AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0481530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481530 MtrunA17_Chr4g0001231 97.129 209 6 0 1 209 418 626 5.47e-145 417
Msa0481530 MtrunA17_Chr4g0070931 86.190 210 27 2 1 208 420 629 8.86e-125 366
Msa0481530 MtrunA17_Chr4g0074301 85.714 210 28 2 1 208 420 629 7.14e-122 358
Msa0481530 MtrunA17_Chr3g0111661 49.268 205 102 1 1 205 435 637 8.59e-64 208
Msa0481530 MtrunA17_Chr4g0071151 45.794 214 97 3 12 207 39 251 3.06e-60 189
Msa0481530 MtrunA17_Chr5g0435301 48.558 208 105 1 1 208 915 1120 7.11e-60 202
Msa0481530 MtrunA17_Chr3g0111741 51.196 209 98 4 1 208 133 338 3.01e-58 187
Msa0481530 MtrunA17_Chr2g0328231 44.340 212 101 4 1 197 145 354 3.09e-51 169
Msa0481530 MtrunA17_Chr2g0328251 46.919 211 97 3 1 197 473 682 3.44e-49 170
Msa0481530 MtrunA17_Chr2g0328241 48.276 174 74 3 39 197 494 666 6.52e-46 160
Msa0481530 MtrunA17_Chr4g0024031 45.909 220 103 3 1 207 452 668 1.64e-44 157
Msa0481530 MtrunA17_Chr3g0111731 42.381 210 110 4 1 209 16 215 8.76e-42 141
Msa0481530 MtrunA17_Chr2g0327251 44.286 210 84 4 1 197 367 556 1.40e-40 145
Msa0481530 MtrunA17_Chr4g0074271 77.215 79 15 1 122 200 375 450 2.15e-33 124
Msa0481530 MtrunA17_Chr3g0111691 53.165 79 36 1 130 208 13 90 3.09e-21 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0481530 AT1G15910.1 61.836 207 78 1 1 207 428 633 7.68e-83 258
Msa0481530 AT4G00380.2 58.937 207 84 1 1 207 401 606 2.23e-79 248
Msa0481530 AT4G00380.1 58.937 207 84 1 1 207 429 634 2.63e-79 249
Msa0481530 AT4G00380.3 58.937 207 84 1 1 207 429 634 2.63e-79 249
Msa0481530 AT3G48670.2 47.619 210 104 3 1 208 440 645 2.61e-54 183
Msa0481530 AT3G48670.1 47.619 210 104 3 1 208 440 645 2.61e-54 183
Msa0481530 AT3G48670.3 47.619 210 104 3 1 208 440 645 2.61e-54 183
Msa0481530 AT1G80790.1 53.589 209 94 3 1 208 428 634 4.41e-53 180
Msa0481530 AT1G80790.2 53.589 209 94 3 1 208 428 634 4.41e-53 180
Msa0481530 AT3G29375.3 44.554 202 106 2 7 208 32 227 2.52e-50 163
Msa0481530 AT1G13790.2 50.000 200 96 2 1 198 527 724 3.72e-50 173
Msa0481530 AT1G13790.1 50.000 200 96 2 1 198 527 724 3.72e-50 173
Msa0481530 AT4G01780.1 43.333 210 101 3 1 208 277 470 4.65e-49 166
Msa0481530 AT3G29375.1 44.776 201 105 2 7 207 155 349 5.03e-49 163
Msa0481530 AT3G12550.5 45.361 194 101 2 12 204 444 633 2.63e-45 159
Msa0481530 AT3G12550.4 45.128 195 101 2 12 204 444 634 1.39e-44 157
Msa0481530 AT3G12550.2 45.128 195 101 2 12 204 444 634 1.39e-44 157
Msa0481530 AT3G12550.1 45.128 195 101 2 12 204 444 634 1.39e-44 157
Msa0481530 AT5G59390.2 38.426 216 119 7 1 207 341 551 7.99e-34 127
Msa0481530 AT5G59390.4 38.426 216 119 7 1 207 341 551 7.99e-34 127
Msa0481530 AT5G59390.3 38.426 216 119 7 1 207 341 551 7.99e-34 127
Msa0481530 AT5G59390.1 38.426 216 119 7 1 207 346 556 9.14e-34 126
Msa0481530 AT5G59390.5 38.426 216 119 7 1 207 346 556 9.14e-34 126
Msa0481530 AT4G01180.1 38.261 230 107 10 1 207 336 553 4.46e-29 113
Msa0481530 AT3G29375.2 41.406 128 68 3 7 134 32 152 2.21e-20 84.7
Msa0481530 AT3G12550.3 40.351 114 64 1 12 125 444 553 1.11e-18 84.0
Msa0481530 AT2G16490.1 43.243 74 42 0 134 207 75 148 2.88e-16 73.9

Find 157 sgRNAs with CRISPR-Local

Find 311 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTGTAACCACTTTAAA+AGG 0.096361 3_3:+87688690 None:intergenic
CAACTGAAGGATCTTGTTTA+AGG 0.147603 3_3:+87689432 None:intergenic
CTGTTGAGCTTTGCTCTTTA+TGG 0.185569 3_3:-87688743 Msa0481530:CDS
CTTGGTGCCAATATTAGTTT+TGG 0.243764 3_3:+87688845 None:intergenic
GGAAGACAAAATAGAAAGTT+TGG 0.287888 3_3:-87689270 Msa0481530:CDS
ATAAGCAAATCACATGATTC+TGG 0.315654 3_3:-87691067 Msa0481530:five_prime_UTR
TACAAAGTGAAGAACAATAA+TGG 0.316359 3_3:-87691355 Msa0481530:five_prime_UTR
TTGGAATTCCATGGACTTGC+AGG 0.324273 3_3:-87690879 Msa0481530:five_prime_UTR
AATAGAAAGTTTGGAAGATA+TGG 0.336318 3_3:-87689261 Msa0481530:CDS
TTCTGATGAAGCTGGGATAA+AGG 0.336391 3_3:-87688766 Msa0481530:CDS
AAAGCAGGAATTCAAATATA+AGG 0.338005 3_3:-87691299 Msa0481530:five_prime_UTR
TGTGGAACTTCAAAGAAAAT+AGG 0.338398 3_3:-87688420 Msa0481530:CDS
ACTGGTGCCAAAACTAATAT+TGG 0.346735 3_3:-87688852 Msa0481530:CDS
AGAAAAGTTGAGTAATGAAT+TGG 0.351658 3_3:-87690413 Msa0481530:five_prime_UTR
GAAATAATTAGTCAGAATAT+AGG 0.353567 3_3:+87687344 None:intergenic
GATGAAATTGCAGAGGAAAA+TGG 0.359851 3_3:+87692157 None:intergenic
CCTGTAGTTCATCATTGCTT+TGG 0.360050 3_3:+87689204 None:intergenic
ATGGAAATTGAAGAACTAAA+AGG 0.360662 3_3:-87689376 Msa0481530:five_prime_UTR
CAGGACAGTTCAGAGATTTA+CGG 0.365740 3_3:-87690860 Msa0481530:five_prime_UTR
TGAGGAGGTACGAAGGATAT+TGG 0.370766 3_3:-87690443 Msa0481530:five_prime_UTR
CGATCAAGAGAGGCAGAAAC+TGG 0.373050 3_3:-87690329 Msa0481530:five_prime_UTR
ATGAAGTATGAAACTGTTAC+TGG 0.375794 3_3:-87687291 Msa0481530:three_prime_UTR
CCAGCCCTTAACTCTTCATA+TGG 0.378071 3_3:+87691382 None:intergenic
AGAAACCATATGAAGAGTTA+AGG 0.381900 3_3:-87691387 Msa0481530:five_prime_UTR
TCTGCTCCTTTGAGGCCAAC+TGG 0.386894 3_3:+87689636 None:intergenic
CCAGTGGTGGGTATACTGTT+TGG 0.391573 3_3:-87688447 Msa0481530:CDS
CAGTGGTGGGTATACTGTTT+GGG 0.392443 3_3:-87688446 Msa0481530:CDS
ACAAAGTGAAGAACAATAAT+GGG 0.394132 3_3:-87691354 Msa0481530:five_prime_UTR
ATATAGCTGTCCAACGAAAA+TGG 0.395372 3_3:+87687458 None:intergenic
GATCTGTTGCAGCATGCATC+TGG 0.396114 3_3:-87691277 Msa0481530:five_prime_UTR
TCAGAAAAGGAACGTGAAAA+TGG 0.399265 3_3:+87692189 None:intergenic
AGCTATCTTCTGCTCCTTTG+AGG 0.404036 3_3:+87689628 None:intergenic
GGCTGTTCATACGTTCTTGA+TGG 0.404762 3_3:-87691008 Msa0481530:five_prime_UTR
TTAGTACCTCACGCTTGTTT+AGG 0.407923 3_3:+87690353 None:intergenic
GTCAAGGTCTCCCATCCTCT+TGG 0.419346 3_3:+87688827 None:intergenic
CAGGCTTGTTGAAGAGCAAA+AGG 0.422308 3_3:-87689591 Msa0481530:intron
GAAGTACATCATATCTCAAT+CGG 0.422729 3_3:-87687497 Msa0481530:three_prime_UTR
CTTGTTTAGGTCTCTGCTCC+AGG 0.422956 3_3:+87690366 None:intergenic
TATTAAAACTCACTCCTCCT+AGG 0.429950 3_3:-87692237 Msa0481530:five_prime_UTR
CAGTTCAGAGATTTACGGTT+GGG 0.434103 3_3:-87690855 Msa0481530:five_prime_UTR
TATAATTGTCCAGGGTCGAT+TGG 0.450815 3_3:-87690815 Msa0481530:five_prime_UTR
ACTTCAACAATGACTGGAAT+GGG 0.453119 3_3:-87690961 Msa0481530:five_prime_UTR
GAAACCATATGAAGAGTTAA+GGG 0.456039 3_3:-87691386 Msa0481530:five_prime_UTR
CAGTTTCTGCCTCTCTTGAT+CGG 0.457451 3_3:+87690330 None:intergenic
CTGCAAGTCATGAAACATCT+TGG 0.459482 3_3:-87689347 Msa0481530:exon
GAAGATGATTATAATTGTCC+AGG 0.464276 3_3:-87690824 Msa0481530:five_prime_UTR
TCAAAGCCGGGCGAGGTACT+TGG 0.465289 3_3:+87691158 None:intergenic
TAGCTGATGAGAATGTCTTC+AGG 0.469727 3_3:-87689610 Msa0481530:five_prime_UTR
CAACTGGAGTGATTGATTCC+TGG 0.474236 3_3:+87689652 None:intergenic
GGTATACTGTTTGGGAGCTG+TGG 0.476632 3_3:-87688438 Msa0481530:CDS
TACAAAAGCTGAAGAAGGAA+TGG 0.478989 3_3:-87688528 Msa0481530:CDS
TAATATCAATCTCATTTGCC+AGG 0.479312 3_3:+87690706 None:intergenic
GGAAGAGATGAATTCAGAGT+TGG 0.479922 3_3:-87689291 Msa0481530:CDS
ATCACTCCAGTTGGCCTCAA+AGG 0.480055 3_3:-87689642 Msa0481530:five_prime_UTR
AAAACAGAAGGCAAACCATC+TGG 0.480375 3_3:-87691224 Msa0481530:five_prime_UTR
ATAATTGTCCAGGGTCGATT+GGG 0.481420 3_3:-87690814 Msa0481530:five_prime_UTR
TCCAAGTTGAGAACTACGTT+TGG 0.494414 3_3:-87691114 Msa0481530:five_prime_UTR
TTATAGACTTCAACAATGAC+TGG 0.495035 3_3:-87690967 Msa0481530:five_prime_UTR
ACAAAAGCTGAAGAAGGAAT+GGG 0.498002 3_3:-87688527 Msa0481530:CDS
ATCTCAACAAGATGCAGTAT+AGG 0.500867 3_3:-87690674 Msa0481530:five_prime_UTR
ATGGAAGCTCAGCTCAGAAA+AGG 0.500964 3_3:+87692176 None:intergenic
ATTAAAACTCACTCCTCCTA+GGG 0.504234 3_3:-87692236 Msa0481530:five_prime_UTR
TCTCTGTAACCACTTTAAAA+GGG 0.509171 3_3:+87688691 None:intergenic
ACTTAGGTGTCCGTATTGCT+CGG 0.510947 3_3:-87691329 Msa0481530:five_prime_UTR
AACTACGTTTGGCCGTGGAC+AGG 0.513586 3_3:-87691103 Msa0481530:five_prime_UTR
GAATTTAACGCTTATTGTCA+AGG 0.513944 3_3:-87689231 Msa0481530:CDS
TGAGCTTTGCTCTTTATGGC+AGG 0.521055 3_3:-87688739 Msa0481530:CDS
CTAATTTAAGTCTGAACTGA+AGG 0.521326 3_3:+87687394 None:intergenic
TTCAGTAGAAAGATAGAAGT+AGG 0.523707 3_3:-87687429 Msa0481530:three_prime_UTR
TAATATTGGCACCAAGAGGA+TGG 0.524177 3_3:-87688838 Msa0481530:CDS
TATGTCCTTGAGTAGGATGC+TGG 0.524242 3_3:-87690637 Msa0481530:five_prime_UTR
CCAAACAGTATACCCACCAC+TGG 0.525403 3_3:+87688447 None:intergenic
CCAAAGCAATGATGAACTAC+AGG 0.526461 3_3:-87689204 Msa0481530:CDS
CTTAAACAAGATCCTTCAGT+TGG 0.526740 3_3:-87689431 Msa0481530:five_prime_UTR
ACGTAGTTCTCAACTTGGAC+AGG 0.526836 3_3:+87691118 None:intergenic
GCCAAACGTAGTTCTCAACT+TGG 0.528155 3_3:+87691113 None:intergenic
TGAACTGTCCTGCAAGTCCA+TGG 0.528763 3_3:+87690871 None:intergenic
AAGAGAGGAGGATAGGCAAA+AGG 0.532512 3_3:-87688337 Msa0481530:intron
AAATAGCATTGTGGAAAACC+TGG 0.534545 3_3:-87690724 Msa0481530:five_prime_UTR
GACTTCAACAATGACTGGAA+TGG 0.535886 3_3:-87690962 Msa0481530:five_prime_UTR
TCAGCCTTCCTTTGTTGCGA+AGG 0.537542 3_3:+87690787 None:intergenic
CTTAGGTGTCCGTATTGCTC+GGG 0.537566 3_3:-87691328 Msa0481530:five_prime_UTR
ATCTGGAGTAGGCAAAGGTT+CGG 0.537904 3_3:-87691260 Msa0481530:five_prime_UTR
ATCATATCTCAATCGGGAGG+TGG 0.539320 3_3:-87687490 Msa0481530:three_prime_UTR
GATGGGAGACCTTGACCAGA+AGG 0.539667 3_3:-87688820 Msa0481530:CDS
GTTCATACGTTCTTGATGGA+TGG 0.543612 3_3:-87691004 Msa0481530:five_prime_UTR
TTCATTATAAACAAGTCAAG+TGG 0.544874 3_3:+87687309 None:intergenic
AAATGAGGAAGCTTGATACC+TGG 0.545605 3_3:-87690384 Msa0481530:five_prime_UTR
TCCAAACTACCAGAGAGAAA+AGG 0.547284 3_3:-87689461 Msa0481530:intron
TTGAGAACTACGTTTGGCCG+TGG 0.547439 3_3:-87691108 Msa0481530:five_prime_UTR
GAAACTACAAAAGCTGAAGA+AGG 0.547462 3_3:-87688533 Msa0481530:CDS
CCATATGAAGAGTTAAGGGC+TGG 0.547915 3_3:-87691382 Msa0481530:five_prime_UTR
AAACAGAAGCACAAAACAGA+AGG 0.549041 3_3:-87691236 Msa0481530:five_prime_UTR
TGTCCTTCCAGAAAGACTCC+AGG 0.550329 3_3:-87689670 Msa0481530:intron
ATGCAAGTGAGCTTGAGAAA+TGG 0.551886 3_3:-87690931 Msa0481530:five_prime_UTR
ACGACAGCTAAGGTCAAAGC+CGG 0.553034 3_3:+87691145 None:intergenic
ATTTGCTAAGTACAAACCAT+TGG 0.554128 3_3:-87691029 Msa0481530:five_prime_UTR
AGCAGACCAAGTACCTCGCC+CGG 0.554305 3_3:-87691164 Msa0481530:five_prime_UTR
ACTGGAAGAGGACAAGAAGA+AGG 0.555312 3_3:-87690311 Msa0481530:intron
TGATTCTGGATACTTGCAAA+AGG 0.555382 3_3:-87691053 Msa0481530:five_prime_UTR
AGTTCTCAACTTGGACAGGT+TGG 0.556864 3_3:+87691122 None:intergenic
GAAACTGTTACTGGTTATCA+CGG 0.561539 3_3:-87687282 Msa0481530:three_prime_UTR
GCTAAGGTCAAAGCCGGGCG+AGG 0.561717 3_3:+87691151 None:intergenic
AGAAGTGATCACTTATATTG+TGG 0.563683 3_3:-87688383 Msa0481530:CDS
TTGCAGCATGCATCTGGAGT+AGG 0.566883 3_3:-87691271 Msa0481530:five_prime_UTR
TAAGCGCAAGAGAGGAGGAT+AGG 0.567186 3_3:-87688344 Msa0481530:exon
CAGGAATCAATCACTCCAGT+TGG 0.571555 3_3:-87689651 Msa0481530:five_prime_UTR
ATGATGAACTACAGGAAGCT+CGG 0.574508 3_3:-87689196 Msa0481530:CDS
AGAACAATAATGGGACACTT+AGG 0.574673 3_3:-87691345 Msa0481530:five_prime_UTR
AAGTACATCATATCTCAATC+GGG 0.577063 3_3:-87687496 Msa0481530:three_prime_UTR
AATTGAATGCACGAAACCCT+AGG 0.578610 3_3:+87692220 None:intergenic
AAAACTTTGCAAGAGCCAGA+TGG 0.582131 3_3:+87691209 None:intergenic
AACGAGTACAACCCCAGTGG+TGG 0.585705 3_3:-87688460 Msa0481530:CDS
AATATTGGCACCAAGAGGAT+GGG 0.586149 3_3:-87688837 Msa0481530:CDS
GACAGGTTGGACGACAGCTA+AGG 0.586592 3_3:+87691135 None:intergenic
AGTACCTTCGCAACAAAGGA+AGG 0.587192 3_3:-87690791 Msa0481530:five_prime_UTR
TGGGAGTACCTTCGCAACAA+AGG 0.587751 3_3:-87690795 Msa0481530:five_prime_UTR
AGAGAGGCAGAAACTGGAAG+AGG 0.587763 3_3:-87690323 Msa0481530:five_prime_UTR
AAAATGTGAAGAACTCAGCT+TGG 0.590276 3_3:-87688716 Msa0481530:CDS
CAAACAGTATACCCACCACT+GGG 0.590617 3_3:+87688448 None:intergenic
AAGGTACTCCCAATCGACCC+TGG 0.592720 3_3:+87690806 None:intergenic
CTCCTCCAGCATCCTACTCA+AGG 0.596087 3_3:+87690632 None:intergenic
CAACTTAAGCGCAAGAGAGG+AGG 0.597370 3_3:-87688349 Msa0481530:CDS
GATCAGTGAGTCTGAGATCG+AGG 0.600157 3_3:-87691419 Msa0481530:five_prime_UTR
AAGCAACTTAAGCGCAAGAG+AGG 0.605662 3_3:-87688352 Msa0481530:CDS
CGACAGCTAAGGTCAAAGCC+GGG 0.609400 3_3:+87691146 None:intergenic
CATGCATCTGGAGTAGGCAA+AGG 0.611854 3_3:-87691265 Msa0481530:five_prime_UTR
AGAAGACTATGTCCTTGAGT+AGG 0.612892 3_3:-87690644 Msa0481530:five_prime_UTR
ACAGTTCAGAGATTTACGGT+TGG 0.615927 3_3:-87690856 Msa0481530:five_prime_UTR
GTTATCACGGTTATCGCATA+CGG 0.618789 3_3:-87687269 Msa0481530:three_prime_UTR
GAACTTCAAAGAAAATAGGA+AGG 0.621964 3_3:-87688416 Msa0481530:CDS
AGGTACTAACCGATCAAGAG+AGG 0.623269 3_3:-87690339 Msa0481530:five_prime_UTR
AAGATGATTATAATTGTCCA+GGG 0.627300 3_3:-87690823 Msa0481530:five_prime_UTR
CATGCAGCGTAAAGCTCGTG+AGG 0.627326 3_3:-87690461 Msa0481530:five_prime_UTR
TTGACAAGTATGCCTGTCCA+CGG 0.630837 3_3:+87691091 None:intergenic
AAACTACCAGAGAGAAAAGG+AGG 0.630982 3_3:-87689458 Msa0481530:intron
TGGTTTGAGACTAAACGTTG+TGG 0.637320 3_3:-87690911 Msa0481530:five_prime_UTR
GTCCTTGAGTAGGATGCTGG+AGG 0.639598 3_3:-87690634 Msa0481530:five_prime_UTR
GGGTTAAATGAAATGCTGAC+TGG 0.640070 3_3:-87688870 Msa0481530:CDS
TTCGCAACAAAGGAAGGCTG+AGG 0.640972 3_3:-87690785 Msa0481530:five_prime_UTR
AAGCTCGTGAGGAGGTACGA+AGG 0.645630 3_3:-87690450 Msa0481530:five_prime_UTR
AAGAACGTATGAACAGCCAA+TGG 0.648751 3_3:+87691013 None:intergenic
CTACCAGAGAGAAAAGGAGG+AGG 0.652051 3_3:-87689455 Msa0481530:intron
TCTTGGAGATCAAGATGATG+CGG 0.666276 3_3:-87689330 Msa0481530:CDS
ACGAGTACAACCCCAGTGGT+GGG 0.666856 3_3:-87688459 Msa0481530:CDS
CAAAAGCTGAAGAAGGAATG+GGG 0.672943 3_3:-87688526 Msa0481530:CDS
TCAAAGCAGAAATAGCATTG+TGG 0.673917 3_3:-87690733 Msa0481530:five_prime_UTR
AAACTAATATTGGCACCAAG+AGG 0.676823 3_3:-87688842 Msa0481530:CDS
TACATCATATCTCAATCGGG+AGG 0.678077 3_3:-87687493 Msa0481530:three_prime_UTR
GCAGCGTAAAGCTCGTGAGG+AGG 0.682044 3_3:-87690458 Msa0481530:five_prime_UTR
TTACAGCGATGAAATTGCAG+AGG 0.696307 3_3:+87692150 None:intergenic
CAGAGACCTAAACAAGCGTG+AGG 0.704526 3_3:-87690359 Msa0481530:five_prime_UTR
CTTGATGGATGGTAACTGCG+TGG 0.712841 3_3:-87690993 Msa0481530:five_prime_UTR
TGAATGCACGAAACCCTAGG+AGG 0.720425 3_3:+87692223 None:intergenic
TACAGAGAATGATAACCATG+TGG 0.726744 3_3:-87688676 Msa0481530:intron
AAACAGTATACCCACCACTG+GGG 0.786062 3_3:+87688449 None:intergenic
GTTAACGAGTACAACCCCAG+TGG 0.812173 3_3:-87688463 Msa0481530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATCAATGTAATATATA+TGG - chr3_3:87689515-87689534 Msa0481530:intron 10.0%
!!! GTGATATTAAATTTCATTTT+AGG - chr3_3:87687725-87687744 Msa0481530:intron 15.0%
!!! CAGTTAAAAATATTTGAAAT+GGG + chr3_3:87689204-87689223 None:intergenic 15.0%
!!! AGTAACATTTCTTTTTATAT+AGG + chr3_3:87690337-87690356 None:intergenic 15.0%
!!! TTTCAAATTTCTATTGTTTT+AGG - chr3_3:87690563-87690582 Msa0481530:intron 15.0%
!!! TTCAAATTTCTATTGTTTTA+GGG - chr3_3:87690564-87690583 Msa0481530:intron 15.0%
!! AAATAGTGTAATAATTAACA+TGG - chr3_3:87690854-87690873 Msa0481530:five_prime_UTR 15.0%
!!! GTTTATTTATTTTATTCCAA+TGG - chr3_3:87692214-87692233 Msa0481530:five_prime_UTR 15.0%
!! GAAGAATTCAAAGAAAAAAA+GGG + chr3_3:87687353-87687372 None:intergenic 20.0%
!! AGAAGAATTCAAAGAAAAAA+AGG + chr3_3:87687354-87687373 None:intergenic 20.0%
!! AACAAAAACAAATACTGTAT+TGG + chr3_3:87687449-87687468 None:intergenic 20.0%
!!! TAAGTTACATTTTAAAATGC+AGG - chr3_3:87687670-87687689 Msa0481530:intron 20.0%
!!! TTAAATTTCATTTTAGGTCA+TGG - chr3_3:87687731-87687750 Msa0481530:intron 20.0%
!!! AAAAAAATGAGACATTTTTG+TGG + chr3_3:87688959-87688978 None:intergenic 20.0%
!! GCAGTTAAAAATATTTGAAA+TGG + chr3_3:87689205-87689224 None:intergenic 20.0%
!!! CACTTTTTTATTCAAATCAA+GGG + chr3_3:87689381-87689400 None:intergenic 20.0%
!!! AGCACATATGTTTTTTTATA+TGG + chr3_3:87689663-87689682 None:intergenic 20.0%
!! AAATTTGAAAAAAATGAGAG+GGG + chr3_3:87690553-87690572 None:intergenic 20.0%
!! GAAATTTGAAAAAAATGAGA+GGG + chr3_3:87690554-87690573 None:intergenic 20.0%
!! AGAAATTTGAAAAAAATGAG+AGG + chr3_3:87690555-87690574 None:intergenic 20.0%
!!! TCAAATTTCTATTGTTTTAG+GGG - chr3_3:87690565-87690584 Msa0481530:intron 20.0%
!! AAATGTAACAACATTCTATT+TGG - chr3_3:87691346-87691365 Msa0481530:five_prime_UTR 20.0%
!! AAAGTTTATAAATGAAAAGC+TGG - chr3_3:87691420-87691439 Msa0481530:five_prime_UTR 20.0%
!!! TAATTTTGAAAAGCAAAAGA+TGG - chr3_3:87691751-87691770 Msa0481530:intron 20.0%
!!! AAACTTGTTTAGAATTTAAC+AGG + chr3_3:87691917-87691936 None:intergenic 20.0%
!! GAAATAATTAGTCAGAATAT+AGG + chr3_3:87692114-87692133 None:intergenic 20.0%
! AGTTGCTTATAAGCTAATTT+AGG - chr3_3:87687491-87687510 Msa0481530:three_prime_UTR 25.0%
!!! TACATTTTAAAATGCAGGAA+TGG - chr3_3:87687675-87687694 Msa0481530:intron 25.0%
!! AAAAAAAGCATAGCTAAGAA+TGG + chr3_3:87687815-87687834 None:intergenic 25.0%
! TACAAAGTGAAGAACAATAA+TGG - chr3_3:87688100-87688119 Msa0481530:intron 25.0%
! ACAAAGTGAAGAACAATAAT+GGG - chr3_3:87688101-87688120 Msa0481530:intron 25.0%
! AAAGCAGGAATTCAAATATA+AGG - chr3_3:87688156-87688175 Msa0481530:intron 25.0%
! AAGATGATTATAATTGTCCA+GGG - chr3_3:87688632-87688651 Msa0481530:intron 25.0%
!! TTTGCCTTATTGTATAGAAT+AGG - chr3_3:87688905-87688924 Msa0481530:intron 25.0%
!! TTGCCTTATTGTATAGAATA+GGG - chr3_3:87688906-87688925 Msa0481530:intron 25.0%
! AGAAAAGTTGAGTAATGAAT+TGG - chr3_3:87689042-87689061 Msa0481530:intron 25.0%
! ATGAATTGGATGAAAAAATG+AGG - chr3_3:87689056-87689075 Msa0481530:intron 25.0%
!!! GCACTTTTTTATTCAAATCA+AGG + chr3_3:87689382-87689401 None:intergenic 25.0%
! AAATGAATCCCAACTTTAAT+TGG - chr3_3:87689429-87689448 Msa0481530:five_prime_UTR 25.0%
!!! AAAAGCTTTTGATTATTGTG+AGG - chr3_3:87689492-87689511 Msa0481530:intron 25.0%
! ATTTCAACTCTACATAAATG+AGG + chr3_3:87689555-87689574 None:intergenic 25.0%
!! TTCCATTTCCAATTTTTGTT+TGG + chr3_3:87690065-87690084 None:intergenic 25.0%
! ATGGAAATTGAAGAACTAAA+AGG - chr3_3:87690079-87690098 Msa0481530:intron 25.0%
! AATAGAAAGTTTGGAAGATA+TGG - chr3_3:87690194-87690213 Msa0481530:intron 25.0%
!! AAATCTTATTTCCTAAAGAG+AGG + chr3_3:87690479-87690498 None:intergenic 25.0%
!! ATTACACTATTTCTCTATTG+AGG + chr3_3:87690846-87690865 None:intergenic 25.0%
! ACATGGTAATATTGTTGTAT+TGG - chr3_3:87690871-87690890 Msa0481530:five_prime_UTR 25.0%
!! TCACTGACTAAAATAGTAAT+TGG - chr3_3:87691202-87691221 Msa0481530:five_prime_UTR 25.0%
!! AACAACTTTTAGACTTTTGT+CGG - chr3_3:87691265-87691284 Msa0481530:five_prime_UTR 25.0%
! TAAGTTAACTAATAGCTACT+AGG - chr3_3:87691388-87691407 Msa0481530:five_prime_UTR 25.0%
! AAGTGGTTGTTAGAATTAAT+TGG - chr3_3:87691456-87691475 Msa0481530:five_prime_UTR 25.0%
! ACATGAAAGATATGTTCATA+TGG - chr3_3:87691504-87691523 Msa0481530:intron 25.0%
! TTACTAAAAGCTTTACCAAA+AGG - chr3_3:87691559-87691578 Msa0481530:intron 25.0%
!! TAAACTTTTGTCATTCCTTT+TGG + chr3_3:87691577-87691596 None:intergenic 25.0%
! ACAAAAGAGAGAAAAAAAAC+TGG + chr3_3:87691809-87691828 None:intergenic 25.0%
!!! CTTTTGTTTCTTACTCATAA+TGG - chr3_3:87691822-87691841 Msa0481530:intron 25.0%
! ATGGAAAAGTTTCTGATATT+TGG - chr3_3:87691841-87691860 Msa0481530:intron 25.0%
! TTCTAAACAAGTTTATCTTG+AGG - chr3_3:87691923-87691942 Msa0481530:intron 25.0%
!!! CTTTTTTATCTTTTGTCGAT+TGG - chr3_3:87692084-87692103 Msa0481530:intron 25.0%
! TTCATTATAAACAAGTCAAG+TGG + chr3_3:87692149-87692168 None:intergenic 25.0%
!!! TTGTTGCTGAGTTTTTTCTT+CGG - chr3_3:87687392-87687411 Msa0481530:three_prime_UTR 30.0%
! GTCATGGTTTATGTGATTTT+GGG - chr3_3:87687747-87687766 Msa0481530:intron 30.0%
! TCATGGTTTATGTGATTTTG+GGG - chr3_3:87687748-87687767 Msa0481530:intron 30.0%
!!! TAGCTATGCTTTTTTTGTGA+TGG - chr3_3:87687819-87687838 Msa0481530:intron 30.0%
!!! AGCTATGCTTTTTTTGTGAT+GGG - chr3_3:87687820-87687839 Msa0481530:intron 30.0%
!!! TTTTTTTGTGATGGGACTAA+GGG - chr3_3:87687828-87687847 Msa0481530:intron 30.0%
! ATTGTATGCCCTTTTTCTTT+TGG - chr3_3:87687926-87687945 Msa0481530:intron 30.0%
! TTGTATGCCCTTTTTCTTTT+GGG - chr3_3:87687927-87687946 Msa0481530:intron 30.0%
AGAAACCATATGAAGAGTTA+AGG - chr3_3:87688068-87688087 Msa0481530:intron 30.0%
GAAACCATATGAAGAGTTAA+GGG - chr3_3:87688069-87688088 Msa0481530:intron 30.0%
ATAAGCAAATCACATGATTC+TGG - chr3_3:87688388-87688407 Msa0481530:CDS 30.0%
! ATTTGCTAAGTACAAACCAT+TGG - chr3_3:87688426-87688445 Msa0481530:CDS 30.0%
TTATAGACTTCAACAATGAC+TGG - chr3_3:87688488-87688507 Msa0481530:CDS 30.0%
AAAAAAGGATTGGAATTCCA+TGG - chr3_3:87688567-87688586 Msa0481530:intron 30.0%
GAAGATGATTATAATTGTCC+AGG - chr3_3:87688631-87688650 Msa0481530:intron 30.0%
TAATATCAATCTCATTTGCC+AGG + chr3_3:87688752-87688771 None:intergenic 30.0%
! TGCCTTATTGTATAGAATAG+GGG - chr3_3:87688907-87688926 Msa0481530:intron 30.0%
TTCCCCTATTCTATACAATA+AGG + chr3_3:87688912-87688931 None:intergenic 30.0%
!!! TCATTTTTTTCTCAGAGTCA+AGG - chr3_3:87688969-87688988 Msa0481530:intron 30.0%
!!! CAAATTTTTTGCAAGGACAA+TGG + chr3_3:87689255-87689274 None:intergenic 30.0%
!!! GACAGATCAAATTTTTTGCA+AGG + chr3_3:87689262-87689281 None:intergenic 30.0%
ATTTGATCTGTCTTTCTTTG+TGG - chr3_3:87689270-87689289 Msa0481530:CDS 30.0%
GATTTGAATAACAATGTCCT+TGG - chr3_3:87689352-87689371 Msa0481530:exon 30.0%
TTCATTTAAAGAGAGTCAGT+AGG + chr3_3:87689416-87689435 None:intergenic 30.0%
! GCATTTTATATATTAGTGCG+TGG - chr3_3:87689604-87689623 Msa0481530:five_prime_UTR 30.0%
ACTGATGATTCAAAGTCTTA+AGG + chr3_3:87689726-87689745 None:intergenic 30.0%
! TTTTCATAACCAAGTGAGTA+GGG + chr3_3:87689894-87689913 None:intergenic 30.0%
TTAAAGACATTCACAATGGA+TGG + chr3_3:87689962-87689981 None:intergenic 30.0%
TCAGTTAAAGACATTCACAA+TGG + chr3_3:87689966-87689985 None:intergenic 30.0%
ACTAGATGCCAAACAAAAAT+TGG - chr3_3:87690054-87690073 Msa0481530:intron 30.0%
TGCCAAACAAAAATTGGAAA+TGG - chr3_3:87690060-87690079 Msa0481530:intron 30.0%
TGCGGCTATTAAGAAAAAAA+TGG - chr3_3:87690143-87690162 Msa0481530:intron 30.0%
GGAAGACAAAATAGAAAGTT+TGG - chr3_3:87690185-87690204 Msa0481530:intron 30.0%
GAATTTAACGCTTATTGTCA+AGG - chr3_3:87690224-87690243 Msa0481530:intron 30.0%
TGAAGAATACACGAAGATAA+AGG + chr3_3:87690382-87690401 None:intergenic 30.0%
TTCAAGATAACCAACTAACA+AGG - chr3_3:87690398-87690417 Msa0481530:five_prime_UTR 30.0%
! AGAAGAAAATCTTTTCTTGC+AGG + chr3_3:87690673-87690692 None:intergenic 30.0%
! TCTCTGTAACCACTTTAAAA+GGG + chr3_3:87690767-87690786 None:intergenic 30.0%
TTCTCTGTAACCACTTTAAA+AGG + chr3_3:87690768-87690787 None:intergenic 30.0%
! GTACTCGTTAACTTCTTTTA+AGG + chr3_3:87690984-87691003 None:intergenic 30.0%
TGTGGAACTTCAAAGAAAAT+AGG - chr3_3:87691035-87691054 Msa0481530:five_prime_UTR 30.0%
GAACTTCAAAGAAAATAGGA+AGG - chr3_3:87691039-87691058 Msa0481530:five_prime_UTR 30.0%
AGAAGTGATCACTTATATTG+TGG - chr3_3:87691072-87691091 Msa0481530:five_prime_UTR 30.0%
!! ATATCAATGCAGTTCTAAAC+AGG + chr3_3:87691169-87691188 None:intergenic 30.0%
! ACAACTTTTAGACTTTTGTC+GGG - chr3_3:87691266-87691285 Msa0481530:five_prime_UTR 30.0%
CAAATATGCTAACAAGTCTT+TGG - chr3_3:87691606-87691625 Msa0481530:intron 30.0%
TTATTAAATCGCTGCATTGA+CGG - chr3_3:87691676-87691695 Msa0481530:intron 30.0%
GAAGTACATCATATCTCAAT+CGG - chr3_3:87691958-87691977 Msa0481530:intron 30.0%
AAGTACATCATATCTCAATC+GGG - chr3_3:87691959-87691978 Msa0481530:intron 30.0%
TTCAGTAGAAAGATAGAAGT+AGG - chr3_3:87692026-87692045 Msa0481530:intron 30.0%
! ATAGAAGTAGGACATTTTCA+TGG - chr3_3:87692038-87692057 Msa0481530:intron 30.0%
CTAATTTAAGTCTGAACTGA+AGG + chr3_3:87692064-87692083 None:intergenic 30.0%
ATGAAGTATGAAACTGTTAC+TGG - chr3_3:87692164-87692183 Msa0481530:five_prime_UTR 30.0%
ATGTAAAAAAAGGCAACCAT+TGG + chr3_3:87692233-87692252 None:intergenic 30.0%
TATTAAAACTCACTCCTCCT+AGG - chr3_3:87687218-87687237 Msa0481530:three_prime_UTR 35.0%
ATTAAAACTCACTCCTCCTA+GGG - chr3_3:87687219-87687238 Msa0481530:three_prime_UTR 35.0%
TCAGAAAAGGAACGTGAAAA+TGG + chr3_3:87687269-87687288 None:intergenic 35.0%
GATGAAATTGCAGAGGAAAA+TGG + chr3_3:87687301-87687320 None:intergenic 35.0%
! GGTCATGGTTTATGTGATTT+TGG - chr3_3:87687746-87687765 Msa0481530:intron 35.0%
!!! CTTTTTTTGTGATGGGACTA+AGG - chr3_3:87687827-87687846 Msa0481530:intron 35.0%
AAATGCAGTCTGCTACTAAA+TGG + chr3_3:87687881-87687900 None:intergenic 35.0%
! AGAACAATAATGGGACACTT+AGG - chr3_3:87688110-87688129 Msa0481530:intron 35.0%
! TTTTTCTTTCCCGAGCAATA+CGG + chr3_3:87688139-87688158 None:intergenic 35.0%
! AAACAGAAGCACAAAACAGA+AGG - chr3_3:87688219-87688238 Msa0481530:intron 35.0%
TGATTCTGGATACTTGCAAA+AGG - chr3_3:87688402-87688421 Msa0481530:CDS 35.0%
ACTTCAACAATGACTGGAAT+GGG - chr3_3:87688494-87688513 Msa0481530:CDS 35.0%
GACTAAACGTTGTGGAAAAA+AGG - chr3_3:87688552-87688571 Msa0481530:CDS 35.0%
AACGTTGTGGAAAAAAGGAT+TGG - chr3_3:87688557-87688576 Msa0481530:CDS 35.0%
TCAAAGCAGAAATAGCATTG+TGG - chr3_3:87688722-87688741 Msa0481530:CDS 35.0%
AAATAGCATTGTGGAAAACC+TGG - chr3_3:87688731-87688750 Msa0481530:CDS 35.0%
ATCTCAACAAGATGCAGTAT+AGG - chr3_3:87688781-87688800 Msa0481530:CDS 35.0%
! CTTCACAATGCTTTTGTTGA+AGG - chr3_3:87688855-87688874 Msa0481530:CDS 35.0%
GATCAACCAAGAACATTAGT+AGG + chr3_3:87689299-87689318 None:intergenic 35.0%
GATTTGACTAACAATGTCCT+TGG - chr3_3:87689321-87689340 Msa0481530:CDS 35.0%
ATTCAAATCAAGAGCAACCA+AGG + chr3_3:87689341-87689360 None:intergenic 35.0%
! GCTTTTAGCATATAGACTCT+GGG + chr3_3:87689478-87689497 None:intergenic 35.0%
! AGCTTTTAGCATATAGACTC+TGG + chr3_3:87689479-87689498 None:intergenic 35.0%
GCATGTAAAGGTTAGAAAGT+GGG + chr3_3:87689695-87689714 None:intergenic 35.0%
AGCATGTAAAGGTTAGAAAG+TGG + chr3_3:87689696-87689715 None:intergenic 35.0%
TTCTAACCTTTACATGCTTG+AGG - chr3_3:87689698-87689717 Msa0481530:intron 35.0%
! CTTTTCATAACCAAGTGAGT+AGG + chr3_3:87689895-87689914 None:intergenic 35.0%
GTGAATGTCTTTAACTGATG+TGG - chr3_3:87689968-87689987 Msa0481530:intron 35.0%
! CAACTGAAGGATCTTGTTTA+AGG + chr3_3:87690026-87690045 None:intergenic 35.0%
CTTAAACAAGATCCTTCAGT+TGG - chr3_3:87690024-87690043 Msa0481530:intron 35.0%
ACACGAAGATAAAGGTTAGA+AGG + chr3_3:87690374-87690393 None:intergenic 35.0%
AATCTATGCACCTTGTTAGT+TGG + chr3_3:87690411-87690430 None:intergenic 35.0%
! TCTTATTTCCTAAAGAGAGG+TGG + chr3_3:87690476-87690495 None:intergenic 35.0%
GTTCTGCTGTGAATATATTG+TGG - chr3_3:87690512-87690531 Msa0481530:intron 35.0%
! ACTGGTGCCAAAACTAATAT+TGG - chr3_3:87690603-87690622 Msa0481530:five_prime_UTR 35.0%
!!! CTTGGTGCCAATATTAGTTT+TGG + chr3_3:87690613-87690632 None:intergenic 35.0%
AAACTAATATTGGCACCAAG+AGG - chr3_3:87690613-87690632 Msa0481530:five_prime_UTR 35.0%
! AGATTTTCTTCTGATGAAGC+TGG - chr3_3:87690681-87690700 Msa0481530:five_prime_UTR 35.0%
! GATTTTCTTCTGATGAAGCT+GGG - chr3_3:87690682-87690701 Msa0481530:five_prime_UTR 35.0%
AAAATGTGAAGAACTCAGCT+TGG - chr3_3:87690739-87690758 Msa0481530:five_prime_UTR 35.0%
TACAGAGAATGATAACCATG+TGG - chr3_3:87690779-87690798 Msa0481530:five_prime_UTR 35.0%
! AAAAACAGAGCATGGCTTTA+TGG + chr3_3:87690811-87690830 None:intergenic 35.0%
GAAACTACAAAAGCTGAAGA+AGG - chr3_3:87690922-87690941 Msa0481530:five_prime_UTR 35.0%
TACAAAAGCTGAAGAAGGAA+TGG - chr3_3:87690927-87690946 Msa0481530:five_prime_UTR 35.0%
ACAAAAGCTGAAGAAGGAAT+GGG - chr3_3:87690928-87690947 Msa0481530:five_prime_UTR 35.0%
TTAGTCAGTGAAGCTATCAA+TGG + chr3_3:87691193-87691212 None:intergenic 35.0%
ATGCAGCGATTTAATAACAC+AGG + chr3_3:87691673-87691692 None:intergenic 35.0%
! TATTAAATCGCTGCATTGAC+GGG - chr3_3:87691677-87691696 Msa0481530:intron 35.0%
CAAAATTATCCATGACAGAC+AGG + chr3_3:87691739-87691758 None:intergenic 35.0%
! GAAACTATGACCATTTTCGT+TGG - chr3_3:87691987-87692006 Msa0481530:intron 35.0%
ATATAGCTGTCCAACGAAAA+TGG + chr3_3:87692000-87692019 None:intergenic 35.0%
! GAAACTGTTACTGGTTATCA+CGG - chr3_3:87692173-87692192 Msa0481530:five_prime_UTR 35.0%
CCTGGCATACATGTAAAAAA+AGG + chr3_3:87692243-87692262 None:intergenic 35.0%
!!! CCTTTTTTTACATGTATGCC+AGG - chr3_3:87692240-87692259 Msa0481530:five_prime_UTR 35.0%
AATTGAATGCACGAAACCCT+AGG + chr3_3:87687238-87687257 None:intergenic 40.0%
TTACAGCGATGAAATTGCAG+AGG + chr3_3:87687308-87687327 None:intergenic 40.0%
GCACTCTCCCAAAAGAAAAA+GGG + chr3_3:87687937-87687956 None:intergenic 40.0%
TGCACTCTCCCAAAAGAAAA+AGG + chr3_3:87687938-87687957 None:intergenic 40.0%
! CATTTTTCGCACAGCTTCAA+TGG - chr3_3:87687988-87688007 Msa0481530:intron 40.0%
AAAACAGAAGGCAAACCATC+TGG - chr3_3:87688231-87688250 Msa0481530:intron 40.0%
AAAACTTTGCAAGAGCCAGA+TGG + chr3_3:87688249-87688268 None:intergenic 40.0%
! TGGCTCTTGCAAAGTTTTTG+AGG - chr3_3:87688251-87688270 Msa0481530:intron 40.0%
! TCCAAGTTGAGAACTACGTT+TGG - chr3_3:87688341-87688360 Msa0481530:exon 40.0%
AAGAACGTATGAACAGCCAA+TGG + chr3_3:87688445-87688464 None:intergenic 40.0%
GTTCATACGTTCTTGATGGA+TGG - chr3_3:87688451-87688470 Msa0481530:CDS 40.0%
GACTTCAACAATGACTGGAA+TGG - chr3_3:87688493-87688512 Msa0481530:CDS 40.0%
ATGCAAGTGAGCTTGAGAAA+TGG - chr3_3:87688524-87688543 Msa0481530:CDS 40.0%
! TGGTTTGAGACTAAACGTTG+TGG - chr3_3:87688544-87688563 Msa0481530:CDS 40.0%
CAGGACAGTTCAGAGATTTA+CGG - chr3_3:87688595-87688614 Msa0481530:intron 40.0%
ACAGTTCAGAGATTTACGGT+TGG - chr3_3:87688599-87688618 Msa0481530:intron 40.0%
CAGTTCAGAGATTTACGGTT+GGG - chr3_3:87688600-87688619 Msa0481530:intron 40.0%
TATAATTGTCCAGGGTCGAT+TGG - chr3_3:87688640-87688659 Msa0481530:intron 40.0%
ATAATTGTCCAGGGTCGATT+GGG - chr3_3:87688641-87688660 Msa0481530:intron 40.0%
AGAAGACTATGTCCTTGAGT+AGG - chr3_3:87688811-87688830 Msa0481530:CDS 40.0%
AGGGGAAAAAACACTTGCAT+TGG - chr3_3:87688925-87688944 Msa0481530:intron 40.0%
AAATGAGGAAGCTTGATACC+TGG - chr3_3:87689071-87689090 Msa0481530:intron 40.0%
TTAGTACCTCACGCTTGTTT+AGG + chr3_3:87689105-87689124 None:intergenic 40.0%
TGGTCTCCTACTAATGTTCT+TGG - chr3_3:87689290-87689309 Msa0481530:CDS 40.0%
ATTCAAATCAAGGGCAACCA+AGG + chr3_3:87689372-87689391 None:intergenic 40.0%
GTGGAAGGCCAATTAAAGTT+GGG + chr3_3:87689440-87689459 None:intergenic 40.0%
TGTGGAAGGCCAATTAAAGT+TGG + chr3_3:87689441-87689460 None:intergenic 40.0%
!! TAGACTCTGGGACAAATTAG+CGG + chr3_3:87689466-87689485 None:intergenic 40.0%
! ATTGATTCCTGGAGTCTTTC+TGG + chr3_3:87689795-87689814 None:intergenic 40.0%
TAGCTGATGAGAATGTCTTC+AGG - chr3_3:87689845-87689864 Msa0481530:intron 40.0%
TCCAAACTACCAGAGAGAAA+AGG - chr3_3:87689994-87690013 Msa0481530:intron 40.0%
! TCCTTTTCTCTCTGGTAGTT+TGG + chr3_3:87689998-87690017 None:intergenic 40.0%
AAACTACCAGAGAGAAAAGG+AGG - chr3_3:87689997-87690016 Msa0481530:intron 40.0%
!!! CTAGTTGCTTTTCCAACTGA+AGG + chr3_3:87690039-87690058 None:intergenic 40.0%
CTGCAAGTCATGAAACATCT+TGG - chr3_3:87690108-87690127 Msa0481530:intron 40.0%
TCTTGGAGATCAAGATGATG+CGG - chr3_3:87690125-87690144 Msa0481530:intron 40.0%
GGAAGAGATGAATTCAGAGT+TGG - chr3_3:87690164-87690183 Msa0481530:intron 40.0%
CCTGTAGTTCATCATTGCTT+TGG + chr3_3:87690254-87690273 None:intergenic 40.0%
CCAAAGCAATGATGAACTAC+AGG - chr3_3:87690251-87690270 Msa0481530:intron 40.0%
ATGATGAACTACAGGAAGCT+CGG - chr3_3:87690259-87690278 Msa0481530:intron 40.0%
GATTATCTCCACCTCTCTTT+AGG - chr3_3:87690465-87690484 Msa0481530:five_prime_UTR 40.0%
GGGTTAAATGAAATGCTGAC+TGG - chr3_3:87690585-87690604 Msa0481530:intron 40.0%
TAATATTGGCACCAAGAGGA+TGG - chr3_3:87690617-87690636 Msa0481530:five_prime_UTR 40.0%
AATATTGGCACCAAGAGGAT+GGG - chr3_3:87690618-87690637 Msa0481530:five_prime_UTR 40.0%
TCACAAAAACCTTCTGGTCA+AGG + chr3_3:87690647-87690666 None:intergenic 40.0%
AGGCATTCACAAAAACCTTC+TGG + chr3_3:87690653-87690672 None:intergenic 40.0%
TTCTGATGAAGCTGGGATAA+AGG - chr3_3:87690689-87690708 Msa0481530:five_prime_UTR 40.0%
CTGTTGAGCTTTGCTCTTTA+TGG - chr3_3:87690712-87690731 Msa0481530:five_prime_UTR 40.0%
GCTTTATGGTACATACCACA+TGG + chr3_3:87690797-87690816 None:intergenic 40.0%
CAAAAGCTGAAGAAGGAATG+GGG - chr3_3:87690929-87690948 Msa0481530:five_prime_UTR 40.0%
ATGTGCATATGACTGCAACT+GGG + chr3_3:87691243-87691262 None:intergenic 40.0%
CTGGATGATTGCAATTGAAG+TGG - chr3_3:87691439-87691458 Msa0481530:five_prime_UTR 40.0%
GCTTTGCACCTCACATATAT+TGG - chr3_3:87691643-87691662 Msa0481530:intron 40.0%
AGTTTATCTTGAGGCTTTGC+AGG - chr3_3:87691932-87691951 Msa0481530:intron 40.0%
GTTTATCTTGAGGCTTTGCA+GGG - chr3_3:87691933-87691952 Msa0481530:intron 40.0%
TACATCATATCTCAATCGGG+AGG - chr3_3:87691962-87691981 Msa0481530:intron 40.0%
GTTATCACGGTTATCGCATA+CGG - chr3_3:87692186-87692205 Msa0481530:five_prime_UTR 40.0%
ATGGAAGCTCAGCTCAGAAA+AGG + chr3_3:87687282-87687301 None:intergenic 45.0%
CCAGCCCTTAACTCTTCATA+TGG + chr3_3:87688076-87688095 None:intergenic 45.0%
CCATATGAAGAGTTAAGGGC+TGG - chr3_3:87688073-87688092 Msa0481530:intron 45.0%
ACTTAGGTGTCCGTATTGCT+CGG - chr3_3:87688126-87688145 Msa0481530:intron 45.0%
TTGCTCGGGAAAGAAAAAGC+AGG - chr3_3:87688141-87688160 Msa0481530:intron 45.0%
! ATCTGGAGTAGGCAAAGGTT+CGG - chr3_3:87688195-87688214 Msa0481530:intron 45.0%
AGTTCTCAACTTGGACAGGT+TGG + chr3_3:87688336-87688355 None:intergenic 45.0%
ACGTAGTTCTCAACTTGGAC+AGG + chr3_3:87688340-87688359 None:intergenic 45.0%
GCCAAACGTAGTTCTCAACT+TGG + chr3_3:87688345-87688364 None:intergenic 45.0%
TTGACAAGTATGCCTGTCCA+CGG + chr3_3:87688367-87688386 None:intergenic 45.0%
GGCTGTTCATACGTTCTTGA+TGG - chr3_3:87688447-87688466 Msa0481530:CDS 45.0%
TTGGAATTCCATGGACTTGC+AGG - chr3_3:87688576-87688595 Msa0481530:intron 45.0%
AGTACCTTCGCAACAAAGGA+AGG - chr3_3:87688664-87688683 Msa0481530:intron 45.0%
TATGTCCTTGAGTAGGATGC+TGG - chr3_3:87688818-87688837 Msa0481530:CDS 45.0%
! TGAGGAGGTACGAAGGATAT+TGG - chr3_3:87689012-87689031 Msa0481530:intron 45.0%
AGGTACTAACCGATCAAGAG+AGG - chr3_3:87689116-87689135 Msa0481530:intron 45.0%
CAGTTTCTGCCTCTCTTGAT+CGG + chr3_3:87689128-87689147 None:intergenic 45.0%
ACTGGAAGAGGACAAGAAGA+AGG - chr3_3:87689144-87689163 Msa0481530:intron 45.0%
!! AGACTCTGGGACAAATTAGC+GGG + chr3_3:87689465-87689484 None:intergenic 45.0%
AAGGCTCCTCAAGCATGTAA+AGG + chr3_3:87689707-87689726 None:intergenic 45.0%
ATTCCTGGAGTCTTTCTGGA+AGG + chr3_3:87689791-87689810 None:intergenic 45.0%
! CAACTGGAGTGATTGATTCC+TGG + chr3_3:87689806-87689825 None:intergenic 45.0%
CAGGAATCAATCACTCCAGT+TGG - chr3_3:87689804-87689823 Msa0481530:intron 45.0%
AGCTATCTTCTGCTCCTTTG+AGG + chr3_3:87689830-87689849 None:intergenic 45.0%
!! CAGGCTTGTTGAAGAGCAAA+AGG - chr3_3:87689864-87689883 Msa0481530:intron 45.0%
AAAGGTTTGCCCTACTCACT+TGG - chr3_3:87689882-87689901 Msa0481530:intron 45.0%
GGTGGAGATAATCTTCATGC+AGG + chr3_3:87690458-87690477 None:intergenic 45.0%
TGAGCTTTGCTCTTTATGGC+AGG - chr3_3:87690716-87690735 Msa0481530:five_prime_UTR 45.0%
!! AGCTTGGCACCCTTTTAAAG+TGG - chr3_3:87690755-87690774 Msa0481530:five_prime_UTR 45.0%
GCTACGCAAAAAACAGAGCA+TGG + chr3_3:87690819-87690838 None:intergenic 45.0%
AAACAGTATACCCACCACTG+GGG + chr3_3:87691009-87691028 None:intergenic 45.0%
CAAACAGTATACCCACCACT+GGG + chr3_3:87691010-87691029 None:intergenic 45.0%
!! CAGTGGTGGGTATACTGTTT+GGG - chr3_3:87691009-87691028 Msa0481530:five_prime_UTR 45.0%
AAGCAACTTAAGCGCAAGAG+AGG - chr3_3:87691103-87691122 Msa0481530:five_prime_UTR 45.0%
AAGAGAGGAGGATAGGCAAA+AGG - chr3_3:87691118-87691137 Msa0481530:five_prime_UTR 45.0%
CATGTGCATATGACTGCAAC+TGG + chr3_3:87691244-87691263 None:intergenic 45.0%
!! CAGGAGCACCAATATATGTG+AGG + chr3_3:87691654-87691673 None:intergenic 45.0%
GACAGACAGGAGCAATTGAA+AGG + chr3_3:87691726-87691745 None:intergenic 45.0%
TCAATTGCTCCTGTCTGTCA+TGG - chr3_3:87691727-87691746 Msa0481530:intron 45.0%
ATCATATCTCAATCGGGAGG+TGG - chr3_3:87691965-87691984 Msa0481530:intron 45.0%
TGAATGCACGAAACCCTAGG+AGG + chr3_3:87687235-87687254 None:intergenic 50.0%
! GATCAGTGAGTCTGAGATCG+AGG - chr3_3:87688036-87688055 Msa0481530:intron 50.0%
CTTAGGTGTCCGTATTGCTC+GGG - chr3_3:87688127-87688146 Msa0481530:intron 50.0%
GATCTGTTGCAGCATGCATC+TGG - chr3_3:87688178-87688197 Msa0481530:intron 50.0%
! TTGCAGCATGCATCTGGAGT+AGG - chr3_3:87688184-87688203 Msa0481530:intron 50.0%
! CATGCATCTGGAGTAGGCAA+AGG - chr3_3:87688190-87688209 Msa0481530:intron 50.0%
ACGACAGCTAAGGTCAAAGC+CGG + chr3_3:87688313-87688332 None:intergenic 50.0%
TTGAGAACTACGTTTGGCCG+TGG - chr3_3:87688347-87688366 Msa0481530:CDS 50.0%
! CTTGATGGATGGTAACTGCG+TGG - chr3_3:87688462-87688481 Msa0481530:CDS 50.0%
TGAACTGTCCTGCAAGTCCA+TGG + chr3_3:87688587-87688606 None:intergenic 50.0%
!! TGGGAGTACCTTCGCAACAA+AGG - chr3_3:87688660-87688679 Msa0481530:intron 50.0%
TCAGCCTTCCTTTGTTGCGA+AGG + chr3_3:87688671-87688690 None:intergenic 50.0%
TTCGCAACAAAGGAAGGCTG+AGG - chr3_3:87688670-87688689 Msa0481530:intron 50.0%
CTTGTTTAGGTCTCTGCTCC+AGG + chr3_3:87689092-87689111 None:intergenic 50.0%
CAGAGACCTAAACAAGCGTG+AGG - chr3_3:87689096-87689115 Msa0481530:intron 50.0%
CGATCAAGAGAGGCAGAAAC+TGG - chr3_3:87689126-87689145 Msa0481530:intron 50.0%
AGAGAGGCAGAAACTGGAAG+AGG - chr3_3:87689132-87689151 Msa0481530:intron 50.0%
!! ACAAATTAGCGGGCTGTGGA+AGG + chr3_3:87689455-87689474 None:intergenic 50.0%
TGTCCTTCCAGAAAGACTCC+AGG - chr3_3:87689785-87689804 Msa0481530:intron 50.0%
! ATCACTCCAGTTGGCCTCAA+AGG - chr3_3:87689813-87689832 Msa0481530:intron 50.0%
CTACCAGAGAGAAAAGGAGG+AGG - chr3_3:87690000-87690019 Msa0481530:intron 50.0%
GTTAACGAGTACAACCCCAG+TGG - chr3_3:87690992-87691011 Msa0481530:five_prime_UTR 50.0%
CCAAACAGTATACCCACCAC+TGG + chr3_3:87691011-87691030 None:intergenic 50.0%
!! CCAGTGGTGGGTATACTGTT+TGG - chr3_3:87691008-87691027 Msa0481530:five_prime_UTR 50.0%
GGTATACTGTTTGGGAGCTG+TGG - chr3_3:87691017-87691036 Msa0481530:five_prime_UTR 50.0%
CAACTTAAGCGCAAGAGAGG+AGG - chr3_3:87691106-87691125 Msa0481530:five_prime_UTR 50.0%
TAAGCGCAAGAGAGGAGGAT+AGG - chr3_3:87691111-87691130 Msa0481530:five_prime_UTR 50.0%
CGACAGCTAAGGTCAAAGCC+GGG + chr3_3:87688312-87688331 None:intergenic 55.0%
! GACAGGTTGGACGACAGCTA+AGG + chr3_3:87688323-87688342 None:intergenic 55.0%
AACTACGTTTGGCCGTGGAC+AGG - chr3_3:87688352-87688371 Msa0481530:CDS 55.0%
! AAGGTACTCCCAATCGACCC+TGG + chr3_3:87688652-87688671 None:intergenic 55.0%
GTCCTTGAGTAGGATGCTGG+AGG - chr3_3:87688821-87688840 Msa0481530:CDS 55.0%
CTCCTCCAGCATCCTACTCA+AGG + chr3_3:87688826-87688845 None:intergenic 55.0%
CATGCAGCGTAAAGCTCGTG+AGG - chr3_3:87688994-87689013 Msa0481530:intron 55.0%
! AAGCTCGTGAGGAGGTACGA+AGG - chr3_3:87689005-87689024 Msa0481530:intron 55.0%
!! TGGGACAAATTAGCGGGCTG+TGG + chr3_3:87689459-87689478 None:intergenic 55.0%
!! TCTGCTCCTTTGAGGCCAAC+TGG + chr3_3:87689822-87689841 None:intergenic 55.0%
! AGGCCTCCTCCTTTTCTCTC+TGG + chr3_3:87690006-87690025 None:intergenic 55.0%
GTCAAGGTCTCCCATCCTCT+TGG + chr3_3:87690631-87690650 None:intergenic 55.0%
GATGGGAGACCTTGACCAGA+AGG - chr3_3:87690635-87690654 Msa0481530:five_prime_UTR 55.0%
AACGAGTACAACCCCAGTGG+TGG - chr3_3:87690995-87691014 Msa0481530:five_prime_UTR 55.0%
ACGAGTACAACCCCAGTGGT+GGG - chr3_3:87690996-87691015 Msa0481530:five_prime_UTR 55.0%
AGCAGACCAAGTACCTCGCC+CGG - chr3_3:87688291-87688310 Msa0481530:intron 60.0%
! TCAAAGCCGGGCGAGGTACT+TGG + chr3_3:87688300-87688319 None:intergenic 60.0%
GCAGCGTAAAGCTCGTGAGG+AGG - chr3_3:87688997-87689016 Msa0481530:intron 60.0%
GCTAAGGTCAAAGCCGGGCG+AGG + chr3_3:87688307-87688326 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 87687214 87692263 87687214 ID=Msa0481530;Name=Msa0481530
chr3_3 mRNA 87687214 87692263 87687214 ID=Msa0481530-mRNA-1;Parent=Msa0481530;Name=Msa0481530-mRNA-1;_AED=0.06;_eAED=0.06;_QI=1367|1|1|1|0.71|0.37|8|317|209
chr3_3 exon 87687214 87687523 87687214 ID=Msa0481530-mRNA-1:exon:25466;Parent=Msa0481530-mRNA-1
chr3_3 exon 87688338 87688578 87688338 ID=Msa0481530-mRNA-1:exon:25465;Parent=Msa0481530-mRNA-1
chr3_3 exon 87688677 87688892 87688677 ID=Msa0481530-mRNA-1:exon:25464;Parent=Msa0481530-mRNA-1
chr3_3 exon 87689181 87689470 87689181 ID=Msa0481530-mRNA-1:exon:25463;Parent=Msa0481530-mRNA-1
chr3_3 exon 87689592 87689681 87689592 ID=Msa0481530-mRNA-1:exon:25462;Parent=Msa0481530-mRNA-1
chr3_3 exon 87690312 87690493 87690312 ID=Msa0481530-mRNA-1:exon:25461;Parent=Msa0481530-mRNA-1
chr3_3 exon 87690601 87691475 87690601 ID=Msa0481530-mRNA-1:exon:25460;Parent=Msa0481530-mRNA-1
chr3_3 exon 87692154 87692263 87692154 ID=Msa0481530-mRNA-1:exon:25459;Parent=Msa0481530-mRNA-1
chr3_3 five_prime_UTR 87692154 87692263 87692154 ID=Msa0481530-mRNA-1:five_prime_utr;Parent=Msa0481530-mRNA-1
chr3_3 five_prime_UTR 87690601 87691475 87690601 ID=Msa0481530-mRNA-1:five_prime_utr;Parent=Msa0481530-mRNA-1
chr3_3 five_prime_UTR 87690312 87690493 87690312 ID=Msa0481530-mRNA-1:five_prime_utr;Parent=Msa0481530-mRNA-1
chr3_3 five_prime_UTR 87689592 87689681 87689592 ID=Msa0481530-mRNA-1:five_prime_utr;Parent=Msa0481530-mRNA-1
chr3_3 five_prime_UTR 87689361 87689470 87689361 ID=Msa0481530-mRNA-1:five_prime_utr;Parent=Msa0481530-mRNA-1
chr3_3 CDS 87689181 87689360 87689181 ID=Msa0481530-mRNA-1:cds;Parent=Msa0481530-mRNA-1
chr3_3 CDS 87688677 87688892 87688677 ID=Msa0481530-mRNA-1:cds;Parent=Msa0481530-mRNA-1
chr3_3 CDS 87688345 87688578 87688345 ID=Msa0481530-mRNA-1:cds;Parent=Msa0481530-mRNA-1
chr3_3 three_prime_UTR 87688338 87688344 87688338 ID=Msa0481530-mRNA-1:three_prime_utr;Parent=Msa0481530-mRNA-1
chr3_3 three_prime_UTR 87687214 87687523 87687214 ID=Msa0481530-mRNA-1:three_prime_utr;Parent=Msa0481530-mRNA-1
Gene Sequence

>Msa0481530

ATGAAACATCTTGGAGATCAAGATGATGCGGCTATTAAGAAAAAAATGGAAGAGATGAATTCAGAGTTGGAAGACAAAATAGAAAGTTTGGAAGATATGGAGTCTATGAATTTAACGCTTATTGTCAAGGAGCGCCAAAGCAATGATGAACTACAGGAAGCTCGGAAAGAATTAATAGAAGGGTTAAATGAAATGCTGACTGGTGCCAAAACTAATATTGGCACCAAGAGGATGGGAGACCTTGACCAGAAGGTTTTTGTGAATGCCTGCAAGAAAAGATTTTCTTCTGATGAAGCTGGGATAAAGGCTGTTGAGCTTTGCTCTTTATGGCAGGAAAATGTGAAGAACTCAGCTTGGCACCCTTTTAAAGTGGTTACAGAGAATGATAACCATGTGTCAGTTATAGATGAGAAAGATGAGAAACTACAAAAGCTGAAGAAGGAATGGGGAGACGAGATATATTCAGCTGTTGTAACAGCCTTAAAAGAAGTTAACGAGTACAACCCCAGTGGTGGGTATACTGTTTGGGAGCTGTGGAACTTCAAAGAAAATAGGAAGGCAACACTGAAAGAAGTGATCACTTATATTGTGGATCACATGAAGCAACTTAAGCGCAAGAGAGGAGGATAG

Protein sequence

>Msa0481530

MKHLGDQDDAAIKKKMEEMNSELEDKIESLEDMESMNLTLIVKERQSNDELQEARKELIEGLNEMLTGAKTNIGTKRMGDLDQKVFVNACKKRFSSDEAGIKAVELCSLWQENVKNSAWHPFKVVTENDNHVSVIDEKDEKLQKLKKEWGDEIYSAVVTALKEVNEYNPSGGYTVWELWNFKENRKATLKEVITYIVDHMKQLKRKRGG*