.802076 | 6.661535e-49 | -8.615850e-47 |
| Msa0905990 | Msa1211830 | 0.840778 | 7.082104e-58 | -8.615850e-47 |
| Msa0905990 | Msa1226610 | 0.833850 | 4.208314e-56 | -8.615850e-47 |
| Msa0905990 | Msa1226720 | 0.801264 | 9.774331e-49 | -8.615850e-47 |
| Msa0905990 | Msa1253810 | 0.800945 | 1.135704e-48 | -8.615850e-47 |
| Msa0905990 | Msa1262890 | 0.800257 | 1.568816e-48 | -8.615850e-47 |
| Msa0905990 | Msa1265590 | 0.813649 | 2.300050e-51 | -8.615850e-47 |
| Msa0905990 | Msa1270620 | 0.823507 | 1.334859e-53 | -8.615850e-47 |
| Msa0905990 | Msa1270690 | 0.816391 | 5.666066e-52 | -8.615850e-47 |
| Msa0905990 | Msa1294960 | 0.802743 | 4.852728e-49 | -8.615850e-47 |
| Msa0905990 | Msa1296830 | 0.801121 | 1.045708e-48 | -8.615850e-47 |
| Msa0905990 | Msa1299700 | 0.822668 | 2.093943e-53 | -8.615850e-47 |
| Msa0905990 | Msa1303580 | 0.850742 | 1.394516e-60 | -8.615850e-47 |
| Msa0905990 | Msa1306990 | 0.806919 | 6.509334e-50 | -8.615850e-47 |
| Msa0905990 | Msa1323990 | 0.806238 | 9.064269e-50 | -8.615850e-47 |
| Msa0905990 | Msa1329450 | 0.806411 | 8.334337e-50 | -8.615850e-47 |
| Msa0905990 | Msa1332590 | 0.803579 | 3.258602e-49 | -8.615850e-47 |
| Msa0905990 | Msa1333970 | 0.808738 | 2.672500e-50 | -8.615850e-47 |
| Msa0905990 | Msa1336040 | 0.801864 | 7.362713e-49 | -8.615850e-47 |
| Msa0905990 | Msa1336560 | 0.805133 | 1.546243e-49 | -8.615850e-47 |
| Msa0905990 | Msa1343290 | 0.813515 | 2.461968e-51 | -8.615850e-47 |
| Msa0905990 | Msa1348650 | -0.835587 | 1.538094e-56 | -8.615850e-47 |
| Msa0905990 | Msa1351540 | 0.841133 | 5.716389e-58 | -8.615850e-47 |
| Msa0905990 | Msa1380970 | 0.801028 | 1.092134e-48 | -8.615850e-47 |
| Msa0905990 | Msa1381650 | 0.822858 | 1.891094e-53 | -8.615850e-47 |
| Msa0905990 | Msa1395730 | 0.801420 | 9.079474e-49 | -8.615850e-47 |
| Msa0905990 | Msa1401420 | 0.819835 | 9.428905e-53 | -8.615850e-47 |
| Msa0905990 | Msa1411950 | 0.809200 | 2.128388e-50 | -8.615850e-47 |
| Msa0905990 | Msa1412660 | 0.815506 | 8.929345e-52 | -8.615850e-47 |
| Msa0905990 | Msa1416370 | 0.824395 | 8.259512e-54 | -8.615850e-47 |
| Msa0905990 | Msa1421900 | 0.811569 | 6.557033e-51 | -8.615850e-47 |
| Msa0905990 | Msa1424350 | 0.816123 | 6.505026e-52 | -8.615850e-47 |
| Msa0905990 | Msa1433600 | 0.804685 | 1.918570e-49 | -8.615850e-47 |
| Msa0905990 | Msa1437270 | 0.804854 | 1.768538e-49 | -8.615850e-47 |
| Msa0905990 | Msa1447180 | 0.808209 | 3.465430e-50 | -8.615850e-47 |
| Msa0905990 | Msa1450720 | 0.813400 | 2.609316e-51 | -8.615850e-47 |
| Msa0905990 | Msa1454450 | 0.819346 | 1.218709e-52 | -8.615850e-47 |
| Msa0905990 | Msa1454680 | 0.828563 | 8.388607e-55 | -8.615850e-47 |
| Msa0905990 | Msa1457220 | 0.822298 | 2.553018e-53 | -8.615850e-47 |
| Msa0905990 | Msa1459960 | 0.840859 | 6.745366e-58 | -8.615850e-47 |
| Msa0905990 | Msa1462470 | 0.802366 | 5.804944e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0905990 | MtrunA17_Chr6g0468681 | 46.392 | 97 | 36 | 2 | 2 | 82 | 1 | 97 | 2.76e-19 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 51 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATAACACTCGACTGTTAA+AGG | 0.173463 | 6_2:+4457873 | None:intergenic |
| TCGCCATTGGAACGTGTTTC+CGG | 0.199168 | 6_2:+4458251 | None:intergenic |
| AATTTACCCATCATCATAAA+AGG | 0.231721 | 6_2:+4458020 | None:intergenic |
| TTAAAGGATGGTGGAAGGAG+GGG | 0.305387 | 6_2:-4458298 | Msa0905990:CDS |
| CTCACTGAGGAAAAGGTTAA+AGG | 0.307407 | 6_2:-4458314 | Msa0905990:CDS |
| AACAAATAAGAGATGGATCT+TGG | 0.327273 | 6_2:-4458168 | Msa0905990:CDS |
| GTCAAGAGAAAGCAAATTTA+CGG | 0.332482 | 6_2:-4458079 | Msa0905990:CDS |
| TCAATCAATCCAACCATAAC+TGG | 0.335455 | 6_2:+4458353 | None:intergenic |
| CATAACACTCGACTGTTAAA+GGG | 0.389314 | 6_2:+4457874 | None:intergenic |
| TCATATGTTTAATCCAGTTA+TGG | 0.410645 | 6_2:-4458366 | Msa0905990:CDS |
| TAAAGGATGGTGGAAGGAGG+GGG | 0.411581 | 6_2:-4458297 | Msa0905990:CDS |
| GCTTTCTCTTGACTACAATC+TGG | 0.415041 | 6_2:+4458089 | None:intergenic |
| GGTTAAAGGATGGTGGAAGG+AGG | 0.417552 | 6_2:-4458300 | Msa0905990:CDS |
| AGTAGGCTGGATAGATGTTC+CGG | 0.432114 | 6_2:-4458270 | Msa0905990:CDS |
| TTCAAGGCTCACTGAGGAAA+AGG | 0.447645 | 6_2:-4458321 | Msa0905990:CDS |
| GTTAAAGGATGGTGGAAGGA+GGG | 0.464998 | 6_2:-4458299 | Msa0905990:CDS |
| ATGATGGGTAAATTTAAAGA+TGG | 0.496580 | 6_2:-4458011 | Msa0905990:CDS |
| AAGAGATGGATCTTGGTTGA+AGG | 0.508170 | 6_2:-4458161 | Msa0905990:CDS |
| GATGTGAAATTGTCTTAATG+AGG | 0.509961 | 6_2:+4458042 | None:intergenic |
| ATGTTTAATCCAGTTATGGT+TGG | 0.517438 | 6_2:-4458362 | Msa0905990:CDS |
| TGATTGACACAAAACATTCA+AGG | 0.536208 | 6_2:-4458337 | Msa0905990:CDS |
| CTTCAGAAACGTATTGATGT+GGG | 0.540400 | 6_2:-4458131 | Msa0905990:CDS |
| GAAGTTTAACAAATAAGAGA+TGG | 0.544075 | 6_2:-4458175 | Msa0905990:CDS |
| GCTTCAGAAACGTATTGATG+TGG | 0.565440 | 6_2:-4458132 | Msa0905990:CDS |
| TGGCGAGAAAAGTGAGGGAA+TGG | 0.574001 | 6_2:-4458234 | Msa0905990:CDS |
| TGAATGCTCTCAGATTGTCC+TGG | 0.580896 | 6_2:+4458398 | None:intergenic |
| AGGAAAAGGTTAAAGGATGG+TGG | 0.583886 | 6_2:-4458307 | Msa0905990:CDS |
| ACGATGTCGGGATTAGAGAC+AGG | 0.585282 | 6_2:-4457912 | Msa0905990:CDS |
| AAAGGTTAAAGGATGGTGGA+AGG | 0.586600 | 6_2:-4458303 | Msa0905990:CDS |
| GTTCCGGAAACACGTTCCAA+TGG | 0.594759 | 6_2:-4458254 | Msa0905990:CDS |
| TCCAATGGCGAGAAAAGTGA+GGG | 0.612722 | 6_2:-4458239 | Msa0905990:CDS |
| TTCCAATGGCGAGAAAAGTG+AGG | 0.630676 | 6_2:-4458240 | Msa0905990:CDS |
| GTGAGGGAATGGTATTCGCG+TGG | 0.647327 | 6_2:-4458223 | Msa0905990:CDS |
| GTCACAGGAATTAATCAACC+AGG | 0.651057 | 6_2:-4458416 | Msa0905990:CDS |
| CTGAGGAAAAGGTTAAAGGA+TGG | 0.658281 | 6_2:-4458310 | Msa0905990:CDS |
| AAAACATTCAAGGCTCACTG+AGG | 0.736310 | 6_2:-4458327 | Msa0905990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGAACAAAATGTCAATTTT+AGG | - | chr6_2:4458320-4458339 | Msa0905990:CDS | 20.0% |
| !!! | TGAACAAAATGTCAATTTTA+GGG | - | chr6_2:4458321-4458340 | Msa0905990:CDS | 20.0% |
| !!! | TTAAAAAGCTCTGAAAATTT+AGG | + | chr6_2:4458358-4458377 | None:intergenic | 20.0% |
| ! | TCATATGTTTAATCCAGTTA+TGG | - | chr6_2:4457931-4457950 | Msa0905990:CDS | 25.0% |
| ! | GAAGTTTAACAAATAAGAGA+TGG | - | chr6_2:4458122-4458141 | Msa0905990:CDS | 25.0% |
| ! | AATTTACCCATCATCATAAA+AGG | + | chr6_2:4458280-4458299 | None:intergenic | 25.0% |
| !!! | ATGATGGGTAAATTTAAAGA+TGG | - | chr6_2:4458286-4458305 | Msa0905990:CDS | 25.0% |
| !! | AAATTGACATTTTGTTCATC+TGG | + | chr6_2:4458319-4458338 | None:intergenic | 25.0% |
| ATGTTTAATCCAGTTATGGT+TGG | - | chr6_2:4457935-4457954 | Msa0905990:CDS | 30.0% | |
| TGATTGACACAAAACATTCA+AGG | - | chr6_2:4457960-4457979 | Msa0905990:CDS | 30.0% | |
| AACAAATAAGAGATGGATCT+TGG | - | chr6_2:4458129-4458148 | Msa0905990:CDS | 30.0% | |
| ! | TATTGATGTGGGTTTTCTTT+TGG | - | chr6_2:4458177-4458196 | Msa0905990:CDS | 30.0% |
| GTCAAGAGAAAGCAAATTTA+CGG | - | chr6_2:4458218-4458237 | Msa0905990:CDS | 30.0% | |
| GATGTGAAATTGTCTTAATG+AGG | + | chr6_2:4458258-4458277 | None:intergenic | 30.0% | |
| ! | TTCACATCCTTTTATGATGA+TGG | - | chr6_2:4458270-4458289 | Msa0905990:CDS | 30.0% |
| ! | TCACATCCTTTTATGATGAT+GGG | - | chr6_2:4458271-4458290 | Msa0905990:CDS | 30.0% |
| !!! | TTTTAAGTTTTCGACGATGT+CGG | - | chr6_2:4458372-4458391 | Msa0905990:CDS | 30.0% |
| !!! | ATTTTAGGTTGGAATGTCAC+AGG | - | chr6_2:4457866-4457885 | Msa0905990:CDS | 35.0% |
| TCAATCAATCCAACCATAAC+TGG | + | chr6_2:4457947-4457966 | None:intergenic | 35.0% | |
| ! | CTTCAGAAACGTATTGATGT+GGG | - | chr6_2:4458166-4458185 | Msa0905990:CDS | 35.0% |
| ! | TTGACATTTTGTTCATCTGG+TGG | + | chr6_2:4458316-4458335 | None:intergenic | 35.0% |
| !!! | GTCAATTTTAGGGTTTTTGC+AGG | - | chr6_2:4458331-4458350 | Msa0905990:CDS | 35.0% |
| !! | TTTAAGTTTTCGACGATGTC+GGG | - | chr6_2:4458373-4458392 | Msa0905990:CDS | 35.0% |
| CATAACACTCGACTGTTAAA+GGG | + | chr6_2:4458426-4458445 | None:intergenic | 35.0% | |
| TCATAACACTCGACTGTTAA+AGG | + | chr6_2:4458427-4458446 | None:intergenic | 35.0% | |
| GTCACAGGAATTAATCAACC+AGG | - | chr6_2:4457881-4457900 | Msa0905990:CDS | 40.0% | |
| AAAACATTCAAGGCTCACTG+AGG | - | chr6_2:4457970-4457989 | Msa0905990:CDS | 40.0% | |
| CTCACTGAGGAAAAGGTTAA+AGG | - | chr6_2:4457983-4458002 | Msa0905990:CDS | 40.0% | |
| CTGAGGAAAAGGTTAAAGGA+TGG | - | chr6_2:4457987-4458006 | Msa0905990:CDS | 40.0% | |
| AGGAAAAGGTTAAAGGATGG+TGG | - | chr6_2:4457990-4458009 | Msa0905990:CDS | 40.0% | |
| !! | AAAGGTTAAAGGATGGTGGA+AGG | - | chr6_2:4457994-4458013 | Msa0905990:CDS | 40.0% |
| AAGAGATGGATCTTGGTTGA+AGG | - | chr6_2:4458136-4458155 | Msa0905990:CDS | 40.0% | |
| ! | GCTTCAGAAACGTATTGATG+TGG | - | chr6_2:4458165-4458184 | Msa0905990:CDS | 40.0% |
| GCTTTCTCTTGACTACAATC+TGG | + | chr6_2:4458211-4458230 | None:intergenic | 40.0% | |
| TGAATGCTCTCAGATTGTCC+TGG | + | chr6_2:4457902-4457921 | None:intergenic | 45.0% | |
| TTCAAGGCTCACTGAGGAAA+AGG | - | chr6_2:4457976-4457995 | Msa0905990:CDS | 45.0% | |
| !! | GTTAAAGGATGGTGGAAGGA+GGG | - | chr6_2:4457998-4458017 | Msa0905990:CDS | 45.0% |
| !! | TTAAAGGATGGTGGAAGGAG+GGG | - | chr6_2:4457999-4458018 | Msa0905990:CDS | 45.0% |
| AGTAGGCTGGATAGATGTTC+CGG | - | chr6_2:4458027-4458046 | Msa0905990:CDS | 45.0% | |
| TTCCAATGGCGAGAAAAGTG+AGG | - | chr6_2:4458057-4458076 | Msa0905990:CDS | 45.0% | |
| TCCAATGGCGAGAAAAGTGA+GGG | - | chr6_2:4458058-4458077 | Msa0905990:CDS | 45.0% | |
| !! | GGTTAAAGGATGGTGGAAGG+AGG | - | chr6_2:4457997-4458016 | Msa0905990:CDS | 50.0% |
| !! | TAAAGGATGGTGGAAGGAGG+GGG | - | chr6_2:4458000-4458019 | Msa0905990:CDS | 50.0% |
| GTTCCGGAAACACGTTCCAA+TGG | - | chr6_2:4458043-4458062 | Msa0905990:CDS | 50.0% | |
| TCGCCATTGGAACGTGTTTC+CGG | + | chr6_2:4458049-4458068 | None:intergenic | 50.0% | |
| !! | TCCCTCACTTTTCTCGCCAT+TGG | + | chr6_2:4458062-4458081 | None:intergenic | 50.0% |
| TGGCGAGAAAAGTGAGGGAA+TGG | - | chr6_2:4458063-4458082 | Msa0905990:CDS | 50.0% | |
| ACGATGTCGGGATTAGAGAC+AGG | - | chr6_2:4458385-4458404 | Msa0905990:CDS | 50.0% | |
| TGGAAGGAGGGGGACAAAGT+AGG | - | chr6_2:4458010-4458029 | Msa0905990:CDS | 55.0% | |
| GTGAGGGAATGGTATTCGCG+TGG | - | chr6_2:4458074-4458093 | Msa0905990:CDS | 55.0% | |
| AGGAGGGGGACAAAGTAGGC+TGG | - | chr6_2:4458014-4458033 | Msa0905990:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 4457857 | 4458462 | 4457857 | ID=Msa0905990;Name=Msa0905990 |
| chr6_2 | mRNA | 4457857 | 4458462 | 4457857 | ID=Msa0905990-mRNA-1;Parent=Msa0905990;Name=Msa0905990-mRNA-1;_AED=0.14;_eAED=0.18;_QI=0|-1|0|1|-1|1|1|0|201 |
| chr6_2 | exon | 4457857 | 4458462 | 4457857 | ID=Msa0905990-mRNA-1:exon:1294;Parent=Msa0905990-mRNA-1 |
| chr6_2 | CDS | 4457857 | 4458462 | 4457857 | ID=Msa0905990-mRNA-1:cds;Parent=Msa0905990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
