Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649060 | AES89724.2 | 93.529 | 170 | 11 | 0 | 1 | 170 | 1 | 170 | 1.87e-110 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649060 | sp|Q9P7W0|OPA3_SCHPO | 40.426 | 141 | 76 | 4 | 1 | 138 | 1 | 136 | 1.11e-20 | 87.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0625720 | Msa0649060 | 0.800631 | 1.316666e-48 | -8.615850e-47 |
| Msa0649060 | Msa0663390 | 0.803693 | 3.086304e-49 | -8.615850e-47 |
| Msa0649060 | Msa0861130 | 0.804988 | 1.658004e-49 | -8.615850e-47 |
| Msa0649060 | Msa1003620 | 0.814793 | 1.285833e-51 | -8.615850e-47 |
| Msa0649060 | Msa1046460 | 0.806175 | 9.345163e-50 | -8.615850e-47 |
| Msa0649060 | Msa1373030 | 0.801297 | 9.624420e-49 | -8.615850e-47 |
| Msa0481530 | Msa0649060 | 0.801898 | 7.246197e-49 | -8.615850e-47 |
| Msa0529890 | Msa0649060 | 0.803438 | 3.485766e-49 | -8.615850e-47 |
| Msa0585560 | Msa0649060 | 0.804935 | 1.701316e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649060 | MtrunA17_Chr4g0040661 | 93.529 | 170 | 11 | 0 | 1 | 170 | 1 | 170 | 1.72e-114 | 322 |
| Msa0649060 | MtrunA17_Chr2g0283001 | 62.581 | 155 | 58 | 0 | 3 | 157 | 1 | 155 | 4.68e-71 | 212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649060 | AT3G58150.1 | 56.593 | 182 | 61 | 3 | 3 | 166 | 13 | 194 | 2.69e-65 | 198 |
| Msa0649060 | AT1G28510.1 | 58.710 | 155 | 64 | 0 | 3 | 157 | 2 | 156 | 7.38e-65 | 196 |
Find 33 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATTCAGAGACGCATTTA+TGG | 0.220020 | 4_3:+55644259 | Msa0649060:CDS |
| AGTGGTAGTACTGCCATTTC+TGG | 0.222282 | 4_3:-55644100 | None:intergenic |
| CAAGCTGCTGCTGATCTTCT+TGG | 0.268050 | 4_3:+55644331 | Msa0649060:CDS |
| GGCTTCTTTCTTTAACCTAT+TGG | 0.279946 | 4_3:-55644170 | None:intergenic |
| TGATGAAACTGCAAAATTTC+GGG | 0.328644 | 4_3:-55644201 | None:intergenic |
| ATGATGAAACTGCAAAATTT+CGG | 0.349807 | 4_3:-55644202 | None:intergenic |
| GCAAAATTTCGGGTGGTATC+CGG | 0.390876 | 4_3:-55644191 | None:intergenic |
| GCTAGAGGGCGAGGGCTTAT+CGG | 0.399712 | 4_3:+55645780 | Msa0649060:CDS |
| TTCTTTAACCTATTGGCGAT+GGG | 0.438647 | 4_3:-55644163 | None:intergenic |
| AACTTCAGGCTCGGCAATGC+CGG | 0.440108 | 4_3:+55645810 | Msa0649060:CDS |
| TGCTAGATCAGAGGCAAGAA+AGG | 0.442914 | 4_3:+55645469 | Msa0649060:CDS |
| CCACTAGACAGTTCCAGAAA+TGG | 0.448564 | 4_3:+55644087 | Msa0649060:exon |
| CTAGGAGTGAAGAGTTGAGC+AGG | 0.459175 | 4_3:+55645712 | Msa0649060:CDS |
| TTTCTTTAACCTATTGGCGA+TGG | 0.462834 | 4_3:-55644164 | None:intergenic |
| TCGTCCTCTTAATGAAGAAA+AGG | 0.466525 | 4_3:+55644303 | Msa0649060:CDS |
| TATGCAAACCCATCGCCAAT+AGG | 0.471002 | 4_3:+55644155 | Msa0649060:CDS |
| TGAACAAAAGCTTCAAGAGA+TGG | 0.480689 | 4_3:+55645749 | Msa0649060:CDS |
| TAACATCTACCACAATCAAT+TGG | 0.498719 | 4_3:-55645853 | None:intergenic |
| ACTACGCAGACAAGAAATAC+AGG | 0.512240 | 4_3:+55645496 | Msa0649060:CDS |
| CTCTGCAGGCAATAAAGACT+AGG | 0.548763 | 4_3:+55645694 | Msa0649060:intron |
| TTTCATCATCAGCATTGCAC+AGG | 0.551582 | 4_3:+55644216 | Msa0649060:CDS |
| TTCTGGAACTGTCTAGTGGC+CGG | 0.565750 | 4_3:-55644083 | None:intergenic |
| AATCAAAATCCAATTGATTG+TGG | 0.577326 | 4_3:+55645844 | Msa0649060:exon |
| GTACTACCACTAGTTAAACT+AGG | 0.581095 | 4_3:+55644112 | Msa0649060:CDS |
| AATGCGTCTCTGAATTCTTG+TGG | 0.588548 | 4_3:-55644254 | None:intergenic |
| AATAGGTTAAAGAAAGAAGC+CGG | 0.595062 | 4_3:+55644172 | Msa0649060:CDS |
| GCATTGCACAGGCTAATCAC+AGG | 0.603375 | 4_3:+55644227 | Msa0649060:CDS |
| TAGGAGTGAAGAGTTGAGCA+GGG | 0.604569 | 4_3:+55645713 | Msa0649060:CDS |
| CCATTTCTGGAACTGTCTAG+TGG | 0.605272 | 4_3:-55644087 | None:intergenic |
| GCATAGAAGTGCTAGATCAG+AGG | 0.610969 | 4_3:+55645460 | Msa0649060:CDS |
| AGGAGCTGCTGTAATCTATG+AGG | 0.612315 | 4_3:+55645436 | Msa0649060:CDS |
| AGTGTTCCTAGTTTAACTAG+TGG | 0.629164 | 4_3:-55644118 | None:intergenic |
| TGAAACTGCAAAATTTCGGG+TGG | 0.670169 | 4_3:-55644198 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTAATTTCCTTTTATTT+AGG | + | chr4_3:55645409-55645428 | Msa0649060:intron | 10.0% |
| !!! | AATTTAATTTCCTTTTATTT+AGG | + | chr4_3:55645409-55645428 | Msa0649060:intron | 10.0% |
| !! | TTATTCTTTATTACAAAAAG+TGG | - | chr4_3:55645316-55645335 | None:intergenic | 15.0% |
| !!! | CTTTTTGTAATAAAGAATAA+TGG | + | chr4_3:55645316-55645335 | Msa0649060:intron | 15.0% |
| !! | TTATTCTTTATTACAAAAAG+TGG | - | chr4_3:55645316-55645335 | None:intergenic | 15.0% |
| !!! | CTTTTTGTAATAAAGAATAA+TGG | + | chr4_3:55645316-55645335 | Msa0649060:intron | 15.0% |
| !!! | TTCGTATTTATTTTCATACA+AGG | + | chr4_3:55644477-55644496 | Msa0649060:intron | 20.0% |
| !!! | TCGTATTTATTTTCATACAA+GGG | + | chr4_3:55644478-55644497 | Msa0649060:intron | 20.0% |
| !!! | ATTTGTAAGGTTTTAAATAC+GGG | - | chr4_3:55644943-55644962 | None:intergenic | 20.0% |
| !!! | CATTTGTAAGGTTTTAAATA+CGG | - | chr4_3:55644944-55644963 | None:intergenic | 20.0% |
| !!! | TCTGTGAATTTTATAAGAAA+TGG | + | chr4_3:55645243-55645262 | Msa0649060:intron | 20.0% |
| !!! | CTGTGAATTTTATAAGAAAT+GGG | + | chr4_3:55645244-55645263 | Msa0649060:intron | 20.0% |
| !!! | TTTTGATTTTATATCTTCAC+CGG | - | chr4_3:55645832-55645851 | None:intergenic | 20.0% |
| !!! | TTCGTATTTATTTTCATACA+AGG | + | chr4_3:55644477-55644496 | Msa0649060:intron | 20.0% |
| !!! | TCGTATTTATTTTCATACAA+GGG | + | chr4_3:55644478-55644497 | Msa0649060:intron | 20.0% |
| !!! | ATTTGTAAGGTTTTAAATAC+GGG | - | chr4_3:55644943-55644962 | None:intergenic | 20.0% |
| !!! | CATTTGTAAGGTTTTAAATA+CGG | - | chr4_3:55644944-55644963 | None:intergenic | 20.0% |
| !!! | TCTGTGAATTTTATAAGAAA+TGG | + | chr4_3:55645243-55645262 | Msa0649060:intron | 20.0% |
| !!! | CTGTGAATTTTATAAGAAAT+GGG | + | chr4_3:55645244-55645263 | Msa0649060:intron | 20.0% |
| !!! | TTTTGATTTTATATCTTCAC+CGG | - | chr4_3:55645832-55645851 | None:intergenic | 20.0% |
| ! | ATGATGAAACTGCAAAATTT+CGG | - | chr4_3:55644205-55644224 | None:intergenic | 25.0% |
| ! | AATATAAACAAACAGGTAGA+TGG | - | chr4_3:55644420-55644439 | None:intergenic | 25.0% |
| !!! | ATTTATTTTCATACAAGGGA+CGG | + | chr4_3:55644482-55644501 | Msa0649060:intron | 25.0% |
| ! | AAAGGAATATGAGATACTAT+TGG | + | chr4_3:55644687-55644706 | Msa0649060:intron | 25.0% |
| !! | ATTTTTCCTTTCCTTATGAA+CGG | + | chr4_3:55644733-55644752 | Msa0649060:intron | 25.0% |
| !! | CGTATTTAAAACCTTACAAA+TGG | + | chr4_3:55644942-55644961 | Msa0649060:intron | 25.0% |
| !!! | TAAGTTTTGTTCCATTTGTA+AGG | - | chr4_3:55644956-55644975 | None:intergenic | 25.0% |
| ! | AATCAAAATCCAATTGATTG+TGG | + | chr4_3:55645844-55645863 | Msa0649060:exon | 25.0% |
| ! | ATGATGAAACTGCAAAATTT+CGG | - | chr4_3:55644205-55644224 | None:intergenic | 25.0% |
| ! | AATATAAACAAACAGGTAGA+TGG | - | chr4_3:55644420-55644439 | None:intergenic | 25.0% |
| !!! | ATTTATTTTCATACAAGGGA+CGG | + | chr4_3:55644482-55644501 | Msa0649060:intron | 25.0% |
| ! | AAAGGAATATGAGATACTAT+TGG | + | chr4_3:55644687-55644706 | Msa0649060:intron | 25.0% |
| !! | ATTTTTCCTTTCCTTATGAA+CGG | + | chr4_3:55644733-55644752 | Msa0649060:intron | 25.0% |
| !! | CGTATTTAAAACCTTACAAA+TGG | + | chr4_3:55644942-55644961 | Msa0649060:intron | 25.0% |
| !!! | TAAGTTTTGTTCCATTTGTA+AGG | - | chr4_3:55644956-55644975 | None:intergenic | 25.0% |
| ! | AATCAAAATCCAATTGATTG+TGG | + | chr4_3:55645844-55645863 | Msa0649060:exon | 25.0% |
| AATAGGTTAAAGAAAGAAGC+CGG | + | chr4_3:55644172-55644191 | Msa0649060:CDS | 30.0% | |
| TGATGAAACTGCAAAATTTC+GGG | - | chr4_3:55644204-55644223 | None:intergenic | 30.0% | |
| ACAGGGTAATATAAACAAAC+AGG | - | chr4_3:55644427-55644446 | None:intergenic | 30.0% | |
| !! | TTTATTTTCATACAAGGGAC+GGG | + | chr4_3:55644483-55644502 | Msa0649060:intron | 30.0% |
| ACGGCTTAATTAAGTAATCA+TGG | + | chr4_3:55644529-55644548 | Msa0649060:intron | 30.0% | |
| TCTACTTGTATAGTGTTGTA+AGG | - | chr4_3:55644648-55644667 | None:intergenic | 30.0% | |
| ACAAGTAGAACACAAGAAAT+AGG | + | chr4_3:55644659-55644678 | Msa0649060:intron | 30.0% | |
| AAGTGAACTAATTCTCTTGT+TGG | + | chr4_3:55644975-55644994 | Msa0649060:intron | 30.0% | |
| AGTGAACTAATTCTCTTGTT+GGG | + | chr4_3:55644976-55644995 | Msa0649060:intron | 30.0% | |
| AGTTAGTTAGACTAAAGTGA+TGG | - | chr4_3:55645002-55645021 | None:intergenic | 30.0% | |
| TATAGATTGTCATGTGGTTA+GGG | - | chr4_3:55645126-55645145 | None:intergenic | 30.0% | |
| ATATAGATTGTCATGTGGTT+AGG | - | chr4_3:55645127-55645146 | None:intergenic | 30.0% | |
| ACAATCTATATCCACTTGTT+TGG | + | chr4_3:55645136-55645155 | Msa0649060:intron | 30.0% | |
| ! | AATTTTTCTCTTGTCATCTG+TGG | + | chr4_3:55645348-55645367 | Msa0649060:intron | 30.0% |
| !!! | TTTCCTTTTATTTAGGTTGC+AGG | + | chr4_3:55645416-55645435 | Msa0649060:intron | 30.0% |
| ! | AAGAAATACAGGTTGTCTTT+TGG | + | chr4_3:55645507-55645526 | Msa0649060:intron | 30.0% |
| ! | AGAAATACAGGTTGTCTTTT+GGG | + | chr4_3:55645508-55645527 | Msa0649060:intron | 30.0% |
| ! | CCTTGGGATTTAGAATAATT+TGG | - | chr4_3:55645653-55645672 | None:intergenic | 30.0% |
| CCAAATTATTCTAAATCCCA+AGG | + | chr4_3:55645650-55645669 | Msa0649060:intron | 30.0% | |
| !!! | TTATCGGCTTTTTTAACTTC+AGG | + | chr4_3:55645796-55645815 | Msa0649060:CDS | 30.0% |
| TAACATCTACCACAATCAAT+TGG | - | chr4_3:55645856-55645875 | None:intergenic | 30.0% | |
| AATAGGTTAAAGAAAGAAGC+CGG | + | chr4_3:55644172-55644191 | Msa0649060:CDS | 30.0% | |
| TGATGAAACTGCAAAATTTC+GGG | - | chr4_3:55644204-55644223 | None:intergenic | 30.0% | |
| ACAGGGTAATATAAACAAAC+AGG | - | chr4_3:55644427-55644446 | None:intergenic | 30.0% | |
| !! | TTTATTTTCATACAAGGGAC+GGG | + | chr4_3:55644483-55644502 | Msa0649060:intron | 30.0% |
| ACGGCTTAATTAAGTAATCA+TGG | + | chr4_3:55644529-55644548 | Msa0649060:intron | 30.0% | |
| TCTACTTGTATAGTGTTGTA+AGG | - | chr4_3:55644648-55644667 | None:intergenic | 30.0% | |
| ACAAGTAGAACACAAGAAAT+AGG | + | chr4_3:55644659-55644678 | Msa0649060:intron | 30.0% | |
| AAGTGAACTAATTCTCTTGT+TGG | + | chr4_3:55644975-55644994 | Msa0649060:intron | 30.0% | |
| AGTGAACTAATTCTCTTGTT+GGG | + | chr4_3:55644976-55644995 | Msa0649060:intron | 30.0% | |
| AGTTAGTTAGACTAAAGTGA+TGG | - | chr4_3:55645002-55645021 | None:intergenic | 30.0% | |
| TATAGATTGTCATGTGGTTA+GGG | - | chr4_3:55645126-55645145 | None:intergenic | 30.0% | |
| ATATAGATTGTCATGTGGTT+AGG | - | chr4_3:55645127-55645146 | None:intergenic | 30.0% | |
| ACAATCTATATCCACTTGTT+TGG | + | chr4_3:55645136-55645155 | Msa0649060:intron | 30.0% | |
| ! | AATTTTTCTCTTGTCATCTG+TGG | + | chr4_3:55645348-55645367 | Msa0649060:intron | 30.0% |
| !!! | TTTCCTTTTATTTAGGTTGC+AGG | + | chr4_3:55645416-55645435 | Msa0649060:intron | 30.0% |
| ! | AAGAAATACAGGTTGTCTTT+TGG | + | chr4_3:55645507-55645526 | Msa0649060:intron | 30.0% |
| ! | AGAAATACAGGTTGTCTTTT+GGG | + | chr4_3:55645508-55645527 | Msa0649060:intron | 30.0% |
| ! | CCTTGGGATTTAGAATAATT+TGG | - | chr4_3:55645653-55645672 | None:intergenic | 30.0% |
| CCAAATTATTCTAAATCCCA+AGG | + | chr4_3:55645650-55645669 | Msa0649060:intron | 30.0% | |
| !!! | TTATCGGCTTTTTTAACTTC+AGG | + | chr4_3:55645796-55645815 | Msa0649060:CDS | 30.0% |
| TAACATCTACCACAATCAAT+TGG | - | chr4_3:55645856-55645875 | None:intergenic | 30.0% | |
| GTACTACCACTAGTTAAACT+AGG | + | chr4_3:55644112-55644131 | Msa0649060:CDS | 35.0% | |
| AGTGTTCCTAGTTTAACTAG+TGG | - | chr4_3:55644121-55644140 | None:intergenic | 35.0% | |
| !!! | AGGAACACTTGTTTTGAGAA+CGG | + | chr4_3:55644132-55644151 | Msa0649060:CDS | 35.0% |
| TTCTTTAACCTATTGGCGAT+GGG | - | chr4_3:55644166-55644185 | None:intergenic | 35.0% | |
| TTTCTTTAACCTATTGGCGA+TGG | - | chr4_3:55644167-55644186 | None:intergenic | 35.0% | |
| GGCTTCTTTCTTTAACCTAT+TGG | - | chr4_3:55644173-55644192 | None:intergenic | 35.0% | |
| AGAATTCAGAGACGCATTTA+TGG | + | chr4_3:55644259-55644278 | Msa0649060:CDS | 35.0% | |
| TCGTCCTCTTAATGAAGAAA+AGG | + | chr4_3:55644303-55644322 | Msa0649060:CDS | 35.0% | |
| ! | ACAGCCTTTTCTTCATTAAG+AGG | - | chr4_3:55644310-55644329 | None:intergenic | 35.0% |
| AAGACAGAGAATTGTACACA+GGG | - | chr4_3:55644444-55644463 | None:intergenic | 35.0% | |
| AAAGACAGAGAATTGTACAC+AGG | - | chr4_3:55644445-55644464 | None:intergenic | 35.0% | |
| AAAACACAACACCGTTCATA+AGG | - | chr4_3:55644747-55644766 | None:intergenic | 35.0% | |
| !!! | GTTGTATCGACTTTTTGTCA+CGG | + | chr4_3:55644810-55644829 | Msa0649060:intron | 35.0% |
| ! | AACTGACTTAACGACAAACT+AGG | + | chr4_3:55645038-55645057 | Msa0649060:intron | 35.0% |
| AGTGGATATAGATTGTCATG+TGG | - | chr4_3:55645132-55645151 | None:intergenic | 35.0% | |
| TCATGAGATAACCAAACAAG+TGG | - | chr4_3:55645150-55645169 | None:intergenic | 35.0% | |
| !!! | CACTATTTTTGTATCTCTGC+AGG | + | chr4_3:55645680-55645699 | Msa0649060:intron | 35.0% |
| TGAACAAAAGCTTCAAGAGA+TGG | + | chr4_3:55645749-55645768 | Msa0649060:CDS | 35.0% | |
| !! | AGATGGAAAAACTTGCTAGA+GGG | + | chr4_3:55645766-55645785 | Msa0649060:CDS | 35.0% |
| GTACTACCACTAGTTAAACT+AGG | + | chr4_3:55644112-55644131 | Msa0649060:CDS | 35.0% | |
| AGTGTTCCTAGTTTAACTAG+TGG | - | chr4_3:55644121-55644140 | None:intergenic | 35.0% | |
| !!! | AGGAACACTTGTTTTGAGAA+CGG | + | chr4_3:55644132-55644151 | Msa0649060:CDS | 35.0% |
| TTCTTTAACCTATTGGCGAT+GGG | - | chr4_3:55644166-55644185 | None:intergenic | 35.0% | |
| TTTCTTTAACCTATTGGCGA+TGG | - | chr4_3:55644167-55644186 | None:intergenic | 35.0% | |
| GGCTTCTTTCTTTAACCTAT+TGG | - | chr4_3:55644173-55644192 | None:intergenic | 35.0% | |
| AGAATTCAGAGACGCATTTA+TGG | + | chr4_3:55644259-55644278 | Msa0649060:CDS | 35.0% | |
| TCGTCCTCTTAATGAAGAAA+AGG | + | chr4_3:55644303-55644322 | Msa0649060:CDS | 35.0% | |
| ! | ACAGCCTTTTCTTCATTAAG+AGG | - | chr4_3:55644310-55644329 | None:intergenic | 35.0% |
| AAGACAGAGAATTGTACACA+GGG | - | chr4_3:55644444-55644463 | None:intergenic | 35.0% | |
| AAAGACAGAGAATTGTACAC+AGG | - | chr4_3:55644445-55644464 | None:intergenic | 35.0% | |
| AAAACACAACACCGTTCATA+AGG | - | chr4_3:55644747-55644766 | None:intergenic | 35.0% | |
| !!! | GTTGTATCGACTTTTTGTCA+CGG | + | chr4_3:55644810-55644829 | Msa0649060:intron | 35.0% |
| ! | AACTGACTTAACGACAAACT+AGG | + | chr4_3:55645038-55645057 | Msa0649060:intron | 35.0% |
| AGTGGATATAGATTGTCATG+TGG | - | chr4_3:55645132-55645151 | None:intergenic | 35.0% | |
| TCATGAGATAACCAAACAAG+TGG | - | chr4_3:55645150-55645169 | None:intergenic | 35.0% | |
| !!! | CACTATTTTTGTATCTCTGC+AGG | + | chr4_3:55645680-55645699 | Msa0649060:intron | 35.0% |
| TGAACAAAAGCTTCAAGAGA+TGG | + | chr4_3:55645749-55645768 | Msa0649060:CDS | 35.0% | |
| !! | AGATGGAAAAACTTGCTAGA+GGG | + | chr4_3:55645766-55645785 | Msa0649060:CDS | 35.0% |
| TGAAACTGCAAAATTTCGGG+TGG | - | chr4_3:55644201-55644220 | None:intergenic | 40.0% | |
| TTTCATCATCAGCATTGCAC+AGG | + | chr4_3:55644216-55644235 | Msa0649060:CDS | 40.0% | |
| AATGCGTCTCTGAATTCTTG+TGG | - | chr4_3:55644257-55644276 | None:intergenic | 40.0% | |
| GTTCTGACTGTTTGAGGAAA+CGG | + | chr4_3:55644510-55644529 | Msa0649060:intron | 40.0% | |
| CACAAGAAATAGGCGATGAA+AGG | + | chr4_3:55644669-55644688 | Msa0649060:intron | 40.0% | |
| ACAACACCGTTCATAAGGAA+AGG | - | chr4_3:55644742-55644761 | None:intergenic | 40.0% | |
| ATGATGTGTCGCATTCGTAA+CGG | + | chr4_3:55644778-55644797 | Msa0649060:intron | 40.0% | |
| !! | GCATTCGTAACGGAGTTTTA+CGG | + | chr4_3:55644788-55644807 | Msa0649060:intron | 40.0% |
| ! | GACTTTTTGTCACGGTGTAA+CGG | + | chr4_3:55644818-55644837 | Msa0649060:intron | 40.0% |
| ! | ACTTTTTGTCACGGTGTAAC+GGG | + | chr4_3:55644819-55644838 | Msa0649060:intron | 40.0% |
| TTTCATCTCAGCCTGAAAAC+AGG | + | chr4_3:55644857-55644876 | Msa0649060:intron | 40.0% | |
| AGCCTGAAAACAGGTAAACA+CGG | + | chr4_3:55644866-55644885 | Msa0649060:intron | 40.0% | |
| AAAACAGGTAAACACGGCAT+CGG | + | chr4_3:55644872-55644891 | Msa0649060:intron | 40.0% | |
| ! | CCACCTATATCTTTTTGTCG+CGG | + | chr4_3:55644898-55644917 | Msa0649060:intron | 40.0% |
| ! | GTCTAACTAACTTGCCTAGT+CGG | + | chr4_3:55645010-55645029 | Msa0649060:intron | 40.0% |
| !! | CTGCTGTATGCAAAGCATTT+TGG | + | chr4_3:55645183-55645202 | Msa0649060:intron | 40.0% |
| GCTCCTGCAACCTAAATAAA+AGG | - | chr4_3:55645422-55645441 | None:intergenic | 40.0% | |
| ACTACGCAGACAAGAAATAC+AGG | + | chr4_3:55645496-55645515 | Msa0649060:CDS | 40.0% | |
| TTGGGTCTTTCTTCTCATTG+TGG | + | chr4_3:55645526-55645545 | Msa0649060:intron | 40.0% | |
| ! | TTGTGGACTATCTTTCTACG+AGG | + | chr4_3:55645543-55645562 | Msa0649060:intron | 40.0% |
| ! | TGTGGACTATCTTTCTACGA+GGG | + | chr4_3:55645544-55645563 | Msa0649060:intron | 40.0% |
| AAAATAGTGAGCACAGCCTT+GGG | - | chr4_3:55645669-55645688 | None:intergenic | 40.0% | |
| AAAAATAGTGAGCACAGCCT+TGG | - | chr4_3:55645670-55645689 | None:intergenic | 40.0% | |
| !! | GAGATGGAAAAACTTGCTAG+AGG | + | chr4_3:55645765-55645784 | Msa0649060:CDS | 40.0% |
| !!! | GGCTTTTTTAACTTCAGGCT+CGG | + | chr4_3:55645801-55645820 | Msa0649060:CDS | 40.0% |
| TGTGGTAGATGTTAGCATTG+CGG | + | chr4_3:55645862-55645881 | Msa0649060:three_prime_UTR | 40.0% | |
| TGAAACTGCAAAATTTCGGG+TGG | - | chr4_3:55644201-55644220 | None:intergenic | 40.0% | |
| TTTCATCATCAGCATTGCAC+AGG | + | chr4_3:55644216-55644235 | Msa0649060:CDS | 40.0% | |
| AATGCGTCTCTGAATTCTTG+TGG | - | chr4_3:55644257-55644276 | None:intergenic | 40.0% | |
| GTTCTGACTGTTTGAGGAAA+CGG | + | chr4_3:55644510-55644529 | Msa0649060:intron | 40.0% | |
| CACAAGAAATAGGCGATGAA+AGG | + | chr4_3:55644669-55644688 | Msa0649060:intron | 40.0% | |
| ACAACACCGTTCATAAGGAA+AGG | - | chr4_3:55644742-55644761 | None:intergenic | 40.0% | |
| ATGATGTGTCGCATTCGTAA+CGG | + | chr4_3:55644778-55644797 | Msa0649060:intron | 40.0% | |
| !! | GCATTCGTAACGGAGTTTTA+CGG | + | chr4_3:55644788-55644807 | Msa0649060:intron | 40.0% |
| ! | GACTTTTTGTCACGGTGTAA+CGG | + | chr4_3:55644818-55644837 | Msa0649060:intron | 40.0% |
| ! | ACTTTTTGTCACGGTGTAAC+GGG | + | chr4_3:55644819-55644838 | Msa0649060:intron | 40.0% |
| TTTCATCTCAGCCTGAAAAC+AGG | + | chr4_3:55644857-55644876 | Msa0649060:intron | 40.0% | |
| AGCCTGAAAACAGGTAAACA+CGG | + | chr4_3:55644866-55644885 | Msa0649060:intron | 40.0% | |
| AAAACAGGTAAACACGGCAT+CGG | + | chr4_3:55644872-55644891 | Msa0649060:intron | 40.0% | |
| ! | CCACCTATATCTTTTTGTCG+CGG | + | chr4_3:55644898-55644917 | Msa0649060:intron | 40.0% |
| ! | GTCTAACTAACTTGCCTAGT+CGG | + | chr4_3:55645010-55645029 | Msa0649060:intron | 40.0% |
| !! | CTGCTGTATGCAAAGCATTT+TGG | + | chr4_3:55645183-55645202 | Msa0649060:intron | 40.0% |
| GCTCCTGCAACCTAAATAAA+AGG | - | chr4_3:55645422-55645441 | None:intergenic | 40.0% | |
| ACTACGCAGACAAGAAATAC+AGG | + | chr4_3:55645496-55645515 | Msa0649060:CDS | 40.0% | |
| TTGGGTCTTTCTTCTCATTG+TGG | + | chr4_3:55645526-55645545 | Msa0649060:intron | 40.0% | |
| ! | TTGTGGACTATCTTTCTACG+AGG | + | chr4_3:55645543-55645562 | Msa0649060:intron | 40.0% |
| ! | TGTGGACTATCTTTCTACGA+GGG | + | chr4_3:55645544-55645563 | Msa0649060:intron | 40.0% |
| AAAATAGTGAGCACAGCCTT+GGG | - | chr4_3:55645669-55645688 | None:intergenic | 40.0% | |
| AAAAATAGTGAGCACAGCCT+TGG | - | chr4_3:55645670-55645689 | None:intergenic | 40.0% | |
| !! | GAGATGGAAAAACTTGCTAG+AGG | + | chr4_3:55645765-55645784 | Msa0649060:CDS | 40.0% |
| !!! | GGCTTTTTTAACTTCAGGCT+CGG | + | chr4_3:55645801-55645820 | Msa0649060:CDS | 40.0% |
| !! | CCATTTCTGGAACTGTCTAG+TGG | - | chr4_3:55644090-55644109 | None:intergenic | 45.0% |
| CCACTAGACAGTTCCAGAAA+TGG | + | chr4_3:55644087-55644106 | Msa0649060:exon | 45.0% | |
| ! | AGTGGTAGTACTGCCATTTC+TGG | - | chr4_3:55644103-55644122 | None:intergenic | 45.0% |
| TATGCAAACCCATCGCCAAT+AGG | + | chr4_3:55644155-55644174 | Msa0649060:CDS | 45.0% | |
| ! | GCAAAATTTCGGGTGGTATC+CGG | - | chr4_3:55644194-55644213 | None:intergenic | 45.0% |
| TTTCATACAAGGGACGGGTA+AGG | + | chr4_3:55644488-55644507 | Msa0649060:intron | 45.0% | |
| ! | GGTAAGGTTCTGACTGTTTG+AGG | + | chr4_3:55644504-55644523 | Msa0649060:intron | 45.0% |
| ! | TGCCGTGTTTACCTGTTTTC+AGG | - | chr4_3:55644871-55644890 | None:intergenic | 45.0% |
| CCGCGACAAAAAGATATAGG+TGG | - | chr4_3:55644901-55644920 | None:intergenic | 45.0% | |
| ! | AAGTCAGTTACATGCCGACT+AGG | - | chr4_3:55645027-55645046 | None:intergenic | 45.0% |
| CAAACTGCAGACTTCTTCCA+GGG | - | chr4_3:55645070-55645089 | None:intergenic | 45.0% | |
| TCAAACTGCAGACTTCTTCC+AGG | - | chr4_3:55645071-55645090 | None:intergenic | 45.0% | |
| GTTTGATCACTGCTTGACAG+AGG | + | chr4_3:55645085-55645104 | Msa0649060:intron | 45.0% | |
| CTGTCACAGTACGATACAAC+AGG | + | chr4_3:55645206-55645225 | Msa0649060:intron | 45.0% | |
| ACAGTACGATACAACAGGCT+TGG | + | chr4_3:55645211-55645230 | Msa0649060:intron | 45.0% | |
| AGGAGCTGCTGTAATCTATG+AGG | + | chr4_3:55645436-55645455 | Msa0649060:CDS | 45.0% | |
| !! | GCATAGAAGTGCTAGATCAG+AGG | + | chr4_3:55645460-55645479 | Msa0649060:CDS | 45.0% |
| TGCTAGATCAGAGGCAAGAA+AGG | + | chr4_3:55645469-55645488 | Msa0649060:CDS | 45.0% | |
| TCTTGCAGTCTGTTCATTGC+TGG | + | chr4_3:55645606-55645625 | Msa0649060:intron | 45.0% | |
| CTTGCAGTCTGTTCATTGCT+GGG | + | chr4_3:55645607-55645626 | Msa0649060:intron | 45.0% | |
| TTGCAGTCTGTTCATTGCTG+GGG | + | chr4_3:55645608-55645627 | Msa0649060:intron | 45.0% | |
| CTCTGCAGGCAATAAAGACT+AGG | + | chr4_3:55645694-55645713 | Msa0649060:intron | 45.0% | |
| TAGGAGTGAAGAGTTGAGCA+GGG | + | chr4_3:55645713-55645732 | Msa0649060:CDS | 45.0% | |
| !! | AAAAACTTGCTAGAGGGCGA+GGG | + | chr4_3:55645772-55645791 | Msa0649060:CDS | 45.0% |
| !! | CCATTTCTGGAACTGTCTAG+TGG | - | chr4_3:55644090-55644109 | None:intergenic | 45.0% |
| CCACTAGACAGTTCCAGAAA+TGG | + | chr4_3:55644087-55644106 | Msa0649060:exon | 45.0% | |
| ! | AGTGGTAGTACTGCCATTTC+TGG | - | chr4_3:55644103-55644122 | None:intergenic | 45.0% |
| TATGCAAACCCATCGCCAAT+AGG | + | chr4_3:55644155-55644174 | Msa0649060:CDS | 45.0% | |
| ! | GCAAAATTTCGGGTGGTATC+CGG | - | chr4_3:55644194-55644213 | None:intergenic | 45.0% |
| TTTCATACAAGGGACGGGTA+AGG | + | chr4_3:55644488-55644507 | Msa0649060:intron | 45.0% | |
| ! | GGTAAGGTTCTGACTGTTTG+AGG | + | chr4_3:55644504-55644523 | Msa0649060:intron | 45.0% |
| ! | TGCCGTGTTTACCTGTTTTC+AGG | - | chr4_3:55644871-55644890 | None:intergenic | 45.0% |
| CCGCGACAAAAAGATATAGG+TGG | - | chr4_3:55644901-55644920 | None:intergenic | 45.0% | |
| ! | AAGTCAGTTACATGCCGACT+AGG | - | chr4_3:55645027-55645046 | None:intergenic | 45.0% |
| CAAACTGCAGACTTCTTCCA+GGG | - | chr4_3:55645070-55645089 | None:intergenic | 45.0% | |
| TCAAACTGCAGACTTCTTCC+AGG | - | chr4_3:55645071-55645090 | None:intergenic | 45.0% | |
| GTTTGATCACTGCTTGACAG+AGG | + | chr4_3:55645085-55645104 | Msa0649060:intron | 45.0% | |
| CTGTCACAGTACGATACAAC+AGG | + | chr4_3:55645206-55645225 | Msa0649060:intron | 45.0% | |
| ACAGTACGATACAACAGGCT+TGG | + | chr4_3:55645211-55645230 | Msa0649060:intron | 45.0% | |
| AGGAGCTGCTGTAATCTATG+AGG | + | chr4_3:55645436-55645455 | Msa0649060:CDS | 45.0% | |
| !! | GCATAGAAGTGCTAGATCAG+AGG | + | chr4_3:55645460-55645479 | Msa0649060:CDS | 45.0% |
| TGCTAGATCAGAGGCAAGAA+AGG | + | chr4_3:55645469-55645488 | Msa0649060:CDS | 45.0% | |
| TCTTGCAGTCTGTTCATTGC+TGG | + | chr4_3:55645606-55645625 | Msa0649060:intron | 45.0% | |
| CTTGCAGTCTGTTCATTGCT+GGG | + | chr4_3:55645607-55645626 | Msa0649060:intron | 45.0% | |
| TTGCAGTCTGTTCATTGCTG+GGG | + | chr4_3:55645608-55645627 | Msa0649060:intron | 45.0% | |
| CTCTGCAGGCAATAAAGACT+AGG | + | chr4_3:55645694-55645713 | Msa0649060:intron | 45.0% | |
| TAGGAGTGAAGAGTTGAGCA+GGG | + | chr4_3:55645713-55645732 | Msa0649060:CDS | 45.0% | |
| !! | AAAAACTTGCTAGAGGGCGA+GGG | + | chr4_3:55645772-55645791 | Msa0649060:CDS | 45.0% |
| GCATTGCACAGGCTAATCAC+AGG | + | chr4_3:55644227-55644246 | Msa0649060:CDS | 50.0% | |
| CAAGCTGCTGCTGATCTTCT+TGG | + | chr4_3:55644331-55644350 | Msa0649060:CDS | 50.0% | |
| !! | TCACGGTGTAACGGGAGTTT+TGG | + | chr4_3:55644827-55644846 | Msa0649060:intron | 50.0% |
| CGGCCGCGACAAAAAGATAT+AGG | - | chr4_3:55644904-55644923 | None:intergenic | 50.0% | |
| TGCAGTCTGTTCATTGCTGG+GGG | + | chr4_3:55645609-55645628 | Msa0649060:intron | 50.0% | |
| CTAGGAGTGAAGAGTTGAGC+AGG | + | chr4_3:55645712-55645731 | Msa0649060:CDS | 50.0% | |
| !! | GAAAAACTTGCTAGAGGGCG+AGG | + | chr4_3:55645771-55645790 | Msa0649060:CDS | 50.0% |
| GCATTGCACAGGCTAATCAC+AGG | + | chr4_3:55644227-55644246 | Msa0649060:CDS | 50.0% | |
| CAAGCTGCTGCTGATCTTCT+TGG | + | chr4_3:55644331-55644350 | Msa0649060:CDS | 50.0% | |
| !! | TCACGGTGTAACGGGAGTTT+TGG | + | chr4_3:55644827-55644846 | Msa0649060:intron | 50.0% |
| CGGCCGCGACAAAAAGATAT+AGG | - | chr4_3:55644904-55644923 | None:intergenic | 50.0% | |
| TGCAGTCTGTTCATTGCTGG+GGG | + | chr4_3:55645609-55645628 | Msa0649060:intron | 50.0% | |
| CTAGGAGTGAAGAGTTGAGC+AGG | + | chr4_3:55645712-55645731 | Msa0649060:CDS | 50.0% | |
| !! | GAAAAACTTGCTAGAGGGCG+AGG | + | chr4_3:55645771-55645790 | Msa0649060:CDS | 50.0% |
| ! | ACAGGTAAACACGGCATCGG+TGG | + | chr4_3:55644875-55644894 | Msa0649060:intron | 55.0% |
| !! | TTTTGTCGCGGCCGTTTTCG+CGG | + | chr4_3:55644910-55644929 | Msa0649060:intron | 55.0% |
| GACAAACTAGGCAGACTCCC+TGG | + | chr4_3:55645050-55645069 | Msa0649060:intron | 55.0% | |
| GGTGAGCCACTGCAATTTGC+AGG | + | chr4_3:55645265-55645284 | Msa0649060:intron | 55.0% | |
| GAGCCACTGCAATTTGCAGG+TGG | + | chr4_3:55645268-55645287 | Msa0649060:intron | 55.0% | |
| CTGCCACCTGCAAATTGCAG+TGG | - | chr4_3:55645274-55645293 | None:intergenic | 55.0% | |
| AGGTGGCAGATGCTAACGCT+GGG | + | chr4_3:55645285-55645304 | Msa0649060:intron | 55.0% | |
| AGTCTGTTCATTGCTGGGGG+TGG | + | chr4_3:55645612-55645631 | Msa0649060:intron | 55.0% | |
| AACTTCAGGCTCGGCAATGC+CGG | + | chr4_3:55645810-55645829 | Msa0649060:CDS | 55.0% | |
| ! | ACAGGTAAACACGGCATCGG+TGG | + | chr4_3:55644875-55644894 | Msa0649060:intron | 55.0% |
| !! | TTTTGTCGCGGCCGTTTTCG+CGG | + | chr4_3:55644910-55644929 | Msa0649060:intron | 55.0% |
| GACAAACTAGGCAGACTCCC+TGG | + | chr4_3:55645050-55645069 | Msa0649060:intron | 55.0% | |
| GGTGAGCCACTGCAATTTGC+AGG | + | chr4_3:55645265-55645284 | Msa0649060:intron | 55.0% | |
| GAGCCACTGCAATTTGCAGG+TGG | + | chr4_3:55645268-55645287 | Msa0649060:intron | 55.0% | |
| CTGCCACCTGCAAATTGCAG+TGG | - | chr4_3:55645274-55645293 | None:intergenic | 55.0% | |
| AGGTGGCAGATGCTAACGCT+GGG | + | chr4_3:55645285-55645304 | Msa0649060:intron | 55.0% | |
| AGTCTGTTCATTGCTGGGGG+TGG | + | chr4_3:55645612-55645631 | Msa0649060:intron | 55.0% | |
| AACTTCAGGCTCGGCAATGC+CGG | + | chr4_3:55645810-55645829 | Msa0649060:CDS | 55.0% | |
| CGGGTCCGTTACCGCGAAAA+CGG | - | chr4_3:55644924-55644943 | None:intergenic | 60.0% | |
| CAGGTGGCAGATGCTAACGC+TGG | + | chr4_3:55645284-55645303 | Msa0649060:intron | 60.0% | |
| GCTAGAGGGCGAGGGCTTAT+CGG | + | chr4_3:55645780-55645799 | Msa0649060:CDS | 60.0% | |
| CGGGTCCGTTACCGCGAAAA+CGG | - | chr4_3:55644924-55644943 | None:intergenic | 60.0% | |
| CAGGTGGCAGATGCTAACGC+TGG | + | chr4_3:55645284-55645303 | Msa0649060:intron | 60.0% | |
| GCTAGAGGGCGAGGGCTTAT+CGG | + | chr4_3:55645780-55645799 | Msa0649060:CDS | 60.0% | |
| !! | CGCGGCCGTTTTCGCGGTAA+CGG | + | chr4_3:55644916-55644935 | Msa0649060:intron | 65.0% |
| GGGGGTGGAAGCAGCTGTAG+AGG | + | chr4_3:55645627-55645646 | Msa0649060:intron | 65.0% | |
| !! | CGCGGCCGTTTTCGCGGTAA+CGG | + | chr4_3:55644916-55644935 | Msa0649060:intron | 65.0% |
| GGGGGTGGAAGCAGCTGTAG+AGG | + | chr4_3:55645627-55645646 | Msa0649060:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 55644085 | 55645882 | 55644085 | ID=Msa0649060;Name=Msa0649060 |
| chr4_3 | mRNA | 55644085 | 55645882 | 55644085 | ID=Msa0649060-mRNA-1;Parent=Msa0649060;Name=Msa0649060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=21|1|1|1|1|1|3|22|170 |
| chr4_3 | exon | 55644085 | 55644372 | 55644085 | ID=Msa0649060-mRNA-1:exon:14248;Parent=Msa0649060-mRNA-1 |
| chr4_3 | exon | 55645431 | 55645517 | 55645431 | ID=Msa0649060-mRNA-1:exon:14249;Parent=Msa0649060-mRNA-1 |
| chr4_3 | exon | 55645702 | 55645882 | 55645702 | ID=Msa0649060-mRNA-1:exon:14250;Parent=Msa0649060-mRNA-1 |
| chr4_3 | five_prime_UTR | 55644085 | 55644105 | 55644085 | ID=Msa0649060-mRNA-1:five_prime_utr;Parent=Msa0649060-mRNA-1 |
| chr4_3 | CDS | 55644106 | 55644372 | 55644106 | ID=Msa0649060-mRNA-1:cds;Parent=Msa0649060-mRNA-1 |
| chr4_3 | CDS | 55645431 | 55645517 | 55645431 | ID=Msa0649060-mRNA-1:cds;Parent=Msa0649060-mRNA-1 |
| chr4_3 | CDS | 55645702 | 55645860 | 55645702 | ID=Msa0649060-mRNA-1:cds;Parent=Msa0649060-mRNA-1 |
| chr4_3 | three_prime_UTR | 55645861 | 55645882 | 55645861 | ID=Msa0649060-mRNA-1:three_prime_utr;Parent=Msa0649060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
